********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.253 C 0.247 G 0.247 T 0.253 

MOTIF 1-CGTGCGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.2e-001
 0.001578 0.777273 0.044856 0.176293
 0.001578 0.044856 0.951989 0.001578
 0.001578 0.106607 0.088304 0.803511
 0.044887 0.001546 0.951989 0.001578
 0.001578 0.934060 0.044856 0.019506
 0.001578 0.001546 0.995298 0.001578
 0.088196 0.001546 0.908680 0.001578
 0.001578 0.908680 0.044856 0.044887

MOTIF 2-ACCTYACG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.4e-001
 0.994063 0.001966 0.001966 0.002006
 0.002006 0.883913 0.001966 0.112116
 0.057061 0.883913 0.001966 0.057061
 0.002006 0.001966 0.001966 0.994063
 0.057061 0.553227 0.112076 0.277636
 0.828365 0.001966 0.001966 0.167704
 0.167348 0.773625 0.057021 0.002006
 0.002006 0.057021 0.828857 0.112116

MOTIF 3-AGTGGTTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 2.4e-001
 0.939689 0.001944 0.056384 0.001983
 0.001983 0.001944 0.994090 0.001983
 0.001983 0.001944 0.001944 0.994129
 0.056423 0.110999 0.776155 0.056423
 0.001983 0.001944 0.939650 0.056423
 0.056423 0.056384 0.165439 0.721754
 0.188485 0.001944 0.110999 0.698573
 0.862067 0.001944 0.134006 0.001983

MOTIF 4-CGAACCCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.001147 0.996582 0.001124 0.001147
 0.001147 0.014157 0.983549 0.001147
 0.996605 0.001124 0.001124 0.001147
 0.933638 0.001124 0.032608 0.032630
 0.001147 0.983549 0.001124 0.014180
 0.001147 0.838145 0.159561 0.001147
 0.082085 0.725571 0.032760 0.159584
 0.032630 0.288180 0.678043 0.001147

MOTIF 5-CACGGAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.179091 0.533587 0.134476 0.152846
 0.950925 0.045880 0.001582 0.001614
 0.045912 0.862297 0.001582 0.090210
 0.045912 0.001582 0.906595 0.045912
 0.045912 0.001582 0.950893 0.001614
 0.950925 0.001582 0.045880 0.001614
 0.818031 0.001582 0.045880 0.134508
 0.090210 0.001582 0.729260 0.178949

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ceh-13.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ceh-13/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n05.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.96 seconds
********************************************************************************