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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.319 C 0.181 G 0.181 T 0.319 

MOTIF 1-TTKCGMAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 167 P= 2.4e-005
 0.000426 0.000242 0.000242 0.999090
 0.000426 0.000242 0.000242 0.999090
 0.031137 0.000242 0.468863 0.499758
 0.000426 0.998906 0.000242 0.000426
 0.000426 0.000242 0.998906 0.000426
 0.499758 0.468863 0.000242 0.031137
 0.999090 0.000242 0.000242 0.000426
 0.999090 0.000242 0.000242 0.000426

MOTIF 2-TTRTGAWA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.002155 0.001225 0.001225 0.995395
 0.256318 0.001225 0.001225 0.741232
 0.375278 0.001225 0.621341 0.002155
 0.002155 0.001225 0.001225 0.995395
 0.002155 0.001225 0.994464 0.002155
 0.807796 0.001225 0.001225 0.189754
 0.526171 0.188824 0.001225 0.283780
 0.854809 0.001225 0.141811 0.002155

MOTIF 3-ACTCAGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.987947 0.003206 0.003206 0.005641
 0.005641 0.985513 0.003206 0.005641
 0.005641 0.003206 0.003206 0.987947
 0.128281 0.862872 0.003206 0.005641
 0.865307 0.003206 0.125846 0.005641
 0.251316 0.003206 0.739837 0.005641
 0.005641 0.985513 0.003206 0.005641
 0.005641 0.248881 0.739837 0.005641

MOTIF 4-AGGAAGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.986263 0.003654 0.003654 0.006429
 0.006429 0.003654 0.983488 0.006429
 0.006429 0.003654 0.983488 0.006429
 0.986263 0.003654 0.003654 0.006429
 0.986263 0.003654 0.003654 0.006429
 0.006429 0.003654 0.983488 0.006429
 0.706696 0.003654 0.143437 0.146212
 0.706696 0.143437 0.003654 0.146212

MOTIF 5-GTTAAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003492 0.001985 0.991031 0.003492
 0.079422 0.077915 0.154088 0.688575
 0.003492 0.001985 0.001985 0.992538
 0.916608 0.001985 0.001985 0.079422
 0.992538 0.001985 0.001985 0.003492
 0.992538 0.001985 0.001985 0.003492
 0.992538 0.001985 0.001985 0.003492
 0.688575 0.154088 0.077915 0.079422

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/cebp-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_cebp-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	0.97 seconds
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