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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.301 C 0.199 G 0.199 T 0.301 

MOTIF 1-ACTTTCWC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 102 P= 1.6e-001
 0.734188 0.192172 0.072928 0.000711
 0.196647 0.785791 0.016850 0.000711
 0.000711 0.098907 0.000470 0.899911
 0.000711 0.099308 0.040010 0.859970
 0.000711 0.000470 0.000470 0.998348
 0.023872 0.974947 0.000470 0.000711
 0.465267 0.008660 0.113279 0.412795
 0.011631 0.970808 0.016850 0.000711

MOTIF 2-CATTCGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.6e-001
 0.098074 0.850549 0.049295 0.002081
 0.754017 0.001376 0.001376 0.243231
 0.097920 0.049295 0.049295 0.803489
 0.002081 0.001376 0.001376 0.995168
 0.002081 0.898623 0.097215 0.002081
 0.145840 0.001376 0.850703 0.002081
 0.851254 0.097369 0.001376 0.050001
 0.082679 0.049295 0.001376 0.866650

MOTIF 3-AGGTGGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.923278 0.002001 0.002001 0.072721
 0.003026 0.002001 0.991946 0.003026
 0.212783 0.002001 0.712496 0.072721
 0.142639 0.015331 0.071695 0.770335
 0.072721 0.002001 0.922252 0.003026
 0.072721 0.002001 0.922252 0.003026
 0.853584 0.002001 0.071695 0.072721
 0.003026 0.071695 0.852558 0.072721

MOTIF 4-ATTATAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.989457 0.003002 0.003002 0.004540
 0.047821 0.107553 0.003002 0.841624
 0.004540 0.003002 0.003002 0.989457
 0.675466 0.003002 0.107553 0.213979
 0.004540 0.107553 0.003002 0.884905
 0.675466 0.107553 0.212441 0.004540
 0.989457 0.003002 0.003002 0.004540
 0.989457 0.003002 0.003002 0.004540

MOTIF 5-AACGAAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.820928 0.004670 0.004670 0.169732
 0.820928 0.004670 0.167338 0.007064
 0.007064 0.981202 0.004670 0.007064
 0.007064 0.004670 0.981202 0.007064
 0.983596 0.004670 0.004670 0.007064
 0.658260 0.167338 0.004670 0.169732
 0.983596 0.004670 0.004670 0.007064
 0.007064 0.981202 0.004670 0.007064

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/blmp-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_blmp-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c26n06.farnam.hpc.yale.internal
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FINALTIME:	1.36 seconds
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