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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.222 G 0.222 T 0.278 

MOTIF 1-AGACBGTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.990656 0.002873 0.002873 0.003598
 0.003598 0.002873 0.720812 0.272717
 0.990656 0.002873 0.002873 0.003598
 0.003598 0.900225 0.002873 0.093304
 0.003598 0.272281 0.451405 0.272717
 0.003598 0.002873 0.810519 0.183010
 0.003598 0.002873 0.002873 0.990656
 0.003598 0.002873 0.900225 0.093304

MOTIF 2-TWCGCAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 8.3e-001
 0.004917 0.003926 0.003926 0.987231
 0.373878 0.003926 0.003926 0.618270
 0.004917 0.986240 0.003926 0.004917
 0.004917 0.003926 0.986240 0.004917
 0.004917 0.863648 0.003926 0.127508
 0.864639 0.003926 0.003926 0.127508
 0.987231 0.003926 0.003926 0.004917
 0.741653 0.249504 0.003926 0.004917

MOTIF 3-GATGTAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.025273 0.020182 0.929273 0.025273
 0.934364 0.020182 0.020182 0.025273
 0.025273 0.020182 0.020182 0.934364
 0.025273 0.020182 0.929273 0.025273
 0.025273 0.020182 0.020182 0.934364
 0.934364 0.020182 0.020182 0.025273
 0.934364 0.020182 0.020182 0.025273
 0.934364 0.020182 0.020182 0.025273

MOTIF 4-AGAGACGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.846490 0.075292 0.075292 0.002926
 0.002926 0.002337 0.991811 0.002926
 0.919445 0.075292 0.002337 0.002926
 0.125633 0.002337 0.796149 0.075882
 0.919445 0.002337 0.075292 0.002926
 0.002926 0.991811 0.002337 0.002926
 0.075882 0.002337 0.918856 0.002926
 0.075882 0.918856 0.002337 0.002926

MOTIF 5-ACAAATGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.842301 0.002003 0.027895 0.127801
 0.002509 0.992980 0.002003 0.002509
 0.993485 0.002003 0.002003 0.002509
 0.805848 0.064549 0.064549 0.065054
 0.993485 0.002003 0.002003 0.002509
 0.065054 0.127296 0.002003 0.805647
 0.065054 0.064549 0.805343 0.065054
 0.905048 0.064549 0.002003 0.028400

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/attf-5.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_attf-5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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