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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.302 C 0.198 G 0.198 T 0.302 

MOTIF 1-AATAAARA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.7e-001
 0.993049 0.001975 0.001975 0.003002
 0.924062 0.070962 0.001975 0.003002
 0.003002 0.140593 0.070962 0.785443
 0.993049 0.001975 0.001975 0.003002
 0.993049 0.001975 0.001975 0.003002
 0.993049 0.001975 0.001975 0.003002
 0.426847 0.014990 0.486174 0.071989
 0.854430 0.001975 0.001975 0.141620

MOTIF 2-CAGACACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.7e-001
 0.004281 0.988621 0.002816 0.004281
 0.891689 0.002816 0.002816 0.102678
 0.004281 0.101213 0.890224 0.004281
 0.891689 0.002816 0.002816 0.102678
 0.004281 0.890224 0.002816 0.102678
 0.891689 0.002816 0.002816 0.102678
 0.004281 0.790909 0.200529 0.004281
 0.004281 0.200529 0.002816 0.792374

MOTIF 3-AAACGAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.936509 0.018036 0.018036 0.027418
 0.936509 0.018036 0.018036 0.027418
 0.936509 0.018036 0.018036 0.027418
 0.027418 0.927127 0.018036 0.027418
 0.027418 0.018036 0.927127 0.027418
 0.936509 0.018036 0.018036 0.027418
 0.027418 0.018036 0.927127 0.027418
 0.936509 0.018036 0.018036 0.027418

MOTIF 4-AATAACAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.985897 0.004006 0.004006 0.006090
 0.985897 0.004006 0.004006 0.006090
 0.006090 0.143979 0.143979 0.705952
 0.985897 0.004006 0.004006 0.006090
 0.845924 0.004006 0.004006 0.146063
 0.146063 0.843840 0.004006 0.006090
 0.985897 0.004006 0.004006 0.006090
 0.146063 0.143979 0.563896 0.146063

MOTIF 5-AGGAGGTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.820848 0.004658 0.004658 0.169835
 0.007082 0.004658 0.818425 0.169835
 0.007082 0.004658 0.818425 0.169835
 0.820848 0.004658 0.004658 0.169835
 0.007082 0.004658 0.981178 0.007082
 0.007082 0.004658 0.981178 0.007082
 0.007082 0.167412 0.004658 0.820848
 0.983601 0.004658 0.004658 0.007082

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/attf-4.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_attf-4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.70 seconds
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