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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.3 C 0.2 G 0.2 T 0.3 

MOTIF 1-AATTTCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.928716 0.001360 0.001360 0.068565
 0.759531 0.048412 0.048412 0.143646
 0.021512 0.048412 0.095464 0.834612
 0.002034 0.001360 0.048412 0.948194
 0.096139 0.142971 0.048412 0.712478
 0.002034 0.994571 0.001360 0.002034
 0.948194 0.048412 0.001360 0.002034
 0.004141 0.048412 0.851157 0.096290

MOTIF 2-AAGAAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.773724 0.167259 0.001591 0.057425
 0.994439 0.001591 0.001591 0.002380
 0.002380 0.001591 0.938604 0.057425
 0.884171 0.001591 0.111859 0.002380
 0.939393 0.056636 0.001591 0.002380
 0.829125 0.001591 0.111859 0.057425
 0.884348 0.056636 0.056636 0.002380
 0.002380 0.111859 0.111859 0.773903

MOTIF 3-TGACGTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 7.6e-001
 0.027245 0.018209 0.018209 0.936336
 0.027245 0.018209 0.927300 0.027245
 0.936336 0.018209 0.018209 0.027245
 0.027245 0.927300 0.018209 0.027245
 0.027245 0.018209 0.927300 0.027245
 0.027245 0.018209 0.018209 0.936336
 0.027245 0.927300 0.018209 0.027245
 0.936336 0.018209 0.018209 0.027245

MOTIF 4-GATAAGAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.027245 0.018209 0.927300 0.027245
 0.936336 0.018209 0.018209 0.027245
 0.027245 0.018209 0.018209 0.936336
 0.936336 0.018209 0.018209 0.027245
 0.936336 0.018209 0.018209 0.027245
 0.027245 0.018209 0.927300 0.027245
 0.936336 0.018209 0.018209 0.027245
 0.027245 0.018209 0.018209 0.936336

MOTIF 5-AGGCGGMG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.771281 0.223399 0.002131 0.003189
 0.003189 0.002131 0.991491 0.003189
 0.003189 0.149643 0.843979 0.003189
 0.003189 0.917735 0.002131 0.076945
 0.003189 0.149643 0.843979 0.003189
 0.076945 0.002131 0.917735 0.003189
 0.371969 0.370911 0.075887 0.181233
 0.224457 0.106420 0.665934 0.003189

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/atf-7.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_atf-7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.90 seconds
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