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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.235 C 0.265 G 0.265 T 0.235 

MOTIF 1-GGAGGAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.035946 0.015721 0.912386 0.035946
 0.035946 0.015721 0.912386 0.035946
 0.884440 0.001329 0.001329 0.112903
 0.035946 0.036096 0.926779 0.001179
 0.015572 0.001329 0.947153 0.035946
 0.856872 0.001329 0.070975 0.070825
 0.070825 0.001329 0.822030 0.105817
 0.852766 0.036096 0.040313 0.070825

MOTIF 2-AGTGAATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.915500 0.001278 0.048580 0.034642
 0.182249 0.001278 0.647965 0.168508
 0.001135 0.034732 0.068185 0.895949
 0.034588 0.101638 0.829187 0.034588
 0.761975 0.034732 0.001278 0.202015
 0.784619 0.065307 0.082033 0.068041
 0.068041 0.132267 0.001278 0.798414
 0.235360 0.101638 0.661867 0.001135

MOTIF 3-AAGAGACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.807045 0.064407 0.064407 0.064140
 0.993154 0.002371 0.002371 0.002104
 0.002104 0.002371 0.807113 0.188412
 0.931118 0.002371 0.002371 0.064140
 0.002104 0.002371 0.993421 0.002104
 0.558101 0.002371 0.188679 0.250849
 0.064140 0.872278 0.035797 0.027785
 0.931118 0.002371 0.002371 0.064140

MOTIF 4-ACGBGGMA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.994001 0.002077 0.002077 0.001844
 0.001844 0.994235 0.002077 0.001844
 0.001844 0.078941 0.917372 0.001844
 0.001844 0.273878 0.242021 0.482257
 0.133067 0.002077 0.863011 0.001844
 0.001844 0.219518 0.776795 0.001844
 0.558595 0.437484 0.002077 0.001844
 0.731554 0.264524 0.002077 0.001844

MOTIF 5-AGCAATCK STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.844792 0.005342 0.145125 0.004741
 0.004741 0.005342 0.985176 0.004741
 0.004741 0.845393 0.005342 0.144524
 0.984575 0.005342 0.005342 0.004741
 0.984575 0.005342 0.005342 0.004741
 0.144524 0.005342 0.005342 0.844792
 0.004741 0.985176 0.005342 0.004741
 0.004741 0.005342 0.426043 0.563873

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/aly-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_aly-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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