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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-GGAVTASA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 1.2e-001
 0.001109 0.058680 0.939102 0.001109
 0.029963 0.087534 0.852540 0.029963
 0.706432 0.176071 0.116388 0.001109
 0.289926 0.435803 0.273162 0.001109
 0.013054 0.000972 0.000972 0.985002
 0.823730 0.029826 0.145335 0.001109
 0.001109 0.590740 0.378188 0.029963
 0.881484 0.029826 0.087581 0.001109

MOTIF 2-GAAATGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.2e-001
 0.002921 0.002561 0.991596 0.002921
 0.839703 0.002561 0.154815 0.002921
 0.915952 0.002561 0.078566 0.002921
 0.687450 0.002561 0.154815 0.155174
 0.002921 0.002561 0.002561 0.991956
 0.002921 0.078566 0.915592 0.002921
 0.915952 0.002561 0.002561 0.078925
 0.839947 0.078566 0.002561 0.078925

MOTIF 3-ATCGACAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.705374 0.004715 0.144624 0.145287
 0.005377 0.004715 0.004715 0.985193
 0.005377 0.984530 0.004715 0.005377
 0.145287 0.004715 0.704712 0.145287
 0.985193 0.004715 0.004715 0.005377
 0.005377 0.984530 0.004715 0.005377
 0.985193 0.004715 0.004715 0.005377
 0.145287 0.004715 0.844621 0.005377

MOTIF 4-CGCTCTCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.065113 0.919359 0.001077 0.014451
 0.001228 0.071072 0.894479 0.033222
 0.192935 0.549219 0.096905 0.160941
 0.001228 0.128847 0.096905 0.773020
 0.065113 0.772869 0.096905 0.065113
 0.097159 0.033019 0.001077 0.868746
 0.071223 0.798702 0.064962 0.065113
 0.033170 0.065065 0.851383 0.050381

MOTIF 5-ATGGAAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.944922 0.001679 0.051485 0.001914
 0.101528 0.151099 0.101292 0.646082
 0.001914 0.101292 0.894880 0.001914
 0.022533 0.026582 0.899165 0.051721
 0.795502 0.001679 0.051485 0.151334
 0.795502 0.051485 0.001679 0.151334
 0.001914 0.051485 0.894880 0.051721
 0.895115 0.051485 0.051485 0.001914

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/akir-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_akir-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n05.farnam.hpc.yale.internal
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FINALTIME:	1.35 seconds
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