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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-KTTGCAAM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 2.4e-001
 0.150920 0.175656 0.423130 0.250294
 0.026623 0.001713 0.001713 0.969951
 0.076230 0.051279 0.001713 0.870778
 0.001860 0.001713 0.994567 0.001860
 0.001860 0.994567 0.001713 0.001860
 0.870778 0.001713 0.051279 0.076230
 0.969951 0.001713 0.001713 0.026623
 0.250294 0.423130 0.175656 0.150920

MOTIF 2-AACCMGKR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.0e-001
 0.995276 0.001531 0.001531 0.001662
 0.951007 0.045799 0.001531 0.001662
 0.001662 0.995144 0.001531 0.001662
 0.001662 0.995144 0.001531 0.001662
 0.552020 0.444787 0.001531 0.001662
 0.001662 0.197456 0.799220 0.001662
 0.090199 0.134479 0.444929 0.330393
 0.419215 0.045799 0.533324 0.001662

MOTIF 3-CCGRGAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.002473 0.926913 0.002278 0.068336
 0.068336 0.926913 0.002278 0.002473
 0.200274 0.002278 0.794976 0.002473
 0.333920 0.002278 0.661329 0.002473
 0.068336 0.068140 0.861050 0.002473
 0.861246 0.068140 0.002278 0.068336
 0.134411 0.068140 0.729113 0.068336
 0.002473 0.002278 0.992776 0.002473

MOTIF 4-AGTACACG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.988373 0.003768 0.003768 0.004091
 0.004091 0.003768 0.988049 0.004091
 0.113043 0.112719 0.003768 0.770470
 0.988373 0.003768 0.003768 0.004091
 0.004091 0.988049 0.003768 0.004091
 0.770470 0.003768 0.112719 0.113043
 0.004091 0.988049 0.003768 0.004091
 0.113043 0.003768 0.879098 0.004091

MOTIF 5-AAGGGGAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.912258 0.002742 0.082023 0.002977
 0.958720 0.002742 0.035561 0.002977
 0.002977 0.002742 0.991304 0.002977
 0.161794 0.002742 0.753206 0.082258
 0.002977 0.161559 0.832487 0.002977
 0.002977 0.002742 0.991304 0.002977
 0.991539 0.002742 0.002742 0.002977
 0.002977 0.002742 0.002742 0.991539

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/ahr-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_ahr-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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