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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.246 C 0.254 G 0.254 T 0.246 

MOTIF 1-ACGCGGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 2.4e-001
 0.989301 0.003606 0.003606 0.003487
 0.003487 0.989420 0.003606 0.003487
 0.003487 0.200895 0.792132 0.003487
 0.101814 0.792766 0.101933 0.003487
 0.101814 0.003606 0.891093 0.003487
 0.003487 0.003606 0.989420 0.003487
 0.003487 0.003606 0.891093 0.101814
 0.003487 0.989420 0.003606 0.003487

MOTIF 2-VAAGCGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 2.4e-001
 0.441590 0.222686 0.222686 0.113037
 0.878956 0.004003 0.004003 0.113037
 0.988122 0.004003 0.004003 0.003871
 0.003871 0.004003 0.988254 0.003871
 0.003871 0.988254 0.004003 0.003871
 0.003871 0.004003 0.988254 0.003871
 0.988122 0.004003 0.004003 0.003871
 0.003871 0.004003 0.988254 0.003871

MOTIF 3-GGACWCGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 3.0e-001
 0.001013 0.001048 0.996927 0.001013
 0.001013 0.196080 0.630374 0.172534
 0.796899 0.201040 0.001048 0.001013
 0.115822 0.596203 0.200994 0.086981
 0.538949 0.001048 0.001048 0.458956
 0.001013 0.968363 0.001048 0.029577
 0.110399 0.001048 0.659030 0.229524
 0.813685 0.001048 0.184255 0.001013

MOTIF 4-CTASACCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.002155 0.932678 0.002229 0.062937
 0.002155 0.002229 0.123988 0.871627
 0.932605 0.002229 0.002229 0.062937
 0.002155 0.501656 0.494033 0.002155
 0.993386 0.002229 0.002229 0.002155
 0.062937 0.932678 0.002229 0.002155
 0.002155 0.993460 0.002229 0.002155
 0.993386 0.002229 0.002229 0.002155

MOTIF 5-CCCTGCTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.002916 0.908918 0.003016 0.085150
 0.002916 0.744184 0.167749 0.085150
 0.250414 0.661419 0.003016 0.085150
 0.002916 0.003016 0.003016 0.991052
 0.002916 0.003016 0.991152 0.002916
 0.002916 0.991152 0.003016 0.002916
 0.002916 0.085250 0.003016 0.908818
 0.002916 0.085250 0.908918 0.002916

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/Y22D7AL.16.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_Y22D7AL.16/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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