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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.243 C 0.257 G 0.257 T 0.243 

MOTIF 1-CTMGGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 1.5e-002
 0.000756 0.842204 0.004877 0.152163
 0.000756 0.000799 0.000799 0.997647
 0.615435 0.339902 0.043907 0.000756
 0.000756 0.000799 0.910946 0.087500
 0.022311 0.022353 0.716344 0.238992
 0.000756 0.889391 0.000799 0.109054
 0.022311 0.976134 0.000799 0.000756
 0.775621 0.000799 0.222824 0.000756

MOTIF 2-GAGTACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 2.9e-001
 0.047942 0.001716 0.948717 0.001625
 0.994943 0.001716 0.001716 0.001625
 0.001625 0.189255 0.761178 0.047942
 0.001625 0.001716 0.001716 0.994943
 0.901935 0.001716 0.001716 0.094633
 0.001625 0.995034 0.001716 0.001625
 0.948626 0.001716 0.048033 0.001625
 0.001625 0.902026 0.001716 0.094633

MOTIF 3-GGCCAYCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.092678 0.003317 0.900864 0.003142
 0.003142 0.003317 0.900864 0.092678
 0.003142 0.990400 0.003317 0.003142
 0.092678 0.900864 0.003317 0.003142
 0.811152 0.182390 0.003317 0.003142
 0.092678 0.361462 0.003317 0.542543
 0.003142 0.990400 0.003317 0.003142
 0.811152 0.092853 0.092853 0.003142

MOTIF 4-TCGGACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.101136 0.003620 0.003620 0.891624
 0.003428 0.891816 0.003620 0.101136
 0.003428 0.297534 0.695610 0.003428
 0.101136 0.003620 0.891816 0.003428
 0.989332 0.003620 0.003620 0.003428
 0.003428 0.989524 0.003620 0.003428
 0.989332 0.003620 0.003620 0.003428
 0.989332 0.003620 0.003620 0.003428

MOTIF 5-AARCGCGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.991027 0.003045 0.003045 0.002883
 0.991027 0.003045 0.003045 0.002883
 0.496623 0.168067 0.250247 0.085063
 0.002883 0.909009 0.003045 0.085063
 0.002883 0.003045 0.826830 0.167242
 0.002883 0.991189 0.003045 0.002883
 0.085063 0.003045 0.909009 0.002883
 0.002883 0.909009 0.085224 0.002883

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/Y116A8C.19.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_Y116A8C.19/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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