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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.294 C 0.206 G 0.206 T 0.294 

MOTIF 1-GCARACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.2e-001
 0.001535 0.001074 0.995857 0.001535
 0.037698 0.887368 0.001074 0.073861
 0.996318 0.001074 0.001074 0.001535
 0.401731 0.088798 0.399097 0.110373
 0.923992 0.001074 0.073399 0.001535
 0.001535 0.995857 0.001074 0.001535
 0.778170 0.001074 0.219222 0.001535
 0.037698 0.742484 0.145841 0.073977

MOTIF 2-AATTCTCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 2.4e-001
 0.818153 0.002569 0.089087 0.090191
 0.991190 0.002569 0.002569 0.003672
 0.090191 0.089087 0.002569 0.818153
 0.090191 0.002569 0.089087 0.818153
 0.090191 0.903568 0.002569 0.003672
 0.003672 0.002569 0.002569 0.991190
 0.090191 0.730532 0.089087 0.090191
 0.039488 0.781234 0.089087 0.090191

MOTIF 3-GCGCTCTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.004168 0.002916 0.988748 0.004168
 0.004168 0.988748 0.002916 0.004168
 0.004168 0.101118 0.890546 0.004168
 0.004168 0.890546 0.002916 0.102370
 0.200572 0.002916 0.002916 0.793597
 0.004168 0.988748 0.002916 0.004168
 0.004168 0.199953 0.002916 0.792964
 0.990001 0.002916 0.002916 0.004168

MOTIF 4-TCTTTTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 120 P= 8.3e-001
 0.050048 0.107969 0.043869 0.798114
 0.088661 0.802123 0.058372 0.050844
 0.095435 0.101788 0.078823 0.723954
 0.137020 0.046096 0.038153 0.778731
 0.032344 0.022218 0.055857 0.889581
 0.029597 0.059761 0.041378 0.869264
 0.045430 0.812590 0.051671 0.090309
 0.710509 0.083153 0.064390 0.141948

MOTIF 5-GAGAGGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.003805 0.002662 0.989727 0.003805
 0.811562 0.181971 0.002662 0.003805
 0.003805 0.092316 0.631109 0.272769
 0.990871 0.002662 0.002662 0.003805
 0.183403 0.002662 0.810130 0.003805
 0.003805 0.092316 0.900073 0.003805
 0.003805 0.989727 0.002662 0.003805
 0.273057 0.002662 0.720475 0.003805

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/C34F6.9.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_C34F6.9/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	0.96 seconds
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