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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.271 C 0.229 G 0.229 T 0.271 

MOTIF 1-CTMGGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.001940 0.746139 0.001642 0.250279
 0.001940 0.001642 0.001642 0.994775
 0.563083 0.433334 0.001642 0.001940
 0.101276 0.001642 0.895142 0.001940
 0.001940 0.001642 0.745979 0.250438
 0.001940 0.994477 0.001642 0.001940
 0.001940 0.994477 0.001642 0.001940
 0.741673 0.001642 0.254744 0.001940

MOTIF 2-ACGAGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.896618 0.001351 0.001351 0.100681
 0.248659 0.666571 0.001351 0.083419
 0.042442 0.001351 0.937703 0.018505
 0.873166 0.042196 0.042196 0.042442
 0.001596 0.018259 0.978549 0.001596
 0.954857 0.042196 0.001351 0.001596
 0.914011 0.001351 0.042196 0.042442
 0.954857 0.001351 0.001351 0.042442

MOTIF 3-GTCCGCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.089567 0.001450 0.907270 0.001713
 0.001713 0.001450 0.001450 0.995386
 0.267853 0.728984 0.001450 0.001713
 0.019868 0.914957 0.045306 0.019868
 0.001713 0.001450 0.951267 0.045569
 0.045569 0.951267 0.001450 0.001713
 0.907674 0.001450 0.045306 0.045569
 0.966149 0.001450 0.030688 0.001713

MOTIF 4-CTCCTCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.182038 0.811533 0.002947 0.003482
 0.003482 0.002947 0.002947 0.990623
 0.003482 0.990088 0.002947 0.003482
 0.003482 0.990088 0.002947 0.003482
 0.003482 0.002947 0.002947 0.990623
 0.003482 0.990088 0.002947 0.003482
 0.003482 0.181503 0.002947 0.812068
 0.003482 0.990088 0.002947 0.003482

MOTIF 5-GCCAGCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.085401 0.002718 0.908670 0.003211
 0.003211 0.908670 0.084908 0.003211
 0.085401 0.908670 0.002718 0.003211
 0.991353 0.002718 0.002718 0.003211
 0.167856 0.002718 0.826215 0.003211
 0.003211 0.990860 0.002718 0.003211
 0.909163 0.002718 0.084908 0.003211
 0.826973 0.084908 0.084908 0.003211

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/C04F5.9.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_C04F5.9/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.96 seconds
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