******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:9718047-9718127 1.0000 80 chrV:10509016-10509096 1.0000 80 chrV:3805661-3805741 1.0000 80 chrX:14947201-14947281 1.0000 80 chrII:2420868-2420948 1.0000 80 chrIII:7947264-7947344 1.0000 80 chrV:12963333-12963413 1.0000 80 chrI:2121008-2121088 1.0000 80 chrV:12741864-12741944 1.0000 80 chrIV:14412818-14412898 1.0000 80 chrIII:5581203-5581283 1.0000 80 chrI:8798295-8798375 1.0000 80 chrX:1148625-1148705 1.0000 80 chrIV:7633191-7633271 1.0000 80 chrX:1394613-1394693 1.0000 80 chrV:9756418-9756498 1.0000 80 chrIV:11031842-11031922 1.0000 80 chrI:6914742-6914822 1.0000 80 chrV:12410531-12410611 1.0000 80 chrX:3154718-3154798 1.0000 80 chrIV:9514304-9514384 1.0000 80 chrV:10103946-10104026 1.0000 80 chrX:3256933-3257013 1.0000 80 chrV:16395315-16395395 1.0000 80 chrV:4042031-4042111 1.0000 80 chrV:13358064-13358144 1.0000 80 chrV:4642861-4642941 1.0000 80 chrII:8421036-8421116 1.0000 80 chrX:6059481-6059561 1.0000 80 chrI:5811599-5811679 1.0000 80 chrM:11914-11994 1.0000 80 chrIII:6612432-6612512 1.0000 80 chrII:9157285-9157365 1.0000 80 chrV:4908727-4908807 1.0000 80 chrV:123611-123691 1.0000 80 chrIII:1284731-1284811 1.0000 80 chrII:5628619-5628699 1.0000 80 chrV:1629520-1629600 1.0000 80 chrX:5355680-5355760 1.0000 80 chrV:8025391-8025471 1.0000 80 chrX:12691493-12691573 1.0000 80 chrIV:17406260-17406340 1.0000 80 chrV:11803903-11803983 1.0000 80 chrII:13954214-13954294 1.0000 80 chrV:8267406-8267486 1.0000 80 chrX:4009089-4009169 1.0000 80 chrV:462443-462523 1.0000 80 chrX:7952431-7952511 1.0000 80 chrM:695-775 1.0000 80 chrX:14946548-14946628 1.0000 80 chrII:6366881-6366961 1.0000 80 chrX:10341182-10341262 1.0000 80 chrII:8420437-8420517 1.0000 80 chrIII:8400619-8400699 1.0000 80 chrX:9035285-9035365 1.0000 80 chrV:15052541-15052621 1.0000 80 chrV:5081102-5081182 1.0000 80 chrIV:12282456-12282536 1.0000 80 chrX:14557804-14557884 1.0000 80 chrX:13060123-13060203 1.0000 80 chrV:10590251-10590331 1.0000 80 chrV:16726100-16726180 1.0000 80 chrIII:9714852-9714932 1.0000 80 chrII:14297209-14297289 1.0000 80 chrIII:12426132-12426212 1.0000 80 chrIV:9500222-9500302 1.0000 80 chrII:8485822-8485902 1.0000 80 chrIII:1308340-1308420 1.0000 80 chrX:6517542-6517622 1.0000 80 chrM:13134-13214 1.0000 80 chrV:10937488-10937568 1.0000 80 chrIII:13455925-13456005 1.0000 80 chrIV:9716663-9716743 1.0000 80 chrX:6749731-6749811 1.0000 80 chrV:4889665-4889745 1.0000 80 chrIII:8734764-8734844 1.0000 80 chrV:15354821-15354901 1.0000 80 chrM:4060-4140 1.0000 80 chrM:6827-6907 1.0000 80 chrIV:12029924-12030004 1.0000 80 chrM:13599-13679 1.0000 80 chrV:10938850-10938930 1.0000 80 chrV:4862913-4862993 1.0000 80 chrX:4007901-4007981 1.0000 80 chrIV:9651333-9651413 1.0000 80 chrV:5780169-5780249 1.0000 80 chrM:7873-7953 1.0000 80 chrV:15880717-15880797 1.0000 80 chrX:6274393-6274473 1.0000 80 chrIV:17288052-17288132 1.0000 80 chrX:13348583-13348663 1.0000 80 chrM:10430-10510 1.0000 80 chrV:5131608-5131688 1.0000 80 chrX:8473591-8473671 1.0000 80 chrII:13834999-13835079 1.0000 80 chrX:2107781-2107861 1.0000 80 chrII:13468019-13468099 1.0000 80 chrX:6792715-6792795 1.0000 80 chrX:4142794-4142874 1.0000 80 chrX:6905709-6905789 1.0000 80 chrIII:1279359-1279439 1.0000 80 chrIII:4015794-4015874 1.0000 80 chrIII:5502992-5503072 1.0000 80 chrIV:13783688-13783768 1.0000 80 chrIV:14445268-14445348 1.0000 80 chrM:2641-2721 1.0000 80 chrX:11661755-11661835 1.0000 80 chrI:2126844-2126924 1.0000 80 chrX:7825757-7825837 1.0000 80 chrV:5687710-5687790 1.0000 80 chrX:6876746-6876826 1.0000 80 chrX:6250388-6250468 1.0000 80 chrV:211901-211981 1.0000 80 chrX:3114801-3114881 1.0000 80 chrV:5780839-5780919 1.0000 80 chrX:4016635-4016715 1.0000 80 chrV:4024974-4025054 1.0000 80 chrM:209-289 1.0000 80 chrI:13138882-13138962 1.0000 80 chrI:8852617-8852697 1.0000 80 chrIII:8689872-8689952 1.0000 80 chrIV:13786797-13786877 1.0000 80 chrII:1820043-1820123 1.0000 80 chrIV:14414334-14414414 1.0000 80 chrX:3842700-3842780 1.0000 80 chrIV:2798519-2798599 1.0000 80 chrII:13632309-13632389 1.0000 80 chrX:17140556-17140636 1.0000 80 chrIV:12400161-12400241 1.0000 80 chrIV:12215475-12215555 1.0000 80 chrI:2019479-2019559 1.0000 80 chrIV:14413571-14413651 1.0000 80 chrI:1049244-1049324 1.0000 80 chrX:16695313-16695393 1.0000 80 chrII:6345435-6345515 1.0000 80 chrI:9322545-9322625 1.0000 80 chrIII:12919851-12919931 1.0000 80 chrV:12733570-12733650 1.0000 80 chrII:7332192-7332272 1.0000 80 chrV:10399448-10399528 1.0000 80 chrM:9793-9873 1.0000 80 chrI:10753129-10753209 1.0000 80 chrII:8487614-8487694 1.0000 80 chrX:15983446-15983526 1.0000 80 chrX:7200657-7200737 1.0000 80 chrM:5600-5680 1.0000 80 chrV:9571303-9571383 1.0000 80 chrV:4483121-4483201 1.0000 80 chrX:12172857-12172937 1.0000 80 chrV:9078981-9079061 1.0000 80 chrIII:5916153-5916233 1.0000 80 chrIV:8453274-8453354 1.0000 80 chrX:14476774-14476854 1.0000 80 chrIV:13639114-13639194 1.0000 80 chrX:7661023-7661103 1.0000 80 chrII:12050687-12050767 1.0000 80 chrX:15222026-15222106 1.0000 80 chrX:11974843-11974923 1.0000 80 chrV:10732064-10732144 1.0000 80 chrI:5810186-5810266 1.0000 80 chrI:6942972-6943052 1.0000 80 chrIV:13370505-13370585 1.0000 80 chrI:6364836-6364916 1.0000 80 chrX:13355237-13355317 1.0000 80 chrII:6839107-6839187 1.0000 80 chrIV:15037137-15037217 1.0000 80 chrI:9315696-9315776 1.0000 80 chrI:12503049-12503129 1.0000 80 chrX:6271859-6271939 1.0000 80 chrIV:5667329-5667409 1.0000 80 chrV:7760369-7760449 1.0000 80 chrV:532156-532236 1.0000 80 chrIV:13919370-13919450 1.0000 80 chrX:12031909-12031989 1.0000 80 chrX:13311877-13311957 1.0000 80 chrII:6897697-6897777 1.0000 80 chrIV:6555115-6555195 1.0000 80 chrV:534283-534363 1.0000 80 chrII:14407877-14407957 1.0000 80 chrIV:12527333-12527413 1.0000 80 chrII:10134432-10134512 1.0000 80 chrV:20413644-20413724 1.0000 80 chrV:16160212-16160292 1.0000 80 chrIII:12325493-12325573 1.0000 80 chrI:5384276-5384356 1.0000 80 chrII:4943008-4943088 1.0000 80 chrX:12878113-12878193 1.0000 80 chrI:8022725-8022805 1.0000 80 chrV:5764011-5764091 1.0000 80 chrIV:13777610-13777690 1.0000 80 chrIV:14576627-14576707 1.0000 80 chrIV:13633341-13633421 1.0000 80 chrX:6503454-6503534 1.0000 80 chrX:11008240-11008320 1.0000 80 chrIV:13727969-13728049 1.0000 80 chrV:12921857-12921937 1.0000 80 chrX:11924319-11924399 1.0000 80 chrII:13469283-13469363 1.0000 80 chrV:14410067-14410147 1.0000 80 chrIV:14883906-14883986 1.0000 80 chrIV:14013839-14013919 1.0000 80 chrIV:13701580-13701660 1.0000 80 chrV:10087301-10087381 1.0000 80 chrX:9090778-9090858 1.0000 80 chrI:8963285-8963365 1.0000 80 chrIII:5938069-5938149 1.0000 80 chrIV:12209175-12209255 1.0000 80 chrX:12501055-12501135 1.0000 80 chrII:12768407-12768487 1.0000 80 chrM:11435-11515 1.0000 80 chrII:6928539-6928619 1.0000 80 chrIII:6962245-6962325 1.0000 80 chrI:8867584-8867664 1.0000 80 chrV:9985014-9985094 1.0000 80 chrIV:13313818-13313898 1.0000 80 chrIV:14116314-14116394 1.0000 80 chrIII:5317776-5317856 1.0000 80 chrIV:13253980-13254060 1.0000 80 chrX:9347777-9347857 1.0000 80 chrI:5308244-5308324 1.0000 80 chrI:9882295-9882375 1.0000 80 chrV:15298785-15298865 1.0000 80 chrX:4208670-4208750 1.0000 80 chrX:5213633-5213713 1.0000 80 chrIV:8199953-8200033 1.0000 80 chrIII:10822668-10822748 1.0000 80 chrIV:4745594-4745674 1.0000 80 chrX:13974524-13974604 1.0000 80 chrX:14979028-14979108 1.0000 80 chrV:5576160-5576240 1.0000 80 chrIV:9371249-9371329 1.0000 80 chrV:7848433-7848513 1.0000 80 chrIV:291926-292006 1.0000 80 chrX:13401487-13401567 1.0000 80 chrM:3624-3704 1.0000 80 chrIII:5201347-5201427 1.0000 80 chrIV:13322590-13322670 1.0000 80 chrIII:7081654-7081734 1.0000 80 chrX:15281406-15281486 1.0000 80 chrX:10677613-10677693 1.0000 80 chrIV:15476557-15476637 1.0000 80 chrX:8549052-8549132 1.0000 80 chrX:10576575-10576655 1.0000 80 chrX:10124392-10124472 1.0000 80 chrIV:14656827-14656907 1.0000 80 chrII:11756974-11757054 1.0000 80 chrI:5373682-5373762 1.0000 80 chrIII:7375633-7375713 1.0000 80 chrM:11163-11243 1.0000 80 chrV:1134528-1134608 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ztf-7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.321 C 0.177 G 0.18 T 0.322 Background letter frequencies (from file dataset with add-one prior applied): A 0.321 C 0.177 G 0.18 T 0.322 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTKCATCA MEME-1 width = 8 sites = 63 llr = 535 E-value = 1.3e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2:7::a pos.-specific C :::a:1a: probability G :14:3::: matrix T a93::9:: bits 2.5 * * 2.3 * * 2.0 * * 1.8 * * ** Relative 1.5 * * ** Entropy 1.3 ** * *** (12.2 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGCATCA consensus T G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5317776-5317856 16 1.94e-05 TTCCAATAAA TTGCATCA TTCATAAACA chrIII:5938069-5938149 63 1.94e-05 ATTTCCGTGC TTGCATCA TCATCATCAT chrX:4142794-4142874 28 1.94e-05 TCTGCTTGAA TTGCATCA TGCCACGTCA chrII:13468019-13468099 20 1.94e-05 GAGAAGAATT TTGCATCA TATTGCCACA chrIV:17288052-17288132 34 1.94e-05 AAAACGCCAA TTGCATCA TCTGGCGAAA chrV:15880717-15880797 39 1.94e-05 GGGCTCTCTA TTGCATCA TATGATCTTT chrIV:9651333-9651413 3 1.94e-05 AT TTGCATCA TGATTTGGTA chrX:4007901-4007981 32 1.94e-05 TTTCTCACGC TTGCATCA TATAGACACA chrIII:8734764-8734844 66 1.94e-05 TTCGCAATTA TTGCATCA TGCAGGT chrIII:13455925-13456005 26 1.94e-05 TCCACTCGTT TTGCATCA GATGATGACG chrIV:9500222-9500302 28 1.94e-05 ACTCTGCTCT TTGCATCA TCTTATCAGT chrII:14297209-14297289 30 1.94e-05 CCTCCCCCAC TTGCATCA TCTAACCCCG chrX:7952431-7952511 43 1.94e-05 CATCATATGA TTGCATCA CATTCGCCTG chrV:8267406-8267486 27 1.94e-05 TTTCATTTTC TTGCATCA TCAAACGGCG chrX:12691493-12691573 60 1.94e-05 ACTCCACATT TTGCATCA TCTTATCAAC chrII:5628619-5628699 25 1.94e-05 TGATAATCCA TTGCATCA TCTATAGCAA chrV:12741864-12741944 22 1.94e-05 TAGTCATTAG TTGCATCA TATGTCTGCT chrV:10509016-10509096 12 1.94e-05 TTTTTCCTTC TTGCATCA TGGGGTTGAA chrIV:9718047-9718127 13 1.94e-05 TGTGTTTTGA TTGCATCA TGTGATGTGT chrIII:10822668-10822748 8 3.03e-05 TGACAAG TTGCGTCA CAAACCATTG chrV:12963333-12963413 40 3.03e-05 GACCACAAAA TTGCGTCA TATGTTTTTA chrV:3805661-3805741 26 3.03e-05 ACTAAAAATA TTGCGTCA TATGTTGTAA chrX:13974524-13974604 37 6.50e-05 ACTCATAAAC TTTCATCA TCTTCTGCAA chrX:12031909-12031989 65 6.50e-05 CTTTTGAAAA TTTCATCA TATGATCT chrV:10732064-10732144 23 6.50e-05 TCTGAATCAC TTTCATCA TATGTACGCA chrV:4483121-4483201 7 6.50e-05 CTACTG TTTCATCA CATGAACATC chrI:10753129-10753209 27 6.50e-05 TCTTTGATCA TTTCATCA TACATTGCCA chrX:6876746-6876826 20 6.50e-05 TCctacaatg tttcatca tcttggcatc chrIII:9714852-9714932 19 6.50e-05 ACATTTTGTA TTTCATCA TATGTCATTG chrX:14557804-14557884 37 6.50e-05 GACGTAGACG TTTCATCA TATCATTCCT chrV:462443-462523 51 6.50e-05 CAAATAATTT TTTCATCA TATGGTTACA chrV:13358064-13358144 40 6.50e-05 aGATTGTTAA TTTCATCA CCTGATTAAT chrI:8798295-8798375 21 6.50e-05 CTTTCATTAA TTTCATCA TTATTATCAT chrII:13469283-13469363 14 8.44e-05 CTCCACTATA TTTCGTCA TGCTTACACT chrV:5780169-5780249 42 8.44e-05 CCTATGCCGA TTTCGTCA TTTCGTGAAA chrX:6749731-6749811 21 8.44e-05 CCAAAGGTCA TTTCGTCA TATTTTTGTG chrII:8485822-8485902 53 8.44e-05 AAACCTTTTT TTTCGTCA TATAATGAAA chrI:6914742-6914822 31 8.44e-05 TCTGTAATTA TTTCGTCA TCTGATGCTG chrIV:7633191-7633271 34 8.44e-05 CTTGAGAATG TTTCGTCA GATGATGCAA chrV:11803903-11803983 49 9.53e-05 CAATGCTCGT TGGCATCA GGGGTTGATG chrIV:14412818-14412898 29 9.53e-05 ACCAAGTTTG TGGCATCA TACGATGAAA chrX:6503454-6503534 22 1.30e-04 AGATCAATAA TTACATCA TTCCGTGAAA chrI:5384276-5384356 73 1.30e-04 CAGTTAATTG TTACATCA chrX:17140556-17140636 58 1.30e-04 AGGTACTTGT TTACATCA TATCAGGAAA chrV:5687710-5687790 54 1.30e-04 TGTTATATGA TTACATCA GATTGATCGT chrX:2107781-2107861 32 1.30e-04 AACAAACATA TTACATCA TTGTTTACCC chrIII:6612432-6612512 8 1.30e-04 AATTCTG TTACATCA TATTTTTTTA chrIV:11031842-11031922 28 1.30e-04 AATTTCGAGG TTACATCA TATAACTTGA chrI:2121008-2121088 34 1.30e-04 GATACGGGGC TTACATCA TACTCATAAG chrIV:13786797-13786877 64 1.36e-04 AGCGAGTTTC TGGCGTCA TAATGTTTG chrI:1049244-1049324 29 1.55e-04 GTCATGATTC TTACGTCA TTGTCGCCGC chrV:15354821-15354901 68 1.55e-04 TGCACCGAGA TTACGTCA TTTTG chrX:3154718-3154798 30 1.55e-04 CCATTCCTAG TTACGTCA GATGATTTTA chrII:13632309-13632389 7 1.66e-04 AAGGTA TTGCACCA TATTATTTTC chrX:4009089-4009169 28 1.66e-04 ACAATCATTG TTGCACCA TATGGCTCGA chrIV:17406260-17406340 23 1.85e-04 TTTGTTATCA TGTCATCA CATCACCACC chrV:4908727-4908807 28 1.85e-04 GAAAAACATA TGTCATCA TATTACTCAC chrX:9347777-9347857 20 2.02e-04 TACTGGACTC TGTCGTCA TCTGAGAAAC chrX:1394613-1394693 29 2.02e-04 CCGGAATTTC TGTCGTCA GATGATGATA chrI:9315696-9315776 71 2.52e-04 aatacatttg tgacgtca ca chrV:4024974-4025054 73 2.62e-04 TTACGAAATA TTTCGCCA chrIV:14576627-14576707 52 2.87e-04 ATGCTGACCA TTACACCA CGAACGCGCT chrII:1820043-1820123 19 2.91e-04 TTTCGCAATA TGGCGCCA TAGGCAACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5317776-5317856 1.9e-05 15_[+1]_57 chrIII:5938069-5938149 1.9e-05 62_[+1]_10 chrX:4142794-4142874 1.9e-05 27_[+1]_45 chrII:13468019-13468099 1.9e-05 19_[+1]_53 chrIV:17288052-17288132 1.9e-05 33_[+1]_39 chrV:15880717-15880797 1.9e-05 38_[+1]_34 chrIV:9651333-9651413 1.9e-05 2_[+1]_70 chrX:4007901-4007981 1.9e-05 31_[+1]_41 chrIII:8734764-8734844 1.9e-05 65_[+1]_7 chrIII:13455925-13456005 1.9e-05 25_[+1]_47 chrIV:9500222-9500302 1.9e-05 27_[+1]_45 chrII:14297209-14297289 1.9e-05 29_[+1]_43 chrX:7952431-7952511 1.9e-05 42_[+1]_30 chrV:8267406-8267486 1.9e-05 26_[+1]_46 chrX:12691493-12691573 1.9e-05 59_[+1]_13 chrII:5628619-5628699 1.9e-05 24_[+1]_48 chrV:12741864-12741944 1.9e-05 21_[+1]_51 chrV:10509016-10509096 1.9e-05 11_[+1]_61 chrIV:9718047-9718127 1.9e-05 12_[+1]_60 chrIII:10822668-10822748 3e-05 7_[+1]_65 chrV:12963333-12963413 3e-05 39_[+1]_33 chrV:3805661-3805741 3e-05 25_[+1]_47 chrX:13974524-13974604 6.5e-05 36_[+1]_36 chrX:12031909-12031989 6.5e-05 64_[+1]_8 chrV:10732064-10732144 6.5e-05 22_[+1]_50 chrV:4483121-4483201 6.5e-05 6_[+1]_66 chrI:10753129-10753209 6.5e-05 26_[+1]_46 chrX:6876746-6876826 6.5e-05 19_[+1]_53 chrIII:9714852-9714932 6.5e-05 18_[+1]_54 chrX:14557804-14557884 6.5e-05 36_[+1]_36 chrV:462443-462523 6.5e-05 50_[+1]_22 chrV:13358064-13358144 6.5e-05 39_[+1]_33 chrI:8798295-8798375 6.5e-05 20_[+1]_52 chrII:13469283-13469363 8.4e-05 13_[+1]_59 chrV:5780169-5780249 8.4e-05 41_[+1]_31 chrX:6749731-6749811 8.4e-05 20_[+1]_52 chrII:8485822-8485902 8.4e-05 52_[+1]_20 chrI:6914742-6914822 8.4e-05 30_[+1]_42 chrIV:7633191-7633271 8.4e-05 33_[+1]_39 chrV:11803903-11803983 9.5e-05 48_[+1]_24 chrIV:14412818-14412898 9.5e-05 28_[+1]_44 chrX:6503454-6503534 0.00013 21_[+1]_51 chrI:5384276-5384356 0.00013 72_[+1] chrX:17140556-17140636 0.00013 57_[+1]_15 chrV:5687710-5687790 0.00013 53_[+1]_19 chrX:2107781-2107861 0.00013 31_[+1]_41 chrIII:6612432-6612512 0.00013 7_[+1]_65 chrIV:11031842-11031922 0.00013 27_[+1]_45 chrI:2121008-2121088 0.00013 33_[+1]_39 chrIV:13786797-13786877 0.00014 63_[+1]_9 chrI:1049244-1049324 0.00016 28_[+1]_44 chrV:15354821-15354901 0.00016 67_[+1]_5 chrX:3154718-3154798 0.00016 29_[+1]_43 chrII:13632309-13632389 0.00017 6_[+1]_66 chrX:4009089-4009169 0.00017 27_[+1]_45 chrIV:17406260-17406340 0.00019 22_[+1]_50 chrV:4908727-4908807 0.00019 27_[+1]_45 chrX:9347777-9347857 0.0002 19_[+1]_53 chrX:1394613-1394693 0.0002 28_[+1]_44 chrI:9315696-9315776 0.00025 70_[+1]_2 chrV:4024974-4025054 0.00026 72_[+1] chrIV:14576627-14576707 0.00029 51_[+1]_21 chrII:1820043-1820123 0.00029 18_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKCATCA width=8 seqs=63 chrIII:5317776-5317856 ( 16) TTGCATCA 1 chrIII:5938069-5938149 ( 63) TTGCATCA 1 chrX:4142794-4142874 ( 28) TTGCATCA 1 chrII:13468019-13468099 ( 20) TTGCATCA 1 chrIV:17288052-17288132 ( 34) TTGCATCA 1 chrV:15880717-15880797 ( 39) TTGCATCA 1 chrIV:9651333-9651413 ( 3) TTGCATCA 1 chrX:4007901-4007981 ( 32) TTGCATCA 1 chrIII:8734764-8734844 ( 66) TTGCATCA 1 chrIII:13455925-13456005 ( 26) TTGCATCA 1 chrIV:9500222-9500302 ( 28) TTGCATCA 1 chrII:14297209-14297289 ( 30) TTGCATCA 1 chrX:7952431-7952511 ( 43) TTGCATCA 1 chrV:8267406-8267486 ( 27) TTGCATCA 1 chrX:12691493-12691573 ( 60) TTGCATCA 1 chrII:5628619-5628699 ( 25) TTGCATCA 1 chrV:12741864-12741944 ( 22) TTGCATCA 1 chrV:10509016-10509096 ( 12) TTGCATCA 1 chrIV:9718047-9718127 ( 13) TTGCATCA 1 chrIII:10822668-10822748 ( 8) TTGCGTCA 1 chrV:12963333-12963413 ( 40) TTGCGTCA 1 chrV:3805661-3805741 ( 26) TTGCGTCA 1 chrX:13974524-13974604 ( 37) TTTCATCA 1 chrX:12031909-12031989 ( 65) TTTCATCA 1 chrV:10732064-10732144 ( 23) TTTCATCA 1 chrV:4483121-4483201 ( 7) TTTCATCA 1 chrI:10753129-10753209 ( 27) TTTCATCA 1 chrX:6876746-6876826 ( 20) TTTCATCA 1 chrIII:9714852-9714932 ( 19) TTTCATCA 1 chrX:14557804-14557884 ( 37) TTTCATCA 1 chrV:462443-462523 ( 51) TTTCATCA 1 chrV:13358064-13358144 ( 40) TTTCATCA 1 chrI:8798295-8798375 ( 21) TTTCATCA 1 chrII:13469283-13469363 ( 14) TTTCGTCA 1 chrV:5780169-5780249 ( 42) TTTCGTCA 1 chrX:6749731-6749811 ( 21) TTTCGTCA 1 chrII:8485822-8485902 ( 53) TTTCGTCA 1 chrI:6914742-6914822 ( 31) TTTCGTCA 1 chrIV:7633191-7633271 ( 34) TTTCGTCA 1 chrV:11803903-11803983 ( 49) TGGCATCA 1 chrIV:14412818-14412898 ( 29) TGGCATCA 1 chrX:6503454-6503534 ( 22) TTACATCA 1 chrI:5384276-5384356 ( 73) TTACATCA 1 chrX:17140556-17140636 ( 58) TTACATCA 1 chrV:5687710-5687790 ( 54) TTACATCA 1 chrX:2107781-2107861 ( 32) TTACATCA 1 chrIII:6612432-6612512 ( 8) TTACATCA 1 chrIV:11031842-11031922 ( 28) TTACATCA 1 chrI:2121008-2121088 ( 34) TTACATCA 1 chrIV:13786797-13786877 ( 64) TGGCGTCA 1 chrI:1049244-1049324 ( 29) TTACGTCA 1 chrV:15354821-15354901 ( 68) TTACGTCA 1 chrX:3154718-3154798 ( 30) TTACGTCA 1 chrII:13632309-13632389 ( 7) TTGCACCA 1 chrX:4009089-4009169 ( 28) TTGCACCA 1 chrIV:17406260-17406340 ( 23) TGTCATCA 1 chrV:4908727-4908807 ( 28) TGTCATCA 1 chrX:9347777-9347857 ( 20) TGTCGTCA 1 chrX:1394613-1394693 ( 29) TGTCGTCA 1 chrI:9315696-9315776 ( 71) TGACGTCA 1 chrV:4024974-4025054 ( 73) TTTCGCCA 1 chrIV:14576627-14576707 ( 52) TTACACCA 1 chrII:1820043-1820123 ( 19) TGGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.48684 E= 1.3e-035 -1262 -1262 -1262 164 -1262 -1262 -34 141 -64 -1262 130 12 -1262 250 -1262 -1262 115 -1262 66 -1262 -1262 -115 -1262 152 -1262 250 -1262 -1262 164 -1262 -1262 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 1.3e-035 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.206349 0.000000 0.444444 0.349206 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 0.079365 0.000000 0.920635 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-1 regular expression -------------------------------------------------------------------------------- TT[GTA]C[AG]TCA -------------------------------------------------------------------------------- Time 5.23 secs. ******************************************************************************** ******************************************************************************** MOTIF TGATGHAA MEME-2 width = 8 sites = 48 llr = 421 E-value = 4.8e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATGHAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::4a9 pos.-specific C :::1:3:: probability G :a::a::1 matrix T a::9:3:: bits 2.5 * * 2.3 * * 2.0 * * 1.8 *** * * Relative 1.5 *** * * Entropy 1.3 ***** ** (12.7 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel TGATGAAA consensus C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGHAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5213633-5213713 23 1.97e-05 GTGTTGCCAA TGATGCAA AAATGAATTT chrV:534283-534363 27 1.97e-05 ACAGTTTTTA TGATGCAA TTTTTCCATT chrV:9078981-9079061 40 1.97e-05 GAAATAATTC TGATGCAA CCCTGACTCC chrV:10399448-10399528 30 1.97e-05 ATAACTAGAG TGATGCAA CTTCAAATTT chrV:5780839-5780919 31 1.97e-05 TTGCGAGAGA TGATGCAA TAGGCCCTGC chrX:3114801-3114881 57 1.97e-05 GAAAAAAAAA TGATGCAA TAGGCAAGAT chrV:211901-211981 31 1.97e-05 TGTGAAATAG TGATGCAA AAAGGTTCAA chrIV:9651333-9651413 41 1.97e-05 TAAGAAGGCA TGATGCAA ATTCTTTAGT chrX:6517542-6517622 51 1.97e-05 TAGTGATTTA TGATGCAA ATCGTAATCA chrII:13954214-13954294 35 1.97e-05 AAACATAATA TGATGCAA TTTTAGTTGG chrV:12410531-12410611 37 1.97e-05 GATTTTATTA TGATGCAA CTTATTTTTC chrIV:7633191-7633271 44 1.97e-05 TTTCGTCAGA TGATGCAA ATATGTTTTA chrIII:7947264-7947344 45 1.97e-05 AAAAATGATC TGATGCAA CAAGTAAACA chrI:8867584-8867664 73 5.53e-05 TTCCGAAAAA TGATGAAA chrV:14410067-14410147 62 5.53e-05 CAGACATTTC TGATGAAA CTACCTTTTA chrI:8852617-8852697 26 5.53e-05 TGGAAAAAAG TGATGAAA TATACAACAA chrI:13138882-13138962 44 5.53e-05 GTTATCAATA TGATGAAA TTTAACACCC chrX:7825757-7825837 34 5.53e-05 TTGAGTCATC TGATGAAA TAGATTGTCT chrX:4007901-4007981 51 5.53e-05 ATAGACACAA TGATGAAA AAACTCACAT chrX:6749731-6749811 37 5.53e-05 CATATTTTTG TGATGAAA AAAGTCTGCC chrV:1629520-1629600 59 5.53e-05 GACGACACAA TGATGAAA AATATAGTGA chrV:4642861-4642941 31 5.53e-05 GATAATCAGA TGATGAAA TTGATTTTTT chrX:1148625-1148705 67 5.53e-05 GCGAGTTAGA TGATGAAA TTTATG chrX:14947201-14947281 58 5.53e-05 CACTATGGTA TGATGAAA ATCGAAATAT chrV:1134528-1134608 23 9.11e-05 TTGGATAATA TGATGTAA ATTTTCTGAA chrIV:291926-292006 30 9.11e-05 AGTATAAGGG TGATGTAA TATCACATGG chrX:12878113-12878193 39 9.11e-05 TTTTCAAAGA TGATGTAA TCACCGTCAC chrX:12172857-12172937 3 9.11e-05 TC TGATGTAA TGTATTGAAA chrII:7332192-7332272 54 9.11e-05 ACTGGTCAGA TGATGTAA TGACAATCGG chrX:6250388-6250468 17 9.11e-05 tCCCACGGGA TGATGTAA TCCTTCGCGG chrX:11661755-11661835 38 9.11e-05 GTTGTGTGAA TGATGTAA TATGATAAGA chrX:6905709-6905789 66 9.11e-05 CTTATCAGGA TGATGTAA TGCAAAC chrX:14946548-14946628 30 9.11e-05 TGCCGACATA TGATGTAA ATGGGGTACT chrV:8025391-8025471 68 9.11e-05 ATTTGCACGC TGATGTAA GATTG chrIV:9514304-9514384 52 9.11e-05 CGTACAATAA TGATGTAA TATGTGGAAA chrV:9756418-9756498 46 9.11e-05 ATGATTGATA TGATGTAA ACTAGGTGAT chrV:10509016-10509096 33 9.11e-05 GGTTGAAGAG TGATGTAA TTTATCACCC chrV:4862913-4862993 70 1.02e-04 ACGATAGAAA TGACGCAA TTT chrV:12921857-12921937 55 1.22e-04 AAATTATAGA TGACGAAA TTGATAAGGA chrI:12503049-12503129 58 1.22e-04 TCGAGTGAGG TGACGAAA TGATGAAGAG chrX:13355237-13355317 30 1.22e-04 TTGCAGTATC TGACGAAA TCATCCTCGC chrIII:5502992-5503072 7 1.22e-04 GTCAAG TGACGAAA CATACAAATA chrV:10590251-10590331 64 1.22e-04 TTAAAAATAA TGACGAAA TGCAAAATA chrX:4016635-4016715 39 1.33e-04 AATCATATGA TGATGCAG CATCAGTTGA chrI:2121008-2121088 53 1.33e-04 ACTCATAAGA TGATGCAG ATTTCATATA chrX:12501055-12501135 46 1.52e-04 ACATGCCATG TGACGTAA TGATCTGACA chrV:9571303-9571383 58 1.72e-04 TTTTGTCATA TGATGAAG GAACAGATAC chrV:11803903-11803983 62 1.72e-04 CATCAGGGGT TGATGAAG CAAATCCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGHAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5213633-5213713 2e-05 22_[+2]_50 chrV:534283-534363 2e-05 26_[+2]_46 chrV:9078981-9079061 2e-05 39_[+2]_33 chrV:10399448-10399528 2e-05 29_[+2]_43 chrV:5780839-5780919 2e-05 30_[+2]_42 chrX:3114801-3114881 2e-05 56_[+2]_16 chrV:211901-211981 2e-05 30_[+2]_42 chrIV:9651333-9651413 2e-05 40_[+2]_32 chrX:6517542-6517622 2e-05 50_[+2]_22 chrII:13954214-13954294 2e-05 34_[+2]_38 chrV:12410531-12410611 2e-05 36_[+2]_36 chrIV:7633191-7633271 2e-05 43_[+2]_29 chrIII:7947264-7947344 2e-05 44_[+2]_28 chrI:8867584-8867664 5.5e-05 72_[+2] chrV:14410067-14410147 5.5e-05 61_[+2]_11 chrI:8852617-8852697 5.5e-05 25_[+2]_47 chrI:13138882-13138962 5.5e-05 43_[+2]_29 chrX:7825757-7825837 5.5e-05 33_[+2]_39 chrX:4007901-4007981 5.5e-05 50_[+2]_22 chrX:6749731-6749811 5.5e-05 36_[+2]_36 chrV:1629520-1629600 5.5e-05 58_[+2]_14 chrV:4642861-4642941 5.5e-05 30_[+2]_42 chrX:1148625-1148705 5.5e-05 66_[+2]_6 chrX:14947201-14947281 5.5e-05 57_[+2]_15 chrV:1134528-1134608 9.1e-05 22_[+2]_50 chrIV:291926-292006 9.1e-05 29_[+2]_43 chrX:12878113-12878193 9.1e-05 38_[+2]_34 chrX:12172857-12172937 9.1e-05 2_[+2]_70 chrII:7332192-7332272 9.1e-05 53_[+2]_19 chrX:6250388-6250468 9.1e-05 16_[+2]_56 chrX:11661755-11661835 9.1e-05 37_[+2]_35 chrX:6905709-6905789 9.1e-05 65_[+2]_7 chrX:14946548-14946628 9.1e-05 29_[+2]_43 chrV:8025391-8025471 9.1e-05 67_[+2]_5 chrIV:9514304-9514384 9.1e-05 51_[+2]_21 chrV:9756418-9756498 9.1e-05 45_[+2]_27 chrV:10509016-10509096 9.1e-05 32_[+2]_40 chrV:4862913-4862993 0.0001 69_[+2]_3 chrV:12921857-12921937 0.00012 54_[+2]_18 chrI:12503049-12503129 0.00012 57_[+2]_15 chrX:13355237-13355317 0.00012 29_[+2]_43 chrIII:5502992-5503072 0.00012 6_[+2]_66 chrV:10590251-10590331 0.00012 63_[+2]_9 chrX:4016635-4016715 0.00013 38_[+2]_34 chrI:2121008-2121088 0.00013 52_[+2]_20 chrX:12501055-12501135 0.00015 45_[+2]_27 chrV:9571303-9571383 0.00017 57_[+2]_15 chrV:11803903-11803983 0.00017 61_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGHAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATGHAA width=8 seqs=48 chrX:5213633-5213713 ( 23) TGATGCAA 1 chrV:534283-534363 ( 27) TGATGCAA 1 chrV:9078981-9079061 ( 40) TGATGCAA 1 chrV:10399448-10399528 ( 30) TGATGCAA 1 chrV:5780839-5780919 ( 31) TGATGCAA 1 chrX:3114801-3114881 ( 57) TGATGCAA 1 chrV:211901-211981 ( 31) TGATGCAA 1 chrIV:9651333-9651413 ( 41) TGATGCAA 1 chrX:6517542-6517622 ( 51) TGATGCAA 1 chrII:13954214-13954294 ( 35) TGATGCAA 1 chrV:12410531-12410611 ( 37) TGATGCAA 1 chrIV:7633191-7633271 ( 44) TGATGCAA 1 chrIII:7947264-7947344 ( 45) TGATGCAA 1 chrI:8867584-8867664 ( 73) TGATGAAA 1 chrV:14410067-14410147 ( 62) TGATGAAA 1 chrI:8852617-8852697 ( 26) TGATGAAA 1 chrI:13138882-13138962 ( 44) TGATGAAA 1 chrX:7825757-7825837 ( 34) TGATGAAA 1 chrX:4007901-4007981 ( 51) TGATGAAA 1 chrX:6749731-6749811 ( 37) TGATGAAA 1 chrV:1629520-1629600 ( 59) TGATGAAA 1 chrV:4642861-4642941 ( 31) TGATGAAA 1 chrX:1148625-1148705 ( 67) TGATGAAA 1 chrX:14947201-14947281 ( 58) TGATGAAA 1 chrV:1134528-1134608 ( 23) TGATGTAA 1 chrIV:291926-292006 ( 30) TGATGTAA 1 chrX:12878113-12878193 ( 39) TGATGTAA 1 chrX:12172857-12172937 ( 3) TGATGTAA 1 chrII:7332192-7332272 ( 54) TGATGTAA 1 chrX:6250388-6250468 ( 17) TGATGTAA 1 chrX:11661755-11661835 ( 38) TGATGTAA 1 chrX:6905709-6905789 ( 66) TGATGTAA 1 chrX:14946548-14946628 ( 30) TGATGTAA 1 chrV:8025391-8025471 ( 68) TGATGTAA 1 chrIV:9514304-9514384 ( 52) TGATGTAA 1 chrV:9756418-9756498 ( 46) TGATGTAA 1 chrV:10509016-10509096 ( 33) TGATGTAA 1 chrV:4862913-4862993 ( 70) TGACGCAA 1 chrV:12921857-12921937 ( 55) TGACGAAA 1 chrI:12503049-12503129 ( 58) TGACGAAA 1 chrX:13355237-13355317 ( 30) TGACGAAA 1 chrIII:5502992-5503072 ( 7) TGACGAAA 1 chrV:10590251-10590331 ( 64) TGACGAAA 1 chrX:4016635-4016715 ( 39) TGATGCAG 1 chrI:2121008-2121088 ( 53) TGATGCAG 1 chrX:12501055-12501135 ( 46) TGACGTAA 1 chrV:9571303-9571383 ( 58) TGATGAAG 1 chrV:11803903-11803983 ( 62) TGATGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGHAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.66841 E= 4.8e-024 -1223 -1223 -1223 164 -1223 -1223 247 -1223 164 -1223 -1223 -1223 -1223 -28 -1223 141 -1223 -1223 247 -1223 22 91 -1223 -14 164 -1223 -1223 -1223 151 -1223 -111 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGHAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 4.8e-024 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.145833 0.000000 0.854167 0.000000 0.000000 1.000000 0.000000 0.375000 0.333333 0.000000 0.291667 1.000000 0.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATGHAA MEME-2 regular expression -------------------------------------------------------------------------------- TGATG[ACT]AA -------------------------------------------------------------------------------- Time 9.07 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGCGTC MEME-3 width = 8 sites = 13 llr = 131 E-value = 5.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C :a::8129 probability G :::a29:1 matrix T 8:a:::8: bits 2.5 * * 2.3 * * 2.0 * *** * 1.8 ***** * Relative 1.5 ***** * Entropy 1.3 ***** * (14.6 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCTGCGTC consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:14883906-14883986 54 6.00e-06 CCAATTCCTG TCTGCGTC TCTCGCATTC chrV:532156-532236 40 6.00e-06 TGCAATAGTG TCTGCGTC TCTCTTTTCA chrII:6839107-6839187 1 6.00e-06 . TCTGCGTC CGGTCGTCGA chrIV:14414334-14414414 17 6.00e-06 GTTGTGTGTG TCTGCGTC TCTTCACTTT chrV:5081102-5081182 10 6.00e-06 GTGTAGCCG TCTGCGTC TATTCCTTAA chrX:14946548-14946628 53 9.30e-06 GTACTGTTCG TCTGCGCC TCTTCACGTT chrII:6928539-6928619 17 1.53e-05 TTCGTGTTAT ACTGCGTC ATATCATGTG chrI:6942972-6943052 41 1.53e-05 ACGTACCAAA ACTGCGTC TAATCATTTT chrIV:15476557-15476637 5 2.47e-05 ACCG ACTGCGCC ACGCATGCAT chrV:5764011-5764091 9 2.47e-05 AGATTTTC TCTGGGTC TCTTCGTGTG chrI:2126844-2126924 55 2.47e-05 ACTCACTCCA TCTGGGTC TCCTTCTAGA chrX:6749731-6749811 49 4.00e-05 ATGAAAAAAG TCTGCCTC AATGGTATTA chrX:3256933-3257013 24 5.27e-05 CTCCGACCGT TCTGCGCG GAGTCATATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:14883906-14883986 6e-06 53_[+3]_19 chrV:532156-532236 6e-06 39_[+3]_33 chrII:6839107-6839187 6e-06 [+3]_72 chrIV:14414334-14414414 6e-06 16_[+3]_56 chrV:5081102-5081182 6e-06 9_[+3]_63 chrX:14946548-14946628 9.3e-06 52_[+3]_20 chrII:6928539-6928619 1.5e-05 16_[+3]_56 chrI:6942972-6943052 1.5e-05 40_[+3]_32 chrIV:15476557-15476637 2.5e-05 4_[+3]_68 chrV:5764011-5764091 2.5e-05 8_[+3]_64 chrI:2126844-2126924 2.5e-05 54_[+3]_18 chrX:6749731-6749811 4e-05 48_[+3]_24 chrX:3256933-3257013 5.3e-05 23_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGCGTC width=8 seqs=13 chrIV:14883906-14883986 ( 54) TCTGCGTC 1 chrV:532156-532236 ( 40) TCTGCGTC 1 chrII:6839107-6839187 ( 1) TCTGCGTC 1 chrIV:14414334-14414414 ( 17) TCTGCGTC 1 chrV:5081102-5081182 ( 10) TCTGCGTC 1 chrX:14946548-14946628 ( 53) TCTGCGCC 1 chrII:6928539-6928619 ( 17) ACTGCGTC 1 chrI:6942972-6943052 ( 41) ACTGCGTC 1 chrIV:15476557-15476637 ( 5) ACTGCGCC 1 chrV:5764011-5764091 ( 9) TCTGGGTC 1 chrI:2126844-2126924 ( 55) TCTGGGTC 1 chrX:6749731-6749811 ( 49) TCTGCCTC 1 chrX:3256933-3257013 ( 24) TCTGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 5.7e+000 -48 -1035 -1035 126 -1035 250 -1035 -1035 -1035 -1035 -1035 163 -1035 -1035 247 -1035 -1035 226 -23 -1035 -1035 -120 236 -1035 -1035 38 -1035 126 -1035 238 -123 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.7e+000 0.230769 0.000000 0.000000 0.769231 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.846154 0.153846 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.230769 0.000000 0.769231 0.000000 0.923077 0.076923 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 regular expression -------------------------------------------------------------------------------- [TA]CTGCG[TC]C -------------------------------------------------------------------------------- Time 12.61 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCGCAA MEME-4 width = 8 sites = 10 llr = 106 E-value = 1.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCGCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::aa pos.-specific C :::a:a:: probability G 1:::a::: matrix T 9aa::::: bits 2.5 *** 2.3 *** 2.0 *** 1.8 ******* Relative 1.5 ******* Entropy 1.3 ******** (15.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTTCGCAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10576575-10576655 8 1.94e-05 GGTTATA TTTCGCAA TCCATATTTC chrIV:13633341-13633421 20 1.94e-05 ATTACAGTTA TTTCGCAA CATAAACAAT chrV:16160212-16160292 43 1.94e-05 TCAGAGACTA TTTCGCAA TATTTCAAAA chrII:1820043-1820123 9 1.94e-05 TTTTAAAA TTTCGCAA TATGGCGCCA chrV:10938850-10938930 35 1.94e-05 TTGCGGAATA TTTCGCAA TCGGTCAAGA chrIII:8734764-8734844 55 1.94e-05 GTTGTAATTT TTTCGCAA TTATTGCATC chrV:5081102-5081182 40 1.94e-05 TTAGGAAATA TTTCGCAA CAGTCAAAGG chrIII:1284731-1284811 55 1.94e-05 ATTGCATATT TTTCGCAA AAGGTTGCGT chrV:4042031-4042111 19 1.94e-05 TGGCGCAATA TTTCGCAA TACATTTGGG chrX:16695313-16695393 55 3.02e-05 CCCATCATAG GTTCGCAA AATCTAATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10576575-10576655 1.9e-05 7_[+4]_65 chrIV:13633341-13633421 1.9e-05 19_[+4]_53 chrV:16160212-16160292 1.9e-05 42_[+4]_30 chrII:1820043-1820123 1.9e-05 8_[+4]_64 chrV:10938850-10938930 1.9e-05 34_[+4]_38 chrIII:8734764-8734844 1.9e-05 54_[+4]_18 chrV:5081102-5081182 1.9e-05 39_[+4]_33 chrIII:1284731-1284811 1.9e-05 54_[+4]_18 chrV:4042031-4042111 1.9e-05 18_[+4]_54 chrX:16695313-16695393 3e-05 54_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCGCAA width=8 seqs=10 chrX:10576575-10576655 ( 8) TTTCGCAA 1 chrIV:13633341-13633421 ( 20) TTTCGCAA 1 chrV:16160212-16160292 ( 43) TTTCGCAA 1 chrII:1820043-1820123 ( 9) TTTCGCAA 1 chrV:10938850-10938930 ( 35) TTTCGCAA 1 chrIII:8734764-8734844 ( 55) TTTCGCAA 1 chrV:5081102-5081182 ( 40) TTTCGCAA 1 chrIII:1284731-1284811 ( 55) TTTCGCAA 1 chrV:4042031-4042111 ( 19) TTTCGCAA 1 chrX:16695313-16695393 ( 55) GTTCGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2669 E= 1.9e+002 -997 -997 -85 148 -997 -997 -997 163 -997 -997 -997 163 -997 250 -997 -997 -997 -997 247 -997 -997 250 -997 -997 164 -997 -997 -997 164 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.9e+002 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGCAA MEME-4 regular expression -------------------------------------------------------------------------------- TTTCGCAA -------------------------------------------------------------------------------- Time 16.13 secs. ******************************************************************************** ******************************************************************************** MOTIF TCWTATCA MEME-5 width = 8 sites = 37 llr = 295 E-value = 2.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCWTATCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::4:a::9 pos.-specific C 18::::7: probability G :2::::31 matrix T 9:6a:a:: bits 2.5 2.3 2.0 1.8 * **** Relative 1.5 * **** Entropy 1.3 ** ***** (11.5 bits) 1.0 ** ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCTTATCA consensus GA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWTATCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5317776-5317856 50 3.47e-05 AATCTTCTTT TCTTATCA GTTTTTCTTC chrIII:6962245-6962325 49 3.47e-05 TATGTATTTC TCTTATCA TCTGTTTCTA chrI:8963285-8963365 41 3.47e-05 AAATCGAACA TCTTATCA ATGTATGGAA chrV:10087301-10087381 30 3.47e-05 CAGTTCACCC TCTTATCA ATTTCTCAAA chrIV:13919370-13919450 9 3.47e-05 GCTTCTTA TCTTATCA ACAACTGCAC chrIV:14414334-14414414 59 3.47e-05 AATTTTCTTA TCTTATCA CTTATCGTCT chrIV:9500222-9500302 36 3.47e-05 CTTTGCATCA TCTTATCA GTTGACTTAT chrIII:9714852-9714932 42 3.47e-05 CATTGTGTGT TCTTATCA CAAGACGAAT chrIV:17406260-17406340 63 3.47e-05 TATCGTTTTC TCTTATCA GTTGAAAAAT chrX:12691493-12691573 68 3.47e-05 TTTTGCATCA TCTTATCA ACGAT chrV:10103946-10104026 44 3.47e-05 ACCAGAGTCA TCTTATCA GTCATTGGTG chrX:13348583-13348663 15 6.93e-05 TTTGAACCAA TCATATCA TCAAGTCATT chrX:14947201-14947281 42 6.93e-05 ACAATAAAAA TCATATCA CTATGGTATG chrX:6271859-6271939 11 1.05e-04 TTCAGATCAA TCTTATGA TTCTAATTGT chrX:5213633-5213713 56 1.40e-04 ATTTGAGCTC TGTTATCA ACCTCGTAAA chrII:10134432-10134512 18 1.40e-04 AAACAAATAT TGTTATCA GTGGGTTCAA chrI:13138882-13138962 33 1.40e-04 GAAGTTAGAG TGTTATCA ATATGATGAA chrX:8473591-8473671 28 1.40e-04 TACGTGAGCA TGTTATCA GTTCACAATC chrX:4009089-4009169 6 1.40e-04 CGGTC TGTTATCA TTGCACAATC chrII:6839107-6839187 41 1.75e-04 GGCCTCCCCG TCATATGA CGCGGCAAAC chrIII:12919851-12919931 42 1.75e-04 TTCCGTATAG TCATATGA TGACAGTATA chrI:2019479-2019559 4 1.75e-04 CCC TCATATGA CATACCAGTT chrX:4016635-4016715 31 1.75e-04 CTCACTCAAA TCATATGA TGATGCAGCA chrX:6876746-6876826 36 1.75e-04 catcttggca tcatatga ctgatcttta chrV:16726100-16726180 61 1.75e-04 ACAGTGTGAA TCATATGA CGTGGCTTTT chrV:10590251-10590331 19 1.75e-04 AATGTCGTTG TCATATGA TGTTTTTGGA chrX:7952431-7952511 35 1.75e-04 CATGTGAACA TCATATGA TTGCATCACA chrII:2420868-2420948 57 1.75e-04 AGTTGATAAC TCATATGA CGATGATGAT chrX:3842700-3842780 22 1.95e-04 AGCTTATCAC TCTTATCG CGAAGCTATT chrIII:8400619-8400699 20 1.95e-04 CGCAATAAAC TCTTATCG TATTTCTACA chrV:10732064-10732144 70 2.14e-04 AGGGACCATT CCTTATCA GTA chrV:9078981-9079061 3 2.14e-04 AA CCTTATCA CTCATTAGGT chrIII:6612432-6612512 33 2.14e-04 TTAAAACCCA CCTTATCA TTTTTCCTGC chrV:15298785-15298865 48 2.49e-04 TCACCTTCGT TGATATCA TCATTATGAA chrIV:9514304-9514384 73 2.49e-04 GTGGAAATAG TGATATCA chrII:14297209-14297289 48 2.68e-04 TCTAACCCCG TCATATCG TTCATTAGAC chrX:4007901-4007981 13 4.18e-04 ACCGTGTGTC TGTTATCG TTTTCTCACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWTATCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5317776-5317856 3.5e-05 49_[+5]_23 chrIII:6962245-6962325 3.5e-05 48_[+5]_24 chrI:8963285-8963365 3.5e-05 40_[+5]_32 chrV:10087301-10087381 3.5e-05 29_[+5]_43 chrIV:13919370-13919450 3.5e-05 8_[+5]_64 chrIV:14414334-14414414 3.5e-05 58_[+5]_14 chrIV:9500222-9500302 3.5e-05 35_[+5]_37 chrIII:9714852-9714932 3.5e-05 41_[+5]_31 chrIV:17406260-17406340 3.5e-05 62_[+5]_10 chrX:12691493-12691573 3.5e-05 67_[+5]_5 chrV:10103946-10104026 3.5e-05 43_[+5]_29 chrX:13348583-13348663 6.9e-05 14_[+5]_58 chrX:14947201-14947281 6.9e-05 41_[+5]_31 chrX:6271859-6271939 0.0001 10_[+5]_62 chrX:5213633-5213713 0.00014 55_[+5]_17 chrII:10134432-10134512 0.00014 17_[+5]_55 chrI:13138882-13138962 0.00014 32_[+5]_40 chrX:8473591-8473671 0.00014 27_[+5]_45 chrX:4009089-4009169 0.00014 5_[+5]_67 chrII:6839107-6839187 0.00018 40_[+5]_32 chrIII:12919851-12919931 0.00018 41_[+5]_31 chrI:2019479-2019559 0.00018 3_[+5]_69 chrX:4016635-4016715 0.00018 30_[+5]_42 chrX:6876746-6876826 0.00018 35_[+5]_37 chrV:16726100-16726180 0.00018 60_[+5]_12 chrV:10590251-10590331 0.00018 18_[+5]_54 chrX:7952431-7952511 0.00018 34_[+5]_38 chrII:2420868-2420948 0.00018 56_[+5]_16 chrX:3842700-3842780 0.00019 21_[+5]_51 chrIII:8400619-8400699 0.00019 19_[+5]_53 chrV:10732064-10732144 0.00021 69_[+5]_3 chrV:9078981-9079061 0.00021 2_[+5]_70 chrIII:6612432-6612512 0.00021 32_[+5]_40 chrV:15298785-15298865 0.00025 47_[+5]_25 chrIV:9514304-9514384 0.00025 72_[+5] chrII:14297209-14297289 0.00027 47_[+5]_25 chrX:4007901-4007981 0.00042 12_[+5]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWTATCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCWTATCA width=8 seqs=37 chrIII:5317776-5317856 ( 50) TCTTATCA 1 chrIII:6962245-6962325 ( 49) TCTTATCA 1 chrI:8963285-8963365 ( 41) TCTTATCA 1 chrV:10087301-10087381 ( 30) TCTTATCA 1 chrIV:13919370-13919450 ( 9) TCTTATCA 1 chrIV:14414334-14414414 ( 59) TCTTATCA 1 chrIV:9500222-9500302 ( 36) TCTTATCA 1 chrIII:9714852-9714932 ( 42) TCTTATCA 1 chrIV:17406260-17406340 ( 63) TCTTATCA 1 chrX:12691493-12691573 ( 68) TCTTATCA 1 chrV:10103946-10104026 ( 44) TCTTATCA 1 chrX:13348583-13348663 ( 15) TCATATCA 1 chrX:14947201-14947281 ( 42) TCATATCA 1 chrX:6271859-6271939 ( 11) TCTTATGA 1 chrX:5213633-5213713 ( 56) TGTTATCA 1 chrII:10134432-10134512 ( 18) TGTTATCA 1 chrI:13138882-13138962 ( 33) TGTTATCA 1 chrX:8473591-8473671 ( 28) TGTTATCA 1 chrX:4009089-4009169 ( 6) TGTTATCA 1 chrII:6839107-6839187 ( 41) TCATATGA 1 chrIII:12919851-12919931 ( 42) TCATATGA 1 chrI:2019479-2019559 ( 4) TCATATGA 1 chrX:4016635-4016715 ( 31) TCATATGA 1 chrX:6876746-6876826 ( 36) TCATATGA 1 chrV:16726100-16726180 ( 61) TCATATGA 1 chrV:10590251-10590331 ( 19) TCATATGA 1 chrX:7952431-7952511 ( 35) TCATATGA 1 chrII:2420868-2420948 ( 57) TCATATGA 1 chrX:3842700-3842780 ( 22) TCTTATCG 1 chrIII:8400619-8400699 ( 20) TCTTATCG 1 chrV:10732064-10732144 ( 70) CCTTATCA 1 chrV:9078981-9079061 ( 3) CCTTATCA 1 chrIII:6612432-6612512 ( 33) CCTTATCA 1 chrV:15298785-15298865 ( 48) TGATATCA 1 chrIV:9514304-9514384 ( 73) TGATATCA 1 chrII:14297209-14297289 ( 48) TCATATCG 1 chrX:4007901-4007981 ( 13) TGTTATCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWTATCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 2.8e+002 -1185 -112 -1185 151 -1185 215 26 -1185 24 -1185 -1185 95 -1185 -1185 -1185 164 164 -1185 -1185 -1185 -1185 -1185 -1185 164 -1185 205 58 -1185 147 -1185 -74 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWTATCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 2.8e+002 0.000000 0.081081 0.000000 0.918919 0.000000 0.783784 0.216216 0.000000 0.378378 0.000000 0.000000 0.621622 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.729730 0.270270 0.000000 0.891892 0.000000 0.108108 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWTATCA MEME-5 regular expression -------------------------------------------------------------------------------- T[CG][TA]TAT[CG]A -------------------------------------------------------------------------------- Time 19.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:9718047-9718127 1.82e-02 12_[+1(1.94e-05)]_60 chrV:10509016-10509096 2.56e-03 11_[+1(1.94e-05)]_13_[+2(9.11e-05)]_\ 40 chrV:3805661-3805741 2.30e-03 25_[+1(3.03e-05)]_47 chrX:14947201-14947281 7.75e-03 41_[+5(6.93e-05)]_8_[+2(5.53e-05)]_\ 15 chrII:2420868-2420948 1.56e-01 80 chrIII:7947264-7947344 5.70e-02 44_[+2(1.97e-05)]_28 chrV:12963333-12963413 1.09e-02 39_[+1(3.03e-05)]_33 chrI:2121008-2121088 4.91e-03 80 chrV:12741864-12741944 5.38e-03 21_[+1(1.94e-05)]_51 chrIV:14412818-14412898 3.14e-02 28_[+1(9.53e-05)]_44 chrIII:5581203-5581283 9.50e-02 80 chrI:8798295-8798375 8.32e-02 20_[+1(6.50e-05)]_52 chrX:1148625-1148705 5.57e-02 66_[+2(5.53e-05)]_6 chrIV:7633191-7633271 1.08e-03 33_[+1(8.44e-05)]_2_[+2(1.97e-05)]_\ 29 chrX:1394613-1394693 4.31e-02 80 chrV:9756418-9756498 3.08e-03 45_[+2(9.11e-05)]_27 chrIV:11031842-11031922 3.46e-02 80 chrI:6914742-6914822 1.79e-02 30_[+1(8.44e-05)]_42 chrV:12410531-12410611 2.45e-02 36_[+2(1.97e-05)]_36 chrX:3154718-3154798 9.51e-02 80 chrIV:9514304-9514384 7.42e-03 51_[+2(9.11e-05)]_21 chrV:10103946-10104026 9.28e-02 43_[+5(3.47e-05)]_29 chrX:3256933-3257013 6.30e-03 23_[+3(5.27e-05)]_49 chrV:16395315-16395395 4.24e-02 40_[+4(1.94e-05)]_2_[+4(1.94e-05)]_\ 22 chrV:4042031-4042111 1.18e-02 18_[+4(1.94e-05)]_54 chrV:13358064-13358144 5.48e-02 39_[+1(6.50e-05)]_33 chrV:4642861-4642941 8.65e-03 30_[+2(5.53e-05)]_42 chrII:8421036-8421116 4.80e-01 80 chrX:6059481-6059561 2.01e-01 80 chrI:5811599-5811679 8.14e-01 80 chrM:11914-11994 9.32e-01 80 chrIII:6612432-6612512 3.02e-02 80 chrII:9157285-9157365 1.12e-01 80 chrV:4908727-4908807 6.59e-02 80 chrV:123611-123691 1.35e-01 80 chrIII:1284731-1284811 6.55e-03 54_[+4(1.94e-05)]_18 chrII:5628619-5628699 4.07e-03 24_[+1(1.94e-05)]_48 chrV:1629520-1629600 7.45e-02 58_[+2(5.53e-05)]_14 chrX:5355680-5355760 3.14e-01 80 chrV:8025391-8025471 1.38e-02 67_[+2(9.11e-05)]_5 chrX:12691493-12691573 6.67e-04 59_[+1(1.94e-05)]_[+5(3.47e-05)]_5 chrIV:17406260-17406340 8.27e-03 62_[+5(3.47e-05)]_10 chrV:11803903-11803983 6.17e-03 48_[+1(9.53e-05)]_24 chrII:13954214-13954294 1.75e-02 34_[+2(1.97e-05)]_38 chrV:8267406-8267486 1.64e-02 26_[+1(1.94e-05)]_46 chrX:4009089-4009169 1.24e-03 80 chrV:462443-462523 4.46e-03 50_[+1(6.50e-05)]_22 chrX:7952431-7952511 1.40e-03 42_[+1(1.94e-05)]_30 chrM:695-775 9.42e-01 80 chrX:14946548-14946628 1.17e-03 29_[+2(9.11e-05)]_15_[+3(9.30e-06)]_\ 20 chrII:6366881-6366961 2.23e-01 80 chrX:10341182-10341262 5.21e-01 80 chrII:8420437-8420517 9.53e-01 80 chrIII:8400619-8400699 6.47e-02 80 chrX:9035285-9035365 3.26e-01 80 chrV:15052541-15052621 4.62e-01 80 chrV:5081102-5081182 5.10e-05 9_[+3(6.00e-06)]_22_[+4(1.94e-05)]_\ 33 chrIV:12282456-12282536 2.54e-01 80 chrX:14557804-14557884 3.70e-03 36_[+1(6.50e-05)]_36 chrX:13060123-13060203 6.84e-01 80 chrV:10590251-10590331 1.38e-02 80 chrV:16726100-16726180 1.79e-01 80 chrIII:9714852-9714932 2.76e-03 18_[+1(6.50e-05)]_15_[+5(3.47e-05)]_\ 31 chrII:14297209-14297289 7.97e-03 29_[+1(1.94e-05)]_43 chrIII:12426132-12426212 6.91e-01 80 chrIV:9500222-9500302 6.74e-04 27_[+1(1.94e-05)]_[+5(3.47e-05)]_37 chrII:8485822-8485902 7.75e-03 52_[+1(8.44e-05)]_20 chrIII:1308340-1308420 2.16e-01 80 chrX:6517542-6517622 3.72e-02 50_[+2(1.97e-05)]_22 chrM:13134-13214 9.94e-01 80 chrV:10937488-10937568 4.14e-01 80 chrIII:13455925-13456005 5.33e-03 25_[+1(1.94e-05)]_47 chrIV:9716663-9716743 3.96e-01 80 chrX:6749731-6749811 3.63e-05 20_[+1(8.44e-05)]_8_[+2(5.53e-05)]_\ 4_[+3(4.00e-05)]_24 chrV:4889665-4889745 2.68e-01 80 chrIII:8734764-8734844 1.19e-04 54_[+4(1.94e-05)]_3_[+1(1.94e-05)]_\ 7 chrV:15354821-15354901 5.70e-02 80 chrM:4060-4140 6.87e-01 80 chrM:6827-6907 8.25e-02 80 chrIV:12029924-12030004 2.05e-01 80 chrM:13599-13679 8.21e-01 80 chrV:10938850-10938930 4.91e-02 34_[+4(1.94e-05)]_38 chrV:4862913-4862993 1.77e-02 80 chrX:4007901-4007981 1.38e-04 31_[+1(1.94e-05)]_11_[+2(5.53e-05)]_\ 22 chrIV:9651333-9651413 5.33e-04 2_[+1(1.94e-05)]_30_[+2(1.97e-05)]_\ 32 chrV:5780169-5780249 4.73e-02 41_[+1(8.44e-05)]_31 chrM:7873-7953 4.25e-01 80 chrV:15880717-15880797 2.08e-04 38_[+1(1.94e-05)]_34 chrX:6274393-6274473 2.12e-02 80 chrIV:17288052-17288132 8.94e-03 33_[+1(1.94e-05)]_39 chrX:13348583-13348663 9.50e-04 14_[+5(6.93e-05)]_58 chrM:10430-10510 7.19e-01 80 chrV:5131608-5131688 1.97e-01 80 chrX:8473591-8473671 3.40e-02 80 chrII:13834999-13835079 4.12e-01 80 chrX:2107781-2107861 1.14e-01 80 chrII:13468019-13468099 1.48e-02 19_[+1(1.94e-05)]_53 chrX:6792715-6792795 3.34e-01 80 chrX:4142794-4142874 2.60e-03 27_[+1(1.94e-05)]_45 chrX:6905709-6905789 1.54e-02 65_[+2(9.11e-05)]_7 chrIII:1279359-1279439 5.59e-02 80 chrIII:4015794-4015874 4.70e-01 80 chrIII:5502992-5503072 6.11e-02 80 chrIV:13783688-13783768 4.31e-01 80 chrIV:14445268-14445348 9.32e-01 80 chrM:2641-2721 9.42e-01 80 chrX:11661755-11661835 9.36e-02 37_[+2(9.11e-05)]_35 chrI:2126844-2126924 1.53e-02 54_[+3(2.47e-05)]_18 chrX:7825757-7825837 5.26e-03 33_[+2(5.53e-05)]_39 chrV:5687710-5687790 1.70e-01 80 chrX:6876746-6876826 2.65e-03 19_[+1(6.50e-05)]_3_[+1(9.53e-05)]_\ 42 chrX:6250388-6250468 1.72e-01 16_[+2(9.11e-05)]_56 chrV:211901-211981 4.43e-02 30_[+2(1.97e-05)]_42 chrX:3114801-3114881 1.57e-01 56_[+2(1.97e-05)]_16 chrV:5780839-5780919 4.45e-02 30_[+2(1.97e-05)]_42 chrX:4016635-4016715 1.10e-02 80 chrV:4024974-4025054 1.10e-02 80 chrM:209-289 9.99e-01 80 chrI:13138882-13138962 6.03e-03 43_[+2(5.53e-05)]_29 chrI:8852617-8852697 2.80e-01 25_[+2(5.53e-05)]_47 chrIII:8689872-8689952 2.72e-01 80 chrIV:13786797-13786877 3.50e-02 80 chrII:1820043-1820123 5.48e-03 8_[+4(1.94e-05)]_64 chrIV:14414334-14414414 1.92e-04 16_[+3(6.00e-06)]_34_[+5(3.47e-05)]_\ 14 chrX:3842700-3842780 5.33e-02 80 chrIV:2798519-2798599 3.60e-01 80 chrII:13632309-13632389 1.13e-01 80 chrX:17140556-17140636 3.62e-03 62_[+5(6.93e-05)]_10 chrIV:12400161-12400241 8.71e-01 80 chrIV:12215475-12215555 2.54e-01 80 chrI:2019479-2019559 2.49e-01 80 chrIV:14413571-14413651 7.52e-01 80 chrI:1049244-1049324 4.50e-02 80 chrX:16695313-16695393 3.74e-02 54_[+4(3.02e-05)]_18 chrII:6345435-6345515 1.63e-01 80 chrI:9322545-9322625 2.21e-01 80 chrIII:12919851-12919931 7.35e-02 80 chrV:12733570-12733650 1.32e-01 80 chrII:7332192-7332272 8.91e-03 53_[+2(9.11e-05)]_19 chrV:10399448-10399528 4.63e-02 29_[+2(1.97e-05)]_43 chrM:9793-9873 9.10e-01 80 chrI:10753129-10753209 2.00e-03 26_[+1(6.50e-05)]_46 chrII:8487614-8487694 6.71e-01 80 chrX:15983446-15983526 5.62e-02 80 chrX:7200657-7200737 4.27e-02 5_[+3(8.68e-05)]_67 chrM:5600-5680 8.98e-01 80 chrV:9571303-9571383 1.58e-02 80 chrV:4483121-4483201 1.72e-02 6_[+1(6.50e-05)]_66 chrX:12172857-12172937 7.63e-02 2_[+2(9.11e-05)]_70 chrV:9078981-9079061 2.13e-03 39_[+2(1.97e-05)]_33 chrIII:5916153-5916233 7.09e-02 51_[+4(6.02e-05)]_21 chrIV:8453274-8453354 3.92e-01 80 chrX:14476774-14476854 5.81e-02 80 chrIV:13639114-13639194 8.98e-01 80 chrX:7661023-7661103 3.49e-01 80 chrII:12050687-12050767 8.77e-02 80 chrX:15222026-15222106 6.86e-01 80 chrX:11974843-11974923 8.54e-01 80 chrV:10732064-10732144 3.15e-04 22_[+1(6.50e-05)]_50 chrI:5810186-5810266 5.04e-01 80 chrI:6942972-6943052 1.19e-02 40_[+3(1.53e-05)]_32 chrIV:13370505-13370585 9.45e-01 80 chrI:6364836-6364916 6.19e-02 80 chrX:13355237-13355317 3.33e-02 80 chrII:6839107-6839187 1.20e-03 [+3(6.00e-06)]_72 chrIV:15037137-15037217 2.17e-01 80 chrI:9315696-9315776 1.30e-01 80 chrI:12503049-12503129 3.09e-01 80 chrX:6271859-6271939 6.40e-03 80 chrIV:5667329-5667409 1.94e-01 66_[+3(9.35e-05)]_6 chrV:7760369-7760449 4.42e-01 80 chrV:532156-532236 3.04e-03 39_[+3(6.00e-06)]_33 chrIV:13919370-13919450 2.63e-02 8_[+5(3.47e-05)]_64 chrX:12031909-12031989 1.04e-02 64_[+1(6.50e-05)]_8 chrX:13311877-13311957 1.14e-01 80 chrII:6897697-6897777 6.23e-01 80 chrIV:6555115-6555195 1.08e-01 80 chrV:534283-534363 3.74e-02 26_[+2(1.97e-05)]_46 chrII:14407877-14407957 7.54e-01 80 chrIV:12527333-12527413 7.06e-01 80 chrII:10134432-10134512 1.20e-01 80 chrV:20413644-20413724 5.84e-01 80 chrV:16160212-16160292 8.00e-02 11_[+4(6.02e-05)]_23_[+4(1.94e-05)]_\ 30 chrIII:12325493-12325573 9.14e-02 80 chrI:5384276-5384356 6.34e-02 80 chrII:4943008-4943088 7.28e-01 80 chrX:12878113-12878193 3.03e-02 38_[+2(9.11e-05)]_34 chrI:8022725-8022805 1.00e+00 80 chrV:5764011-5764091 8.31e-02 8_[+3(2.47e-05)]_64 chrIV:13777610-13777690 4.00e-01 80 chrIV:14576627-14576707 4.28e-01 80 chrIV:13633341-13633421 2.69e-02 19_[+4(1.94e-05)]_53 chrX:6503454-6503534 1.76e-01 80 chrX:11008240-11008320 5.30e-01 80 chrIV:13727969-13728049 5.32e-01 80 chrV:12921857-12921937 1.63e-02 80 chrX:11924319-11924399 1.20e-01 80 chrII:13469283-13469363 6.72e-02 13_[+1(8.44e-05)]_59 chrV:14410067-14410147 5.73e-02 61_[+2(5.53e-05)]_11 chrIV:14883906-14883986 8.14e-03 53_[+3(6.00e-06)]_19 chrIV:14013839-14013919 8.33e-01 80 chrIV:13701580-13701660 9.88e-01 80 chrV:10087301-10087381 1.49e-02 29_[+5(3.47e-05)]_43 chrX:9090778-9090858 4.68e-01 80 chrI:8963285-8963365 4.50e-02 40_[+5(3.47e-05)]_32 chrIII:5938069-5938149 1.29e-02 62_[+1(1.94e-05)]_10 chrIV:12209175-12209255 6.70e-01 80 chrX:12501055-12501135 3.79e-02 80 chrII:12768407-12768487 4.65e-01 80 chrM:11435-11515 9.65e-01 80 chrII:6928539-6928619 5.46e-04 16_[+3(1.53e-05)]_56 chrIII:6962245-6962325 2.49e-02 48_[+5(3.47e-05)]_24 chrI:8867584-8867664 3.63e-02 72_[+2(5.53e-05)] chrV:9985014-9985094 9.87e-01 80 chrIV:13313818-13313898 9.69e-01 80 chrIV:14116314-14116394 1.60e-01 80 chrIII:5317776-5317856 2.26e-03 15_[+1(1.94e-05)]_26_[+5(3.47e-05)]_\ 23 chrIV:13253980-13254060 2.14e-01 80 chrX:9347777-9347857 1.31e-01 80 chrI:5308244-5308324 6.90e-01 80 chrI:9882295-9882375 8.79e-01 80 chrV:15298785-15298865 1.28e-01 80 chrX:4208670-4208750 2.16e-01 80 chrX:5213633-5213713 1.77e-03 22_[+2(1.97e-05)]_50 chrIV:8199953-8200033 5.27e-01 80 chrIII:10822668-10822748 1.90e-02 7_[+1(3.03e-05)]_65 chrIV:4745594-4745674 2.60e-02 80 chrX:13974524-13974604 4.88e-02 36_[+1(6.50e-05)]_36 chrX:14979028-14979108 6.58e-01 80 chrV:5576160-5576240 9.94e-01 80 chrIV:9371249-9371329 3.77e-02 80 chrV:7848433-7848513 2.10e-01 80 chrIV:291926-292006 9.46e-02 29_[+2(9.11e-05)]_43 chrX:13401487-13401567 6.02e-01 80 chrM:3624-3704 6.59e-01 80 chrIII:5201347-5201427 2.58e-01 80 chrIV:13322590-13322670 7.59e-01 80 chrIII:7081654-7081734 1.72e-01 80 chrX:15281406-15281486 6.19e-01 80 chrX:10677613-10677693 9.92e-01 80 chrIV:15476557-15476637 3.94e-02 4_[+3(2.47e-05)]_68 chrX:8549052-8549132 9.84e-01 80 chrX:10576575-10576655 1.40e-02 7_[+4(1.94e-05)]_65 chrX:10124392-10124472 9.69e-01 80 chrIV:14656827-14656907 5.86e-01 80 chrII:11756974-11757054 9.89e-01 80 chrI:5373682-5373762 7.28e-01 80 chrIII:7375633-7375713 6.93e-01 80 chrM:11163-11243 5.74e-01 80 chrV:1134528-1134608 6.73e-03 22_[+2(9.11e-05)]_50 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************