******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:11638783-11638863 1.0000 80 chrI:1225396-1225476 1.0000 80 chrI:3567627-3567707 1.0000 80 chrX:5106272-5106352 1.0000 80 chrV:6226580-6226660 1.0000 80 chrV:6278469-6278549 1.0000 80 chrI:10462707-10462787 1.0000 80 chrV:20873316-20873396 1.0000 80 chrV:13567210-13567290 1.0000 80 chrIII:12658878-12658958 1.0000 80 chrII:2378654-2378734 1.0000 80 chrII:4130422-4130502 1.0000 80 chrX:15668229-15668309 1.0000 80 chrIII:6133576-6133656 1.0000 80 chrX:4147813-4147893 1.0000 80 chrX:642718-642798 1.0000 80 chrI:297472-297552 1.0000 80 chrV:20164548-20164628 1.0000 80 chrV:6326609-6326689 1.0000 80 chrIII:11921785-11921865 1.0000 80 chrIII:4626360-4626440 1.0000 80 chrIV:2993456-2993536 1.0000 80 chrX:1503817-1503897 1.0000 80 chrIII:445587-445667 1.0000 80 chrIII:13546689-13546769 1.0000 80 chrV:4823896-4823976 1.0000 80 chrV:13908807-13908887 1.0000 80 chrIII:3699376-3699456 1.0000 80 chrIII:5230677-5230757 1.0000 80 chrI:7059645-7059725 1.0000 80 chrII:5339961-5340041 1.0000 80 chrX:3567020-3567100 1.0000 80 chrI:7656745-7656825 1.0000 80 chrIII:9783290-9783370 1.0000 80 chrV:14354515-14354595 1.0000 80 chrIII:7733335-7733415 1.0000 80 chrX:4969380-4969460 1.0000 80 chrIII:1951725-1951805 1.0000 80 chrIII:10214628-10214708 1.0000 80 chrIII:6462762-6462842 1.0000 80 chrII:8747484-8747564 1.0000 80 chrX:17030675-17030755 1.0000 80 chrIII:9052663-9052743 1.0000 80 chrV:12320446-12320526 1.0000 80 chrIII:8161193-8161273 1.0000 80 chrII:14600041-14600121 1.0000 80 chrII:10555627-10555707 1.0000 80 chrIII:11689481-11689561 1.0000 80 chrX:6254051-6254131 1.0000 80 chrI:4769661-4769741 1.0000 80 chrIII:13720544-13720624 1.0000 80 chrI:299815-299895 1.0000 80 chrIII:12568313-12568393 1.0000 80 chrV:13658783-13658863 1.0000 80 chrI:12551218-12551298 1.0000 80 chrIII:13464651-13464731 1.0000 80 chrI:638311-638391 1.0000 80 chrIII:5506246-5506326 1.0000 80 chrX:15629784-15629864 1.0000 80 chrX:4606713-4606793 1.0000 80 chrI:1701313-1701393 1.0000 80 chrIII:1420047-1420127 1.0000 80 chrV:5272916-5272996 1.0000 80 chrX:8017308-8017388 1.0000 80 chrII:10547485-10547565 1.0000 80 chrIV:2711121-2711201 1.0000 80 chrX:11603444-11603524 1.0000 80 chrII:8747705-8747785 1.0000 80 chrIII:2172045-2172125 1.0000 80 chrX:12872419-12872499 1.0000 80 chrII:6891287-6891367 1.0000 80 chrI:7872328-7872408 1.0000 80 chrII:11756921-11757001 1.0000 80 chrV:13907730-13907810 1.0000 80 chrV:8936295-8936375 1.0000 80 chrIV:2709665-2709745 1.0000 80 chrX:2368664-2368744 1.0000 80 chrV:13090560-13090640 1.0000 80 chrV:726068-726148 1.0000 80 chrIV:11956475-11956555 1.0000 80 chrIII:12607497-12607577 1.0000 80 chrII:13198222-13198302 1.0000 80 chrX:8019826-8019906 1.0000 80 chrIII:12549867-12549947 1.0000 80 chrIV:5591279-5591359 1.0000 80 chrIV:16170793-16170873 1.0000 80 chrX:7989455-7989535 1.0000 80 chrIV:11147106-11147186 1.0000 80 chrI:4911641-4911721 1.0000 80 chrIII:8864215-8864295 1.0000 80 chrIV:15931971-15932051 1.0000 80 chrV:20729022-20729102 1.0000 80 chrIV:11149119-11149199 1.0000 80 chrX:14476863-14476943 1.0000 80 chrV:16593077-16593157 1.0000 80 chrI:7079361-7079441 1.0000 80 chrII:2861402-2861482 1.0000 80 chrIII:5950027-5950107 1.0000 80 chrII:10851275-10851355 1.0000 80 chrI:296086-296166 1.0000 80 chrI:2671694-2671774 1.0000 80 chrX:4193390-4193470 1.0000 80 chrIV:16491703-16491783 1.0000 80 chrII:6346815-6346895 1.0000 80 chrII:7757002-7757082 1.0000 80 chrIII:11830720-11830800 1.0000 80 chrIII:8797366-8797446 1.0000 80 chrIV:17281321-17281401 1.0000 80 chrX:14229553-14229633 1.0000 80 chrX:3092723-3092803 1.0000 80 chrII:4922641-4922721 1.0000 80 chrV:15590275-15590355 1.0000 80 chrII:6347820-6347900 1.0000 80 chrV:1261847-1261927 1.0000 80 chrIV:3384775-3384855 1.0000 80 chrIV:14594265-14594345 1.0000 80 chrIII:9805093-9805173 1.0000 80 chrI:1251564-1251644 1.0000 80 chrII:12798937-12799017 1.0000 80 chrX:15275502-15275582 1.0000 80 chrIV:4026090-4026170 1.0000 80 chrX:1909503-1909583 1.0000 80 chrIII:1616606-1616686 1.0000 80 chrX:16796959-16797039 1.0000 80 chrIII:1785950-1786030 1.0000 80 chrX:6750281-6750361 1.0000 80 chrV:8247793-8247873 1.0000 80 chrIII:8686016-8686096 1.0000 80 chrIII:8443767-8443847 1.0000 80 chrII:7529260-7529340 1.0000 80 chrX:11644067-11644147 1.0000 80 chrIII:1926586-1926666 1.0000 80 chrI:6727893-6727973 1.0000 80 chrI:6835587-6835667 1.0000 80 chrII:8016883-8016963 1.0000 80 chrI:2878559-2878639 1.0000 80 chrI:2586150-2586230 1.0000 80 chrX:1389591-1389671 1.0000 80 chrI:1050965-1051045 1.0000 80 chrII:9603586-9603666 1.0000 80 chrI:1070050-1070130 1.0000 80 chrV:11573019-11573099 1.0000 80 chrX:6254340-6254420 1.0000 80 chrIV:13318951-13319031 1.0000 80 chrI:6838159-6838239 1.0000 80 chrX:17505922-17506002 1.0000 80 chrIV:8527808-8527888 1.0000 80 chrV:4190307-4190387 1.0000 80 chrV:14850773-14850853 1.0000 80 chrV:9318281-9318361 1.0000 80 chrI:7872533-7872613 1.0000 80 chrII:10549250-10549330 1.0000 80 chrV:7432879-7432959 1.0000 80 chrI:9381780-9381860 1.0000 80 chrX:13105090-13105170 1.0000 80 chrX:7181794-7181874 1.0000 80 chrV:19430682-19430762 1.0000 80 chrI:315195-315275 1.0000 80 chrIII:7977572-7977652 1.0000 80 chrIII:11066887-11066967 1.0000 80 chrII:13780861-13780941 1.0000 80 chrV:9790000-9790080 1.0000 80 chrIII:13694122-13694202 1.0000 80 chrII:3439420-3439500 1.0000 80 chrIV:866949-867029 1.0000 80 chrV:10715945-10716025 1.0000 80 chrII:8020806-8020886 1.0000 80 chrII:10016192-10016272 1.0000 80 chrI:7057011-7057091 1.0000 80 chrV:9786755-9786835 1.0000 80 chrIV:4727996-4728076 1.0000 80 chrI:7021380-7021460 1.0000 80 chrI:12736788-12736868 1.0000 80 chrX:15607631-15607711 1.0000 80 chrII:8790008-8790088 1.0000 80 chrIII:6421203-6421283 1.0000 80 chrIV:295844-295924 1.0000 80 chrIV:6097248-6097328 1.0000 80 chrII:5181670-5181750 1.0000 80 chrIV:4468394-4468474 1.0000 80 chrIV:7984061-7984141 1.0000 80 chrII:13460848-13460928 1.0000 80 chrV:12510130-12510210 1.0000 80 chrIV:2602145-2602225 1.0000 80 chrIII:10534282-10534362 1.0000 80 chrX:6522844-6522924 1.0000 80 chrV:14200271-14200351 1.0000 80 chrIII:7338678-7338758 1.0000 80 chrV:727728-727808 1.0000 80 chrX:16961556-16961636 1.0000 80 chrIII:7335317-7335397 1.0000 80 chrV:10961646-10961726 1.0000 80 chrIV:11822020-11822100 1.0000 80 chrIV:6336819-6336899 1.0000 80 chrIII:1625887-1625967 1.0000 80 chrIV:10252480-10252560 1.0000 80 chrIII:835967-836047 1.0000 80 chrX:4532241-4532321 1.0000 80 chrV:11177087-11177167 1.0000 80 chrX:12500883-12500963 1.0000 80 chrIV:13395465-13395545 1.0000 80 chrIII:11090195-11090275 1.0000 80 chrII:2974019-2974099 1.0000 80 chrII:6842855-6842935 1.0000 80 chrIII:5940892-5940972 1.0000 80 chrX:16931485-16931565 1.0000 80 chrIII:9054029-9054109 1.0000 80 chrI:1873938-1874018 1.0000 80 chrV:19529326-19529406 1.0000 80 chrX:2364868-2364948 1.0000 80 chrII:11759438-11759518 1.0000 80 chrX:17544529-17544609 1.0000 80 chrIII:1923633-1923713 1.0000 80 chrX:6252389-6252469 1.0000 80 chrI:12995795-12995875 1.0000 80 chrI:3822810-3822890 1.0000 80 chrIII:5943911-5943991 1.0000 80 chrII:12102564-12102644 1.0000 80 chrIV:12032524-12032604 1.0000 80 chrX:4606477-4606557 1.0000 80 chrV:11532262-11532342 1.0000 80 chrI:5379950-5380030 1.0000 80 chrV:14849716-14849796 1.0000 80 chrIV:4469895-4469975 1.0000 80 chrV:14055212-14055292 1.0000 80 chrV:7728315-7728395 1.0000 80 chrX:15354067-15354147 1.0000 80 chrX:15200856-15200936 1.0000 80 chrX:6255801-6255881 1.0000 80 chrX:12890006-12890086 1.0000 80 chrIV:2219603-2219683 1.0000 80 chrII:8441705-8441785 1.0000 80 chrIII:11792735-11792815 1.0000 80 chrX:15568424-15568504 1.0000 80 chrIII:3456373-3456453 1.0000 80 chrIII:8904205-8904285 1.0000 80 chrV:11764506-11764586 1.0000 80 chrV:6100783-6100863 1.0000 80 chrII:14018245-14018325 1.0000 80 chrX:16930921-16931001 1.0000 80 chrII:18971-19051 1.0000 80 chrX:4962383-4962463 1.0000 80 chrI:12654639-12654719 1.0000 80 chrI:16999-17079 1.0000 80 chrIII:836166-836246 1.0000 80 chrIV:8795279-8795359 1.0000 80 chrV:18967792-18967872 1.0000 80 chrII:12678227-12678307 1.0000 80 chrV:12968172-12968252 1.0000 80 chrX:2553574-2553654 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ztf-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.266 C 0.227 G 0.225 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.266 C 0.227 G 0.225 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-1 width = 8 sites = 29 llr = 259 E-value = 7.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C :::::::: probability G 9:a:7:8: matrix T 1a:93a2a bits 2.2 1.9 * 1.7 ** * * 1.5 *** *** Relative 1.3 ******** Entropy 1.1 ******** (12.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:12654639-12654719 22 1.60e-05 AGAAACACTC GTGTGTGT TCTGCGAGAA chrX:15568424-15568504 44 1.60e-05 TTTGCGATGA GTGTGTGT TGGCACGCTC chrX:4606477-4606557 67 1.60e-05 gtgtgtgtgt gtgtgtgt gtgtgt chrX:16961556-16961636 6 1.60e-05 tgtat gtgtgtgt aagtgtgtgt chrX:6750281-6750361 55 1.60e-05 TCAGCAAAAA GTGTGTGT GACGAAATGG chrI:1251564-1251644 19 1.60e-05 gtgtgtgtgt gtgtgtgt gtgtgtgtCG chrX:14229553-14229633 70 1.60e-05 gtgtgtgtgt gtgtgtgt gtg chrIV:16491703-16491783 47 1.60e-05 gtgtgtgtgt gtgtgtgt gCTCTACCGC chrIII:2172045-2172125 48 1.60e-05 GTACATGTGC GTGTGTGT GAGAGAGTAC chrIII:445587-445667 69 1.60e-05 CGGTCtgtgt gtgtgtgt gtgt chrIV:2993456-2993536 55 1.60e-05 gtgtgtgtgt gtgtgtgt ATGACTGCGT chrIII:6133576-6133656 48 1.60e-05 gtgtgtgtgc gtgtgtgt atgtgtgtgG chrII:4130422-4130502 26 1.60e-05 gtgtgtgtgt gtgtgtgt gtgtgtgtTG chrI:3567627-3567707 61 1.60e-05 gtgtgtgtgt gtgtgtgt gtgtgtgtgt chrV:11638783-11638863 69 1.60e-05 gtgtgtgtgt gtgtgtgt gtCA chrIV:5591279-5591359 62 3.59e-05 AAAACTTCAC GTGTTTGT CTTTTTGCTG chrII:14600041-14600121 67 3.59e-05 AAAGATAGAG GTGTTTGT TTGTGT chrIV:16170793-16170873 23 5.11e-05 TGTATACGAA GTGAGTGT CTTGGAAAGC chrV:13567210-13567290 53 5.11e-05 AAGGACCGCC GTGAGTGT GAAGAGGATG chrII:2861402-2861482 39 7.10e-05 ACTAAAAGTG GTGTGTTT TACGTTTTTT chrIII:11689481-11689561 8 9.10e-05 GAGATAG TTGTGTGT TATCAATGAT chrX:12890006-12890086 67 1.35e-04 TTTTCTTGCT GTGTTTTT TGTTAA chrII:8747484-8747564 51 1.35e-04 GTGGATTCAG GTGTTTTT ATATGAAAAT chrIV:6097248-6097328 35 1.76e-04 CTCACACATT GTCTGTGT ATATGTGAGT chrI:7872328-7872408 21 1.76e-04 CCTCACACAC TTGTTTGT TGTTTTTCAG chrX:3567020-3567100 67 1.76e-04 TTATTCATTT TTGTTTGT TATAAT chrIII:3699376-3699456 30 1.76e-04 GAAATTCGTT TTGTTTGT AATGAAGCCG chrI:6838159-6838239 30 1.95e-04 TTGATTAGGC GTGAGTTT ATCGAATTTT chrIII:1616606-1616686 38 2.82e-04 CCATAGGCAT GTGATTTT TACAAaaaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:12654639-12654719 1.6e-05 21_[+1]_51 chrX:15568424-15568504 1.6e-05 43_[+1]_29 chrX:4606477-4606557 1.6e-05 66_[+1]_6 chrX:16961556-16961636 1.6e-05 5_[+1]_67 chrX:6750281-6750361 1.6e-05 54_[+1]_18 chrI:1251564-1251644 1.6e-05 18_[+1]_54 chrX:14229553-14229633 1.6e-05 69_[+1]_3 chrIV:16491703-16491783 1.6e-05 46_[+1]_26 chrIII:2172045-2172125 1.6e-05 47_[+1]_25 chrIII:445587-445667 1.6e-05 68_[+1]_4 chrIV:2993456-2993536 1.6e-05 54_[+1]_18 chrIII:6133576-6133656 1.6e-05 47_[+1]_25 chrII:4130422-4130502 1.6e-05 25_[+1]_47 chrI:3567627-3567707 1.6e-05 60_[+1]_12 chrV:11638783-11638863 1.6e-05 68_[+1]_4 chrIV:5591279-5591359 3.6e-05 61_[+1]_11 chrII:14600041-14600121 3.6e-05 66_[+1]_6 chrIV:16170793-16170873 5.1e-05 22_[+1]_50 chrV:13567210-13567290 5.1e-05 52_[+1]_20 chrII:2861402-2861482 7.1e-05 38_[+1]_34 chrIII:11689481-11689561 9.1e-05 7_[+1]_65 chrX:12890006-12890086 0.00013 66_[+1]_6 chrII:8747484-8747564 0.00013 50_[+1]_22 chrIV:6097248-6097328 0.00018 34_[+1]_38 chrI:7872328-7872408 0.00018 20_[+1]_52 chrX:3567020-3567100 0.00018 66_[+1]_6 chrIII:3699376-3699456 0.00018 29_[+1]_43 chrI:6838159-6838239 0.00019 29_[+1]_43 chrIII:1616606-1616686 0.00028 37_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=29 chrI:12654639-12654719 ( 22) GTGTGTGT 1 chrX:15568424-15568504 ( 44) GTGTGTGT 1 chrX:4606477-4606557 ( 67) GTGTGTGT 1 chrX:16961556-16961636 ( 6) GTGTGTGT 1 chrX:6750281-6750361 ( 55) GTGTGTGT 1 chrI:1251564-1251644 ( 19) GTGTGTGT 1 chrX:14229553-14229633 ( 70) GTGTGTGT 1 chrIV:16491703-16491783 ( 47) GTGTGTGT 1 chrIII:2172045-2172125 ( 48) GTGTGTGT 1 chrIII:445587-445667 ( 69) GTGTGTGT 1 chrIV:2993456-2993536 ( 55) GTGTGTGT 1 chrIII:6133576-6133656 ( 48) GTGTGTGT 1 chrII:4130422-4130502 ( 26) GTGTGTGT 1 chrI:3567627-3567707 ( 61) GTGTGTGT 1 chrV:11638783-11638863 ( 69) GTGTGTGT 1 chrIV:5591279-5591359 ( 62) GTGTTTGT 1 chrII:14600041-14600121 ( 67) GTGTTTGT 1 chrIV:16170793-16170873 ( 23) GTGAGTGT 1 chrV:13567210-13567290 ( 53) GTGAGTGT 1 chrII:2861402-2861482 ( 39) GTGTGTTT 1 chrIII:11689481-11689561 ( 8) TTGTGTGT 1 chrX:12890006-12890086 ( 67) GTGTTTTT 1 chrII:8747484-8747564 ( 51) GTGTTTTT 1 chrIV:6097248-6097328 ( 35) GTCTGTGT 1 chrI:7872328-7872408 ( 21) TTGTTTGT 1 chrX:3567020-3567100 ( 67) TTGTTTGT 1 chrIII:3699376-3699456 ( 30) TTGTTTGT 1 chrI:6838159-6838239 ( 30) GTGAGTTT 1 chrIII:1616606-1616686 ( 38) GTGATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 7.4e-006 -1150 -1150 194 -103 -1150 -1150 -1150 183 -1150 -272 210 -1150 -95 -1150 -1150 161 -1150 -1150 169 -3 -1150 -1150 -1150 183 -1150 -1150 188 -71 -1150 -1150 -1150 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 7.4e-006 0.000000 0.000000 0.862069 0.137931 0.000000 0.000000 0.000000 1.000000 0.000000 0.034483 0.965517 0.000000 0.137931 0.000000 0.000000 0.862069 0.000000 0.000000 0.724138 0.275862 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.827586 0.172414 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 regular expression -------------------------------------------------------------------------------- GTGT[GT]TGT -------------------------------------------------------------------------------- Time 7.67 secs. ******************************************************************************** ******************************************************************************** MOTIF GRRAGAGA MEME-2 width = 8 sites = 26 llr = 228 E-value = 8.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRRAGAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :73a:a:7 pos.-specific C ::2::::2 probability G a35:a:a: matrix T :::::::1 bits 2.2 * * * 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.3 * **** Entropy 1.1 ** **** (12.6 bits) 0.9 ** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus GA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15354067-15354147 49 1.28e-05 gagagagagt gagagaga aagaaagcga chrI:12736788-12736868 41 1.28e-05 gagagagaga gagagaga ggataagaca chrI:1070050-1070130 56 1.28e-05 gagagagaga gagagaga gagagagaaa chrX:15275502-15275582 56 1.28e-05 CAACGTGGGA GAGAGAGA CCAGACTGTG chrIV:3384775-3384855 66 1.28e-05 TGCTGAGGCA GAGAGAGA AAGTGAG chrIII:12549867-12549947 69 1.28e-05 TTGCGAGAGA GAGAGAGA TAGT chrX:6255801-6255881 16 2.37e-05 TGTACTCAGC GGGAGAGA TAAACGAGCA chrII:11759438-11759518 26 3.89e-05 CATTATAAGA GAAAGAGA CGGCCGACAG chrIV:6097248-6097328 53 3.89e-05 ATATGTGAGT GAAAGAGA GTGTGAGAGA chrV:4823896-4823976 55 3.89e-05 AATGTATTGC GAAAGAGA CGAAGCGTAT chrI:16999-17079 32 4.98e-05 TCAGCACGCG GAGAGAGC CACGAGAAAT chrII:2974019-2974099 62 4.98e-05 GTGGAAGAGT GAGAGAGC GCGAGAGAAC chrIV:11822020-11822100 47 4.98e-05 GCCGGCCGAT GAGAGAGC GCGTGCCGCC chrIV:4026090-4026170 16 6.27e-05 CCAAGAGGCA GACAGAGA CCCGGGGGGG chrX:4969380-4969460 1 6.27e-05 . GACAGAGA TGCGACTATG chrX:12500883-12500963 19 7.56e-05 AAAGAAAGCA GGAAGAGA CGGTTGATTG chrII:5181670-5181750 57 7.56e-05 AAATGGAAAA GGAAGAGA CCCCGAGAGC chrIII:7733335-7733415 39 7.56e-05 ATGCTCAACT GGAAGAGA CCGTTTCGAA chrX:12872419-12872499 68 9.58e-05 CAGAAAATAA GGCAGAGA CATAG chrIII:10214628-10214708 18 9.58e-05 AGTTTGGAGC GGCAGAGA AGTCCCGGAA chrIII:11921785-11921865 19 1.09e-04 AACTCCACGA GAAAGAGC CCACTCCGAA chrII:18971-19051 62 1.22e-04 ACGGGAATGT GAGAGAGT ATGACGATTC chrIII:2172045-2172125 56 1.22e-04 GCGTGTGTGT GAGAGAGT ACGAGAGAAG chrII:13198222-13198302 27 1.44e-04 AATGGGGAAA GGAAGAGC GCAAGTCGAA chrV:14850773-14850853 23 1.56e-04 ATTGAAGGAA GGGAGAGT CACCTGAGGG chrIII:11792735-11792815 63 1.65e-04 ATAGCTCAGT GGCAGAGC GTCTGTCTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15354067-15354147 1.3e-05 48_[+2]_24 chrI:12736788-12736868 1.3e-05 40_[+2]_32 chrI:1070050-1070130 1.3e-05 55_[+2]_17 chrX:15275502-15275582 1.3e-05 55_[+2]_17 chrIV:3384775-3384855 1.3e-05 65_[+2]_7 chrIII:12549867-12549947 1.3e-05 68_[+2]_4 chrX:6255801-6255881 2.4e-05 15_[+2]_57 chrII:11759438-11759518 3.9e-05 25_[+2]_47 chrIV:6097248-6097328 3.9e-05 52_[+2]_20 chrV:4823896-4823976 3.9e-05 54_[+2]_18 chrI:16999-17079 5e-05 31_[+2]_41 chrII:2974019-2974099 5e-05 61_[+2]_11 chrIV:11822020-11822100 5e-05 46_[+2]_26 chrIV:4026090-4026170 6.3e-05 15_[+2]_57 chrX:4969380-4969460 6.3e-05 [+2]_72 chrX:12500883-12500963 7.6e-05 18_[+2]_54 chrII:5181670-5181750 7.6e-05 56_[+2]_16 chrIII:7733335-7733415 7.6e-05 38_[+2]_34 chrX:12872419-12872499 9.6e-05 67_[+2]_5 chrIII:10214628-10214708 9.6e-05 17_[+2]_55 chrIII:11921785-11921865 0.00011 18_[+2]_54 chrII:18971-19051 0.00012 61_[+2]_11 chrIII:2172045-2172125 0.00012 55_[+2]_17 chrII:13198222-13198302 0.00014 26_[+2]_46 chrV:14850773-14850853 0.00016 22_[+2]_50 chrIII:11792735-11792815 0.00017 62_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRRAGAGA width=8 seqs=26 chrX:15354067-15354147 ( 49) GAGAGAGA 1 chrI:12736788-12736868 ( 41) GAGAGAGA 1 chrI:1070050-1070130 ( 56) GAGAGAGA 1 chrX:15275502-15275582 ( 56) GAGAGAGA 1 chrIV:3384775-3384855 ( 66) GAGAGAGA 1 chrIII:12549867-12549947 ( 69) GAGAGAGA 1 chrX:6255801-6255881 ( 16) GGGAGAGA 1 chrII:11759438-11759518 ( 26) GAAAGAGA 1 chrIV:6097248-6097328 ( 53) GAAAGAGA 1 chrV:4823896-4823976 ( 55) GAAAGAGA 1 chrI:16999-17079 ( 32) GAGAGAGC 1 chrII:2974019-2974099 ( 62) GAGAGAGC 1 chrIV:11822020-11822100 ( 47) GAGAGAGC 1 chrIV:4026090-4026170 ( 16) GACAGAGA 1 chrX:4969380-4969460 ( 1) GACAGAGA 1 chrX:12500883-12500963 ( 19) GGAAGAGA 1 chrII:5181670-5181750 ( 57) GGAAGAGA 1 chrIII:7733335-7733415 ( 39) GGAAGAGA 1 chrX:12872419-12872499 ( 68) GGCAGAGA 1 chrIII:10214628-10214708 ( 18) GGCAGAGA 1 chrIII:11921785-11921865 ( 19) GAAAGAGC 1 chrII:18971-19051 ( 62) GAGAGAGT 1 chrIII:2172045-2172125 ( 56) GAGAGAGT 1 chrII:13198222-13198302 ( 27) GGAAGAGC 1 chrV:14850773-14850853 ( 23) GGGAGAGT 1 chrIII:11792735-11792815 ( 63) GGCAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 8.2e-001 -1134 -1134 215 -1134 130 -1134 62 -1134 21 -24 115 -1134 191 -1134 -1134 -1134 -1134 -1134 215 -1134 191 -1134 -1134 -1134 -1134 -1134 215 -1134 130 2 -1134 -129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 8.2e-001 0.000000 0.000000 1.000000 0.000000 0.653846 0.000000 0.346154 0.000000 0.307692 0.192308 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.653846 0.230769 0.000000 0.115385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRAGAGA MEME-2 regular expression -------------------------------------------------------------------------------- G[AG][GA]AGAG[AC] -------------------------------------------------------------------------------- Time 11.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGCGTC MEME-3 width = 8 sites = 14 llr = 139 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :9::a::8 probability G 31:a:a:2 matrix T 7:a:::a: bits 2.2 *** 1.9 *** 1.7 ****** 1.5 ****** Relative 1.3 ******* Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:18967792-18967872 60 1.31e-05 CGTCACTTTC TCTGCGTC TCCACGGGTT chrI:16999-17079 5 1.31e-05 GCTC TCTGCGTC TCTCACCCTT chrIV:2219603-2219683 18 1.31e-05 GCCAAATGTC TCTGCGTC TCTTGCACGT chrIV:4469895-4469975 62 1.31e-05 GCCTTCCATG TCTGCGTC TAGAGCACAA chrIV:2602145-2602225 2 1.31e-05 G TCTGCGTC TCACCAGTGT chrIII:6421203-6421283 19 1.31e-05 GCCCTCACTG TCTGCGTC TCCACGGCGT chrIII:1926586-1926666 2 1.31e-05 C TCTGCGTC TCTCGAACCG chrII:7529260-7529340 14 1.31e-05 ATTACAACTT TCTGCGTC TCTAGATCTT chrI:12551218-12551298 6 1.31e-05 AACAG TCTGCGTC TCACACTTCC chrI:315195-315275 33 2.37e-05 GAGCGCACTT GCTGCGTC ACACGCACTT chrII:2378654-2378734 23 2.37e-05 TTCAGGCGTC GCTGCGTC TAAACCATAT chrIII:1785950-1786030 44 3.67e-05 TCTCTGCATC TCTGCGTG TCTCGACACT chrV:14055212-14055292 9 4.71e-05 AGTACACG GCTGCGTG GCCGATATTT chrX:12500883-12500963 53 9.38e-05 CCGCAGTATA GGTGCGTG AAGGTCACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:18967792-18967872 1.3e-05 59_[+3]_13 chrI:16999-17079 1.3e-05 4_[+3]_68 chrIV:2219603-2219683 1.3e-05 17_[+3]_55 chrIV:4469895-4469975 1.3e-05 61_[+3]_11 chrIV:2602145-2602225 1.3e-05 1_[+3]_71 chrIII:6421203-6421283 1.3e-05 18_[+3]_54 chrIII:1926586-1926666 1.3e-05 1_[+3]_71 chrII:7529260-7529340 1.3e-05 13_[+3]_59 chrI:12551218-12551298 1.3e-05 5_[+3]_67 chrI:315195-315275 2.4e-05 32_[+3]_40 chrII:2378654-2378734 2.4e-05 22_[+3]_50 chrIII:1785950-1786030 3.7e-05 43_[+3]_29 chrV:14055212-14055292 4.7e-05 8_[+3]_64 chrX:12500883-12500963 9.4e-05 52_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGCGTC width=8 seqs=14 chrV:18967792-18967872 ( 60) TCTGCGTC 1 chrI:16999-17079 ( 5) TCTGCGTC 1 chrIV:2219603-2219683 ( 18) TCTGCGTC 1 chrIV:4469895-4469975 ( 62) TCTGCGTC 1 chrIV:2602145-2602225 ( 2) TCTGCGTC 1 chrIII:6421203-6421283 ( 19) TCTGCGTC 1 chrIII:1926586-1926666 ( 2) TCTGCGTC 1 chrII:7529260-7529340 ( 14) TCTGCGTC 1 chrI:12551218-12551298 ( 6) TCTGCGTC 1 chrI:315195-315275 ( 33) GCTGCGTC 1 chrII:2378654-2378734 ( 23) GCTGCGTC 1 chrIII:1785950-1786030 ( 44) TCTGCGTG 1 chrV:14055212-14055292 ( 9) GCTGCGTG 1 chrX:12500883-12500963 ( 53) GGTGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 2.2e+001 -1045 -1045 35 134 -1045 203 -165 -1045 -1045 -1045 -1045 183 -1045 -1045 215 -1045 -1045 214 -1045 -1045 -1045 -1045 215 -1045 -1045 -1045 -1045 183 -1045 179 -7 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.2e+001 0.000000 0.000000 0.285714 0.714286 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.785714 0.214286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 regular expression -------------------------------------------------------------------------------- [TG]CTGCGT[CG] -------------------------------------------------------------------------------- Time 15.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-4 width = 8 sites = 45 llr = 354 E-value = 3.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :6:8:8:8 pos.-specific C a:a271a: probability G :2::3::1 matrix T :1:::1:1 bits 2.2 * 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 * *** * Entropy 1.1 * ****** (11.3 bits) 0.9 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4962383-4962463 59 1.33e-05 cacacacaca cacacaca cacacacaca chrX:4532241-4532321 36 1.33e-05 gacacacact cacacaca cagatacaca chrX:11644067-11644147 47 1.33e-05 cacacacaca cacacaca cacaccacac chrX:15275502-15275582 8 1.33e-05 acacaca cacacaca cacacacaca chrI:1251564-1251644 63 1.33e-05 ctcacacaca cacacaca cacatacaGT chrX:2368664-2368744 4 1.33e-05 aca cacacaca cTATCGATCC chrX:15629784-15629864 15 1.33e-05 cacacacaca cacacaca cacacacaca chrIII:12568313-12568393 18 1.33e-05 cacacacaca cacacaca caTCTTCATT chrI:299815-299895 57 1.33e-05 ACAAGTGCCA CACACACA CTTGAAGAAA chrX:17030675-17030755 55 1.33e-05 cacacacaca cacacaca cacatacaac chrIII:4626360-4626440 12 1.33e-05 cacacacaca cacacaca cacacacaca chrV:20873316-20873396 59 1.33e-05 cacacacaca cacacaca cacacacaca chrX:15354067-15354147 17 3.77e-05 CCCACATCCA CACAGACA AAATAGTCTC chrX:6750281-6750361 18 3.77e-05 TGCGTCCGTC CGCACACA AACATACAAC chrII:4130422-4130502 50 3.77e-05 gtTGTCCCAT CACAGACA AATCAGAGAG chrIV:4469895-4469975 21 4.91e-05 AATTGGGACC CACCCACA GGCCTATTTA chrII:13460848-13460928 3 4.91e-05 ca cacccaca cccaaaacaa chrV:9790000-9790080 35 4.91e-05 ATCTTGTTGG CACCCACA CAAAACTATA chrV:14055212-14055292 68 7.14e-05 GCAGACGCAA CGCAGACA AACAT chrX:16961556-16961636 60 7.14e-05 GCGCAAGAGA CGCAGACA GTACGAGAGG chrII:10851275-10851355 23 7.14e-05 ACCCGAGAGA CGCAGACA CAGTTGACAC chrV:13658783-13658863 13 7.14e-05 CGCTCGTCGC CACACACG CTTTCGCATA chrV:7728315-7728395 32 9.68e-05 GAGACGACGC CACACCCA TCTTTCTTGC chrIV:6097248-6097328 25 9.68e-05 CCATCCCTTT CTCACACA TTGTCTGTGT chrI:7872328-7872408 12 9.68e-05 ATTGTTGCTC CTCACACA CTTGTTTGTT chrX:1909503-1909583 70 1.18e-04 GCAAGCGACA CGCCCACA TGC chrI:9381780-9381860 63 2.01e-04 acagctcact cacactca cgctcacgGA chrIII:8443767-8443847 2 2.01e-04 T CACAGCCA TGTTATTTCT chrIII:1420047-1420127 73 2.01e-04 CTGCGGCGAG CACAGCCA chrX:15668229-15668309 15 2.01e-04 ctacgttgtg cacacact cgtttcacgc chrX:16930921-16931001 9 2.20e-04 TCATCAAG CACCCACG ACGCGCTATT chrII:5181670-5181750 24 2.20e-04 ACCTCGGAGA CGCCGACA CGTCACGCGT chrII:9603586-9603666 67 2.51e-04 GTGACACATA CGCAGACG ACTAAA chrX:16796959-16797039 30 2.51e-04 TAGTGTGAGA CGCAGACG GCTGGCGCCC chrIII:5940892-5940972 70 3.50e-04 CAGTTTTATT CGCACTCA TTT chrV:14200271-14200351 4 3.50e-04 TCT CGCACACT CTCTCGCCCA chrX:6254340-6254420 21 3.50e-04 CATTACCCAT CACACATA CGATGTGGTG chrIII:1785950-1786030 27 3.50e-04 CATTTAAAGG CGCACACT CTCTGCATCT chrIII:13720544-13720624 19 3.50e-04 ATGTCACCAC CACACATA TGCGCACACG chrIII:9052663-9052743 70 3.50e-04 TGATGCGAGA CACACCCG GGC chrIII:11090195-11090275 53 3.93e-04 GGAATTGTGT CACCGACG TTGACCGTCT chrV:6326609-6326689 59 3.93e-04 TGAAAGACAT GACACACA GTTACATCAG chrII:10555627-10555707 18 4.47e-04 ATCACTGCGT CTCCGACA CTCTCTCGTC chrIII:1923633-1923713 65 5.95e-04 AATGTACAAC CTCACTCA TTTGTCTT chrI:12551218-12551298 23 5.95e-04 CTCACACTTC CTCAGCCA TACAGCTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4962383-4962463 1.3e-05 58_[+4]_14 chrX:4532241-4532321 1.3e-05 35_[+4]_37 chrX:11644067-11644147 1.3e-05 46_[+4]_26 chrX:15275502-15275582 1.3e-05 7_[+4]_65 chrI:1251564-1251644 1.3e-05 62_[+4]_10 chrX:2368664-2368744 1.3e-05 3_[+4]_69 chrX:15629784-15629864 1.3e-05 14_[+4]_58 chrIII:12568313-12568393 1.3e-05 17_[+4]_55 chrI:299815-299895 1.3e-05 56_[+4]_16 chrX:17030675-17030755 1.3e-05 54_[+4]_18 chrIII:4626360-4626440 1.3e-05 11_[+4]_61 chrV:20873316-20873396 1.3e-05 58_[+4]_14 chrX:15354067-15354147 3.8e-05 16_[+4]_56 chrX:6750281-6750361 3.8e-05 17_[+4]_55 chrII:4130422-4130502 3.8e-05 49_[+4]_23 chrIV:4469895-4469975 4.9e-05 20_[+4]_52 chrII:13460848-13460928 4.9e-05 2_[+4]_70 chrV:9790000-9790080 4.9e-05 34_[+4]_38 chrV:14055212-14055292 7.1e-05 67_[+4]_5 chrX:16961556-16961636 7.1e-05 59_[+4]_13 chrII:10851275-10851355 7.1e-05 22_[+4]_50 chrV:13658783-13658863 7.1e-05 12_[+4]_60 chrV:7728315-7728395 9.7e-05 31_[+4]_41 chrIV:6097248-6097328 9.7e-05 24_[+4]_48 chrI:7872328-7872408 9.7e-05 11_[+4]_61 chrX:1909503-1909583 0.00012 69_[+4]_3 chrI:9381780-9381860 0.0002 62_[+4]_10 chrIII:8443767-8443847 0.0002 1_[+4]_71 chrIII:1420047-1420127 0.0002 72_[+4] chrX:15668229-15668309 0.0002 14_[+4]_58 chrX:16930921-16931001 0.00022 8_[+4]_64 chrII:5181670-5181750 0.00022 23_[+4]_49 chrII:9603586-9603666 0.00025 66_[+4]_6 chrX:16796959-16797039 0.00025 29_[+4]_43 chrIII:5940892-5940972 0.00035 69_[+4]_3 chrV:14200271-14200351 0.00035 3_[+4]_69 chrX:6254340-6254420 0.00035 20_[+4]_52 chrIII:1785950-1786030 0.00035 26_[+4]_46 chrIII:13720544-13720624 0.00035 18_[+4]_54 chrIII:9052663-9052743 0.00035 69_[+4]_3 chrIII:11090195-11090275 0.00039 52_[+4]_20 chrV:6326609-6326689 0.00039 58_[+4]_14 chrII:10555627-10555707 0.00045 17_[+4]_55 chrIII:1923633-1923713 0.0006 64_[+4]_8 chrI:12551218-12551298 0.0006 22_[+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=45 chrX:4962383-4962463 ( 59) CACACACA 1 chrX:4532241-4532321 ( 36) CACACACA 1 chrX:11644067-11644147 ( 47) CACACACA 1 chrX:15275502-15275582 ( 8) CACACACA 1 chrI:1251564-1251644 ( 63) CACACACA 1 chrX:2368664-2368744 ( 4) CACACACA 1 chrX:15629784-15629864 ( 15) CACACACA 1 chrIII:12568313-12568393 ( 18) CACACACA 1 chrI:299815-299895 ( 57) CACACACA 1 chrX:17030675-17030755 ( 55) CACACACA 1 chrIII:4626360-4626440 ( 12) CACACACA 1 chrV:20873316-20873396 ( 59) CACACACA 1 chrX:15354067-15354147 ( 17) CACAGACA 1 chrX:6750281-6750361 ( 18) CGCACACA 1 chrII:4130422-4130502 ( 50) CACAGACA 1 chrIV:4469895-4469975 ( 21) CACCCACA 1 chrII:13460848-13460928 ( 3) CACCCACA 1 chrV:9790000-9790080 ( 35) CACCCACA 1 chrV:14055212-14055292 ( 68) CGCAGACA 1 chrX:16961556-16961636 ( 60) CGCAGACA 1 chrII:10851275-10851355 ( 23) CGCAGACA 1 chrV:13658783-13658863 ( 13) CACACACG 1 chrV:7728315-7728395 ( 32) CACACCCA 1 chrIV:6097248-6097328 ( 25) CTCACACA 1 chrI:7872328-7872408 ( 12) CTCACACA 1 chrX:1909503-1909583 ( 70) CGCCCACA 1 chrI:9381780-9381860 ( 63) CACACTCA 1 chrIII:8443767-8443847 ( 2) CACAGCCA 1 chrIII:1420047-1420127 ( 73) CACAGCCA 1 chrX:15668229-15668309 ( 15) CACACACT 1 chrX:16930921-16931001 ( 9) CACCCACG 1 chrII:5181670-5181750 ( 24) CGCCGACA 1 chrII:9603586-9603666 ( 67) CGCAGACG 1 chrX:16796959-16797039 ( 30) CGCAGACG 1 chrIII:5940892-5940972 ( 70) CGCACTCA 1 chrV:14200271-14200351 ( 4) CGCACACT 1 chrX:6254340-6254420 ( 21) CACACATA 1 chrIII:1785950-1786030 ( 27) CGCACACT 1 chrIII:13720544-13720624 ( 19) CACACATA 1 chrIII:9052663-9052743 ( 70) CACACCCG 1 chrIII:11090195-11090275 ( 53) CACCGACG 1 chrV:6326609-6326689 ( 59) GACACACA 1 chrII:10555627-10555707 ( 18) CTCCGACA 1 chrIII:1923633-1923713 ( 65) CTCACTCA 1 chrI:12551218-12551298 ( 23) CTCAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 3.4e-002 -1214 210 -334 -1214 128 -1214 12 -134 -1214 214 -1214 -1214 163 -36 -1214 -1214 -1214 164 36 -1214 163 -103 -1214 -208 -1214 207 -1214 -266 159 -1214 -75 -208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 3.4e-002 0.000000 0.977778 0.022222 0.000000 0.644444 0.000000 0.244444 0.111111 0.000000 1.000000 0.000000 0.000000 0.822222 0.177778 0.000000 0.000000 0.000000 0.711111 0.288889 0.000000 0.822222 0.111111 0.000000 0.066667 0.000000 0.955556 0.000000 0.044444 0.800000 0.000000 0.133333 0.066667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 regular expression -------------------------------------------------------------------------------- C[AG]CA[CG]ACA -------------------------------------------------------------------------------- Time 19.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-5 width = 8 sites = 14 llr = 141 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C :::::::: probability G :a:a19:a matrix T a:9:91a: bits 2.2 * * * 1.9 * * * 1.7 ** * ** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4606477-4606557 46 1.60e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chrX:16961556-16961636 19 1.60e-05 tgtgtaagtg tgtgtgtg tgtgtgCGAT chrI:1251564-1251644 10 1.60e-05 TTCAATAtg tgtgtgtg tgtgtgtgtg chrX:14229553-14229633 53 1.60e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chrIV:16491703-16491783 38 1.60e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chrIV:2993456-2993536 46 1.60e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtA chrIII:6133576-6133656 57 1.60e-05 cgtgtgtgta tgtgtgtg GAGAAGCATA chrII:4130422-4130502 9 1.60e-05 tgtgtgtg tgtgtgtg tgtgtgtgtg chrI:3567627-3567707 52 1.60e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chrV:11638783-11638863 60 1.60e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chrIV:5591279-5591359 16 3.59e-05 TTTTTTGTGT TGTGTTTG CCTCTCTGTT chrII:14600041-14600121 1 3.59e-05 . tgtgtttg ATGATTGGAA chrX:6750281-6750361 2 4.87e-05 G TGTGGGTG CGTCCGTCCG chrIII:8161193-8161273 36 6.39e-05 TGCAACTAAA TGAGTGTG ATCATCGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4606477-4606557 1.6e-05 45_[+5]_27 chrX:16961556-16961636 1.6e-05 18_[+5]_54 chrI:1251564-1251644 1.6e-05 9_[+5]_63 chrX:14229553-14229633 1.6e-05 52_[+5]_20 chrIV:16491703-16491783 1.6e-05 37_[+5]_35 chrIV:2993456-2993536 1.6e-05 45_[+5]_27 chrIII:6133576-6133656 1.6e-05 56_[+5]_16 chrII:4130422-4130502 1.6e-05 8_[+5]_64 chrI:3567627-3567707 1.6e-05 51_[+5]_21 chrV:11638783-11638863 1.6e-05 59_[+5]_13 chrIV:5591279-5591359 3.6e-05 15_[+5]_57 chrII:14600041-14600121 3.6e-05 [+5]_72 chrX:6750281-6750361 4.9e-05 1_[+5]_71 chrIII:8161193-8161273 6.4e-05 35_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=14 chrX:4606477-4606557 ( 46) TGTGTGTG 1 chrX:16961556-16961636 ( 19) TGTGTGTG 1 chrI:1251564-1251644 ( 10) TGTGTGTG 1 chrX:14229553-14229633 ( 53) TGTGTGTG 1 chrIV:16491703-16491783 ( 38) TGTGTGTG 1 chrIV:2993456-2993536 ( 46) TGTGTGTG 1 chrIII:6133576-6133656 ( 57) TGTGTGTG 1 chrII:4130422-4130502 ( 9) TGTGTGTG 1 chrI:3567627-3567707 ( 52) TGTGTGTG 1 chrV:11638783-11638863 ( 60) TGTGTGTG 1 chrIV:5591279-5591359 ( 16) TGTGTTTG 1 chrII:14600041-14600121 ( 1) TGTGTTTG 1 chrX:6750281-6750361 ( 2) TGTGGGTG 1 chrIII:8161193-8161273 ( 36) TGAGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 1.2e+000 -1045 -1045 -1045 183 -1045 -1045 215 -1045 -190 -1045 -1045 172 -1045 -1045 215 -1045 -1045 -1045 -165 172 -1045 -1045 193 -98 -1045 -1045 -1045 183 -1045 -1045 215 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.2e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.071429 0.000000 0.000000 0.928571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.071429 0.928571 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-5 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 22.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11638783-11638863 4.26e-04 8_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_8 chrI:1225396-1225476 1.13e-01 80 chrI:3567627-3567707 5.20e-04 26_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_6 chrX:5106272-5106352 5.99e-01 80 chrV:6226580-6226660 2.04e-01 80 chrV:6278469-6278549 2.66e-01 80 chrI:10462707-10462787 9.02e-01 80 chrV:20873316-20873396 3.69e-02 30_[+4(1.33e-05)]_[+4(1.33e-05)]_\ [+4(1.33e-05)]_[+4(1.33e-05)]_[+4(1.33e-05)]_[+4(7.14e-05)]_2 chrV:13567210-13567290 6.74e-04 52_[+1(5.11e-05)]_20 chrIII:12658878-12658958 8.70e-01 80 chrII:2378654-2378734 2.15e-02 22_[+3(2.37e-05)]_50 chrII:4130422-4130502 1.78e-06 1_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_8_[+4(3.77e-05)]_23 chrX:15668229-15668309 1.75e-01 80 chrIII:6133576-6133656 2.59e-05 1_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_6_[+1(1.60e-05)]_1_\ [+5(1.60e-05)]_16 chrX:4147813-4147893 4.52e-01 80 chrX:642718-642798 4.56e-01 80 chrI:297472-297552 8.61e-01 80 chrV:20164548-20164628 5.12e-01 80 chrV:6326609-6326689 7.91e-02 80 chrIII:11921785-11921865 3.77e-01 80 chrIII:4626360-4626440 3.56e-02 1_[+4(1.33e-05)]_[+4(1.33e-05)]_\ [+4(1.33e-05)]_[+4(1.33e-05)]_47 chrIV:2993456-2993536 5.56e-05 34_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_22 chrX:1503817-1503897 9.20e-01 80 chrIII:445587-445667 2.11e-04 64_[+1(1.60e-05)]_[+1(1.60e-05)] chrIII:13546689-13546769 1.64e-01 80 chrV:4823896-4823976 1.46e-01 54_[+2(3.89e-05)]_18 chrV:13908807-13908887 9.76e-01 80 chrIII:3699376-3699456 1.28e-01 80 chrIII:5230677-5230757 7.87e-01 80 chrI:7059645-7059725 9.60e-01 80 chrII:5339961-5340041 6.31e-01 80 chrX:3567020-3567100 9.50e-02 80 chrI:7656745-7656825 3.04e-01 80 chrIII:9783290-9783370 6.04e-01 80 chrV:14354515-14354595 6.59e-01 80 chrIII:7733335-7733415 1.20e-01 38_[+2(7.56e-05)]_34 chrX:4969380-4969460 3.08e-02 [+2(6.27e-05)]_72 chrIII:1951725-1951805 1.80e-01 80 chrIII:10214628-10214708 1.49e-01 17_[+2(9.58e-05)]_55 chrIII:6462762-6462842 9.70e-01 80 chrII:8747484-8747564 2.84e-01 80 chrX:17030675-17030755 7.76e-02 26_[+4(1.33e-05)]_[+4(1.33e-05)]_\ [+4(1.33e-05)]_[+4(1.33e-05)]_[+4(1.33e-05)]_14 chrIII:9052663-9052743 1.56e-01 80 chrV:12320446-12320526 6.05e-01 80 chrIII:8161193-8161273 3.75e-02 35_[+5(6.39e-05)]_37 chrII:14600041-14600121 1.74e-03 [+5(3.59e-05)]_58_[+1(3.59e-05)]_6 chrII:10555627-10555707 2.58e-02 80 chrIII:11689481-11689561 4.35e-04 7_[+1(9.10e-05)]_65 chrX:6254051-6254131 7.48e-01 80 chrI:4769661-4769741 9.84e-02 80 chrIII:13720544-13720624 2.84e-01 80 chrI:299815-299895 7.78e-03 54_[+4(1.33e-05)]_18 chrIII:12568313-12568393 1.75e-02 1_[+4(1.33e-05)]_[+4(1.33e-05)]_\ [+4(1.33e-05)]_55 chrV:13658783-13658863 8.49e-02 12_[+4(7.14e-05)]_60 chrI:12551218-12551298 1.92e-04 5_[+3(1.31e-05)]_67 chrIII:13464651-13464731 3.84e-01 80 chrI:638311-638391 9.96e-01 80 chrIII:5506246-5506326 9.75e-01 80 chrX:15629784-15629864 2.67e-02 [+4(1.33e-05)]_[+4(1.33e-05)]_\ [+4(1.33e-05)]_[+4(1.33e-05)]_[+4(1.33e-05)]_40 chrX:4606713-4606793 8.27e-01 80 chrI:1701313-1701393 9.38e-01 80 chrIII:1420047-1420127 2.25e-02 80 chrV:5272916-5272996 9.04e-02 80 chrX:8017308-8017388 4.37e-01 80 chrII:10547485-10547565 9.01e-01 80 chrIV:2711121-2711201 6.68e-01 80 chrX:11603444-11603524 8.87e-01 80 chrII:8747705-8747785 9.94e-01 80 chrIII:2172045-2172125 1.43e-07 47_[+1(1.60e-05)]_25 chrX:12872419-12872499 4.26e-02 67_[+2(9.58e-05)]_5 chrII:6891287-6891367 3.35e-01 80 chrI:7872328-7872408 2.10e-02 11_[+4(9.68e-05)]_61 chrII:11756921-11757001 7.10e-01 80 chrV:13907730-13907810 4.07e-01 80 chrV:8936295-8936375 3.42e-01 80 chrIV:2709665-2709745 9.99e-01 80 chrX:2368664-2368744 1.58e-01 1_[+4(1.33e-05)]_71 chrV:13090560-13090640 9.92e-01 80 chrV:726068-726148 8.89e-01 80 chrIV:11956475-11956555 1.73e-02 80 chrIII:12607497-12607577 4.90e-01 80 chrII:13198222-13198302 3.63e-01 80 chrX:8019826-8019906 6.51e-02 80 chrIII:12549867-12549947 1.17e-01 1_[+2(1.28e-05)]_53_[+2(1.28e-05)]_\ 10 chrIV:5591279-5591359 3.11e-03 15_[+5(3.59e-05)]_38_[+1(3.59e-05)]_\ 11 chrIV:16170793-16170873 2.83e-02 22_[+1(5.11e-05)]_50 chrX:7989455-7989535 4.08e-01 80 chrIV:11147106-11147186 8.21e-01 80 chrI:4911641-4911721 1.30e-01 80 chrIII:8864215-8864295 9.52e-01 80 chrIV:15931971-15932051 8.02e-02 80 chrV:20729022-20729102 1.92e-01 80 chrIV:11149119-11149199 2.33e-01 80 chrX:14476863-14476943 5.43e-01 80 chrV:16593077-16593157 9.57e-01 80 chrI:7079361-7079441 2.71e-01 80 chrII:2861402-2861482 5.85e-02 38_[+1(7.10e-05)]_34 chrIII:5950027-5950107 3.90e-01 80 chrII:10851275-10851355 7.10e-02 22_[+4(7.14e-05)]_50 chrI:296086-296166 6.59e-01 80 chrI:2671694-2671774 9.64e-01 80 chrX:4193390-4193470 9.56e-01 80 chrIV:16491703-16491783 1.98e-05 20_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_[+1(1.60e-05)]_28 chrII:6346815-6346895 7.19e-01 80 chrII:7757002-7757082 9.15e-01 80 chrIII:11830720-11830800 8.09e-01 80 chrIII:8797366-8797446 4.42e-01 80 chrIV:17281321-17281401 7.11e-01 80 chrX:14229553-14229633 5.20e-04 1_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_[+1(1.60e-05)]_7 chrX:3092723-3092803 1.75e-01 80 chrII:4922641-4922721 9.15e-01 80 chrV:15590275-15590355 9.97e-01 80 chrII:6347820-6347900 7.05e-01 80 chrV:1261847-1261927 8.31e-01 80 chrIV:3384775-3384855 1.01e-02 65_[+2(1.28e-05)]_7 chrIV:14594265-14594345 8.52e-01 80 chrIII:9805093-9805173 6.25e-01 80 chrI:1251564-1251644 1.61e-06 8_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_22_[+4(1.33e-05)]_[+4(1.33e-05)]_10 chrII:12798937-12799017 5.70e-01 80 chrX:15275502-15275582 9.03e-04 1_[+4(1.33e-05)]_[+4(1.33e-05)]_\ [+4(1.33e-05)]_[+4(1.33e-05)]_[+4(1.33e-05)]_12_[+2(1.28e-05)]_19 chrIV:4026090-4026170 1.56e-02 15_[+2(6.27e-05)]_57 chrX:1909503-1909583 2.76e-02 80 chrIII:1616606-1616686 1.96e-01 80 chrX:16796959-16797039 6.53e-02 80 chrIII:1785950-1786030 8.03e-03 43_[+3(3.67e-05)]_29 chrX:6750281-6750361 2.43e-08 1_[+5(4.87e-05)]_8_[+4(3.77e-05)]_\ 29_[+1(1.60e-05)]_18 chrV:8247793-8247873 6.68e-01 80 chrIII:8686016-8686096 7.63e-01 80 chrIII:8443767-8443847 1.73e-01 80 chrII:7529260-7529340 5.08e-03 13_[+3(1.31e-05)]_59 chrX:11644067-11644147 1.26e-01 [+4(1.33e-05)]_[+4(1.33e-05)]_\ [+4(1.33e-05)]_[+4(1.33e-05)]_[+4(1.33e-05)]_[+4(1.33e-05)]_[+4(1.33e-05)]_\ 24 chrIII:1926586-1926666 1.35e-01 1_[+3(1.31e-05)]_71 chrI:6727893-6727973 9.19e-01 80 chrI:6835587-6835667 6.80e-01 80 chrII:8016883-8016963 1.41e-01 80 chrI:2878559-2878639 8.24e-01 80 chrI:2586150-2586230 7.14e-01 80 chrX:1389591-1389671 9.94e-01 80 chrI:1050965-1051045 5.20e-01 80 chrII:9603586-9603666 1.29e-02 80 chrI:1070050-1070130 9.35e-02 35_[+2(1.28e-05)]_[+2(1.28e-05)]_\ [+2(1.28e-05)]_[+2(1.28e-05)]_13 chrV:11573019-11573099 3.59e-01 80 chrX:6254340-6254420 8.74e-02 80 chrIV:13318951-13319031 3.06e-01 80 chrI:6838159-6838239 9.67e-02 80 chrX:17505922-17506002 3.88e-01 80 chrIV:8527808-8527888 5.48e-02 80 chrV:4190307-4190387 9.52e-01 80 chrV:14850773-14850853 2.13e-01 80 chrV:9318281-9318361 8.19e-01 80 chrI:7872533-7872613 5.79e-01 80 chrII:10549250-10549330 9.86e-01 80 chrV:7432879-7432959 4.57e-01 80 chrI:9381780-9381860 5.10e-01 80 chrX:13105090-13105170 5.11e-01 80 chrX:7181794-7181874 3.23e-01 80 chrV:19430682-19430762 9.50e-01 80 chrI:315195-315275 5.92e-02 32_[+3(2.37e-05)]_40 chrIII:7977572-7977652 2.41e-01 80 chrIII:11066887-11066967 5.07e-01 80 chrII:13780861-13780941 3.62e-01 80 chrV:9790000-9790080 5.94e-02 34_[+4(4.91e-05)]_38 chrIII:13694122-13694202 5.71e-02 80 chrII:3439420-3439500 4.05e-01 80 chrIV:866949-867029 9.95e-01 80 chrV:10715945-10716025 9.64e-01 80 chrII:8020806-8020886 9.26e-01 80 chrII:10016192-10016272 6.88e-01 80 chrI:7057011-7057091 7.09e-01 80 chrV:9786755-9786835 9.99e-01 80 chrIV:4727996-4728076 4.64e-01 80 chrI:7021380-7021460 3.50e-01 80 chrI:12736788-12736868 8.65e-02 30_[+2(1.28e-05)]_[+2(1.28e-05)]_8_\ [+2(6.27e-05)]_18 chrX:15607631-15607711 9.81e-01 80 chrII:8790008-8790088 5.44e-01 80 chrIII:6421203-6421283 2.20e-03 18_[+3(1.31e-05)]_54 chrIV:295844-295924 4.54e-01 80 chrIV:6097248-6097328 5.85e-06 24_[+4(9.68e-05)]_20_[+2(3.89e-05)]_\ 20 chrII:5181670-5181750 3.86e-02 56_[+2(7.56e-05)]_16 chrIV:4468394-4468474 6.91e-01 80 chrIV:7984061-7984141 8.42e-01 80 chrII:13460848-13460928 1.80e-01 2_[+4(4.91e-05)]_70 chrV:12510130-12510210 7.27e-01 80 chrIV:2602145-2602225 2.81e-03 1_[+3(1.31e-05)]_21_[+3(1.31e-05)]_\ 42 chrIII:10534282-10534362 5.53e-01 80 chrX:6522844-6522924 4.79e-01 80 chrV:14200271-14200351 9.04e-02 80 chrIII:7338678-7338758 9.82e-01 80 chrV:727728-727808 1.53e-01 80 chrX:16961556-16961636 5.37e-07 5_[+1(1.60e-05)]_2_[+1(1.60e-05)]_\ [+1(1.60e-05)]_28_[+4(7.14e-05)]_13 chrIII:7335317-7335397 3.30e-01 80 chrV:10961646-10961726 3.43e-01 80 chrIV:11822020-11822100 5.00e-02 46_[+2(4.98e-05)]_26 chrIV:6336819-6336899 7.27e-01 80 chrIII:1625887-1625967 9.51e-01 80 chrIV:10252480-10252560 8.93e-01 80 chrIII:835967-836047 6.37e-02 80 chrX:4532241-4532321 1.38e-01 35_[+4(1.33e-05)]_37 chrV:11177087-11177167 6.59e-01 80 chrX:12500883-12500963 2.60e-03 18_[+2(7.56e-05)]_26_[+3(9.38e-05)]_\ 20 chrIV:13395465-13395545 4.55e-02 80 chrIII:11090195-11090275 3.14e-01 80 chrII:2974019-2974099 2.16e-02 61_[+2(4.98e-05)]_11 chrII:6842855-6842935 5.43e-01 80 chrIII:5940892-5940972 5.28e-01 80 chrX:16931485-16931565 8.26e-01 80 chrIII:9054029-9054109 7.05e-01 80 chrI:1873938-1874018 3.62e-01 80 chrV:19529326-19529406 5.51e-01 80 chrX:2364868-2364948 9.33e-01 80 chrII:11759438-11759518 8.55e-02 25_[+2(3.89e-05)]_47 chrX:17544529-17544609 2.54e-01 80 chrIII:1923633-1923713 1.01e-01 80 chrX:6252389-6252469 9.94e-01 80 chrI:12995795-12995875 6.11e-01 80 chrI:3822810-3822890 2.29e-01 80 chrIII:5943911-5943991 5.73e-01 80 chrII:12102564-12102644 4.51e-01 80 chrIV:12032524-12032604 1.22e-01 80 chrX:4606477-4606557 6.68e-05 32_[+1(1.60e-05)]_[+1(1.60e-05)]_\ [+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)]_[+1(1.60e-05)] chrV:11532262-11532342 1.68e-02 80 chrI:5379950-5380030 6.97e-01 80 chrV:14849716-14849796 7.92e-01 80 chrIV:4469895-4469975 6.24e-04 20_[+4(4.91e-05)]_33_[+3(1.31e-05)]_\ 11 chrV:14055212-14055292 3.42e-03 8_[+3(4.71e-05)]_51_[+4(7.14e-05)]_\ 5 chrV:7728315-7728395 2.90e-01 31_[+4(9.68e-05)]_41 chrX:15354067-15354147 1.85e-03 16_[+4(3.77e-05)]_14_[+2(1.28e-05)]_\ 2_[+2(1.28e-05)]_24 chrX:15200856-15200936 9.99e-01 80 chrX:6255801-6255881 3.91e-03 15_[+2(2.37e-05)]_57 chrX:12890006-12890086 6.79e-02 80 chrIV:2219603-2219683 6.83e-02 17_[+3(1.31e-05)]_55 chrII:8441705-8441785 6.08e-01 80 chrIII:11792735-11792815 1.12e-01 80 chrX:15568424-15568504 4.45e-04 43_[+1(1.60e-05)]_29 chrIII:3456373-3456453 5.53e-01 80 chrIII:8904205-8904285 5.83e-01 80 chrV:11764506-11764586 7.35e-01 80 chrV:6100783-6100863 7.73e-02 80 chrII:14018245-14018325 8.47e-01 80 chrX:16930921-16931001 9.05e-02 80 chrII:18971-19051 1.06e-02 80 chrX:4962383-4962463 9.83e-02 40_[+4(1.33e-05)]_[+4(1.33e-05)]_\ [+4(1.33e-05)]_[+4(1.33e-05)]_8 chrI:12654639-12654719 2.08e-04 21_[+1(1.60e-05)]_51 chrI:16999-17079 7.18e-04 4_[+3(1.31e-05)]_19_[+2(4.98e-05)]_\ 41 chrIII:836166-836246 4.79e-01 80 chrIV:8795279-8795359 7.02e-01 80 chrV:18967792-18967872 6.89e-03 59_[+3(1.31e-05)]_13 chrII:12678227-12678307 9.96e-01 80 chrV:12968172-12968252 7.07e-01 80 chrX:2553574-2553654 2.57e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************