******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-26.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:10216900-10216980 1.0000 80 chrII:10707872-10707952 1.0000 80 chrII:13751219-13751299 1.0000 80 chrV:11616536-11616616 1.0000 80 chrV:5836218-5836298 1.0000 80 chrII:3036465-3036545 1.0000 80 chrIV:9564147-9564227 1.0000 80 chrV:5836417-5836497 1.0000 80 chrIV:1459277-1459357 1.0000 80 chrIV:10217101-10217181 1.0000 80 chrIII:13556233-13556313 1.0000 80 chrIV:9563877-9563957 1.0000 80 chrV:11094893-11094973 1.0000 80 chrII:8820711-8820791 1.0000 80 chrII:12054763-12054843 1.0000 80 chrV:5410811-5410891 1.0000 80 chrII:8259827-8259907 1.0000 80 chrX:422274-422354 1.0000 80 chrV:4192827-4192907 1.0000 80 chrX:15076248-15076328 1.0000 80 chrV:11616759-11616839 1.0000 80 chrIV:2772454-2772534 1.0000 80 chrIII:12843013-12843093 1.0000 80 chrX:15796742-15796822 1.0000 80 chrIV:3382509-3382589 1.0000 80 chrIII:13550159-13550239 1.0000 80 chrV:4189807-4189887 1.0000 80 chrIV:2765180-2765260 1.0000 80 chrIV:4480414-4480494 1.0000 80 chrII:6562250-6562330 1.0000 80 chrII:12053027-12053107 1.0000 80 chrII:10450558-10450638 1.0000 80 chrV:18573420-18573500 1.0000 80 chrX:13469519-13469599 1.0000 80 chrV:6326537-6326617 1.0000 80 chrX:13544847-13544927 1.0000 80 chrX:17421037-17421117 1.0000 80 chrIV:13077861-13077941 1.0000 80 chrII:10391913-10391993 1.0000 80 chrX:9528097-9528177 1.0000 80 chrI:6498314-6498394 1.0000 80 chrI:12055293-12055373 1.0000 80 chrX:7990452-7990532 1.0000 80 chrIV:15398732-15398812 1.0000 80 chrV:18639923-18640003 1.0000 80 chrX:12105494-12105574 1.0000 80 chrV:6652298-6652378 1.0000 80 chrX:5630110-5630190 1.0000 80 chrII:11841874-11841954 1.0000 80 chrV:12302364-12302444 1.0000 80 chrV:10887592-10887672 1.0000 80 chrX:5122488-5122568 1.0000 80 chrIV:16168095-16168175 1.0000 80 chrX:1478115-1478195 1.0000 80 chrIV:9376654-9376734 1.0000 80 chrV:8939954-8940034 1.0000 80 chrIII:7305160-7305240 1.0000 80 chrIII:6418591-6418671 1.0000 80 chrV:18638597-18638677 1.0000 80 chrIII:10537701-10537781 1.0000 80 chrIII:3377903-3377983 1.0000 80 chrV:12553321-12553401 1.0000 80 chrX:9147119-9147199 1.0000 80 chrIV:9518822-9518902 1.0000 80 chrI:12571122-12571202 1.0000 80 chrX:2893235-2893315 1.0000 80 chrII:12050778-12050858 1.0000 80 chrIII:8782918-8782998 1.0000 80 chrII:7790830-7790910 1.0000 80 chrIII:6509768-6509848 1.0000 80 chrI:7869001-7869081 1.0000 80 chrIV:1459482-1459562 1.0000 80 chrIII:9783591-9783671 1.0000 80 chrV:13202306-13202386 1.0000 80 chrIII:12839113-12839193 1.0000 80 chrX:13108867-13108947 1.0000 80 chrI:2869585-2869665 1.0000 80 chrX:7989337-7989417 1.0000 80 chrV:19519623-19519703 1.0000 80 chrV:5587241-5587321 1.0000 80 chrIV:11718761-11718841 1.0000 80 chrII:1315423-1315503 1.0000 80 chrIV:309654-309734 1.0000 80 chrV:16213498-16213578 1.0000 80 chrIV:17474193-17474273 1.0000 80 chrII:5283118-5283198 1.0000 80 chrV:7413513-7413593 1.0000 80 chrIV:1871144-1871224 1.0000 80 chrII:4748486-4748566 1.0000 80 chrII:10553588-10553668 1.0000 80 chrV:11147872-11147952 1.0000 80 chrII:15212559-15212639 1.0000 80 chrV:9734255-9734335 1.0000 80 chrII:11642193-11642273 1.0000 80 chrII:10019869-10019949 1.0000 80 chrIV:15673159-15673239 1.0000 80 chrX:502854-502934 1.0000 80 chrIII:6145422-6145502 1.0000 80 chrII:10547487-10547567 1.0000 80 chrIII:10339468-10339548 1.0000 80 chrIV:11491540-11491620 1.0000 80 chrI:2077005-2077085 1.0000 80 chrIII:10534349-10534429 1.0000 80 chrV:11119469-11119549 1.0000 80 chrV:14660735-14660815 1.0000 80 chrII:4745427-4745507 1.0000 80 chrIV:4294699-4294779 1.0000 80 chrX:7242337-7242417 1.0000 80 chrII:11836782-11836862 1.0000 80 chrIV:13392388-13392468 1.0000 80 chrX:17138281-17138361 1.0000 80 chrX:864367-864447 1.0000 80 chrV:6238578-6238658 1.0000 80 chrII:8817300-8817380 1.0000 80 chrX:16775506-16775586 1.0000 80 chrX:6232296-6232376 1.0000 80 chrIII:3806453-3806533 1.0000 80 chrIII:7488453-7488533 1.0000 80 chrV:11859234-11859314 1.0000 80 chrX:1492331-1492411 1.0000 80 chrV:9516434-9516514 1.0000 80 chrX:14437980-14438060 1.0000 80 chrX:12761519-12761599 1.0000 80 chrIV:3373603-3373683 1.0000 80 chrX:14477573-14477653 1.0000 80 chrV:5224905-5224985 1.0000 80 chrII:4600317-4600397 1.0000 80 chrX:422505-422585 1.0000 80 chrV:7434249-7434329 1.0000 80 chrIV:4473839-4473919 1.0000 80 chrX:15706262-15706342 1.0000 80 chrX:5078252-5078332 1.0000 80 chrX:11190572-11190652 1.0000 80 chrV:11802620-11802700 1.0000 80 chrII:15205431-15205511 1.0000 80 chrV:15564092-15564172 1.0000 80 chrIII:8739289-8739369 1.0000 80 chrV:11803633-11803713 1.0000 80 chrX:8018567-8018647 1.0000 80 chrIII:10241499-10241579 1.0000 80 chrV:19520396-19520476 1.0000 80 chrX:12663566-12663646 1.0000 80 chrX:15079561-15079641 1.0000 80 chrII:4874610-4874690 1.0000 80 chrIII:10245472-10245552 1.0000 80 chrIV:12427832-12427912 1.0000 80 chrX:8676250-8676330 1.0000 80 chrII:10705566-10705646 1.0000 80 chrV:13201071-13201151 1.0000 80 chrIV:10250806-10250886 1.0000 80 chrX:11198678-11198758 1.0000 80 chrII:12994156-12994236 1.0000 80 chrII:13150064-13150144 1.0000 80 chrX:12425541-12425621 1.0000 80 chrII:5695716-5695796 1.0000 80 chrX:11968410-11968490 1.0000 80 chrV:9088925-9089005 1.0000 80 chrX:1026833-1026913 1.0000 80 chrII:5605572-5605652 1.0000 80 chrII:12042672-12042752 1.0000 80 chrV:11535619-11535699 1.0000 80 chrIV:1722840-1722920 1.0000 80 chrII:5892866-5892946 1.0000 80 chrX:3092615-3092695 1.0000 80 chrV:7415977-7416057 1.0000 80 chrV:14448851-14448931 1.0000 80 chrIV:11021705-11021785 1.0000 80 chrX:343922-344002 1.0000 80 chrV:5823157-5823237 1.0000 80 chrIV:2314314-2314394 1.0000 80 chrII:13678706-13678786 1.0000 80 chrIV:1723203-1723283 1.0000 80 chrV:4653184-4653264 1.0000 80 chrV:5685354-5685434 1.0000 80 chrIV:13082361-13082441 1.0000 80 chrIV:9868119-9868199 1.0000 80 chrIV:5764449-5764529 1.0000 80 chrI:7857596-7857676 1.0000 80 chrII:15203707-15203787 1.0000 80 chrI:8344570-8344650 1.0000 80 chrII:13954264-13954344 1.0000 80 chrX:14508077-14508157 1.0000 80 chrIII:11738713-11738793 1.0000 80 chrI:10104318-10104398 1.0000 80 chrX:2215277-2215357 1.0000 80 chrIV:3652435-3652515 1.0000 80 chrIV:8028441-8028521 1.0000 80 chrV:5715100-5715180 1.0000 80 chrV:4730248-4730328 1.0000 80 chrIV:11913299-11913379 1.0000 80 chrV:12063195-12063275 1.0000 80 chrX:2070843-2070923 1.0000 80 chrIV:2710677-2710757 1.0000 80 chrX:13470800-13470880 1.0000 80 chrV:727711-727791 1.0000 80 chrII:14408073-14408153 1.0000 80 chrIV:10976059-10976139 1.0000 80 chrV:4186532-4186612 1.0000 80 chrV:5502748-5502828 1.0000 80 chrI:7008836-7008916 1.0000 80 chrIV:4641085-4641165 1.0000 80 chrII:8015508-8015588 1.0000 80 chrX:4148606-4148686 1.0000 80 chrII:12060048-12060128 1.0000 80 chrII:1142185-1142265 1.0000 80 chrX:5135778-5135858 1.0000 80 chrII:12058523-12058603 1.0000 80 chrII:13674069-13674149 1.0000 80 chrIV:3647684-3647764 1.0000 80 chrV:11799442-11799522 1.0000 80 chrX:2590889-2590969 1.0000 80 chrIII:4096496-4096576 1.0000 80 chrIV:11901391-11901471 1.0000 80 chrV:10473153-10473233 1.0000 80 chrI:1699722-1699802 1.0000 80 chrV:10953871-10953951 1.0000 80 chrV:15661179-15661259 1.0000 80 chrV:10954078-10954158 1.0000 80 chrX:8674673-8674753 1.0000 80 chrIII:5920202-5920282 1.0000 80 chrV:20690034-20690114 1.0000 80 chrX:17063969-17064049 1.0000 80 chrI:7268380-7268460 1.0000 80 chrIII:65596-65676 1.0000 80 chrIV:4408864-4408944 1.0000 80 chrV:11888103-11888183 1.0000 80 chrII:8020816-8020896 1.0000 80 chrX:3540973-3541053 1.0000 80 chrIV:12716127-12716207 1.0000 80 chrIII:11694629-11694709 1.0000 80 chrIII:3902795-3902875 1.0000 80 chrV:9732860-9732940 1.0000 80 chrII:4748742-4748822 1.0000 80 chrIV:4401041-4401121 1.0000 80 chrIV:8302026-8302106 1.0000 80 chrV:1438959-1439039 1.0000 80 chrX:17633324-17633404 1.0000 80 chrV:5780859-5780939 1.0000 80 chrV:13567260-13567340 1.0000 80 chrII:8745225-8745305 1.0000 80 chrIII:12021416-12021496 1.0000 80 chrIV:4468094-4468174 1.0000 80 chrIV:10782139-10782219 1.0000 80 chrI:2945584-2945664 1.0000 80 chrI:1051020-1051100 1.0000 80 chrX:17640984-17641064 1.0000 80 chrX:17421236-17421316 1.0000 80 chrX:13348621-13348701 1.0000 80 chrII:11838503-11838583 1.0000 80 chrV:4823842-4823922 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ztf-26/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-26.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.219 G 0.217 T 0.278 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.219 G 0.217 T 0.278 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CACGTGDN MEME-1 width = 8 sites = 32 llr = 285 E-value = 3.5e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACGTGDN MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a::::33 pos.-specific C a:a::::2 probability G :::a:a43 matrix T ::::a:43 bits 2.2 * ** * 2.0 * ** * 1.8 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.9 bits) 0.9 ****** 0.7 ****** 0.4 ******* 0.2 ******* 0.0 -------- Multilevel CACGTGGT consensus TA sequence AG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGDN MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8739289-8739369 50 8.46e-06 ACTGCAACAG CACGTGGG GAAGAAGTGT chrII:4748486-4748566 63 8.46e-06 CATATTAAAT CACGTGGG TTCTACTGAA chrV:1438959-1439039 52 2.78e-05 ATTGTTAATT CACGTGGT TCTCAAAACC chrI:2077005-2077085 59 2.78e-05 GTCACCTGAT CACGTGGT GAAGGGCAAC chrII:10547487-10547567 59 2.78e-05 TCGATACCAC CACGTGGC GACGTCGCCT chrIV:9518822-9518902 69 2.78e-05 AATGAACTGA CACGTGGC ATGA chrX:5630110-5630190 10 2.78e-05 AATAATAAT CACGTGGT GTCTCCACAG chrI:12055293-12055373 32 2.78e-05 CCCTCTATTA cacgtggt gtcaggctgt chrV:4192827-4192907 68 2.78e-05 CAGGTGAAAA cacgtggt gtcaa chrIV:1459277-1459357 22 2.78e-05 ATCCCGTTCC CACGTGGC GCCGTCGCCA chrX:13348621-13348701 1 4.98e-05 . CACGTGTG ATGATATGCC chrX:17640984-17641064 16 4.98e-05 CGTGTGTCGC CACGTGTG CTTCACGTAT chrV:727711-727791 33 4.98e-05 TTGTTGGCTC CACGTGTG GCAAGGGTGT chrIII:12839113-12839193 21 4.98e-05 GTCCAAGAGA CACGTGTG TGGGAAGAAA chrV:5410811-5410891 54 4.98e-05 AGACAATGAC CACGTGTG GGAAGAGGAC chrV:11094893-11094973 3 4.98e-05 GA CACGTGGA TTCGTCAGGC chrIV:9564147-9564227 26 4.98e-05 CGTGCTGGAC CACGTGGA CCACGTGGAG chrIII:12021416-12021496 14 7.46e-05 TGTTCTTTGC CACGTGTC TTTTGCTGGT chrV:11888103-11888183 42 7.46e-05 ACACAGTTAG CACGTGTT CAAATAGTGC chrIII:5920202-5920282 20 7.46e-05 ACATACGATT CACGTGTT CACACTTTCA chrII:15205431-15205511 64 7.46e-05 GCACGTGCAT CACGTGTC Atctctatt chrIII:10534349-10534429 34 7.46e-05 TCCTCAATGT CACGTGTC CAACTTCCCC chrIV:10782139-10782219 4 8.89e-05 CTG CACGTGTA CCGGCCATGT chrX:1026833-1026913 72 8.89e-05 GTCTTCACTT CACGTGTA A chrX:864367-864447 21 1.00e-04 CTATGTCTGC CACGTGAG ATTCTGGTTT chrIV:12716127-12716207 66 1.26e-04 ACTGTGTTGC CACGTGAC TTGCAAG chrIV:11021705-11021785 59 1.26e-04 TTCCTATTGC CACGTGAT AACATCATTT chrV:11859234-11859314 15 1.26e-04 TTCCATTGAT CACGTGAT ATCCGTTCAC chrV:13567260-13567340 37 1.40e-04 TGAGTCGCCC CACGTGAA ATCCATTGAA chrV:14448851-14448931 7 1.40e-04 GACCAT CACGTGAA CACCACATGT chrII:4745427-4745507 34 1.40e-04 ATGTTGGAAT CACGTGAA GCCCGTGAGA chrX:5122488-5122568 21 1.40e-04 CAGCAAACCT CACGTGAA CGGGGAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGDN MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8739289-8739369 8.5e-06 49_[+1]_23 chrII:4748486-4748566 8.5e-06 62_[+1]_10 chrV:1438959-1439039 2.8e-05 51_[+1]_21 chrI:2077005-2077085 2.8e-05 58_[+1]_14 chrII:10547487-10547567 2.8e-05 58_[+1]_14 chrIV:9518822-9518902 2.8e-05 68_[+1]_4 chrX:5630110-5630190 2.8e-05 9_[+1]_63 chrI:12055293-12055373 2.8e-05 31_[+1]_41 chrV:4192827-4192907 2.8e-05 67_[+1]_5 chrIV:1459277-1459357 2.8e-05 21_[+1]_51 chrX:13348621-13348701 5e-05 [+1]_72 chrX:17640984-17641064 5e-05 15_[+1]_57 chrV:727711-727791 5e-05 32_[+1]_40 chrIII:12839113-12839193 5e-05 20_[+1]_52 chrV:5410811-5410891 5e-05 53_[+1]_19 chrV:11094893-11094973 5e-05 2_[+1]_70 chrIV:9564147-9564227 5e-05 25_[+1]_47 chrIII:12021416-12021496 7.5e-05 13_[+1]_59 chrV:11888103-11888183 7.5e-05 41_[+1]_31 chrIII:5920202-5920282 7.5e-05 19_[+1]_53 chrII:15205431-15205511 7.5e-05 63_[+1]_9 chrIII:10534349-10534429 7.5e-05 33_[+1]_39 chrIV:10782139-10782219 8.9e-05 3_[+1]_69 chrX:1026833-1026913 8.9e-05 71_[+1]_1 chrX:864367-864447 0.0001 20_[+1]_52 chrIV:12716127-12716207 0.00013 65_[+1]_7 chrIV:11021705-11021785 0.00013 58_[+1]_14 chrV:11859234-11859314 0.00013 14_[+1]_58 chrV:13567260-13567340 0.00014 36_[+1]_36 chrV:14448851-14448931 0.00014 6_[+1]_66 chrII:4745427-4745507 0.00014 33_[+1]_39 chrX:5122488-5122568 0.00014 20_[+1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGDN MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACGTGDN width=8 seqs=32 chrIII:8739289-8739369 ( 50) CACGTGGG 1 chrII:4748486-4748566 ( 63) CACGTGGG 1 chrV:1438959-1439039 ( 52) CACGTGGT 1 chrI:2077005-2077085 ( 59) CACGTGGT 1 chrII:10547487-10547567 ( 59) CACGTGGC 1 chrIV:9518822-9518902 ( 69) CACGTGGC 1 chrX:5630110-5630190 ( 10) CACGTGGT 1 chrI:12055293-12055373 ( 32) CACGTGGT 1 chrV:4192827-4192907 ( 68) CACGTGGT 1 chrIV:1459277-1459357 ( 22) CACGTGGC 1 chrX:13348621-13348701 ( 1) CACGTGTG 1 chrX:17640984-17641064 ( 16) CACGTGTG 1 chrV:727711-727791 ( 33) CACGTGTG 1 chrIII:12839113-12839193 ( 21) CACGTGTG 1 chrV:5410811-5410891 ( 54) CACGTGTG 1 chrV:11094893-11094973 ( 3) CACGTGGA 1 chrIV:9564147-9564227 ( 26) CACGTGGA 1 chrIII:12021416-12021496 ( 14) CACGTGTC 1 chrV:11888103-11888183 ( 42) CACGTGTT 1 chrIII:5920202-5920282 ( 20) CACGTGTT 1 chrII:15205431-15205511 ( 64) CACGTGTC 1 chrIII:10534349-10534429 ( 34) CACGTGTC 1 chrIV:10782139-10782219 ( 4) CACGTGTA 1 chrX:1026833-1026913 ( 72) CACGTGTA 1 chrX:864367-864447 ( 21) CACGTGAG 1 chrIV:12716127-12716207 ( 66) CACGTGAC 1 chrIV:11021705-11021785 ( 59) CACGTGAT 1 chrV:11859234-11859314 ( 15) CACGTGAT 1 chrV:13567260-13567340 ( 37) CACGTGAA 1 chrV:14448851-14448931 ( 7) CACGTGAA 1 chrII:4745427-4745507 ( 34) CACGTGAA 1 chrX:5122488-5122568 ( 21) CACGTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGDN MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.89106 E= 3.5e-009 -1164 219 -1164 -1164 181 -1164 -1164 -1164 -1164 219 -1164 -1164 -1164 -1164 221 -1164 -1164 -1164 -1164 184 -1164 -1164 221 -1164 -19 -1164 79 43 -19 0 21 1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGDN MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.5e-009 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.375000 0.375000 0.250000 0.218750 0.250000 0.281250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGDN MEME-1 regular expression -------------------------------------------------------------------------------- CACGTG[GTA][TAGC] -------------------------------------------------------------------------------- Time 4.70 secs. ******************************************************************************** ******************************************************************************** MOTIF STTTTTTT MEME-2 width = 8 sites = 54 llr = 402 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif STTTTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C 4::2::12 probability G 6:::::12 matrix T :7a8aa96 bits 2.2 2.0 1.8 * ** 1.5 * ** Relative 1.3 **** Entropy 1.1 * ***** (10.7 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTTTTTT consensus CA G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTTTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:15203707-15203787 43 2.78e-05 CTGCTGTCTC GTTTTTTT TTTCGAAAAA chrII:5892866-5892946 37 2.78e-05 CCGAGAAACT GTTTTTTT TTAACTATGT chrX:1026833-1026913 5 2.78e-05 CTCC GTTTTTTT TTAACTATAG chrX:11198678-11198758 5 2.78e-05 TTTG GTTTTTTT ACTTCGCGCC chrIII:10241499-10241579 67 2.78e-05 TCTCTACCAA GTTTTTTT TCTCCC chrIII:8739289-8739369 23 2.78e-05 TTTTTCTATC GTTTTTTT AGTATCAAAA chrV:15564092-15564172 7 2.78e-05 CAAATC GTTTTTTT TTCTTCCACC chrIV:11491540-11491620 11 2.78e-05 AAGATACTTG GTTTTTTT CGCTCGGCGC chrIII:13550159-13550239 51 2.78e-05 CCACTTCGGA GTTTTTTT CAGTGGACTT chrII:13751219-13751299 40 2.78e-05 ATAGCGAGGC GTTTTTTT AAAAATTACT chrX:8676250-8676330 48 5.59e-05 TTTTTCATTT CTTTTTTT ACAATCCATC chrV:11803633-11803713 64 5.59e-05 TCCATTATCG CTTTTTTT CAAAAAAAA chrII:1315423-1315503 37 5.59e-05 GCGTTATTAT CTTTTTTT TTTGTCTTCT chrIII:7305160-7305240 73 5.59e-05 TTTTTGTCAG CTTTTTTT chrIV:9376654-9376734 8 5.59e-05 TGAGACT CTTTTTTT GGTTTTGGTA chrV:12302364-12302444 70 5.59e-05 TATCACTTAT CTTTTTTT GTT chrIII:13556233-13556313 3 5.59e-05 CA CTTTTTTT GGGTAACAAA chrV:4823842-4823922 65 7.77e-05 AACCAGTGAC GTTTTTTG ATAAAAAT chrIII:3902795-3902875 39 7.77e-05 AAGAGAAAAA GTTTTTTG GGGAGCGCAG chrV:6238578-6238658 26 9.96e-05 ATATTCTCAT GTTTTTTC TCACATCTAG chrX:864367-864447 35 9.96e-05 TGAGATTCTG GTTTTTTC TTCTTTTGGA chrV:7434249-7434329 14 1.28e-04 GCTTGAACTC GATTTTTT GCTCAAGCAG chrI:2869585-2869665 9 1.50e-04 AATCGAGA CTTTTTTG AGAAAATTAA chrIV:2314314-2314394 60 2.01e-04 AATTTTGGGT CATTTTTT GCCAAATTTG chrII:13150064-13150144 31 2.01e-04 TAACCTGTTT CATTTTTT GCACGTACCT chrV:6652298-6652378 17 2.01e-04 CTTTTTGTAT CATTTTTT CAGTTTTTCA chrX:2070843-2070923 29 2.23e-04 TTCAACAGTT GTTCTTTT CAGTGTAACT chrI:1051020-1051100 4 2.46e-04 CCG GATTTTTG TCGTGATCGC chrII:8020816-8020896 53 2.46e-04 ACACAGAAAA GATTTTTG ACAAATTCAT chrV:16213498-16213578 68 2.46e-04 AGTGGCGGGC GATTTTTG GAAAT chrV:10473153-10473233 20 2.90e-04 TCACTATCTT CTTCTTTT TCTCTTTCCT chrIII:11738713-11738793 25 2.90e-04 ACAGAGGGCG CTTCTTTT AACAGATAGT chrX:14437980-14438060 30 2.90e-04 CTATCTTTTG CTTCTTTT CCATGTTTGC chrIII:9783591-9783671 46 2.90e-04 GGTGAGATGA GATTTTTC TAATAAATTC chrV:11616759-11616839 56 2.90e-04 AAAAATAAAC GATTTTTC ATTGTCTCTA chrV:20690034-20690114 45 3.13e-04 ggcaagtaca catttttg aagtctgcca chrII:5605572-5605652 7 3.13e-04 ATCTTT CATTTTTG AAACGGGAGA chrIV:4408864-4408944 1 3.36e-04 . CATTTTTC AACGGGCAGC chrX:14508077-14508157 18 3.36e-04 CAACCTGATT CATttttc aactttcctc chrX:11968410-11968490 46 3.36e-04 CTGATGCAAC CATTTTTC GGTTCAGCAT chrX:7242337-7242417 27 3.36e-04 TATACACAGT CATTTTTC ATTTTGATGG chrV:18639923-18640003 43 3.36e-04 GACAAAACTG CATTTTTC AAAAAAATTC chrIII:12021416-12021496 5 3.53e-04 GCAT GTTCTTTG CCACGTGTCT chrX:7990452-7990532 56 3.53e-04 GTCGACTTTT GTTCTTTG CACTTCCTCT chrV:14448851-14448931 23 3.70e-04 AACACCACAT GTTCTTTC TTATAAAATC chrIV:3652435-3652515 2 4.15e-04 A GTTTTTCT TTCAGCGCGC chrII:10019869-10019949 1 4.15e-04 . GTTTTTCT TTGACATTCC chrX:9528097-9528177 32 4.15e-04 ATGGTAGACA GTTTTTCT GCAATCGGTG chrV:12063195-12063275 5 4.32e-04 TCGT CTTCTTTG CCGAGCAACG chrIV:309654-309734 42 4.49e-04 GAAAACGTGA CTTCTTTC ATTCTTTGAA chrIV:15673159-15673239 55 5.16e-04 ATTTTTGCGC GTTTTTGT GATGAGAAGA chrII:15212559-15212639 17 5.16e-04 TCTTTTCGTC GTTTTTGT CCCCTTGGGA chrX:502854-502934 47 5.38e-04 AAGTTACTCA CTTTTTGT GGCAGTGTGG chrV:4189807-4189887 15 5.73e-04 CCCGGCAACT GTTTTTCG GTGATACGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTTTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:15203707-15203787 2.8e-05 42_[+2]_30 chrII:5892866-5892946 2.8e-05 36_[+2]_36 chrX:1026833-1026913 2.8e-05 4_[+2]_68 chrX:11198678-11198758 2.8e-05 4_[+2]_68 chrIII:10241499-10241579 2.8e-05 66_[+2]_6 chrIII:8739289-8739369 2.8e-05 22_[+2]_50 chrV:15564092-15564172 2.8e-05 6_[+2]_66 chrIV:11491540-11491620 2.8e-05 10_[+2]_62 chrIII:13550159-13550239 2.8e-05 50_[+2]_22 chrII:13751219-13751299 2.8e-05 39_[+2]_33 chrX:8676250-8676330 5.6e-05 47_[+2]_25 chrV:11803633-11803713 5.6e-05 63_[+2]_9 chrII:1315423-1315503 5.6e-05 36_[+2]_36 chrIII:7305160-7305240 5.6e-05 72_[+2] chrIV:9376654-9376734 5.6e-05 7_[+2]_65 chrV:12302364-12302444 5.6e-05 69_[+2]_3 chrIII:13556233-13556313 5.6e-05 2_[+2]_70 chrV:4823842-4823922 7.8e-05 64_[+2]_8 chrIII:3902795-3902875 7.8e-05 38_[+2]_34 chrV:6238578-6238658 0.0001 25_[+2]_47 chrX:864367-864447 0.0001 34_[+2]_38 chrV:7434249-7434329 0.00013 13_[+2]_59 chrI:2869585-2869665 0.00015 8_[+2]_64 chrIV:2314314-2314394 0.0002 59_[+2]_13 chrII:13150064-13150144 0.0002 30_[+2]_42 chrV:6652298-6652378 0.0002 16_[+2]_56 chrX:2070843-2070923 0.00022 28_[+2]_44 chrI:1051020-1051100 0.00025 3_[+2]_69 chrII:8020816-8020896 0.00025 52_[+2]_20 chrV:16213498-16213578 0.00025 67_[+2]_5 chrV:10473153-10473233 0.00029 19_[+2]_53 chrIII:11738713-11738793 0.00029 24_[+2]_48 chrX:14437980-14438060 0.00029 29_[+2]_43 chrIII:9783591-9783671 0.00029 45_[+2]_27 chrV:11616759-11616839 0.00029 55_[+2]_17 chrV:20690034-20690114 0.00031 44_[+2]_28 chrII:5605572-5605652 0.00031 6_[+2]_66 chrIV:4408864-4408944 0.00034 [+2]_72 chrX:14508077-14508157 0.00034 17_[+2]_55 chrX:11968410-11968490 0.00034 45_[+2]_27 chrX:7242337-7242417 0.00034 26_[+2]_46 chrV:18639923-18640003 0.00034 42_[+2]_30 chrIII:12021416-12021496 0.00035 4_[+2]_68 chrX:7990452-7990532 0.00035 55_[+2]_17 chrV:14448851-14448931 0.00037 22_[+2]_50 chrIV:3652435-3652515 0.00041 1_[+2]_71 chrII:10019869-10019949 0.00041 [+2]_72 chrX:9528097-9528177 0.00041 31_[+2]_41 chrV:12063195-12063275 0.00043 4_[+2]_68 chrIV:309654-309734 0.00045 41_[+2]_31 chrIV:15673159-15673239 0.00052 54_[+2]_18 chrII:15212559-15212639 0.00052 16_[+2]_56 chrX:502854-502934 0.00054 46_[+2]_26 chrV:4189807-4189887 0.00057 14_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTTTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STTTTTTT width=8 seqs=54 chrII:15203707-15203787 ( 43) GTTTTTTT 1 chrII:5892866-5892946 ( 37) GTTTTTTT 1 chrX:1026833-1026913 ( 5) GTTTTTTT 1 chrX:11198678-11198758 ( 5) GTTTTTTT 1 chrIII:10241499-10241579 ( 67) GTTTTTTT 1 chrIII:8739289-8739369 ( 23) GTTTTTTT 1 chrV:15564092-15564172 ( 7) GTTTTTTT 1 chrIV:11491540-11491620 ( 11) GTTTTTTT 1 chrIII:13550159-13550239 ( 51) GTTTTTTT 1 chrII:13751219-13751299 ( 40) GTTTTTTT 1 chrX:8676250-8676330 ( 48) CTTTTTTT 1 chrV:11803633-11803713 ( 64) CTTTTTTT 1 chrII:1315423-1315503 ( 37) CTTTTTTT 1 chrIII:7305160-7305240 ( 73) CTTTTTTT 1 chrIV:9376654-9376734 ( 8) CTTTTTTT 1 chrV:12302364-12302444 ( 70) CTTTTTTT 1 chrIII:13556233-13556313 ( 3) CTTTTTTT 1 chrV:4823842-4823922 ( 65) GTTTTTTG 1 chrIII:3902795-3902875 ( 39) GTTTTTTG 1 chrV:6238578-6238658 ( 26) GTTTTTTC 1 chrX:864367-864447 ( 35) GTTTTTTC 1 chrV:7434249-7434329 ( 14) GATTTTTT 1 chrI:2869585-2869665 ( 9) CTTTTTTG 1 chrIV:2314314-2314394 ( 60) CATTTTTT 1 chrII:13150064-13150144 ( 31) CATTTTTT 1 chrV:6652298-6652378 ( 17) CATTTTTT 1 chrX:2070843-2070923 ( 29) GTTCTTTT 1 chrI:1051020-1051100 ( 4) GATTTTTG 1 chrII:8020816-8020896 ( 53) GATTTTTG 1 chrV:16213498-16213578 ( 68) GATTTTTG 1 chrV:10473153-10473233 ( 20) CTTCTTTT 1 chrIII:11738713-11738793 ( 25) CTTCTTTT 1 chrX:14437980-14438060 ( 30) CTTCTTTT 1 chrIII:9783591-9783671 ( 46) GATTTTTC 1 chrV:11616759-11616839 ( 56) GATTTTTC 1 chrV:20690034-20690114 ( 45) CATTTTTG 1 chrII:5605572-5605652 ( 7) CATTTTTG 1 chrIV:4408864-4408944 ( 1) CATTTTTC 1 chrX:14508077-14508157 ( 18) CATTTTTC 1 chrX:11968410-11968490 ( 46) CATTTTTC 1 chrX:7242337-7242417 ( 27) CATTTTTC 1 chrV:18639923-18640003 ( 43) CATTTTTC 1 chrIII:12021416-12021496 ( 5) GTTCTTTG 1 chrX:7990452-7990532 ( 56) GTTCTTTG 1 chrV:14448851-14448931 ( 23) GTTCTTTC 1 chrIV:3652435-3652515 ( 2) GTTTTTCT 1 chrII:10019869-10019949 ( 1) GTTTTTCT 1 chrX:9528097-9528177 ( 32) GTTTTTCT 1 chrV:12063195-12063275 ( 5) CTTCTTTG 1 chrIV:309654-309734 ( 42) CTTCTTTC 1 chrIV:15673159-15673239 ( 55) GTTTTTGT 1 chrII:15212559-15212639 ( 17) GTTTTTGT 1 chrX:502854-502934 ( 47) CTTTTTGT 1 chrV:4189807-4189887 ( 15) GTTTTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTTTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.59303 E= 1.2e+000 -1240 102 136 -1240 5 -1240 -1240 134 -1240 -1240 -1240 184 -1240 -39 -1240 158 -1240 -1240 -1240 184 -1240 -1240 -1240 184 -1240 -156 -196 164 -1240 -10 4 104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTTTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.2e+000 0.000000 0.444444 0.555556 0.000000 0.296296 0.000000 0.000000 0.703704 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.074074 0.055556 0.870370 0.000000 0.203704 0.222222 0.574074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTTTTTT MEME-2 regular expression -------------------------------------------------------------------------------- [GC][TA]TTTTT[TGC] -------------------------------------------------------------------------------- Time 8.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GCRSGCGC MEME-3 width = 8 sites = 17 llr = 158 E-value = 6.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRSGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::5::::: pos.-specific C :a14:a:8 probability G a:35a:a2 matrix T ::22:::: bits 2.2 ** *** 2.0 ** *** 1.8 ** *** 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ** **** (13.4 bits) 0.9 ** **** 0.7 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel GCAGGCGC consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1723203-1723283 54 6.66e-06 CACAGTCACA GCAGGCGC TTCAGACACT chrIII:10537701-10537781 71 6.66e-06 acgccatgag gcaggcgc ag chrIV:3382509-3382589 67 6.66e-06 AACAACACGC GCAGGCGC AATTTC chrX:2215277-2215357 42 1.84e-05 AGTTCAAATG GCACGCGC CTCTCTCGAC chrIV:3652435-3652515 16 2.35e-05 TTCTTTCAGC GCGCGCGC CCGAAATAAA chrX:7242337-7242417 52 2.35e-05 TGGAACGATG GCGCGCGC AATTCTTTTG chrIV:2765180-2765260 54 2.35e-05 gacgcagaca gcgcgcgc tctcttcgtc chrIV:11491540-11491620 27 3.00e-05 TTCGCTCGGC GCTGGCGC CGCGGTCTCT chrX:7989337-7989417 54 3.00e-05 ATCTCCTTCT GCTGGCGC GTAATCGTAC chrI:12571122-12571202 66 3.00e-05 CAATGAAGTT GCTGGCGC ATTTATC chrIV:8302026-8302106 45 4.51e-05 TTGAAGTCTA GCATGCGC AGTTTGTATT chrIV:4468094-4468174 36 5.16e-05 ACAAATGCAT GCGTGCGC CTTTAAGTCC chrI:2077005-2077085 37 5.16e-05 AGACCCGCGC GCGTGCGC ATAGGTCACC chrX:17633324-17633404 22 5.82e-05 GCACTATTTT GCAGGCGG CTGGAGGGTA chrV:9732860-9732940 5 5.82e-05 TGAA GCAGGCGG TTCTCAACAC chrI:10104318-10104398 23 7.49e-05 TCAGAATCGC GCACGCGG GAGAATAAAA chrX:11198678-11198758 20 9.34e-05 TTTACTTCGC GCCCGCGC CAGTTTACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1723203-1723283 6.7e-06 53_[+3]_19 chrIII:10537701-10537781 6.7e-06 70_[+3]_2 chrIV:3382509-3382589 6.7e-06 66_[+3]_6 chrX:2215277-2215357 1.8e-05 41_[+3]_31 chrIV:3652435-3652515 2.4e-05 15_[+3]_57 chrX:7242337-7242417 2.4e-05 51_[+3]_21 chrIV:2765180-2765260 2.4e-05 53_[+3]_19 chrIV:11491540-11491620 3e-05 26_[+3]_46 chrX:7989337-7989417 3e-05 53_[+3]_19 chrI:12571122-12571202 3e-05 65_[+3]_7 chrIV:8302026-8302106 4.5e-05 44_[+3]_28 chrIV:4468094-4468174 5.2e-05 35_[+3]_37 chrI:2077005-2077085 5.2e-05 36_[+3]_36 chrX:17633324-17633404 5.8e-05 21_[+3]_51 chrV:9732860-9732940 5.8e-05 4_[+3]_68 chrI:10104318-10104398 7.5e-05 22_[+3]_50 chrX:11198678-11198758 9.3e-05 19_[+3]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRSGCGC width=8 seqs=17 chrIV:1723203-1723283 ( 54) GCAGGCGC 1 chrIII:10537701-10537781 ( 71) GCAGGCGC 1 chrIV:3382509-3382589 ( 67) GCAGGCGC 1 chrX:2215277-2215357 ( 42) GCACGCGC 1 chrIV:3652435-3652515 ( 16) GCGCGCGC 1 chrX:7242337-7242417 ( 52) GCGCGCGC 1 chrIV:2765180-2765260 ( 54) GCGCGCGC 1 chrIV:11491540-11491620 ( 27) GCTGGCGC 1 chrX:7989337-7989417 ( 54) GCTGGCGC 1 chrI:12571122-12571202 ( 66) GCTGGCGC 1 chrIV:8302026-8302106 ( 45) GCATGCGC 1 chrIV:4468094-4468174 ( 36) GCGTGCGC 1 chrI:2077005-2077085 ( 37) GCGTGCGC 1 chrX:17633324-17633404 ( 22) GCAGGCGG 1 chrV:9732860-9732940 ( 5) GCAGGCGG 1 chrI:10104318-10104398 ( 23) GCACGCGG 1 chrX:11198678-11198758 ( 20) GCCCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.4326 E= 6.2e+002 -1073 -1073 221 -1073 -1073 219 -1073 -1073 72 -189 44 -66 -1073 69 112 -66 -1073 -1073 221 -1073 -1073 219 -1073 -1073 -1073 -1073 221 -1073 -1073 191 -30 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 6.2e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.470588 0.058824 0.294118 0.176471 0.000000 0.352941 0.470588 0.176471 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.823529 0.176471 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSGCGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[AG][GC]GCGC -------------------------------------------------------------------------------- Time 12.37 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCAGG MEME-4 width = 8 sites = 12 llr = 122 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a1:a1: pos.-specific C aa:8a:1: probability G ::::::8a matrix T :::1::1: bits 2.2 ** * * 2.0 ** * * 1.8 *** ** * 1.5 *** ** * Relative 1.3 ****** * Entropy 1.1 ****** * (14.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:422505-422585 28 8.86e-06 AAGACCAGGA CCACCAGG GCATCCAGGA chrII:12053027-12053107 47 8.86e-06 CCCACCCCGC CCACCAGG TTCTCACCAG chrX:422274-422354 16 8.86e-06 AAGACGCGGA CCACCAGG ACCAGTTGGA chrIV:9563877-9563957 73 8.86e-06 CCCACCAGGG CCACCAGG chrIV:10217101-10217181 9 8.86e-06 CAGCTGGA CCACCAGG AGAAAACGGA chrII:10707872-10707952 39 8.86e-06 accacaagga ccaccagg agccccagga chrIV:10216900-10216980 57 8.86e-06 CCCAGAagga ccaccagg accagccgga chrII:5695716-5695796 59 1.78e-05 GTGTGGGGTC CCACCACG ACCGAAATGT chrX:8676250-8676330 71 4.08e-05 CCATCCTCCT CCACCAAG GC chrIV:9518822-9518902 33 4.08e-05 GCTAGTAGTG CCACCATG AAGGTAAGAA chrV:11799442-11799522 8 6.36e-05 CGTGGCG CCAACAGG CGTGGGAGTT chrII:10705566-10705646 68 6.36e-05 ACCACAAGGA CCATCAGG AGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:422505-422585 8.9e-06 27_[+4]_45 chrII:12053027-12053107 8.9e-06 46_[+4]_26 chrX:422274-422354 8.9e-06 15_[+4]_57 chrIV:9563877-9563957 8.9e-06 72_[+4] chrIV:10217101-10217181 8.9e-06 8_[+4]_64 chrII:10707872-10707952 8.9e-06 38_[+4]_34 chrIV:10216900-10216980 8.9e-06 56_[+4]_16 chrII:5695716-5695796 1.8e-05 58_[+4]_14 chrX:8676250-8676330 4.1e-05 70_[+4]_2 chrIV:9518822-9518902 4.1e-05 32_[+4]_40 chrV:11799442-11799522 6.4e-05 7_[+4]_65 chrII:10705566-10705646 6.4e-05 67_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCAGG width=8 seqs=12 chrX:422505-422585 ( 28) CCACCAGG 1 chrII:12053027-12053107 ( 47) CCACCAGG 1 chrX:422274-422354 ( 16) CCACCAGG 1 chrIV:9563877-9563957 ( 73) CCACCAGG 1 chrIV:10217101-10217181 ( 9) CCACCAGG 1 chrII:10707872-10707952 ( 39) CCACCAGG 1 chrIV:10216900-10216980 ( 57) CCACCAGG 1 chrII:5695716-5695796 ( 59) CCACCACG 1 chrX:8676250-8676330 ( 71) CCACCAAG 1 chrIV:9518822-9518902 ( 33) CCACCATG 1 chrV:11799442-11799522 ( 8) CCAACAGG 1 chrII:10705566-10705646 ( 68) CCATCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0174 E= 2.1e+002 -1023 219 -1023 -1023 -1023 219 -1023 -1023 181 -1023 -1023 -1023 -178 193 -1023 -174 -1023 219 -1023 -1023 181 -1023 -1023 -1023 -178 -139 179 -174 -1023 -1023 220 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.1e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.833333 0.000000 0.083333 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.083333 0.750000 0.083333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCAGG MEME-4 regular expression -------------------------------------------------------------------------------- CCACCAGG -------------------------------------------------------------------------------- Time 15.79 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAAAAAA MEME-5 width = 8 sites = 30 llr = 251 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAAAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a5a8aaa8 pos.-specific C :1:::::: probability G :4:2:::: matrix T :::::::2 bits 2.2 2.0 1.8 * * *** 1.5 * * *** Relative 1.3 * * *** Entropy 1.1 * ****** (12.1 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11694629-11694709 50 7.87e-05 AATTTTCGAA AAAAAAAA GAAAATGCAA chrII:8015508-8015588 68 7.87e-05 GTATGCGGGA AAAAAAAA ACTGT chrV:5715100-5715180 60 7.87e-05 TAAACAAAGA AGAAAAAA GTTTAACCTC chrI:10104318-10104398 37 7.87e-05 GCGGGAGAAT AAAAAAAA CGAGGTGTTG chrX:343922-344002 62 7.87e-05 TAGACACGTA AAAAAAAA TAGTGTCCGT chrV:11803633-11803713 73 7.87e-05 GCTTTTTTTC AAAAAAAA chrII:15205431-15205511 17 7.87e-05 GAAAAAATGA AGAAAAAA GTGATCGGAA chrX:12761519-12761599 11 7.87e-05 ACGAGGCAGA AGAAAAAA CCAAACAAAC chrX:16775506-16775586 9 7.87e-05 TCAAAATC AGAAAAAA AAAGAATCAG chrII:10019869-10019949 43 7.87e-05 CAGCCAAACA AAAAAAAA TAAAAATTTA chrIV:11718761-11718841 1 7.87e-05 . AAAAAAAA CGGCTAACGA chrIV:1459482-1459562 14 7.87e-05 TTTGAAATTA AAAAAAAA TAAATTCATT chrIII:8782918-8782998 36 7.87e-05 TGCTTCGTCG AAAAAAAA GCGTCGACAT chrIII:7305160-7305240 23 7.87e-05 CACCAAAAAC AAAAAAAA GAGTAGAGAG chrIV:9376654-9376734 72 7.87e-05 GAAGCAGACa agaaaaaa g chrX:1478115-1478195 16 7.87e-05 AACCTCAGCG AGAAAAAA AGTGGGAACA chrII:6562250-6562330 66 7.87e-05 TTGGTTTTGG AAAAAAAA GGCCAAG chrX:13348621-13348701 66 1.38e-04 CATTATAAAG AAAGAAAA GTGGAAT chrIII:3902795-3902875 30 1.38e-04 TAACCAAAAA AGAGAAAA AGTTTTTTGG chrIV:10976059-10976139 12 1.38e-04 CGAGAGATGA AGAGAAAA ATATCGAGAA chrIV:9868119-9868199 26 1.38e-04 TCAAAAAGGA AGAGAAAA CTCTAGAGAA chrX:9528097-9528177 69 1.38e-04 GATAAAAATA AAAGAAAA GAGA chrIV:2772454-2772534 67 1.38e-04 TGATGATTCT AGAGAAAA AGGTCA chrX:4148606-4148686 28 2.15e-04 TGTAACAATT AAAAAAAT CTGAAATATG chrI:7857596-7857676 72 2.15e-04 TGACAGTTTC AGAAAAAT C chrIII:10241499-10241579 14 2.15e-04 TTCGAAAGAC AAAAAAAT GTGATAAGCG chrI:7869001-7869081 37 2.15e-04 cagaactcct agaaaaat cgagaaaatt chrV:18639923-18640003 51 2.15e-04 TGCATTTTTC AAAAAAAT TCATTGGATT chrX:11968410-11968490 68 2.49e-04 CAGCATCTCG ACAAAAAA TTTCA chrI:12055293-12055373 68 2.49e-04 ggtttgatct acaaaaaa tgcgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11694629-11694709 7.9e-05 49_[+5]_23 chrII:8015508-8015588 7.9e-05 67_[+5]_5 chrV:5715100-5715180 7.9e-05 59_[+5]_13 chrI:10104318-10104398 7.9e-05 36_[+5]_36 chrX:343922-344002 7.9e-05 61_[+5]_11 chrV:11803633-11803713 7.9e-05 72_[+5] chrII:15205431-15205511 7.9e-05 16_[+5]_56 chrX:12761519-12761599 7.9e-05 10_[+5]_62 chrX:16775506-16775586 7.9e-05 8_[+5]_64 chrII:10019869-10019949 7.9e-05 42_[+5]_30 chrIV:11718761-11718841 7.9e-05 [+5]_72 chrIV:1459482-1459562 7.9e-05 13_[+5]_59 chrIII:8782918-8782998 7.9e-05 35_[+5]_37 chrIII:7305160-7305240 7.9e-05 22_[+5]_50 chrIV:9376654-9376734 7.9e-05 71_[+5]_1 chrX:1478115-1478195 7.9e-05 15_[+5]_57 chrII:6562250-6562330 7.9e-05 65_[+5]_7 chrX:13348621-13348701 0.00014 65_[+5]_7 chrIII:3902795-3902875 0.00014 29_[+5]_43 chrIV:10976059-10976139 0.00014 11_[+5]_61 chrIV:9868119-9868199 0.00014 25_[+5]_47 chrX:9528097-9528177 0.00014 68_[+5]_4 chrIV:2772454-2772534 0.00014 66_[+5]_6 chrX:4148606-4148686 0.00021 27_[+5]_45 chrI:7857596-7857676 0.00021 71_[+5]_1 chrIII:10241499-10241579 0.00021 13_[+5]_59 chrI:7869001-7869081 0.00021 36_[+5]_36 chrV:18639923-18640003 0.00021 50_[+5]_22 chrX:11968410-11968490 0.00025 67_[+5]_5 chrI:12055293-12055373 0.00025 67_[+5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAAAAAA width=8 seqs=30 chrIII:11694629-11694709 ( 50) AAAAAAAA 1 chrII:8015508-8015588 ( 68) AAAAAAAA 1 chrV:5715100-5715180 ( 60) AGAAAAAA 1 chrI:10104318-10104398 ( 37) AAAAAAAA 1 chrX:343922-344002 ( 62) AAAAAAAA 1 chrV:11803633-11803713 ( 73) AAAAAAAA 1 chrII:15205431-15205511 ( 17) AGAAAAAA 1 chrX:12761519-12761599 ( 11) AGAAAAAA 1 chrX:16775506-16775586 ( 9) AGAAAAAA 1 chrII:10019869-10019949 ( 43) AAAAAAAA 1 chrIV:11718761-11718841 ( 1) AAAAAAAA 1 chrIV:1459482-1459562 ( 14) AAAAAAAA 1 chrIII:8782918-8782998 ( 36) AAAAAAAA 1 chrIII:7305160-7305240 ( 23) AAAAAAAA 1 chrIV:9376654-9376734 ( 72) AGAAAAAA 1 chrX:1478115-1478195 ( 16) AGAAAAAA 1 chrII:6562250-6562330 ( 66) AAAAAAAA 1 chrX:13348621-13348701 ( 66) AAAGAAAA 1 chrIII:3902795-3902875 ( 30) AGAGAAAA 1 chrIV:10976059-10976139 ( 12) AGAGAAAA 1 chrIV:9868119-9868199 ( 26) AGAGAAAA 1 chrX:9528097-9528177 ( 69) AAAGAAAA 1 chrIV:2772454-2772534 ( 67) AGAGAAAA 1 chrX:4148606-4148686 ( 28) AAAAAAAT 1 chrI:7857596-7857676 ( 72) AGAAAAAT 1 chrIII:10241499-10241579 ( 14) AAAAAAAT 1 chrI:7869001-7869081 ( 37) AGAAAAAT 1 chrV:18639923-18640003 ( 51) AAAAAAAT 1 chrX:11968410-11968490 ( 68) ACAAAAAA 1 chrI:12055293-12055373 ( 68) ACAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 2.0e+002 181 -1155 -1155 -1155 90 -171 88 -1155 181 -1155 -1155 -1155 148 -1155 -12 -1155 181 -1155 -1155 -1155 181 -1155 -1155 -1155 181 -1155 -1155 -1155 154 -1155 -1155 -74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.0e+002 1.000000 0.000000 0.000000 0.000000 0.533333 0.066667 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAAA MEME-5 regular expression -------------------------------------------------------------------------------- A[AG]A[AG]AAAA -------------------------------------------------------------------------------- Time 19.19 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:10216900-10216980 3.48e-02 29_[+4(4.08e-05)]_19_[+4(8.86e-06)]_\ 16 chrII:10707872-10707952 4.51e-02 38_[+4(8.86e-06)]_34 chrII:13751219-13751299 1.47e-01 6_[+2(5.59e-05)]_25_[+2(2.78e-05)]_\ 8_[+2(5.59e-05)]_17 chrV:11616536-11616616 4.96e-01 80 chrV:5836218-5836298 7.29e-01 80 chrII:3036465-3036545 5.36e-01 80 chrIV:9564147-9564227 1.02e-01 25_[+1(4.98e-05)]_1_[+1(4.98e-05)]_\ 38 chrV:5836417-5836497 8.95e-01 80 chrIV:1459277-1459357 6.71e-03 21_[+1(2.78e-05)]_51 chrIV:10217101-10217181 1.44e-02 8_[+4(8.86e-06)]_64 chrIII:13556233-13556313 2.35e-01 2_[+2(5.59e-05)]_70 chrIV:9563877-9563957 1.18e-02 45_[+4(4.08e-05)]_10_[+4(8.86e-06)]_\ 1_[+4(8.86e-06)] chrV:11094893-11094973 7.23e-02 2_[+1(4.98e-05)]_70 chrII:8820711-8820791 7.15e-01 80 chrII:12054763-12054843 2.31e-01 80 chrV:5410811-5410891 3.26e-02 53_[+1(4.98e-05)]_19 chrII:8259827-8259907 6.22e-01 80 chrX:422274-422354 3.69e-02 15_[+4(8.86e-06)]_57 chrV:4192827-4192907 1.14e-02 67_[+1(2.78e-05)]_5 chrX:15076248-15076328 6.95e-01 80 chrV:11616759-11616839 2.13e-01 80 chrIV:2772454-2772534 6.40e-02 80 chrIII:12843013-12843093 9.58e-01 80 chrX:15796742-15796822 7.07e-01 80 chrIV:3382509-3382589 2.33e-03 66_[+3(6.66e-06)]_6 chrIII:13550159-13550239 6.89e-02 50_[+2(2.78e-05)]_22 chrV:4189807-4189887 6.06e-01 80 chrIV:2765180-2765260 8.84e-02 53_[+3(2.35e-05)]_19 chrIV:4480414-4480494 7.64e-01 80 chrII:6562250-6562330 4.75e-02 65_[+5(7.87e-05)]_7 chrII:12053027-12053107 3.22e-03 46_[+4(8.86e-06)]_26 chrII:10450558-10450638 5.66e-01 80 chrV:18573420-18573500 2.64e-01 80 chrX:13469519-13469599 9.91e-01 80 chrV:6326537-6326617 3.66e-01 80 chrX:13544847-13544927 9.09e-01 80 chrX:17421037-17421117 9.51e-01 80 chrIV:13077861-13077941 2.45e-01 80 chrII:10391913-10391993 4.47e-01 80 chrX:9528097-9528177 2.12e-02 80 chrI:6498314-6498394 7.75e-01 80 chrI:12055293-12055373 3.80e-03 31_[+1(2.78e-05)]_41 chrX:7990452-7990532 3.00e-01 80 chrIV:15398732-15398812 9.11e-01 80 chrV:18639923-18640003 9.02e-02 80 chrX:12105494-12105574 7.93e-01 80 chrV:6652298-6652378 4.91e-01 80 chrX:5630110-5630190 1.06e-01 9_[+1(2.78e-05)]_63 chrII:11841874-11841954 3.29e-01 80 chrV:12302364-12302444 1.10e-01 69_[+2(5.59e-05)]_3 chrV:10887592-10887672 4.49e-01 80 chrX:5122488-5122568 9.78e-02 80 chrIV:16168095-16168175 2.90e-01 80 chrX:1478115-1478195 2.84e-03 15_[+5(7.87e-05)]_57 chrIV:9376654-9376734 1.47e-02 7_[+2(5.59e-05)]_56_[+5(7.87e-05)]_\ 1 chrV:8939954-8940034 1.46e-01 80 chrIII:7305160-7305240 2.90e-03 22_[+5(7.87e-05)]_42_[+2(5.59e-05)] chrIII:6418591-6418671 5.30e-02 80 chrV:18638597-18638677 9.04e-01 80 chrIII:10537701-10537781 1.39e-04 70_[+3(6.66e-06)]_2 chrIII:3377903-3377983 1.75e-01 80 chrV:12553321-12553401 6.87e-02 80 chrX:9147119-9147199 5.03e-01 80 chrIV:9518822-9518902 3.71e-03 32_[+4(4.08e-05)]_28_[+1(2.78e-05)]_\ 4 chrI:12571122-12571202 1.46e-03 65_[+3(3.00e-05)]_7 chrX:2893235-2893315 4.28e-01 80 chrII:12050778-12050858 4.38e-01 80 chrIII:8782918-8782998 1.03e-01 35_[+5(7.87e-05)]_37 chrII:7790830-7790910 5.60e-01 80 chrIII:6509768-6509848 8.74e-01 80 chrI:7869001-7869081 4.56e-01 80 chrIV:1459482-1459562 2.31e-01 12_[+5(7.87e-05)]_60 chrIII:9783591-9783671 1.39e-01 80 chrV:13202306-13202386 5.07e-01 80 chrIII:12839113-12839193 2.21e-02 20_[+1(4.98e-05)]_52 chrX:13108867-13108947 3.19e-01 80 chrI:2869585-2869665 8.02e-02 80 chrX:7989337-7989417 7.20e-02 53_[+3(3.00e-05)]_19 chrV:19519623-19519703 8.40e-01 80 chrV:5587241-5587321 8.73e-01 80 chrIV:11718761-11718841 6.62e-02 [+5(7.87e-05)]_72 chrII:1315423-1315503 1.58e-01 36_[+2(5.59e-05)]_36 chrIV:309654-309734 1.48e-01 80 chrV:16213498-16213578 1.76e-02 80 chrIV:17474193-17474273 1.26e-01 80 chrII:5283118-5283198 7.05e-01 80 chrV:7413513-7413593 4.19e-01 80 chrIV:1871144-1871224 3.01e-01 80 chrII:4748486-4748566 1.84e-03 62_[+1(8.46e-06)]_10 chrII:10553588-10553668 1.65e-01 80 chrV:11147872-11147952 6.39e-01 80 chrII:15212559-15212639 7.37e-02 80 chrV:9734255-9734335 9.30e-01 80 chrII:11642193-11642273 3.86e-01 80 chrII:10019869-10019949 1.03e-02 41_[+5(7.87e-05)]_31 chrIV:15673159-15673239 5.32e-01 80 chrX:502854-502934 4.03e-02 80 chrIII:6145422-6145502 8.10e-01 80 chrII:10547487-10547567 1.31e-04 54_[+4(1.78e-05)]_18 chrIII:10339468-10339548 5.54e-01 80 chrIV:11491540-11491620 1.99e-03 10_[+2(2.78e-05)]_8_[+3(3.00e-05)]_\ 46 chrI:2077005-2077085 7.50e-03 36_[+3(5.16e-05)]_14_[+1(2.78e-05)]_\ 14 chrIII:10534349-10534429 4.39e-02 33_[+1(7.46e-05)]_39 chrV:11119469-11119549 2.40e-01 80 chrV:14660735-14660815 8.59e-01 80 chrII:4745427-4745507 1.24e-01 80 chrIV:4294699-4294779 3.29e-01 80 chrX:7242337-7242417 2.18e-02 51_[+3(2.35e-05)]_21 chrII:11836782-11836862 8.04e-01 80 chrIV:13392388-13392468 6.02e-01 80 chrX:17138281-17138361 6.31e-01 80 chrX:864367-864447 1.15e-02 34_[+2(9.96e-05)]_38 chrV:6238578-6238658 4.14e-02 25_[+2(9.96e-05)]_47 chrII:8817300-8817380 7.54e-01 80 chrX:16775506-16775586 4.11e-01 8_[+5(7.87e-05)]_64 chrX:6232296-6232376 8.85e-02 80 chrIII:3806453-3806533 2.21e-02 43_[+4(8.67e-05)]_29 chrIII:7488453-7488533 2.94e-02 80 chrV:11859234-11859314 2.78e-01 80 chrX:1492331-1492411 6.09e-01 80 chrV:9516434-9516514 2.11e-01 80 chrX:14437980-14438060 2.40e-01 80 chrX:12761519-12761599 2.86e-01 10_[+5(7.87e-05)]_62 chrIV:3373603-3373683 1.81e-01 80 chrX:14477573-14477653 6.03e-01 80 chrV:5224905-5224985 8.99e-01 80 chrII:4600317-4600397 5.05e-01 80 chrX:422505-422585 4.16e-02 27_[+4(8.86e-06)]_45 chrV:7434249-7434329 1.44e-01 80 chrIV:4473839-4473919 6.81e-01 80 chrX:15706262-15706342 1.89e-01 80 chrX:5078252-5078332 5.44e-01 80 chrX:11190572-11190652 7.87e-01 80 chrV:11802620-11802700 7.63e-01 80 chrII:15205431-15205511 4.44e-04 16_[+5(7.87e-05)]_39_[+1(7.46e-05)]_\ 9 chrV:15564092-15564172 1.38e-02 6_[+2(2.78e-05)]_66 chrIII:8739289-8739369 2.04e-04 22_[+2(2.78e-05)]_19_[+1(8.46e-06)]_\ 23 chrV:11803633-11803713 1.10e-03 63_[+2(5.59e-05)]_1_[+5(7.87e-05)] chrX:8018567-8018647 7.40e-02 80 chrIII:10241499-10241579 1.51e-03 66_[+2(2.78e-05)]_6 chrV:19520396-19520476 5.40e-01 80 chrX:12663566-12663646 1.99e-01 80 chrX:15079561-15079641 2.32e-01 80 chrII:4874610-4874690 7.73e-01 80 chrIII:10245472-10245552 8.78e-01 80 chrIV:12427832-12427912 7.17e-01 80 chrX:8676250-8676330 1.41e-03 34_[+2(5.59e-05)]_5_[+2(5.59e-05)]_\ 15_[+4(4.08e-05)]_2 chrII:10705566-10705646 1.43e-01 67_[+4(6.36e-05)]_5 chrV:13201071-13201151 5.47e-01 80 chrIV:10250806-10250886 4.02e-01 80 chrX:11198678-11198758 3.21e-03 4_[+2(2.78e-05)]_7_[+3(9.34e-05)]_\ 53 chrII:12994156-12994236 1.47e-01 80 chrII:13150064-13150144 9.37e-02 80 chrX:12425541-12425621 4.63e-01 80 chrII:5695716-5695796 3.97e-02 58_[+4(1.78e-05)]_14 chrX:11968410-11968490 8.40e-02 80 chrV:9088925-9089005 9.53e-01 80 chrX:1026833-1026913 2.45e-03 4_[+2(2.78e-05)]_59_[+1(8.89e-05)]_\ 1 chrII:5605572-5605652 1.84e-01 80 chrII:12042672-12042752 1.59e-01 80 chrV:11535619-11535699 5.37e-01 80 chrIV:1722840-1722920 7.87e-01 80 chrII:5892866-5892946 1.36e-01 11_[+2(2.78e-05)]_17_[+2(2.78e-05)]_\ 36 chrX:3092615-3092695 9.34e-01 80 chrV:7415977-7416057 5.49e-01 80 chrV:14448851-14448931 1.86e-03 2_[+4(8.67e-05)]_70 chrIV:11021705-11021785 2.76e-01 80 chrX:343922-344002 1.19e-02 60_[+5(7.87e-05)]_12 chrV:5823157-5823237 4.82e-01 80 chrIV:2314314-2314394 5.17e-01 80 chrII:13678706-13678786 4.77e-01 80 chrIV:1723203-1723283 1.31e-02 53_[+3(6.66e-06)]_19 chrV:4653184-4653264 5.54e-01 80 chrV:5685354-5685434 3.13e-01 80 chrIV:13082361-13082441 1.46e-01 80 chrIV:9868119-9868199 3.85e-02 80 chrIV:5764449-5764529 5.16e-01 80 chrI:7857596-7857676 1.44e-01 80 chrII:15203707-15203787 4.83e-02 42_[+2(2.78e-05)]_30 chrI:8344570-8344650 7.65e-02 80 chrII:13954264-13954344 9.53e-01 80 chrX:14508077-14508157 1.57e-01 80 chrIII:11738713-11738793 7.82e-03 80 chrI:10104318-10104398 7.66e-04 22_[+3(7.49e-05)]_6_[+5(7.87e-05)]_\ 36 chrX:2215277-2215357 9.51e-03 41_[+3(1.84e-05)]_31 chrIV:3652435-3652515 6.10e-03 13_[+3(2.35e-05)]_59 chrIV:8028441-8028521 1.37e-01 80 chrV:5715100-5715180 1.89e-01 59_[+5(7.87e-05)]_13 chrV:4730248-4730328 5.27e-01 80 chrIV:11913299-11913379 7.90e-01 80 chrV:12063195-12063275 2.81e-01 80 chrX:2070843-2070923 3.98e-01 80 chrIV:2710677-2710757 1.48e-01 80 chrX:13470800-13470880 1.87e-01 80 chrV:727711-727791 5.11e-02 32_[+1(4.98e-05)]_40 chrII:14408073-14408153 5.84e-01 80 chrIV:10976059-10976139 1.13e-01 80 chrV:4186532-4186612 2.71e-01 80 chrV:5502748-5502828 7.00e-01 80 chrI:7008836-7008916 9.22e-01 80 chrIV:4641085-4641165 4.05e-01 80 chrII:8015508-8015588 8.23e-02 66_[+5(7.87e-05)]_6 chrX:4148606-4148686 2.49e-01 80 chrII:12060048-12060128 8.29e-01 80 chrII:1142185-1142265 8.36e-01 80 chrX:5135778-5135858 6.90e-01 80 chrII:12058523-12058603 4.07e-01 80 chrII:13674069-13674149 4.53e-02 80 chrIV:3647684-3647764 4.40e-01 80 chrV:11799442-11799522 5.75e-02 7_[+4(6.36e-05)]_65 chrX:2590889-2590969 6.74e-01 80 chrIII:4096496-4096576 2.25e-01 80 chrIV:11901391-11901471 1.10e-01 80 chrV:10473153-10473233 2.43e-01 80 chrI:1699722-1699802 8.42e-01 80 chrV:10953871-10953951 9.64e-01 80 chrV:15661179-15661259 5.46e-01 80 chrV:10954078-10954158 2.40e-01 80 chrX:8674673-8674753 9.81e-01 80 chrIII:5920202-5920282 5.69e-02 19_[+1(7.46e-05)]_53 chrV:20690034-20690114 4.93e-01 80 chrX:17063969-17064049 9.64e-02 80 chrI:7268380-7268460 5.70e-01 80 chrIII:65596-65676 3.41e-01 80 chrIV:4408864-4408944 4.60e-01 80 chrV:11888103-11888183 7.93e-03 41_[+1(7.46e-05)]_31 chrII:8020816-8020896 3.53e-02 80 chrX:3540973-3541053 3.47e-01 80 chrIV:12716127-12716207 1.83e-02 80 chrIII:11694629-11694709 1.24e-01 47_[+5(7.87e-05)]_25 chrIII:3902795-3902875 1.08e-02 38_[+2(7.77e-05)]_34 chrV:9732860-9732940 8.84e-02 4_[+3(5.82e-05)]_68 chrII:4748742-4748822 9.77e-01 80 chrIV:4401041-4401121 9.95e-01 80 chrIV:8302026-8302106 1.71e-02 44_[+3(4.51e-05)]_28 chrV:1438959-1439039 1.56e-01 51_[+1(2.78e-05)]_21 chrX:17633324-17633404 1.38e-03 21_[+3(5.82e-05)]_51 chrV:5780859-5780939 1.94e-01 80 chrV:13567260-13567340 2.23e-02 80 chrII:8745225-8745305 9.42e-01 80 chrIII:12021416-12021496 3.08e-02 13_[+1(7.46e-05)]_59 chrIV:4468094-4468174 3.92e-02 35_[+3(5.16e-05)]_37 chrIV:10782139-10782219 5.90e-02 3_[+1(8.89e-05)]_69 chrI:2945584-2945664 8.60e-01 80 chrI:1051020-1051100 1.50e-01 80 chrX:17640984-17641064 7.05e-02 3_[+1(4.98e-05)]_4_[+1(4.98e-05)]_\ 57 chrX:17421236-17421316 2.23e-01 80 chrX:13348621-13348701 1.50e-02 [+1(4.98e-05)]_72 chrII:11838503-11838583 8.06e-01 80 chrV:4823842-4823922 1.86e-02 64_[+2(7.77e-05)]_8 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************