******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-18.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:5455642-5455722 1.0000 80 chrV:1599259-1599339 1.0000 80 chrIII:8852902-8852982 1.0000 80 chrX:9117688-9117768 1.0000 80 chrX:34569-34649 1.0000 80 chrIII:10266975-10267055 1.0000 80 chrIV:2671573-2671653 1.0000 80 chrIV:2650843-2650923 1.0000 80 chrI:12956112-12956192 1.0000 80 chrIII:7669236-7669316 1.0000 80 chrIII:7669477-7669557 1.0000 80 chrII:416954-417034 1.0000 80 chrV:8057961-8058041 1.0000 80 chrV:15538081-15538161 1.0000 80 chrIII:9433757-9433837 1.0000 80 chrIII:12316692-12316772 1.0000 80 chrIII:6188188-6188268 1.0000 80 chrII:6056077-6056157 1.0000 80 chrX:15707196-15707276 1.0000 80 chrIV:2776894-2776974 1.0000 80 chrIV:8923529-8923609 1.0000 80 chrV:18619334-18619414 1.0000 80 chrII:3036490-3036570 1.0000 80 chrI:6660243-6660323 1.0000 80 chrII:3130215-3130295 1.0000 80 chrIV:1878730-1878810 1.0000 80 chrV:19008090-19008170 1.0000 80 chrIII:536466-536546 1.0000 80 chrII:13958505-13958585 1.0000 80 chrV:19380180-19380260 1.0000 80 chrI:10718345-10718425 1.0000 80 chrIII:8861172-8861252 1.0000 80 chrI:5157937-5158017 1.0000 80 chrIII:7795454-7795534 1.0000 80 chrV:5047388-5047468 1.0000 80 chrV:18575391-18575471 1.0000 80 chrV:16203834-16203914 1.0000 80 chrV:15392241-15392321 1.0000 80 chrX:13918312-13918392 1.0000 80 chrII:650449-650529 1.0000 80 chrV:15538280-15538360 1.0000 80 chrIII:13341062-13341142 1.0000 80 chrX:14435806-14435886 1.0000 80 chrI:10720348-10720428 1.0000 80 chrX:12453626-12453706 1.0000 80 chrX:5486099-5486179 1.0000 80 chrV:12599622-12599702 1.0000 80 chrV:9382695-9382775 1.0000 80 chrIII:10267233-10267313 1.0000 80 chrV:18619533-18619613 1.0000 80 chrIII:6171398-6171478 1.0000 80 chrI:5158138-5158218 1.0000 80 chrIII:13160778-13160858 1.0000 80 chrII:3039692-3039772 1.0000 80 chrIV:2651045-2651125 1.0000 80 chrV:13672034-13672114 1.0000 80 chrIV:4744427-4744507 1.0000 80 chrIII:13341274-13341354 1.0000 80 chrIII:3695551-3695631 1.0000 80 chrIII:5719970-5720050 1.0000 80 chrV:18573624-18573704 1.0000 80 chrII:3036691-3036771 1.0000 80 chrV:16204039-16204119 1.0000 80 chrX:5059513-5059593 1.0000 80 chrV:1870759-1870839 1.0000 80 chrIV:6664397-6664477 1.0000 80 chrI:12571341-12571421 1.0000 80 chrIII:7712055-7712135 1.0000 80 chrV:19148483-19148563 1.0000 80 chrIII:3697369-3697449 1.0000 80 chrV:15767544-15767624 1.0000 80 chrII:650655-650735 1.0000 80 chrV:20484638-20484718 1.0000 80 chrI:4587329-4587409 1.0000 80 chrI:8574391-8574471 1.0000 80 chrV:19374455-19374535 1.0000 80 chrI:12954715-12954795 1.0000 80 chrIII:2598608-2598688 1.0000 80 chrII:6049729-6049809 1.0000 80 chrV:20486029-20486109 1.0000 80 chrIII:3174054-3174134 1.0000 80 chrI:2914593-2914673 1.0000 80 chrIII:4489074-4489154 1.0000 80 chrII:7758567-7758647 1.0000 80 chrIV:2655182-2655262 1.0000 80 chrV:19024267-19024347 1.0000 80 chrX:3204161-3204241 1.0000 80 chrII:1403326-1403406 1.0000 80 chrIII:9617090-9617170 1.0000 80 chrIII:1316988-1317068 1.0000 80 chrIV:15042295-15042375 1.0000 80 chrIII:3234622-3234702 1.0000 80 chrIV:15473688-15473768 1.0000 80 chrI:1712342-1712422 1.0000 80 chrIV:15793382-15793462 1.0000 80 chrIV:8923750-8923830 1.0000 80 chrV:19012348-19012428 1.0000 80 chrV:20483638-20483718 1.0000 80 chrI:12571130-12571210 1.0000 80 chrI:12956980-12957060 1.0000 80 chrIV:5541435-5541515 1.0000 80 chrV:18573419-18573499 1.0000 80 chrIII:13343548-13343628 1.0000 80 chrX:14137688-14137768 1.0000 80 chrIII:634730-634810 1.0000 80 chrV:15065546-15065626 1.0000 80 chrX:11662735-11662815 1.0000 80 chrIII:10320564-10320644 1.0000 80 chrV:19212595-19212675 1.0000 80 chrIV:4047815-4047895 1.0000 80 chrV:19031145-19031225 1.0000 80 chrX:2559560-2559640 1.0000 80 chrV:19373373-19373453 1.0000 80 chrII:6046151-6046231 1.0000 80 chrV:9384517-9384597 1.0000 80 chrI:4587538-4587618 1.0000 80 chrI:3223011-3223091 1.0000 80 chrI:6466000-6466080 1.0000 80 chrIII:7928694-7928774 1.0000 80 chrV:18712246-18712326 1.0000 80 chrV:19371980-19372060 1.0000 80 chrI:11497943-11498023 1.0000 80 chrIII:9408485-9408565 1.0000 80 chrV:18684553-18684633 1.0000 80 chrI:5828232-5828312 1.0000 80 chrII:14245024-14245104 1.0000 80 chrX:6505175-6505255 1.0000 80 chrIII:2598820-2598900 1.0000 80 chrIII:1037320-1037400 1.0000 80 chrV:16793506-16793586 1.0000 80 chrIV:15046157-15046237 1.0000 80 chrIII:3868507-3868587 1.0000 80 chrV:8413766-8413846 1.0000 80 chrII:1402320-1402400 1.0000 80 chrIII:2711683-2711763 1.0000 80 chrII:3039895-3039975 1.0000 80 chrIII:10708549-10708629 1.0000 80 chrI:10970246-10970326 1.0000 80 chrII:8158152-8158232 1.0000 80 chrV:13664495-13664575 1.0000 80 chrIII:9443160-9443240 1.0000 80 chrX:4588091-4588171 1.0000 80 chrV:19023410-19023490 1.0000 80 chrII:11694598-11694678 1.0000 80 chrIV:4538800-4538880 1.0000 80 chrIII:7495851-7495931 1.0000 80 chrI:14731721-14731801 1.0000 80 chrIII:5727973-5728053 1.0000 80 chrIV:2931299-2931379 1.0000 80 chrIII:4999100-4999180 1.0000 80 chrX:2639310-2639390 1.0000 80 chrX:2634278-2634358 1.0000 80 chrI:7287846-7287926 1.0000 80 chrIII:3171499-3171579 1.0000 80 chrII:14247368-14247448 1.0000 80 chrI:11745571-11745651 1.0000 80 chrIV:813524-813604 1.0000 80 chrII:7147722-7147802 1.0000 80 chrI:5138071-5138151 1.0000 80 chrIII:6210602-6210682 1.0000 80 chrI:6282543-6282623 1.0000 80 chrI:6358574-6358654 1.0000 80 chrIV:14464974-14465054 1.0000 80 chrI:7726614-7726694 1.0000 80 chrI:946058-946138 1.0000 80 chrII:1402528-1402608 1.0000 80 chrV:18895143-18895223 1.0000 80 chrIV:14889056-14889136 1.0000 80 chrIV:4347823-4347903 1.0000 80 chrV:15769249-15769329 1.0000 80 chrV:19079275-19079355 1.0000 80 chrIV:15933292-15933372 1.0000 80 chrII:873556-873636 1.0000 80 chrIV:15476499-15476579 1.0000 80 chrV:19821436-19821516 1.0000 80 chrIV:15187672-15187752 1.0000 80 chrIV:15473888-15473968 1.0000 80 chrIV:13786833-13786913 1.0000 80 chrV:18389989-18390069 1.0000 80 chrIV:13870282-13870362 1.0000 80 chrI:7707399-7707479 1.0000 80 chrV:20486267-20486347 1.0000 80 chrI:3788747-3788827 1.0000 80 chrI:12728323-12728403 1.0000 80 chrIV:2349069-2349149 1.0000 80 chrIV:8888668-8888748 1.0000 80 chrI:9665425-9665505 1.0000 80 chrIII:9745814-9745894 1.0000 80 chrII:417157-417237 1.0000 80 chrIII:4695335-4695415 1.0000 80 chrV:5275127-5275207 1.0000 80 chrV:7221198-7221278 1.0000 80 chrV:19032188-19032268 1.0000 80 chrV:19001096-19001176 1.0000 80 chrV:8355611-8355691 1.0000 80 chrX:5298292-5298372 1.0000 80 chrIV:15530547-15530627 1.0000 80 chrIII:7102374-7102454 1.0000 80 chrIV:8826737-8826817 1.0000 80 chrII:3038487-3038567 1.0000 80 chrIV:13701643-13701723 1.0000 80 chrV:8499577-8499657 1.0000 80 chrII:11676104-11676184 1.0000 80 chrIII:1164796-1164876 1.0000 80 chrIII:4449547-4449627 1.0000 80 chrII:730102-730182 1.0000 80 chrI:5290815-5290895 1.0000 80 chrIII:7773324-7773404 1.0000 80 chrI:2996028-2996108 1.0000 80 chrX:5485774-5485854 1.0000 80 chrV:18676447-18676527 1.0000 80 chrII:7298455-7298535 1.0000 80 chrV:5717416-5717496 1.0000 80 chrV:8495241-8495321 1.0000 80 chrI:1712550-1712630 1.0000 80 chrIII:1163350-1163430 1.0000 80 chrV:12683370-12683450 1.0000 80 chrV:9513757-9513837 1.0000 80 chrV:5510106-5510186 1.0000 80 chrII:8743134-8743214 1.0000 80 chrIII:7771160-7771240 1.0000 80 chrV:10203810-10203890 1.0000 80 chrI:5176028-5176108 1.0000 80 chrII:7309955-7310035 1.0000 80 chrV:19821773-19821853 1.0000 80 chrIII:634930-635010 1.0000 80 chrV:13664694-13664774 1.0000 80 chrIII:9523735-9523815 1.0000 80 chrX:12860848-12860928 1.0000 80 chrV:19142759-19142839 1.0000 80 chrIV:6664607-6664687 1.0000 80 chrV:5275328-5275408 1.0000 80 chrI:7087766-7087846 1.0000 80 chrV:18388386-18388466 1.0000 80 chrI:6220058-6220138 1.0000 80 chrII:11651330-11651410 1.0000 80 chrI:5357200-5357280 1.0000 80 chrIII:4984925-4985005 1.0000 80 chrI:5291930-5292010 1.0000 80 chrIII:9616857-9616937 1.0000 80 chrIII:1744648-1744728 1.0000 80 chrIV:3338496-3338576 1.0000 80 chrIV:10368003-10368083 1.0000 80 chrI:9671965-9672045 1.0000 80 chrIV:4360661-4360741 1.0000 80 chrIV:1496115-1496195 1.0000 80 chrV:13027002-13027082 1.0000 80 chrIV:4389282-4389362 1.0000 80 chrV:18178396-18178476 1.0000 80 chrII:7123227-7123307 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ztf-18/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-18.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.277 C 0.229 G 0.227 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.277 C 0.229 G 0.227 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCGCMAR MEME-1 width = 8 sites = 107 llr = 835 E-value = 2.1e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGCMAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1495 pos.-specific C 3:a:861: probability G :a:a::15 matrix T 7:::1::: bits 2.1 * 1.9 *** 1.7 *** 1.5 *** Relative 1.3 **** Entropy 1.1 **** * (11.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGCCAA consensus C A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCMAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4360661-4360741 30 1.04e-05 GCACGAGAAA TGCGCCAG CACACTACCT chrII:873556-873636 46 1.04e-05 GCACCGAAAG TGCGCCAG CTAGCCCGTT chrV:13664495-13664575 44 1.04e-05 GATCGATTTA TGCGCCAG TGACGCTTAT chrI:10970246-10970326 22 1.04e-05 GATCGAGTTA TGCGCCAG CAATTTTGTT chrII:3039895-3039975 66 1.04e-05 ACTCTAGAAG TGCGCCAG GACGCTG chrV:19371980-19372060 38 1.04e-05 GCACTGGAAT TGCGCCAG GGCACTGGAA chrI:3223011-3223091 47 1.04e-05 GATCGCGAAA TGCGCCAG CAATGCACCG chrV:19212595-19212675 54 1.04e-05 GCACGAGAAG TGCGCCAG GGCGCCAAAC chrX:11662735-11662815 30 1.04e-05 GCACAAAAAG TGCGCCAG TGTCCAATGC chrV:20483638-20483718 30 1.04e-05 GCACTGGAAA TGCGCCAG CAAGCCCATT chrIII:9617090-9617170 55 1.04e-05 ACACGAGAGA TGCGCCAG CAACTTCCGC chrV:19024267-19024347 20 1.04e-05 GCACCAGAAA TGCGCCAG TGCACTGAAA chrIII:3174054-3174134 12 1.04e-05 TATCGAGAAA TGCGCCAG TAAAATTGTA chrX:5059513-5059593 51 1.04e-05 catcgagaag tgcgccag cacgagagtg chrIII:13341062-13341142 12 1.04e-05 GCACGAGAGT TGCGCCAG TCGCCGCGCC chrV:19008090-19008170 28 1.04e-05 TCACCAAAAG TGCGCCAG CAAACTTCTG chrIV:8923529-8923609 42 1.04e-05 TCACGCCGAA TGCGCCAG CAGTAGTACT chrX:34569-34649 20 1.04e-05 GCACGAGAAA TGCGCCAG CAAAGTCTAC chrIV:1496115-1496195 45 2.32e-05 GTGTTTCTCG TGCGCCAA GGAACGTGGA chrV:9513757-9513837 24 2.32e-05 GCGCACATAA TGCGCCAA CAGAGATTGC chrV:19032188-19032268 4 2.32e-05 AAA TGCGCCAA TTATTATTAT chrI:946058-946138 44 2.32e-05 GCGCTACCAT TGCGCCAA GCAGTCACAT chrV:19373373-19373453 32 2.32e-05 GCACTAGAAT TGCGCCAA GACACAATAA chrIV:5541435-5541515 60 2.32e-05 TCACTCGATC TGCGCCAA CAGCTGAGAT chrV:19374455-19374535 34 2.32e-05 GCACTGGAAT TGCGCCAA GTAACTGAAA chrII:3036691-3036771 32 2.32e-05 ACATAAAGAA TGCGCCAA GGCACGCAAA chrIII:5719970-5720050 64 2.32e-05 TAACCCAACA TGCGCCAA CACTTTTCA chrIV:2651045-2651125 43 2.32e-05 TATCCAAAAA TGCGCCAA TCAAAAACCA chrII:3039692-3039772 6 2.32e-05 AGAAA TGCGCCAA GGCACTAGAT chrII:650449-650529 19 2.32e-05 AAGGTTGATA TGCGCCAA GAGGGGGAAA chrIV:2776894-2776974 14 2.32e-05 CGTCCGCCAA TGCGCCAA TGACTAATTT chrI:12956112-12956192 29 2.32e-05 GCACTAGGAA TGCGCCAA GGCAATAAAG chrIV:2650843-2650923 4 2.32e-05 AAA TGCGCCAA GTATCGTGAA chrX:6505175-6505255 34 3.58e-05 AAACGGAATA TGCGCAAG CAACGCTGTT chrIII:13160778-13160858 27 3.58e-05 aaatatcttt tgcgcaag caaagataac chrX:14435806-14435886 22 3.58e-05 aaatatcttc tgcgcaag caaaggttcg chrIV:1878730-1878810 25 3.58e-05 TCCACCAAAA TGCGCAAG CAAAAACGCG chrX:15707196-15707276 12 3.58e-05 tcacatcttt tgcgcaag caaagatgac chrIII:12316692-12316772 49 3.58e-05 CGTCGCCAAG TGCGCAAG GCACGGAAAG chrI:5291930-5292010 12 6.01e-05 GCACGAGAAT CGCGCCAG CAGGGCGTTG chrV:5275127-5275207 28 6.01e-05 TCACATGAAA CGCGCCAG CAGCCCCTTT chrIV:2349069-2349149 29 6.01e-05 CGTCAAGAAA CGCGCCAG CAGACTTTGC chrII:1402320-1402400 40 6.01e-05 TAACGCAAAA CGCGCCAG CAGCCACCCT chrIII:1037320-1037400 41 6.01e-05 GATCGAGACA CGCGCCAG CAAAATTTCC chrI:12571130-12571210 24 6.01e-05 CGCCGAGGAA TGCGCAAA GGCACGAGAA chrIII:4489074-4489154 39 6.01e-05 GCACGCGAAA CGCGCCAG CAACAATTTT chrX:12453626-12453706 24 6.01e-05 ACACGAAAGA TGCGCAAA TACATTGTTG chrX:13918312-13918392 11 6.01e-05 aatttgattt cgcgccag cacgggaagt chrX:9117688-9117768 24 6.01e-05 aaatatattt tgcgcaaa caaagataac chrX:4588091-4588171 31 7.09e-05 GCACGCAAAA CGCGCCAA CCGTTACTTT chrI:5828232-5828312 67 7.09e-05 GCCCGGCCGG CGCGCCAA TATTCT chrIII:7928694-7928774 35 7.09e-05 TGCTAAGAAA CGCGCCAA CACTGGGTGC chrX:2559560-2559640 11 7.09e-05 AAACAAGAAA CGCGCCAA GAAAACTAAA chrII:3036490-3036570 53 7.09e-05 TCACTAGAAA CGCGCCAA GGCACTGGAA chrI:2914593-2914673 31 8.17e-05 TCACTGGAAA CGCGCAAG CCCCCTTGTT chrV:9382695-9382775 13 8.17e-05 aaacaagttt cgcgcaag cgaaataagt chrV:15392241-15392321 9 8.17e-05 cggtgaaa cgcgcaag caatctccct chrII:6056077-6056157 32 8.17e-05 GAAAAAGAAA CGCGCAAG CCTTTGCGCG chrIII:9433757-9433837 12 8.17e-05 AATCGTCTTC CGCGCAAG CGGAAATGGC chrV:1599259-1599339 3 8.17e-05 aa cgcgcaag caatctccct chrI:6358574-6358654 4 9.49e-05 TAC CGCGCAAA GGAGTTGTGT chrIII:634730-634810 20 9.49e-05 GCACCAGAAA CGCGCAAA GCTTCTCGTT chrV:18178396-18178476 69 1.26e-04 GAACTAGAAT TGCGTCAG GGCA chrIV:8826737-8826817 55 1.26e-04 CAAACGAATG TGCGTCAG CAGAAAATCA chrII:8158152-8158232 5 1.26e-04 AACG TGCGTCAG CAAAGGTAAG chrIII:7712055-7712135 31 1.26e-04 AGCTGACAAC TGCGTCAG CAAAACTGGT chrV:15538081-15538161 18 1.26e-04 TAACGAAAGT TGCGTCAG CTACCACTGC chrV:18388386-18388466 50 1.41e-04 GCATTAGAAT TGCGTCAA GGCGCTAGAA chrX:2639310-2639390 20 1.41e-04 CGTCGCCAAG TGCGTCAA CAAGAGCGCA chrIII:9523735-9523815 9 1.71e-04 TAAGAATT TGCGCACG GAAAGGTGGG chrIV:6664607-6664687 6 1.91e-04 AGTTC CGCGCCCG ACAATGTTTC chrV:13672034-13672114 73 1.91e-04 ATCCACGTAC TGCGCACA chrI:10720348-10720428 43 1.91e-04 ATCGATCCAC TGCGCACA AAAATGTCGG chrI:10718345-10718425 56 1.91e-04 CCACGAGAAA TGCGCACA CTCTCTCGCT chrIII:536466-536546 42 1.91e-04 TTCGGTGCCT TGCGCACA CGGCGATGCG chrII:416954-417034 45 1.91e-04 TTCAGTGCCT TGCGCACA CGGCGACGCG chrIII:10266975-10267055 48 1.91e-04 CCACGAGAAA TGCGCACA CTCTCTCGCT chrV:15769249-15769329 62 2.27e-04 CTGATGCAGT CGCGCCCA ACTGATAAAG chrII:11694598-11694678 48 2.80e-04 GCACGAGAAA CGCGTCAG CCCCTTGGTG chrII:13958505-13958585 54 2.80e-04 GCACGAGAAA CGCGTCAG CAATGGACGT chrV:19031145-19031225 66 3.03e-04 TATCCAGAAT CGCGTCAA GGCACTG chrII:7758567-7758647 38 3.03e-04 AAACTGGAAC GGCGCCAA GGCACAGAGA chrX:5486099-5486179 48 3.03e-04 GCGCACAAAA CGCGTCAA TAGGATGGTT chrIII:4449547-4449627 45 3.24e-04 CGTTATCCAT TGCGCCAC GCGGCCACAG chrIV:15476499-15476579 65 3.24e-04 GGTAACCGAC TGCGCCAC GCATGCAT chrX:12860848-12860928 46 3.44e-04 CTCCCATGTT TGCGCAGA GAGGTCGGTT chrIV:813524-813604 10 3.44e-04 CACGAGAAA TGCGCAGA GAGAGCGCAG chrIII:3695551-3695631 60 3.44e-04 CCACGAGAAA TGCGCAGA GAGAGCGCAG chrV:5047388-5047468 60 3.44e-04 CCACGTGAAA TGCGCAGA GAGAGCGCAG chrI:2996028-2996108 16 4.11e-04 AAAGGGGATC TGCGAAAG GGGAGATACG chrII:7123227-7123307 73 4.74e-04 GTGCGAGGCT TGCGAAAA chrV:8413766-8413846 57 4.74e-04 CACGCTCTAT TGCGAAAA TTCAAGTTTT chrIII:13343548-13343628 40 4.74e-04 GTTGTCGAGG TGCGAAAA TTTTAAGCGC chrIII:3234622-3234702 43 4.74e-04 TTAGTGCCTT GGCGCAAG TTTGGTGTCT chrIV:15042295-15042375 26 4.74e-04 GTGCCAGACT TGCGAAAA AAGTGTGCGG chrI:7087766-7087846 13 5.29e-04 AGCATTGGGG AGCGCCAA CGGTTCAAAA chrV:19821773-19821853 31 5.29e-04 CTAGTGCCTT GGCGCAAA TCTAGTGTCT chrII:3130215-3130295 46 5.29e-04 GCACTAAGAA AGCGCCAA GACCCAGTAA chrII:730102-730182 51 5.70e-04 GCGCATTTCA CGCGCAGG AGGCCGTGGT chrI:6660243-6660323 35 5.70e-04 GCGCATTTCA CGCGCAGG AGGCCGTGTG chrIII:7771160-7771240 20 6.77e-04 GCACGAGTAG TGTGCCAA GCGGCTGCTG chrI:5138071-5138151 39 6.77e-04 TTCCAGGGAG CGCGCGAA ACACATGCAA chrV:9384517-9384597 28 6.77e-04 GAGACCCGCG CGCGCGAA AAGCTCGATG chrV:18573419-18573499 24 6.77e-04 TATCAAGAAT TGTGCCAA GGAAAGTTGT chrI:3788747-3788827 36 7.44e-04 TTCAGACTTC TCCGCAAG GAGCGTGCTG chrIII:3171499-3171579 28 7.69e-04 CGCGGATCAA TCCGCAAA AATGCTGCAA chrIV:8888668-8888748 39 8.68e-04 GTGAAAACAG TGCGACCG TAGTTTATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCMAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4360661-4360741 1e-05 29_[+1]_43 chrII:873556-873636 1e-05 45_[+1]_27 chrV:13664495-13664575 1e-05 43_[+1]_29 chrI:10970246-10970326 1e-05 21_[+1]_51 chrII:3039895-3039975 1e-05 65_[+1]_7 chrV:19371980-19372060 1e-05 37_[+1]_35 chrI:3223011-3223091 1e-05 46_[+1]_26 chrV:19212595-19212675 1e-05 53_[+1]_19 chrX:11662735-11662815 1e-05 29_[+1]_43 chrV:20483638-20483718 1e-05 29_[+1]_43 chrIII:9617090-9617170 1e-05 54_[+1]_18 chrV:19024267-19024347 1e-05 19_[+1]_53 chrIII:3174054-3174134 1e-05 11_[+1]_61 chrX:5059513-5059593 1e-05 50_[+1]_22 chrIII:13341062-13341142 1e-05 11_[+1]_61 chrV:19008090-19008170 1e-05 27_[+1]_45 chrIV:8923529-8923609 1e-05 41_[+1]_31 chrX:34569-34649 1e-05 19_[+1]_53 chrIV:1496115-1496195 2.3e-05 44_[+1]_28 chrV:9513757-9513837 2.3e-05 23_[+1]_49 chrV:19032188-19032268 2.3e-05 3_[+1]_69 chrI:946058-946138 2.3e-05 43_[+1]_29 chrV:19373373-19373453 2.3e-05 31_[+1]_41 chrIV:5541435-5541515 2.3e-05 59_[+1]_13 chrV:19374455-19374535 2.3e-05 33_[+1]_39 chrII:3036691-3036771 2.3e-05 31_[+1]_41 chrIII:5719970-5720050 2.3e-05 63_[+1]_9 chrIV:2651045-2651125 2.3e-05 42_[+1]_30 chrII:3039692-3039772 2.3e-05 5_[+1]_67 chrII:650449-650529 2.3e-05 18_[+1]_54 chrIV:2776894-2776974 2.3e-05 13_[+1]_59 chrI:12956112-12956192 2.3e-05 28_[+1]_44 chrIV:2650843-2650923 2.3e-05 3_[+1]_69 chrX:6505175-6505255 3.6e-05 33_[+1]_39 chrIII:13160778-13160858 3.6e-05 26_[+1]_46 chrX:14435806-14435886 3.6e-05 21_[+1]_51 chrIV:1878730-1878810 3.6e-05 24_[+1]_48 chrX:15707196-15707276 3.6e-05 11_[+1]_61 chrIII:12316692-12316772 3.6e-05 48_[+1]_24 chrI:5291930-5292010 6e-05 11_[+1]_61 chrV:5275127-5275207 6e-05 27_[+1]_45 chrIV:2349069-2349149 6e-05 28_[+1]_44 chrII:1402320-1402400 6e-05 39_[+1]_33 chrIII:1037320-1037400 6e-05 40_[+1]_32 chrI:12571130-12571210 6e-05 23_[+1]_49 chrIII:4489074-4489154 6e-05 38_[+1]_34 chrX:12453626-12453706 6e-05 23_[+1]_49 chrX:13918312-13918392 6e-05 10_[+1]_62 chrX:9117688-9117768 6e-05 23_[+1]_49 chrX:4588091-4588171 7.1e-05 30_[+1]_42 chrI:5828232-5828312 7.1e-05 66_[+1]_6 chrIII:7928694-7928774 7.1e-05 34_[+1]_38 chrX:2559560-2559640 7.1e-05 10_[+1]_62 chrII:3036490-3036570 7.1e-05 52_[+1]_20 chrI:2914593-2914673 8.2e-05 30_[+1]_42 chrV:9382695-9382775 8.2e-05 12_[+1]_60 chrV:15392241-15392321 8.2e-05 8_[+1]_64 chrII:6056077-6056157 8.2e-05 31_[+1]_41 chrIII:9433757-9433837 8.2e-05 11_[+1]_61 chrV:1599259-1599339 8.2e-05 2_[+1]_70 chrI:6358574-6358654 9.5e-05 3_[+1]_69 chrIII:634730-634810 9.5e-05 19_[+1]_53 chrV:18178396-18178476 0.00013 68_[+1]_4 chrIV:8826737-8826817 0.00013 54_[+1]_18 chrII:8158152-8158232 0.00013 4_[+1]_68 chrIII:7712055-7712135 0.00013 30_[+1]_42 chrV:15538081-15538161 0.00013 17_[+1]_55 chrV:18388386-18388466 0.00014 49_[+1]_23 chrX:2639310-2639390 0.00014 19_[+1]_53 chrIII:9523735-9523815 0.00017 8_[+1]_64 chrIV:6664607-6664687 0.00019 5_[+1]_67 chrV:13672034-13672114 0.00019 72_[+1] chrI:10720348-10720428 0.00019 42_[+1]_30 chrI:10718345-10718425 0.00019 55_[+1]_17 chrIII:536466-536546 0.00019 41_[+1]_31 chrII:416954-417034 0.00019 44_[+1]_28 chrIII:10266975-10267055 0.00019 47_[+1]_25 chrV:15769249-15769329 0.00023 61_[+1]_11 chrII:11694598-11694678 0.00028 47_[+1]_25 chrII:13958505-13958585 0.00028 53_[+1]_19 chrV:19031145-19031225 0.0003 65_[+1]_7 chrII:7758567-7758647 0.0003 37_[+1]_35 chrX:5486099-5486179 0.0003 47_[+1]_25 chrIII:4449547-4449627 0.00032 44_[+1]_28 chrIV:15476499-15476579 0.00032 64_[+1]_8 chrX:12860848-12860928 0.00034 45_[+1]_27 chrIV:813524-813604 0.00034 9_[+1]_63 chrIII:3695551-3695631 0.00034 59_[+1]_13 chrV:5047388-5047468 0.00034 59_[+1]_13 chrI:2996028-2996108 0.00041 15_[+1]_57 chrII:7123227-7123307 0.00047 72_[+1] chrV:8413766-8413846 0.00047 56_[+1]_16 chrIII:13343548-13343628 0.00047 39_[+1]_33 chrIII:3234622-3234702 0.00047 42_[+1]_30 chrIV:15042295-15042375 0.00047 25_[+1]_47 chrI:7087766-7087846 0.00053 12_[+1]_60 chrV:19821773-19821853 0.00053 30_[+1]_42 chrII:3130215-3130295 0.00053 45_[+1]_27 chrII:730102-730182 0.00057 50_[+1]_22 chrI:6660243-6660323 0.00057 34_[+1]_38 chrIII:7771160-7771240 0.00068 19_[+1]_53 chrI:5138071-5138151 0.00068 38_[+1]_34 chrV:9384517-9384597 0.00068 27_[+1]_45 chrV:18573419-18573499 0.00068 23_[+1]_49 chrI:3788747-3788827 0.00074 35_[+1]_37 chrIII:3171499-3171579 0.00077 27_[+1]_45 chrIV:8888668-8888748 0.00087 38_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCMAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGCMAR width=8 seqs=107 chrIV:4360661-4360741 ( 30) TGCGCCAG 1 chrII:873556-873636 ( 46) TGCGCCAG 1 chrV:13664495-13664575 ( 44) TGCGCCAG 1 chrI:10970246-10970326 ( 22) TGCGCCAG 1 chrII:3039895-3039975 ( 66) TGCGCCAG 1 chrV:19371980-19372060 ( 38) TGCGCCAG 1 chrI:3223011-3223091 ( 47) TGCGCCAG 1 chrV:19212595-19212675 ( 54) TGCGCCAG 1 chrX:11662735-11662815 ( 30) TGCGCCAG 1 chrV:20483638-20483718 ( 30) TGCGCCAG 1 chrIII:9617090-9617170 ( 55) TGCGCCAG 1 chrV:19024267-19024347 ( 20) TGCGCCAG 1 chrIII:3174054-3174134 ( 12) TGCGCCAG 1 chrX:5059513-5059593 ( 51) TGCGCCAG 1 chrIII:13341062-13341142 ( 12) TGCGCCAG 1 chrV:19008090-19008170 ( 28) TGCGCCAG 1 chrIV:8923529-8923609 ( 42) TGCGCCAG 1 chrX:34569-34649 ( 20) TGCGCCAG 1 chrIV:1496115-1496195 ( 45) TGCGCCAA 1 chrV:9513757-9513837 ( 24) TGCGCCAA 1 chrV:19032188-19032268 ( 4) TGCGCCAA 1 chrI:946058-946138 ( 44) TGCGCCAA 1 chrV:19373373-19373453 ( 32) TGCGCCAA 1 chrIV:5541435-5541515 ( 60) TGCGCCAA 1 chrV:19374455-19374535 ( 34) TGCGCCAA 1 chrII:3036691-3036771 ( 32) TGCGCCAA 1 chrIII:5719970-5720050 ( 64) TGCGCCAA 1 chrIV:2651045-2651125 ( 43) TGCGCCAA 1 chrII:3039692-3039772 ( 6) TGCGCCAA 1 chrII:650449-650529 ( 19) TGCGCCAA 1 chrIV:2776894-2776974 ( 14) TGCGCCAA 1 chrI:12956112-12956192 ( 29) TGCGCCAA 1 chrIV:2650843-2650923 ( 4) TGCGCCAA 1 chrX:6505175-6505255 ( 34) TGCGCAAG 1 chrIII:13160778-13160858 ( 27) TGCGCAAG 1 chrX:14435806-14435886 ( 22) TGCGCAAG 1 chrIV:1878730-1878810 ( 25) TGCGCAAG 1 chrX:15707196-15707276 ( 12) TGCGCAAG 1 chrIII:12316692-12316772 ( 49) TGCGCAAG 1 chrI:5291930-5292010 ( 12) CGCGCCAG 1 chrV:5275127-5275207 ( 28) CGCGCCAG 1 chrIV:2349069-2349149 ( 29) CGCGCCAG 1 chrII:1402320-1402400 ( 40) CGCGCCAG 1 chrIII:1037320-1037400 ( 41) CGCGCCAG 1 chrI:12571130-12571210 ( 24) TGCGCAAA 1 chrIII:4489074-4489154 ( 39) CGCGCCAG 1 chrX:12453626-12453706 ( 24) TGCGCAAA 1 chrX:13918312-13918392 ( 11) CGCGCCAG 1 chrX:9117688-9117768 ( 24) TGCGCAAA 1 chrX:4588091-4588171 ( 31) CGCGCCAA 1 chrI:5828232-5828312 ( 67) CGCGCCAA 1 chrIII:7928694-7928774 ( 35) CGCGCCAA 1 chrX:2559560-2559640 ( 11) CGCGCCAA 1 chrII:3036490-3036570 ( 53) CGCGCCAA 1 chrI:2914593-2914673 ( 31) CGCGCAAG 1 chrV:9382695-9382775 ( 13) CGCGCAAG 1 chrV:15392241-15392321 ( 9) CGCGCAAG 1 chrII:6056077-6056157 ( 32) CGCGCAAG 1 chrIII:9433757-9433837 ( 12) CGCGCAAG 1 chrV:1599259-1599339 ( 3) CGCGCAAG 1 chrI:6358574-6358654 ( 4) CGCGCAAA 1 chrIII:634730-634810 ( 20) CGCGCAAA 1 chrV:18178396-18178476 ( 69) TGCGTCAG 1 chrIV:8826737-8826817 ( 55) TGCGTCAG 1 chrII:8158152-8158232 ( 5) TGCGTCAG 1 chrIII:7712055-7712135 ( 31) TGCGTCAG 1 chrV:15538081-15538161 ( 18) TGCGTCAG 1 chrV:18388386-18388466 ( 50) TGCGTCAA 1 chrX:2639310-2639390 ( 20) TGCGTCAA 1 chrIII:9523735-9523815 ( 9) TGCGCACG 1 chrIV:6664607-6664687 ( 6) CGCGCCCG 1 chrV:13672034-13672114 ( 73) TGCGCACA 1 chrI:10720348-10720428 ( 43) TGCGCACA 1 chrI:10718345-10718425 ( 56) TGCGCACA 1 chrIII:536466-536546 ( 42) TGCGCACA 1 chrII:416954-417034 ( 45) TGCGCACA 1 chrIII:10266975-10267055 ( 48) TGCGCACA 1 chrV:15769249-15769329 ( 62) CGCGCCCA 1 chrII:11694598-11694678 ( 48) CGCGTCAG 1 chrII:13958505-13958585 ( 54) CGCGTCAG 1 chrV:19031145-19031225 ( 66) CGCGTCAA 1 chrII:7758567-7758647 ( 38) GGCGCCAA 1 chrX:5486099-5486179 ( 48) CGCGTCAA 1 chrIII:4449547-4449627 ( 45) TGCGCCAC 1 chrIV:15476499-15476579 ( 65) TGCGCCAC 1 chrX:12860848-12860928 ( 46) TGCGCAGA 1 chrIV:813524-813604 ( 10) TGCGCAGA 1 chrIII:3695551-3695631 ( 60) TGCGCAGA 1 chrV:5047388-5047468 ( 60) TGCGCAGA 1 chrI:2996028-2996108 ( 16) TGCGAAAG 1 chrII:7123227-7123307 ( 73) TGCGAAAA 1 chrV:8413766-8413846 ( 57) TGCGAAAA 1 chrIII:13343548-13343628 ( 40) TGCGAAAA 1 chrIII:3234622-3234702 ( 43) GGCGCAAG 1 chrIV:15042295-15042375 ( 26) TGCGAAAA 1 chrI:7087766-7087846 ( 13) AGCGCCAA 1 chrV:19821773-19821853 ( 31) GGCGCAAA 1 chrII:3130215-3130295 ( 46) AGCGCCAA 1 chrII:730102-730182 ( 51) CGCGCAGG 1 chrI:6660243-6660323 ( 35) CGCGCAGG 1 chrIII:7771160-7771240 ( 20) TGTGCCAA 1 chrI:5138071-5138151 ( 39) CGCGCGAA 1 chrV:9384517-9384597 ( 28) CGCGCGAA 1 chrV:18573419-18573499 ( 24) TGTGCCAA 1 chrI:3788747-3788827 ( 36) TCCGCAAG 1 chrIII:3171499-3171579 ( 28) TCCGCAAA 1 chrIV:8888668-8888748 ( 39) TGCGACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCMAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.96796 E= 2.1e-069 -389 29 -302 133 -1339 -361 211 -1339 -1339 210 -1339 -384 -1339 -1339 214 -1339 -230 188 -1339 -138 40 143 -360 -1339 162 -129 -202 -1339 84 -361 110 -1339 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCMAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 2.1e-069 0.018692 0.280374 0.028037 0.672897 0.000000 0.018692 0.981308 0.000000 0.000000 0.981308 0.000000 0.018692 0.000000 0.000000 1.000000 0.000000 0.056075 0.841121 0.000000 0.102804 0.364486 0.616822 0.018692 0.000000 0.850467 0.093458 0.056075 0.000000 0.495327 0.018692 0.485981 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCMAR MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GCGC[CA]A[AG] -------------------------------------------------------------------------------- Time 10.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GYTGGCGC MEME-2 width = 8 sites = 72 llr = 619 E-value = 7.4e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTGGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:::3::: pos.-specific C 34:::a:9 probability G 6::98:a: matrix T :6a1:::1 bits 2.1 ** 1.9 * ** 1.7 * ** 1.5 ** *** Relative 1.3 ****** Entropy 1.1 ******* (12.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTGGCGC consensus CC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5291930-5292010 26 1.00e-05 CCAGCAGGGC GTTGGCGC GATTCTCGGG chrX:12860848-12860928 61 1.00e-05 AGAGAGGTCG GTTGGCGC GTTTCTCGTT chrII:11676104-11676184 42 1.00e-05 ATGTGTGTGT GTTGGCGC ACTCGCGGTT chrIV:13701643-13701723 24 1.00e-05 ACAATCTCTC GTTGGCGC AGTTGGTAAA chrI:10970246-10970326 37 1.00e-05 CAGCAATTTT GTTGGCGC ACTTCTCGCG chrIII:634730-634810 54 1.00e-05 CTTTCGGTGC GTTGGCGC GTTTCTCGCG chrV:18573419-18573499 40 1.00e-05 AAGGAAAGTT GTTGGCGC AATTCTCGTG chrV:9382695-9382775 29 1.00e-05 agcgaaataa gttggcgc gtttttttgc chrX:12453626-12453706 38 1.00e-05 CAAATACATT GTTGGCGC GTTTTGTGTG chrIII:7771160-7771240 58 1.85e-05 CGTAGCGCCG GCTGGCGC GCTTCGCGTG chrIV:2349069-2349149 45 1.85e-05 AGCAGACTTT GCTGGCGC ATTTCTCGTG chrV:18895143-18895223 45 1.85e-05 TTGGACTTTT GCTGGCGC ACTTTGCGTG chrII:7147722-7147802 68 1.85e-05 CTTGAAAATC GCTGGCGC ATTTC chrI:11497943-11498023 35 1.85e-05 ATTGGAGATT GCTGGCGC ATTTTGCGTG chrIV:5541435-5541515 32 1.85e-05 CAATAGCACT GCTGGCGC ATTTCGAGTG chrI:12571130-12571210 58 1.85e-05 CAATGAAGTT GCTGGCGC ATTTATCGTG chrIII:3174054-3174134 35 1.85e-05 TTGTAAGCTT GCTGGCGC ATTTTTTGAT chrIII:13160778-13160858 59 1.85e-05 gcactctcgt gctggcgc acttctcgat chrII:650449-650529 52 1.85e-05 CAACCTCGAT GCTGGCGC ATAACTTGAT chrV:19008090-19008170 45 1.85e-05 GCAAACTTCT GCTGGCGC ATTTCTCGTG chrIV:2776894-2776974 32 1.85e-05 TGACTAATTT GCTGGCGC GTTTCTCGTG chrX:15707196-15707276 63 1.85e-05 actctctgac gctggcgc gaaagtttta chrIII:9433757-9433837 28 1.85e-05 AGCGGAAATG GCTGGCGC ATCTCTCGTG chrX:9117688-9117768 56 1.85e-05 gcactctcgt gctggcgc acttctcgat chrIV:4360661-4360741 46 2.86e-05 AGCACACTAC CTTGGCGC GTTCCCCGTT chrV:19821773-19821853 47 2.86e-05 AATCTAGTGT CTTGGCGC AATTCTTGTG chrII:3038487-3038567 21 2.86e-05 GTTTTTGTGC CTTGGCGC ATTTCTAGTG chrI:14731721-14731801 68 2.86e-05 CTCTCCGTGA CTTGGCGC ATTCG chrII:1402320-1402400 56 2.86e-05 AGCAGCCACC CTTGGCGC ATTATTTGTT chrIII:1037320-1037400 58 2.86e-05 GCAAAATTTC CTTGGCGC ATTTCTCGAC chrV:18684553-18684633 66 2.86e-05 TTTCTAGTGC CTTGGCGC AATTCTA chrIII:3234622-3234702 59 2.86e-05 AGTTTGGTGT CTTGGCGC AATTCTAGTG chrV:19148483-19148563 34 2.86e-05 ATTCTCGTTT CTTGGCGC ATTTCTGATG chrV:18619533-18619613 33 2.86e-05 TTTCTTGTGC CTTGGCGC AATTCTAGTG chrV:18575391-18575471 5 2.86e-05 GTGC CTTGGCGC AATTCTAGTG chrV:19380180-19380260 66 2.86e-05 ATTCTCGTGC CTTGGCGC CTTTCTC chrII:8158152-8158232 37 4.95e-05 TCAATCACCT GTTGACGC TTACTTTGAT chrV:20483638-20483718 48 4.95e-05 CAAGCCCATT GTTGACGC GTTTCTCGCG chrV:18573624-18573704 63 4.95e-05 ATTCTCGTGC GTTGACGC AATCCTGGTG chrIII:536466-536546 21 4.95e-05 TTGCGATCTT GTTGACGC ACTTTCGGTG chrV:18676447-18676527 52 5.99e-05 ATTCTAGTGC GCTGACGC AATTCTAGTG chrV:12599622-12599702 47 5.99e-05 TATTTTCCGT GCTGACGC GTTTCTCGTG chrX:14435806-14435886 39 5.99e-05 gcaaaggttc gctgacgc acttctcgtg chrV:13664495-13664575 60 7.21e-05 AGTGACGCTT ATTGGCGC ATTTCAAAAT chrI:6660243-6660323 21 7.21e-05 TCTTCGTGCG ATTGGCGC ATTTCACGCG chrV:18389989-18390069 28 9.48e-05 ATTCACGTGC CTTGACGC AATTCTAGTG chrV:19821436-19821516 61 9.48e-05 TTTCTAGTGC CTTGACGC AGTTCTAGTG chrI:6466000-6466080 51 9.48e-05 AGACGCTGAC ACTGGCGC TCGTTTGGAT chrI:12954715-12954795 54 9.48e-05 CTTCTAGTGC CTTGACGC AATTCCAGTG chrIV:6664397-6664477 23 9.48e-05 GAGGCAGCTT ACTGGCGC ATTTCGCGTG chrIII:7795454-7795534 43 9.48e-05 TGAAACACTT ACTGGCGC ATTTCTAGTG chrV:18619334-18619414 23 9.48e-05 ATTCTAGTGC CTTGACGC AATTCTTGTG chrII:416954-417034 24 9.48e-05 TTGCGATCTT CTTGACGC ACTTTCAGTG chrX:34569-34649 36 9.48e-05 AGCAAAGTCT ACTGGCGC GTTTCTTGAT chrIII:10266975-10267055 70 1.17e-04 CTCGCTTTTT GTTTGCGC GTT chrII:730102-730182 37 1.39e-04 AGAGCGACTT GCTTGCGC ATTTCACGCG chrX:6505175-6505255 49 1.39e-04 AAGCAACGCT GTTGGCGT ACATGACATT chrIII:9617090-9617170 71 1.39e-04 AGCAACTTCC GCTTGCGC GG chrI:8574391-8574471 71 1.39e-04 TCTTCGTGTA GTTGGCGT AA chrX:13918312-13918392 44 1.39e-04 agctatcttt gcttgcgc agaaaatatt chrV:15538081-15538161 54 1.39e-04 TTCTCGTGTT GCTTGCGC TTTTCTCGAT chrIV:1496115-1496195 29 1.49e-04 GCAAACGATA GCTGGCGT GTTTCTCGTG chrV:5275127-5275207 42 1.61e-04 CCAGCAGCCC CTTTGCGC ACAACGAGTG chrX:4588091-4588171 45 1.61e-04 CCAACCGTTA CTTTGCGC ACTTGTTGAC chrII:6056077-6056157 41 1.61e-04 ACGCGCAAGC CTTTGCGC GTTTCTCGTT chrIII:5719970-5720050 18 2.21e-04 AAATTGCTTC ACTGACGC ACTTTTCGAT chrX:5298292-5298372 62 2.62e-04 GTAACCGCGC GTTGACGT CATTTGTGTA chrV:15065546-15065626 49 2.62e-04 TTTGTGGAGA GTTGACGT GTTTTGCGTG chrX:5486099-5486179 63 2.62e-04 CAATAGGATG GTTGACGT CTTTTCCGTG chrV:9513757-9513837 40 2.74e-04 AACAGAGATT GCTGACGT ACTTTTCGTG chrI:5138071-5138151 19 2.74e-04 CATTATCGTT GCTGACGT TTTTCCAGGG chrX:2559560-2559640 43 3.29e-04 GGTCAGTAAC ACTTGCGC GTCGGCAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5291930-5292010 1e-05 25_[+2]_47 chrX:12860848-12860928 1e-05 60_[+2]_12 chrII:11676104-11676184 1e-05 41_[+2]_31 chrIV:13701643-13701723 1e-05 23_[+2]_49 chrI:10970246-10970326 1e-05 36_[+2]_36 chrIII:634730-634810 1e-05 53_[+2]_19 chrV:18573419-18573499 1e-05 39_[+2]_33 chrV:9382695-9382775 1e-05 28_[+2]_44 chrX:12453626-12453706 1e-05 37_[+2]_35 chrIII:7771160-7771240 1.9e-05 57_[+2]_15 chrIV:2349069-2349149 1.9e-05 44_[+2]_28 chrV:18895143-18895223 1.9e-05 44_[+2]_28 chrII:7147722-7147802 1.9e-05 67_[+2]_5 chrI:11497943-11498023 1.9e-05 34_[+2]_38 chrIV:5541435-5541515 1.9e-05 31_[+2]_41 chrI:12571130-12571210 1.9e-05 57_[+2]_15 chrIII:3174054-3174134 1.9e-05 34_[+2]_38 chrIII:13160778-13160858 1.9e-05 58_[+2]_14 chrII:650449-650529 1.9e-05 51_[+2]_21 chrV:19008090-19008170 1.9e-05 44_[+2]_28 chrIV:2776894-2776974 1.9e-05 31_[+2]_41 chrX:15707196-15707276 1.9e-05 62_[+2]_10 chrIII:9433757-9433837 1.9e-05 27_[+2]_45 chrX:9117688-9117768 1.9e-05 55_[+2]_17 chrIV:4360661-4360741 2.9e-05 45_[+2]_27 chrV:19821773-19821853 2.9e-05 46_[+2]_26 chrII:3038487-3038567 2.9e-05 20_[+2]_52 chrI:14731721-14731801 2.9e-05 67_[+2]_5 chrII:1402320-1402400 2.9e-05 55_[+2]_17 chrIII:1037320-1037400 2.9e-05 57_[+2]_15 chrV:18684553-18684633 2.9e-05 65_[+2]_7 chrIII:3234622-3234702 2.9e-05 58_[+2]_14 chrV:19148483-19148563 2.9e-05 33_[+2]_39 chrV:18619533-18619613 2.9e-05 32_[+2]_40 chrV:18575391-18575471 2.9e-05 4_[+2]_68 chrV:19380180-19380260 2.9e-05 65_[+2]_7 chrII:8158152-8158232 4.9e-05 36_[+2]_36 chrV:20483638-20483718 4.9e-05 47_[+2]_25 chrV:18573624-18573704 4.9e-05 62_[+2]_10 chrIII:536466-536546 4.9e-05 20_[+2]_52 chrV:18676447-18676527 6e-05 51_[+2]_21 chrV:12599622-12599702 6e-05 46_[+2]_26 chrX:14435806-14435886 6e-05 38_[+2]_34 chrV:13664495-13664575 7.2e-05 59_[+2]_13 chrI:6660243-6660323 7.2e-05 20_[+2]_52 chrV:18389989-18390069 9.5e-05 27_[+2]_45 chrV:19821436-19821516 9.5e-05 60_[+2]_12 chrI:6466000-6466080 9.5e-05 50_[+2]_22 chrI:12954715-12954795 9.5e-05 53_[+2]_19 chrIV:6664397-6664477 9.5e-05 22_[+2]_50 chrIII:7795454-7795534 9.5e-05 42_[+2]_30 chrV:18619334-18619414 9.5e-05 22_[+2]_50 chrII:416954-417034 9.5e-05 23_[+2]_49 chrX:34569-34649 9.5e-05 35_[+2]_37 chrIII:10266975-10267055 0.00012 69_[+2]_3 chrII:730102-730182 0.00014 36_[+2]_36 chrX:6505175-6505255 0.00014 48_[+2]_24 chrIII:9617090-9617170 0.00014 70_[+2]_2 chrI:8574391-8574471 0.00014 70_[+2]_2 chrX:13918312-13918392 0.00014 43_[+2]_29 chrV:15538081-15538161 0.00014 53_[+2]_19 chrIV:1496115-1496195 0.00015 28_[+2]_44 chrV:5275127-5275207 0.00016 41_[+2]_31 chrX:4588091-4588171 0.00016 44_[+2]_28 chrII:6056077-6056157 0.00016 40_[+2]_32 chrIII:5719970-5720050 0.00022 17_[+2]_55 chrX:5298292-5298372 0.00026 61_[+2]_11 chrV:15065546-15065626 0.00026 48_[+2]_24 chrX:5486099-5486179 0.00026 62_[+2]_10 chrV:9513757-9513837 0.00027 39_[+2]_33 chrI:5138071-5138151 0.00027 18_[+2]_54 chrX:2559560-2559640 0.00033 42_[+2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTGGCGC width=8 seqs=72 chrI:5291930-5292010 ( 26) GTTGGCGC 1 chrX:12860848-12860928 ( 61) GTTGGCGC 1 chrII:11676104-11676184 ( 42) GTTGGCGC 1 chrIV:13701643-13701723 ( 24) GTTGGCGC 1 chrI:10970246-10970326 ( 37) GTTGGCGC 1 chrIII:634730-634810 ( 54) GTTGGCGC 1 chrV:18573419-18573499 ( 40) GTTGGCGC 1 chrV:9382695-9382775 ( 29) GTTGGCGC 1 chrX:12453626-12453706 ( 38) GTTGGCGC 1 chrIII:7771160-7771240 ( 58) GCTGGCGC 1 chrIV:2349069-2349149 ( 45) GCTGGCGC 1 chrV:18895143-18895223 ( 45) GCTGGCGC 1 chrII:7147722-7147802 ( 68) GCTGGCGC 1 chrI:11497943-11498023 ( 35) GCTGGCGC 1 chrIV:5541435-5541515 ( 32) GCTGGCGC 1 chrI:12571130-12571210 ( 58) GCTGGCGC 1 chrIII:3174054-3174134 ( 35) GCTGGCGC 1 chrIII:13160778-13160858 ( 59) GCTGGCGC 1 chrII:650449-650529 ( 52) GCTGGCGC 1 chrV:19008090-19008170 ( 45) GCTGGCGC 1 chrIV:2776894-2776974 ( 32) GCTGGCGC 1 chrX:15707196-15707276 ( 63) GCTGGCGC 1 chrIII:9433757-9433837 ( 28) GCTGGCGC 1 chrX:9117688-9117768 ( 56) GCTGGCGC 1 chrIV:4360661-4360741 ( 46) CTTGGCGC 1 chrV:19821773-19821853 ( 47) CTTGGCGC 1 chrII:3038487-3038567 ( 21) CTTGGCGC 1 chrI:14731721-14731801 ( 68) CTTGGCGC 1 chrII:1402320-1402400 ( 56) CTTGGCGC 1 chrIII:1037320-1037400 ( 58) CTTGGCGC 1 chrV:18684553-18684633 ( 66) CTTGGCGC 1 chrIII:3234622-3234702 ( 59) CTTGGCGC 1 chrV:19148483-19148563 ( 34) CTTGGCGC 1 chrV:18619533-18619613 ( 33) CTTGGCGC 1 chrV:18575391-18575471 ( 5) CTTGGCGC 1 chrV:19380180-19380260 ( 66) CTTGGCGC 1 chrII:8158152-8158232 ( 37) GTTGACGC 1 chrV:20483638-20483718 ( 48) GTTGACGC 1 chrV:18573624-18573704 ( 63) GTTGACGC 1 chrIII:536466-536546 ( 21) GTTGACGC 1 chrV:18676447-18676527 ( 52) GCTGACGC 1 chrV:12599622-12599702 ( 47) GCTGACGC 1 chrX:14435806-14435886 ( 39) GCTGACGC 1 chrV:13664495-13664575 ( 60) ATTGGCGC 1 chrI:6660243-6660323 ( 21) ATTGGCGC 1 chrV:18389989-18390069 ( 28) CTTGACGC 1 chrV:19821436-19821516 ( 61) CTTGACGC 1 chrI:6466000-6466080 ( 51) ACTGGCGC 1 chrI:12954715-12954795 ( 54) CTTGACGC 1 chrIV:6664397-6664477 ( 23) ACTGGCGC 1 chrIII:7795454-7795534 ( 43) ACTGGCGC 1 chrV:18619334-18619414 ( 23) CTTGACGC 1 chrII:416954-417034 ( 24) CTTGACGC 1 chrX:34569-34649 ( 36) ACTGGCGC 1 chrIII:10266975-10267055 ( 70) GTTTGCGC 1 chrII:730102-730182 ( 37) GCTTGCGC 1 chrX:6505175-6505255 ( 49) GTTGGCGT 1 chrIII:9617090-9617170 ( 71) GCTTGCGC 1 chrI:8574391-8574471 ( 71) GTTGGCGT 1 chrX:13918312-13918392 ( 44) GCTTGCGC 1 chrV:15538081-15538161 ( 54) GCTTGCGC 1 chrIV:1496115-1496195 ( 29) GCTGGCGT 1 chrV:5275127-5275207 ( 42) CTTTGCGC 1 chrX:4588091-4588171 ( 45) CTTTGCGC 1 chrII:6056077-6056157 ( 41) CTTTGCGC 1 chrIII:5719970-5720050 ( 18) ACTGACGC 1 chrX:5298292-5298372 ( 62) GTTGACGT 1 chrV:15065546-15065626 ( 49) GTTGACGT 1 chrX:5486099-5486179 ( 63) GTTGACGT 1 chrV:9513757-9513837 ( 40) GCTGACGT 1 chrI:5138071-5138151 ( 19) GCTGACGT 1 chrX:2559560-2559640 ( 43) ACTTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 7.4e-052 -132 28 143 -1281 -1281 91 -1281 109 -1281 -1281 -1281 190 -1281 -1281 195 -110 -15 -1281 172 -1281 -1281 213 -1281 -1281 -1281 -1281 214 -1281 -1281 196 -1281 -127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 7.4e-052 0.111111 0.277778 0.611111 0.000000 0.000000 0.430556 0.000000 0.569444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGGCGC MEME-2 regular expression -------------------------------------------------------------------------------- [GC][TC]TG[GA]CGC -------------------------------------------------------------------------------- Time 14.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCTCGTG MEME-3 width = 8 sites = 48 llr = 422 E-value = 6.3e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCTCGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C ::8:7:1: probability G :::1:a:a matrix T aa29::8: bits 2.1 * 1.9 ** * * 1.7 ** * * 1.5 ** * * Relative 1.3 **** * * Entropy 1.1 ******** (12.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTCGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:9513757-9513837 68 1.39e-05 CATGACGCGT TTCTCGTG TTTCA chrII:3038487-3038567 69 1.39e-05 CTTGGCGCAT TTCTCGTG GCTT chrIV:2349069-2349149 55 1.39e-05 GCTGGCGCAT TTCTCGTG CGTTGACGCG chrV:18573419-18573499 69 1.39e-05 CTTGACGCAA TTCTCGTG CTTT chrIII:3697369-3697449 11 1.39e-05 GTGTGCGCAT TTCTCGTG GTGGAGGCCG chrV:18573624-18573704 54 1.39e-05 CTTGACGCAA TTCTCGTG CGTTGACGCA chrV:12599622-12599702 57 1.39e-05 GCTGACGCGT TTCTCGTG TGGAAAACCA chrX:14435806-14435886 49 1.39e-05 gctgacgcac ttctcgtg ttgcgggcgc chrV:19380180-19380260 57 1.39e-05 ATTAACGAAA TTCTCGTG CCTTGGCGCC chrV:19008090-19008170 55 1.39e-05 GCTGGCGCAT TTCTCGTG CATCGCCAGA chrIV:2776894-2776974 42 1.39e-05 GCTGGCGCGT TTCTCGTG CTTTGCGCGT chrX:15707196-15707276 38 1.39e-05 actgacgcac ttctcgtg ctggcgcact chrV:15538081-15538161 44 1.39e-05 GCTAGCGCGT TTCTCGTG TTGCTTGCGC chrV:19821773-19821853 19 3.08e-05 ATTGGCGCGA TTCTAGTG CCTTGGCGCA chrV:18676447-18676527 24 3.08e-05 GCTGACGCAA TTCTAGTG CCTTGACGCA chrV:18389989-18390069 38 3.08e-05 CTTGACGCAA TTCTAGTG GCTTGACGCA chrV:19821436-19821516 33 3.08e-05 CTTGTCGCAT TTCTAGTG CCTTGTCGCA chrV:18684553-18684633 38 3.08e-05 CTTGACGCAA TTCTAGTG CCTTGGCGCT chrIII:3234622-3234702 69 3.08e-05 CTTGGCGCAA TTCTAGTG CCTT chrI:12954715-12954795 26 3.08e-05 TTGGGGCATT TTCTAGTG CCTTGACGAA chrI:12571341-12571421 21 3.08e-05 CTTAACGCAC TTCTAGTG TTTTGGCGCA chrIII:13341274-13341354 52 3.08e-05 AACTCAATTT TTCTAGTG ATATTTGTCA chrV:18619533-18619613 43 3.08e-05 CTTGGCGCAA TTCTAGTG CCTTGACGCA chrV:18575391-18575471 15 3.08e-05 CTTGGCGCAA TTCTAGTG CCTTGACGCA chrIII:7795454-7795534 53 3.08e-05 ACTGGCGCAT TTCTAGTG CTGGCACACT chrV:18619334-18619414 52 3.08e-05 CTTTACGCAT TTCTAGTG TCTTGACGCA chrI:10970246-10970326 47 4.27e-05 GTTGGCGCAC TTCTCGCG CATGCTGGCG chrIII:634730-634810 64 4.27e-05 GTTGGCGCGT TTCTCGCG CGAAATATT chrV:20483638-20483718 58 4.27e-05 GTTGACGCGT TTCTCGCG CAGGTTGGTC chrIII:3695551-3695631 9 4.27e-05 TTTTTTTC TTCTCGCG GCCATTCCTA chrIII:7771160-7771240 68 7.08e-05 GCTGGCGCGC TTCGCGTG CGATG chrV:5275127-5275207 10 7.08e-05 CCTGCGCAT TTCGCGTG TCACATGAAA chrII:7758567-7758647 6 7.08e-05 AGCTG TTTTCGTG GTATAGAGGA chrV:19148483-19148563 6 7.08e-05 CGCAT TTTTCGTG CCTTGGCGCA chrIV:6664397-6664477 33 7.08e-05 ACTGGCGCAT TTCGCGTG TTTGCTTGCG chrX:5486099-5486179 27 7.08e-05 TTCATGCAAT TTTTCGTG TGCGCGCACA chrIV:5541435-5541515 42 1.19e-04 GCTGGCGCAT TTCGAGTG TCACTCGATC chrI:5291930-5292010 36 1.31e-04 GTTGGCGCGA TTCTCGGG TGCCTGGACA chrIII:7773324-7773404 35 1.31e-04 aaaagacgca ttctcggg gatttgtgtt chrII:8158152-8158232 54 1.55e-04 CTTACTTTGA TTTTCGCG GGACCTGCGA chrIII:2711683-2711763 21 1.55e-04 TTGAACCATG TTTTCGCG GCCGAATGGT chrIII:9617090-9617170 1 1.55e-04 . TTTTCGCG CTTCCGCGCG chrV:18895143-18895223 55 1.69e-04 GCTGGCGCAC TTTGCGTG CTTGGCGCAT chrI:11497943-11498023 45 1.69e-04 GCTGGCGCAT TTTGCGTG CTGGTGTATT chrV:15065546-15065626 59 1.69e-04 GTTGACGTGT TTTGCGTG CACCGGTACA chrX:12860848-12860928 71 1.85e-04 GTTGGCGCGT TTCTCGTT CC chrII:6056077-6056157 51 1.85e-04 CTTTGCGCGT TTCTCGTT CTGCGCGTTT chrI:12956980-12957060 11 2.02e-04 CATGAGTCAT TTCTTGTG GGCTACCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:9513757-9513837 1.4e-05 67_[+3]_5 chrII:3038487-3038567 1.4e-05 68_[+3]_4 chrIV:2349069-2349149 1.4e-05 54_[+3]_18 chrV:18573419-18573499 1.4e-05 68_[+3]_4 chrIII:3697369-3697449 1.4e-05 10_[+3]_62 chrV:18573624-18573704 1.4e-05 53_[+3]_19 chrV:12599622-12599702 1.4e-05 56_[+3]_16 chrX:14435806-14435886 1.4e-05 48_[+3]_24 chrV:19380180-19380260 1.4e-05 56_[+3]_16 chrV:19008090-19008170 1.4e-05 54_[+3]_18 chrIV:2776894-2776974 1.4e-05 41_[+3]_31 chrX:15707196-15707276 1.4e-05 37_[+3]_35 chrV:15538081-15538161 1.4e-05 43_[+3]_29 chrV:19821773-19821853 3.1e-05 18_[+3]_54 chrV:18676447-18676527 3.1e-05 23_[+3]_49 chrV:18389989-18390069 3.1e-05 37_[+3]_35 chrV:19821436-19821516 3.1e-05 32_[+3]_40 chrV:18684553-18684633 3.1e-05 37_[+3]_35 chrIII:3234622-3234702 3.1e-05 68_[+3]_4 chrI:12954715-12954795 3.1e-05 25_[+3]_47 chrI:12571341-12571421 3.1e-05 20_[+3]_52 chrIII:13341274-13341354 3.1e-05 51_[+3]_21 chrV:18619533-18619613 3.1e-05 42_[+3]_30 chrV:18575391-18575471 3.1e-05 14_[+3]_58 chrIII:7795454-7795534 3.1e-05 52_[+3]_20 chrV:18619334-18619414 3.1e-05 51_[+3]_21 chrI:10970246-10970326 4.3e-05 46_[+3]_26 chrIII:634730-634810 4.3e-05 63_[+3]_9 chrV:20483638-20483718 4.3e-05 57_[+3]_15 chrIII:3695551-3695631 4.3e-05 8_[+3]_64 chrIII:7771160-7771240 7.1e-05 67_[+3]_5 chrV:5275127-5275207 7.1e-05 9_[+3]_63 chrII:7758567-7758647 7.1e-05 5_[+3]_67 chrV:19148483-19148563 7.1e-05 5_[+3]_67 chrIV:6664397-6664477 7.1e-05 32_[+3]_40 chrX:5486099-5486179 7.1e-05 26_[+3]_46 chrIV:5541435-5541515 0.00012 41_[+3]_31 chrI:5291930-5292010 0.00013 35_[+3]_37 chrIII:7773324-7773404 0.00013 34_[+3]_38 chrII:8158152-8158232 0.00016 53_[+3]_19 chrIII:2711683-2711763 0.00016 20_[+3]_52 chrIII:9617090-9617170 0.00016 [+3]_72 chrV:18895143-18895223 0.00017 54_[+3]_18 chrI:11497943-11498023 0.00017 44_[+3]_28 chrV:15065546-15065626 0.00017 58_[+3]_14 chrX:12860848-12860928 0.00019 70_[+3]_2 chrII:6056077-6056157 0.00019 50_[+3]_22 chrI:12956980-12957060 0.0002 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCTCGTG width=8 seqs=48 chrV:9513757-9513837 ( 68) TTCTCGTG 1 chrII:3038487-3038567 ( 69) TTCTCGTG 1 chrIV:2349069-2349149 ( 55) TTCTCGTG 1 chrV:18573419-18573499 ( 69) TTCTCGTG 1 chrIII:3697369-3697449 ( 11) TTCTCGTG 1 chrV:18573624-18573704 ( 54) TTCTCGTG 1 chrV:12599622-12599702 ( 57) TTCTCGTG 1 chrX:14435806-14435886 ( 49) TTCTCGTG 1 chrV:19380180-19380260 ( 57) TTCTCGTG 1 chrV:19008090-19008170 ( 55) TTCTCGTG 1 chrIV:2776894-2776974 ( 42) TTCTCGTG 1 chrX:15707196-15707276 ( 38) TTCTCGTG 1 chrV:15538081-15538161 ( 44) TTCTCGTG 1 chrV:19821773-19821853 ( 19) TTCTAGTG 1 chrV:18676447-18676527 ( 24) TTCTAGTG 1 chrV:18389989-18390069 ( 38) TTCTAGTG 1 chrV:19821436-19821516 ( 33) TTCTAGTG 1 chrV:18684553-18684633 ( 38) TTCTAGTG 1 chrIII:3234622-3234702 ( 69) TTCTAGTG 1 chrI:12954715-12954795 ( 26) TTCTAGTG 1 chrI:12571341-12571421 ( 21) TTCTAGTG 1 chrIII:13341274-13341354 ( 52) TTCTAGTG 1 chrV:18619533-18619613 ( 43) TTCTAGTG 1 chrV:18575391-18575471 ( 15) TTCTAGTG 1 chrIII:7795454-7795534 ( 53) TTCTAGTG 1 chrV:18619334-18619414 ( 52) TTCTAGTG 1 chrI:10970246-10970326 ( 47) TTCTCGCG 1 chrIII:634730-634810 ( 64) TTCTCGCG 1 chrV:20483638-20483718 ( 58) TTCTCGCG 1 chrIII:3695551-3695631 ( 9) TTCTCGCG 1 chrIII:7771160-7771240 ( 68) TTCGCGTG 1 chrV:5275127-5275207 ( 10) TTCGCGTG 1 chrII:7758567-7758647 ( 6) TTTTCGTG 1 chrV:19148483-19148563 ( 6) TTTTCGTG 1 chrIV:6664397-6664477 ( 33) TTCGCGTG 1 chrX:5486099-5486179 ( 27) TTTTCGTG 1 chrIV:5541435-5541515 ( 42) TTCGAGTG 1 chrI:5291930-5292010 ( 36) TTCTCGGG 1 chrIII:7773324-7773404 ( 35) TTCTCGGG 1 chrII:8158152-8158232 ( 54) TTTTCGCG 1 chrIII:2711683-2711763 ( 21) TTTTCGCG 1 chrIII:9617090-9617170 ( 1) TTTTCGCG 1 chrV:18895143-18895223 ( 55) TTTGCGTG 1 chrI:11497943-11498023 ( 45) TTTGCGTG 1 chrV:15065546-15065626 ( 59) TTTGCGTG 1 chrX:12860848-12860928 ( 71) TTCTCGTT 1 chrII:6056077-6056157 ( 51) TTCTCGTT 1 chrI:12956980-12957060 ( 11) TTCTTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 6.3e-025 -1223 -1223 -1223 190 -1223 -1223 -1223 190 -1223 183 -1223 -51 -1223 -1223 -64 167 8 159 -1223 -368 -1223 -1223 214 -1223 -1223 -65 -244 160 -1223 -1223 208 -268 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 6.3e-025 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.812500 0.000000 0.187500 0.000000 0.000000 0.145833 0.854167 0.291667 0.687500 0.000000 0.020833 0.000000 0.000000 1.000000 0.000000 0.000000 0.145833 0.041667 0.812500 0.000000 0.000000 0.958333 0.041667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCGTG MEME-3 regular expression -------------------------------------------------------------------------------- TTCT[CA]GTG -------------------------------------------------------------------------------- Time 17.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CACGARAA MEME-4 width = 8 sites = 61 llr = 486 E-value = 1.0e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACGARAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:174a9 pos.-specific C a:a21::: probability G :::526:1 matrix T :::2:::: bits 2.1 * * 1.9 *** * 1.7 *** * 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** *** (11.5 bits) 0.9 *** *** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACGAGAA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGARAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1496115-1496195 3 1.59e-05 AA CACGAGAA ACGCGCCAGC chrIV:4360661-4360741 21 1.59e-05 TGCGCAAAGG CACGAGAA ATGCGCCAGC chrI:5291930-5292010 3 1.59e-05 TG CACGAGAA TCGCGCCAGC chrIV:813524-813604 1 1.59e-05 . CACGAGAA ATGCGCAGAG chrI:14731721-14731801 39 1.59e-05 GTGCAAGGGT CACGAGAA AATCGTCAGC chrII:11694598-11694678 39 1.59e-05 TTTAGCGGCG CACGAGAA ACGCGTCAGC chrI:4587538-4587618 70 1.59e-05 GCACGCGATG CACGAGAA GTG chrV:19373373-19373453 4 1.59e-05 AGG CACGAGAA TTGCGCCAAG chrV:19212595-19212675 45 1.59e-05 AGCGTCAAGG CACGAGAA GTGCGCCAGG chrI:12571130-12571210 34 1.59e-05 TGCGCAAAGG CACGAGAA AAGCGCCAAT chrIII:3695551-3695631 51 1.59e-05 CGGCCTCCAC CACGAGAA ATGCGCAGAG chrIII:7795454-7795534 16 1.59e-05 AGAAAAGGTT CACGAGAA AAATGCCACT chrI:10718345-10718425 47 1.59e-05 CGGCCTCCAC CACGAGAA ATGCGCACAC chrII:13958505-13958585 45 1.59e-05 GCAAAGTACG CACGAGAA ACGCGTCAGC chrII:3036490-3036570 6 1.59e-05 CAAGG CACGAGAA ACGCGCCAAG chrIII:10266975-10267055 39 1.59e-05 CGGCCTCCAC CACGAGAA ATGCGCACAC chrX:34569-34649 11 1.59e-05 CGCGCCAACG CACGAGAA ATGCGCCAGC chrV:13672034-13672114 53 3.53e-05 TAGAAGTGAA CACGAAAA CAATCCACGT chrII:3130215-3130295 18 3.53e-05 CGCGCCTGTG CACGAAAA GTACGTCAAT chrX:13918312-13918392 19 4.84e-05 ttcgcgccag cacgggaa gtgcgtcagc chrV:18178396-18178476 22 8.32e-05 CGCGTCAAGG CACTAGAA CGGCGCCAGG chrV:19371980-19372060 10 8.32e-05 GCGTCAAGG CACTAGAA ATGCGTCAAG chrIII:634730-634810 11 8.32e-05 GAATTTTCTG CACCAGAA ACGCGCAAAG chrI:12956980-12957060 56 8.32e-05 ATTAATAATT CACCAGAA TTGAGGATTT chrV:19024267-19024347 11 8.32e-05 TGCGCCAAGG CACCAGAA ATGCGCCAGT chrV:19374455-19374535 6 8.32e-05 CAAGG CACTAGAA TTGCGCCAAG chrII:3039692-3039772 54 8.32e-05 AGCGCCAAGG CACTAGAA ATGCGCCAAG chrI:12956112-12956192 58 8.32e-05 TGCGCCAAGG CACTAGAA ATGCGTCAAG chrIII:12316692-12316772 58 9.91e-05 GTGCGCAAGG CACGGAAA GTGCGTCAAC chrV:18388386-18388466 22 1.42e-04 TACGTCAATG CACTAAAA TCGCGTCAAG chrV:8495241-8495321 21 1.42e-04 ATGACAAGTA CACCAAAA AACTGTTTGG chrIII:4695335-4695415 52 1.42e-04 AACACACGCC CACCAAAA ATAGATGAAT chrV:19008090-19008170 19 1.42e-04 TCTCGTCCAT CACCAAAA GTGCGCCAGC chrIV:1878730-1878810 17 1.42e-04 CGGAGAAATC CACCAAAA TGCGCAAGCA chrIII:4489074-4489154 30 1.55e-04 ATCGCGCAAG CACGCGAA ACGCGCCAGC chrIII:6171398-6171478 18 1.55e-04 TAACCGACGA CACGCGAA ACAGGCGGAT chrV:20483638-20483718 21 2.16e-04 AACCTATCTG CACTGGAA ATGCGCCAGC chrIII:9617090-9617170 46 2.16e-04 GTGCAAGTAA CACGAGAG ATGCGCCAGC chrI:2914593-2914673 22 2.16e-04 TTCCCACGCT CACTGGAA ACGCGCAAGC chrX:5059513-5059593 59 2.16e-04 agtgcgccag cacgagag tgcgtcagcc chrIII:13341062-13341142 3 2.16e-04 AG CACGAGAG TTGCGCCAGT chrX:4588091-4588171 22 2.32e-04 CTGCGCACAG CACGCAAA ACGCGCCAAC chrIII:7928694-7928774 57 2.32e-04 GGGTGCTTGA CACGCAAA ATTGTGGGAA chrII:3036691-3036771 42 2.32e-04 TGCGCCAAGG CACGCAAA AGGCGCCAAG chrI:5290815-5290895 24 2.55e-04 CTGTATACAG CACAAAAA CGGAGTGAGA chrI:7707399-7707479 30 2.55e-04 AAGGAGtttg cacaaaaa tatgctgcct chrI:5828232-5828312 33 2.55e-04 CCCCGCTTCG CACAAAAA ACGTGTCAGT chrX:11662735-11662815 21 2.55e-04 ATCATAACTG CACAAAAA GTGCGCCAGT chrI:5158138-5158218 51 2.55e-04 ATTTTAAACC CACAAAAA CCGAAGGAAA chrIV:3338496-3338576 47 3.06e-04 AGGTGTTGAT CACTGAAA TAGGTACaag chrII:873556-873636 37 3.06e-04 CACGCCAGTG CACCGAAA GTGCGCCAGC chrV:19079275-19079355 4 3.06e-04 GCG CACTGAAA ATGCGCTATA chrI:3223011-3223091 60 3.06e-04 GCCAGCAATG CACCGAAA ATGCGCCAAG chrX:14137688-14137768 8 3.06e-04 CGCAAGG CACCGAAA GTGAGTCAAC chrIV:8923750-8923830 44 3.06e-04 AACAAGGTGA CACTGAAA AAATGACGGA chrIV:15473688-15473768 39 3.06e-04 TCAAATTGAC CACTGAAA TGCTGCGTTT chrV:20486029-20486109 66 3.06e-04 TCCCGAACTG CACCGAAA GTGCGTC chrX:12453626-12453706 15 3.06e-04 ACCATCACAA CACGAAAG ATGCGCAAAT chrIV:8888668-8888748 26 3.22e-04 TTAAATCGCA CACGTGAA AACAGTGCGA chrV:5047388-5047468 51 3.22e-04 CGGCCTCCAC CACGTGAA ATGCGCAGAG chrIV:6664397-6664477 8 4.06e-04 GAAACCT CACTAGAG GCAGCTTACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGARAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1496115-1496195 1.6e-05 2_[+4]_70 chrIV:4360661-4360741 1.6e-05 20_[+4]_52 chrI:5291930-5292010 1.6e-05 2_[+4]_70 chrIV:813524-813604 1.6e-05 [+4]_72 chrI:14731721-14731801 1.6e-05 38_[+4]_34 chrII:11694598-11694678 1.6e-05 38_[+4]_34 chrI:4587538-4587618 1.6e-05 69_[+4]_3 chrV:19373373-19373453 1.6e-05 3_[+4]_69 chrV:19212595-19212675 1.6e-05 44_[+4]_28 chrI:12571130-12571210 1.6e-05 33_[+4]_39 chrIII:3695551-3695631 1.6e-05 50_[+4]_22 chrIII:7795454-7795534 1.6e-05 15_[+4]_57 chrI:10718345-10718425 1.6e-05 46_[+4]_26 chrII:13958505-13958585 1.6e-05 44_[+4]_28 chrII:3036490-3036570 1.6e-05 5_[+4]_67 chrIII:10266975-10267055 1.6e-05 38_[+4]_34 chrX:34569-34649 1.6e-05 10_[+4]_62 chrV:13672034-13672114 3.5e-05 52_[+4]_20 chrII:3130215-3130295 3.5e-05 17_[+4]_55 chrX:13918312-13918392 4.8e-05 18_[+4]_54 chrV:18178396-18178476 8.3e-05 21_[+4]_51 chrV:19371980-19372060 8.3e-05 9_[+4]_63 chrIII:634730-634810 8.3e-05 10_[+4]_62 chrI:12956980-12957060 8.3e-05 55_[+4]_17 chrV:19024267-19024347 8.3e-05 10_[+4]_62 chrV:19374455-19374535 8.3e-05 5_[+4]_67 chrII:3039692-3039772 8.3e-05 53_[+4]_19 chrI:12956112-12956192 8.3e-05 57_[+4]_15 chrIII:12316692-12316772 9.9e-05 57_[+4]_15 chrV:18388386-18388466 0.00014 21_[+4]_51 chrV:8495241-8495321 0.00014 20_[+4]_52 chrIII:4695335-4695415 0.00014 51_[+4]_21 chrV:19008090-19008170 0.00014 18_[+4]_54 chrIV:1878730-1878810 0.00014 16_[+4]_56 chrIII:4489074-4489154 0.00015 29_[+4]_43 chrIII:6171398-6171478 0.00015 17_[+4]_55 chrV:20483638-20483718 0.00022 20_[+4]_52 chrIII:9617090-9617170 0.00022 45_[+4]_27 chrI:2914593-2914673 0.00022 21_[+4]_51 chrX:5059513-5059593 0.00022 58_[+4]_14 chrIII:13341062-13341142 0.00022 2_[+4]_70 chrX:4588091-4588171 0.00023 21_[+4]_51 chrIII:7928694-7928774 0.00023 56_[+4]_16 chrII:3036691-3036771 0.00023 41_[+4]_31 chrI:5290815-5290895 0.00026 23_[+4]_49 chrI:7707399-7707479 0.00026 29_[+4]_43 chrI:5828232-5828312 0.00026 32_[+4]_40 chrX:11662735-11662815 0.00026 20_[+4]_52 chrI:5158138-5158218 0.00026 50_[+4]_22 chrIV:3338496-3338576 0.00031 46_[+4]_26 chrII:873556-873636 0.00031 36_[+4]_36 chrV:19079275-19079355 0.00031 3_[+4]_69 chrI:3223011-3223091 0.00031 59_[+4]_13 chrX:14137688-14137768 0.00031 7_[+4]_65 chrIV:8923750-8923830 0.00031 43_[+4]_29 chrIV:15473688-15473768 0.00031 38_[+4]_34 chrV:20486029-20486109 0.00031 65_[+4]_7 chrX:12453626-12453706 0.00031 14_[+4]_58 chrIV:8888668-8888748 0.00032 25_[+4]_47 chrV:5047388-5047468 0.00032 50_[+4]_22 chrIV:6664397-6664477 0.00041 7_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGARAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACGARAA width=8 seqs=61 chrIV:1496115-1496195 ( 3) CACGAGAA 1 chrIV:4360661-4360741 ( 21) CACGAGAA 1 chrI:5291930-5292010 ( 3) CACGAGAA 1 chrIV:813524-813604 ( 1) CACGAGAA 1 chrI:14731721-14731801 ( 39) CACGAGAA 1 chrII:11694598-11694678 ( 39) CACGAGAA 1 chrI:4587538-4587618 ( 70) CACGAGAA 1 chrV:19373373-19373453 ( 4) CACGAGAA 1 chrV:19212595-19212675 ( 45) CACGAGAA 1 chrI:12571130-12571210 ( 34) CACGAGAA 1 chrIII:3695551-3695631 ( 51) CACGAGAA 1 chrIII:7795454-7795534 ( 16) CACGAGAA 1 chrI:10718345-10718425 ( 47) CACGAGAA 1 chrII:13958505-13958585 ( 45) CACGAGAA 1 chrII:3036490-3036570 ( 6) CACGAGAA 1 chrIII:10266975-10267055 ( 39) CACGAGAA 1 chrX:34569-34649 ( 11) CACGAGAA 1 chrV:13672034-13672114 ( 53) CACGAAAA 1 chrII:3130215-3130295 ( 18) CACGAAAA 1 chrX:13918312-13918392 ( 19) CACGGGAA 1 chrV:18178396-18178476 ( 22) CACTAGAA 1 chrV:19371980-19372060 ( 10) CACTAGAA 1 chrIII:634730-634810 ( 11) CACCAGAA 1 chrI:12956980-12957060 ( 56) CACCAGAA 1 chrV:19024267-19024347 ( 11) CACCAGAA 1 chrV:19374455-19374535 ( 6) CACTAGAA 1 chrII:3039692-3039772 ( 54) CACTAGAA 1 chrI:12956112-12956192 ( 58) CACTAGAA 1 chrIII:12316692-12316772 ( 58) CACGGAAA 1 chrV:18388386-18388466 ( 22) CACTAAAA 1 chrV:8495241-8495321 ( 21) CACCAAAA 1 chrIII:4695335-4695415 ( 52) CACCAAAA 1 chrV:19008090-19008170 ( 19) CACCAAAA 1 chrIV:1878730-1878810 ( 17) CACCAAAA 1 chrIII:4489074-4489154 ( 30) CACGCGAA 1 chrIII:6171398-6171478 ( 18) CACGCGAA 1 chrV:20483638-20483718 ( 21) CACTGGAA 1 chrIII:9617090-9617170 ( 46) CACGAGAG 1 chrI:2914593-2914673 ( 22) CACTGGAA 1 chrX:5059513-5059593 ( 59) CACGAGAG 1 chrIII:13341062-13341142 ( 3) CACGAGAG 1 chrX:4588091-4588171 ( 22) CACGCAAA 1 chrIII:7928694-7928774 ( 57) CACGCAAA 1 chrII:3036691-3036771 ( 42) CACGCAAA 1 chrI:5290815-5290895 ( 24) CACAAAAA 1 chrI:7707399-7707479 ( 30) CACAAAAA 1 chrI:5828232-5828312 ( 33) CACAAAAA 1 chrX:11662735-11662815 ( 21) CACAAAAA 1 chrI:5158138-5158218 ( 51) CACAAAAA 1 chrIV:3338496-3338576 ( 47) CACTGAAA 1 chrII:873556-873636 ( 37) CACCGAAA 1 chrV:19079275-19079355 ( 4) CACTGAAA 1 chrI:3223011-3223091 ( 60) CACCGAAA 1 chrX:14137688-14137768 ( 8) CACCGAAA 1 chrIV:8923750-8923830 ( 44) CACTGAAA 1 chrIV:15473688-15473768 ( 39) CACTGAAA 1 chrV:20486029-20486109 ( 66) CACCGAAA 1 chrX:12453626-12453706 ( 15) CACGAAAG 1 chrIV:8888668-8888748 ( 26) CACGTGAA 1 chrV:5047388-5047468 ( 51) CACGTGAA 1 chrIV:6664397-6664477 ( 8) CACTAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGARAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.50978 E= 1.0e-019 -1257 213 -1257 -1257 185 -1257 -1257 -1257 -1257 213 -1257 -1257 -175 -34 121 -33 132 -148 -21 -303 57 -1257 138 -1257 185 -1257 -1257 -1257 173 -1257 -147 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGARAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 1.0e-019 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.081967 0.180328 0.524590 0.213115 0.688525 0.081967 0.196721 0.032787 0.409836 0.000000 0.590164 0.000000 1.000000 0.000000 0.000000 0.000000 0.918033 0.000000 0.081967 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGARAA MEME-4 regular expression -------------------------------------------------------------------------------- CAC[GT]A[GA]AA -------------------------------------------------------------------------------- Time 20.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCATTT MEME-5 width = 8 sites = 37 llr = 317 E-value = 7.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCATTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2:::61:: pos.-specific C :a:a11:: probability G 8:a:2::: matrix T ::::17aa bits 2.1 *** 1.9 *** 1.7 *** ** 1.5 *** ** Relative 1.3 **** ** Entropy 1.1 **** ** (12.4 bits) 0.9 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCATTT consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCATTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:11676104-11676184 64 1.44e-05 GCGGTTGTTG GCGCATTT CACGTGCAT chrV:18895143-18895223 67 1.44e-05 TGCGTGCTTG GCGCATTT CTCGAT chrII:7758567-7758647 73 1.44e-05 GATGGGGAAG GCGCATTT chrV:19148483-19148563 57 1.44e-05 TGATGCCTTG GCGCATTT TTCGTGCCTT chrIV:6664397-6664477 48 1.44e-05 GTGTTTGCTT GCGCATTT TTGTGGATTT chrIII:5719970-5720050 41 1.44e-05 TCGATATCTA GCGCATTT CTCGATAACC chrV:9382695-9382775 49 1.44e-05 ttttttgctg gcgcattt cgcgacgtgg chrX:14435806-14435886 63 1.44e-05 cgtgttgcgg gcgcattt ctcgacgccg chrIII:9433757-9433837 52 1.44e-05 CGTGTTACTT GCGCATTT TCTTTTCAAA chrI:10970246-10970326 62 2.62e-05 GCGCATGCTG GCGCGTTT TCGGATTTAA chrV:16793506-16793586 22 2.62e-05 TCGCAACGAT GCGCGTTT GCCGCTTCAA chrIV:2776894-2776974 54 2.62e-05 CTCGTGCTTT GCGCGTTT CTGaaaagaa chrII:6056077-6056157 61 2.62e-05 TTCTCGTTCT GCGCGTTT TCAGTGTGTA chrV:18389989-18390069 70 4.38e-05 TAGCGCCTTG ACGCATTT CTA chrV:18573624-18573704 29 4.38e-05 TTGCGCCTTG ACGCATTT CTAGTGCCTT chrV:18619533-18619613 18 4.38e-05 TAGTGCCTTG ACGCATTT CTTGTGCCTT chrV:18575391-18575471 28 4.38e-05 TAGTGCCTTG ACGCATTT CTAGTCCCTT chrII:7147722-7147802 53 5.61e-05 TAGCCATGGA GCGCACTT GAAAATCGCT chrIII:634730-634810 39 5.61e-05 CTTCTCGTTT GCGCACTT TCGGTGCGTT chrV:19008090-19008170 2 5.61e-05 G GCGCACTT CTCGTCCATC chrV:19821773-19821853 70 7.10e-05 TTGTGCATTG GCGCAATT CTG chrV:19023410-19023490 2 7.10e-05 G GCGCAATT CTCGATACGC chrIV:10368003-10368083 65 8.29e-05 ATAAATGCAT GCGCCTTT AAAAAATT chrII:14247368-14247448 8 8.29e-05 ACTTCAT GCGCCTTT AGTTAATCGC chrIII:2598820-2598900 4 8.29e-05 CAT GCGCCTTT AATTTTGTAG chrII:3038487-3038567 44 9.69e-05 TAGTGCCTCG GCGCTTTT GGGGTGCCTT chrV:18684553-18684633 51 9.69e-05 TAGTGCCTTG GCGCTTTT CTAGTGCCTT chrV:19012348-19012428 73 9.69e-05 ATCACCTATG GCGCTTTT chrIV:2349069-2349149 68 1.11e-04 TCGTGCGTTG ACGCGTTT CTCGT chrII:1403326-1403406 39 1.11e-04 CTGGTCATCA ACGCGTTT GCTGTCCTCA chrIII:9617090-9617170 14 1.21e-04 TCGCGCTTCC GCGCGCTT TGAAAAACTA chrIII:5727973-5728053 8 1.34e-04 TTTCAAG GCGCGATT ATGATTTTCG chrII:7298455-7298535 67 1.49e-04 GAGGTTCCGC ACGCACTT GAGAGT chrV:18676447-18676527 37 1.67e-04 TAGTGCCTTG ACGCAATT CTAGTGCGCT chrV:19380180-19380260 13 1.67e-04 TACCGCCTTG ACGCAATT CTAGTGCCTT chrIII:3171499-3171579 73 2.21e-04 CCATTCAAAG GCGCATTC chrX:11662735-11662815 5 2.60e-04 TCGC GCGCATAT CATAACTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCATTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11676104-11676184 1.4e-05 63_[+5]_9 chrV:18895143-18895223 1.4e-05 66_[+5]_6 chrII:7758567-7758647 1.4e-05 72_[+5] chrV:19148483-19148563 1.4e-05 56_[+5]_16 chrIV:6664397-6664477 1.4e-05 47_[+5]_25 chrIII:5719970-5720050 1.4e-05 40_[+5]_32 chrV:9382695-9382775 1.4e-05 48_[+5]_24 chrX:14435806-14435886 1.4e-05 62_[+5]_10 chrIII:9433757-9433837 1.4e-05 51_[+5]_21 chrI:10970246-10970326 2.6e-05 61_[+5]_11 chrV:16793506-16793586 2.6e-05 21_[+5]_51 chrIV:2776894-2776974 2.6e-05 53_[+5]_19 chrII:6056077-6056157 2.6e-05 60_[+5]_12 chrV:18389989-18390069 4.4e-05 69_[+5]_3 chrV:18573624-18573704 4.4e-05 28_[+5]_44 chrV:18619533-18619613 4.4e-05 17_[+5]_55 chrV:18575391-18575471 4.4e-05 27_[+5]_45 chrII:7147722-7147802 5.6e-05 52_[+5]_20 chrIII:634730-634810 5.6e-05 38_[+5]_34 chrV:19008090-19008170 5.6e-05 1_[+5]_71 chrV:19821773-19821853 7.1e-05 69_[+5]_3 chrV:19023410-19023490 7.1e-05 1_[+5]_71 chrIV:10368003-10368083 8.3e-05 64_[+5]_8 chrII:14247368-14247448 8.3e-05 7_[+5]_65 chrIII:2598820-2598900 8.3e-05 3_[+5]_69 chrII:3038487-3038567 9.7e-05 43_[+5]_29 chrV:18684553-18684633 9.7e-05 50_[+5]_22 chrV:19012348-19012428 9.7e-05 72_[+5] chrIV:2349069-2349149 0.00011 67_[+5]_5 chrII:1403326-1403406 0.00011 38_[+5]_34 chrIII:9617090-9617170 0.00012 13_[+5]_59 chrIII:5727973-5728053 0.00013 7_[+5]_65 chrII:7298455-7298535 0.00015 66_[+5]_6 chrV:18676447-18676527 0.00017 36_[+5]_36 chrV:19380180-19380260 0.00017 12_[+5]_60 chrIII:3171499-3171579 0.00022 72_[+5] chrX:11662735-11662815 0.00026 4_[+5]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCATTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCATTT width=8 seqs=37 chrII:11676104-11676184 ( 64) GCGCATTT 1 chrV:18895143-18895223 ( 67) GCGCATTT 1 chrII:7758567-7758647 ( 73) GCGCATTT 1 chrV:19148483-19148563 ( 57) GCGCATTT 1 chrIV:6664397-6664477 ( 48) GCGCATTT 1 chrIII:5719970-5720050 ( 41) GCGCATTT 1 chrV:9382695-9382775 ( 49) GCGCATTT 1 chrX:14435806-14435886 ( 63) GCGCATTT 1 chrIII:9433757-9433837 ( 52) GCGCATTT 1 chrI:10970246-10970326 ( 62) GCGCGTTT 1 chrV:16793506-16793586 ( 22) GCGCGTTT 1 chrIV:2776894-2776974 ( 54) GCGCGTTT 1 chrII:6056077-6056157 ( 61) GCGCGTTT 1 chrV:18389989-18390069 ( 70) ACGCATTT 1 chrV:18573624-18573704 ( 29) ACGCATTT 1 chrV:18619533-18619613 ( 18) ACGCATTT 1 chrV:18575391-18575471 ( 28) ACGCATTT 1 chrII:7147722-7147802 ( 53) GCGCACTT 1 chrIII:634730-634810 ( 39) GCGCACTT 1 chrV:19008090-19008170 ( 2) GCGCACTT 1 chrV:19821773-19821853 ( 70) GCGCAATT 1 chrV:19023410-19023490 ( 2) GCGCAATT 1 chrIV:10368003-10368083 ( 65) GCGCCTTT 1 chrII:14247368-14247448 ( 8) GCGCCTTT 1 chrIII:2598820-2598900 ( 4) GCGCCTTT 1 chrII:3038487-3038567 ( 44) GCGCTTTT 1 chrV:18684553-18684633 ( 51) GCGCTTTT 1 chrV:19012348-19012428 ( 73) GCGCTTTT 1 chrIV:2349069-2349149 ( 68) ACGCGTTT 1 chrII:1403326-1403406 ( 39) ACGCGTTT 1 chrIII:9617090-9617170 ( 14) GCGCGCTT 1 chrIII:5727973-5728053 ( 8) GCGCGATT 1 chrII:7298455-7298535 ( 67) ACGCACTT 1 chrV:18676447-18676527 ( 37) ACGCAATT 1 chrV:19380180-19380260 ( 13) ACGCAATT 1 chrIII:3171499-3171579 ( 73) GCGCATTC 1 chrX:11662735-11662815 ( 5) GCGCATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCATTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.1086 E= 7.5e-008 -19 -1185 174 -1185 -1185 213 -1185 -1185 -1185 -1185 214 -1185 -1185 213 -1185 -1185 117 -149 -7 -172 -103 -76 -1185 145 -335 -1185 -1185 186 -1185 -308 -1185 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCATTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 7.5e-008 0.243243 0.000000 0.756757 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.621622 0.081081 0.216216 0.081081 0.135135 0.135135 0.000000 0.729730 0.027027 0.000000 0.000000 0.972973 0.000000 0.027027 0.000000 0.972973 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCATTT MEME-5 regular expression -------------------------------------------------------------------------------- [GA]CGC[AG]TTT -------------------------------------------------------------------------------- Time 24.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5455642-5455722 9.36e-02 80 chrV:1599259-1599339 5.29e-02 2_[+1(8.17e-05)]_70 chrIII:8852902-8852982 9.11e-01 80 chrX:9117688-9117768 9.78e-06 23_[+1(6.01e-05)]_24_[+2(1.85e-05)]_\ 17 chrX:34569-34649 1.29e-07 [+1(7.09e-05)]_2_[+4(1.59e-05)]_1_\ [+1(1.04e-05)]_12_[+5(2.62e-05)]_33 chrIII:10266975-10267055 2.70e-06 2_[+4(3.53e-05)]_28_[+4(1.59e-05)]_\ 34 chrIV:2671573-2671653 6.76e-01 80 chrIV:2650843-2650923 1.06e-02 3_[+1(2.32e-05)]_69 chrI:12956112-12956192 6.02e-03 28_[+1(2.32e-05)]_11_[+1(2.32e-05)]_\ 2_[+4(8.32e-05)]_15 chrIII:7669236-7669316 3.75e-01 80 chrIII:7669477-7669557 4.73e-01 80 chrII:416954-417034 1.84e-04 23_[+2(9.48e-05)]_49 chrV:8057961-8058041 7.05e-01 80 chrV:15538081-15538161 9.55e-07 43_[+3(1.39e-05)]_6_[+5(9.69e-05)]_\ 15 chrIII:9433757-9433837 4.07e-06 11_[+1(8.17e-05)]_8_[+2(1.85e-05)]_\ 16_[+5(1.44e-05)]_21 chrIII:12316692-12316772 4.61e-04 48_[+1(3.58e-05)]_1_[+4(9.91e-05)]_\ 15 chrIII:6188188-6188268 4.96e-01 80 chrII:6056077-6056157 9.15e-06 31_[+1(8.17e-05)]_5_[+5(2.62e-05)]_\ 8_[+5(2.62e-05)]_12 chrX:15707196-15707276 2.37e-07 11_[+1(3.58e-05)]_18_[+3(1.39e-05)]_\ 17_[+2(1.85e-05)]_10 chrIV:2776894-2776974 8.18e-08 13_[+1(2.32e-05)]_10_[+2(1.85e-05)]_\ 2_[+3(1.39e-05)]_4_[+5(2.62e-05)]_19 chrIV:8923529-8923609 7.50e-03 22_[+1(7.09e-05)]_11_[+1(1.04e-05)]_\ 31 chrV:18619334-18619414 2.01e-04 3_[+2(9.48e-05)]_2_[+3(3.08e-05)]_1_\ [+2(9.48e-05)]_21_[+3(3.08e-05)]_1_[+2(9.48e-05)]_12 chrII:3036490-3036570 5.15e-03 5_[+4(1.59e-05)]_1_[+1(7.09e-05)]_\ 21_[+4(8.32e-05)]_1_[+1(7.09e-05)]_20 chrI:6660243-6660323 1.55e-05 24_[+5(1.44e-05)]_48 chrII:3130215-3130295 9.02e-03 17_[+4(3.53e-05)]_55 chrIV:1878730-1878810 1.20e-03 24_[+1(3.58e-05)]_48 chrV:19008090-19008170 5.71e-10 1_[+5(5.61e-05)]_18_[+1(1.04e-05)]_\ 9_[+2(1.85e-05)]_2_[+3(1.39e-05)]_18 chrIII:536466-536546 3.24e-04 20_[+2(4.95e-05)]_52 chrII:13958505-13958585 6.31e-03 44_[+4(1.59e-05)]_28 chrV:19380180-19380260 5.72e-05 8_[+2(9.48e-05)]_2_[+3(3.08e-05)]_\ 11_[+3(3.08e-05)]_11_[+3(1.39e-05)]_1_[+2(2.86e-05)]_7 chrI:10718345-10718425 2.62e-04 46_[+4(1.59e-05)]_26 chrIII:8861172-8861252 5.03e-01 80 chrI:5157937-5158017 6.66e-01 80 chrIII:7795454-7795534 2.78e-07 15_[+4(1.59e-05)]_19_[+2(9.48e-05)]_\ 2_[+3(3.08e-05)]_20 chrV:5047388-5047468 5.48e-02 80 chrV:18575391-18575471 3.47e-05 4_[+2(2.86e-05)]_2_[+3(3.08e-05)]_5_\ [+5(4.38e-05)]_17_[+3(3.08e-05)]_20 chrV:16203834-16203914 6.01e-01 80 chrV:15392241-15392321 3.10e-02 8_[+1(8.17e-05)]_64 chrX:13918312-13918392 1.01e-04 10_[+1(6.01e-05)]_[+4(4.84e-05)]_54 chrII:650449-650529 1.10e-03 18_[+1(2.32e-05)]_25_[+2(1.85e-05)]_\ 21 chrV:15538280-15538360 5.97e-01 80 chrIII:13341062-13341142 1.11e-03 11_[+1(1.04e-05)]_4_[+1(7.09e-05)]_\ 49 chrX:14435806-14435886 8.86e-08 21_[+1(3.58e-05)]_9_[+2(5.99e-05)]_\ 2_[+3(1.39e-05)]_6_[+5(1.44e-05)]_10 chrI:10720348-10720428 1.88e-02 80 chrX:12453626-12453706 1.34e-07 23_[+1(6.01e-05)]_6_[+2(1.00e-05)]_\ 35 chrX:5486099-5486179 2.01e-04 26_[+3(7.08e-05)]_46 chrV:12599622-12599702 7.51e-05 46_[+2(5.99e-05)]_2_[+3(1.39e-05)]_\ 16 chrV:9382695-9382775 1.38e-06 12_[+1(8.17e-05)]_8_[+2(1.00e-05)]_\ 12_[+5(1.44e-05)]_24 chrIII:10267233-10267313 7.16e-01 80 chrV:18619533-18619613 5.73e-05 4_[+3(3.08e-05)]_5_[+5(4.38e-05)]_7_\ [+2(2.86e-05)]_2_[+3(3.08e-05)]_1_[+2(9.48e-05)]_2_[+3(3.08e-05)]_1_\ [+2(9.48e-05)]_2 chrIII:6171398-6171478 4.95e-03 80 chrI:5158138-5158218 3.95e-01 80 chrIII:13160778-13160858 4.02e-06 26_[+1(3.58e-05)]_24_[+2(1.85e-05)]_\ 14 chrII:3039692-3039772 6.64e-03 5_[+1(2.32e-05)]_40_[+4(8.32e-05)]_\ 1_[+1(2.32e-05)]_10 chrIV:2651045-2651125 1.53e-02 42_[+1(2.32e-05)]_30 chrV:13672034-13672114 1.57e-02 52_[+4(3.53e-05)]_20 chrIV:4744427-4744507 8.55e-01 80 chrIII:13341274-13341354 8.16e-03 51_[+3(3.08e-05)]_21 chrIII:3695551-3695631 1.01e-04 8_[+3(4.27e-05)]_34_[+4(1.59e-05)]_\ 22 chrIII:5719970-5720050 2.07e-05 40_[+5(1.44e-05)]_15_[+1(2.32e-05)]_\ 9 chrV:18573624-18573704 5.27e-05 24_[+2(9.48e-05)]_2_[+3(3.08e-05)]_\ 1_[+2(9.48e-05)]_2_[+3(1.39e-05)]_1_[+2(4.95e-05)]_10 chrII:3036691-3036771 1.09e-02 31_[+1(2.32e-05)]_30_[+1(2.32e-05)]_\ 3 chrV:16204039-16204119 4.13e-01 80 chrX:5059513-5059593 4.40e-04 32_[+1(6.01e-05)]_10_[+1(1.04e-05)]_\ 22 chrV:1870759-1870839 2.32e-01 80 chrIV:6664397-6664477 9.76e-06 22_[+2(9.48e-05)]_2_[+3(7.08e-05)]_\ 7_[+5(1.44e-05)]_25 chrI:12571341-12571421 4.46e-04 20_[+3(3.08e-05)]_52 chrIII:7712055-7712135 1.34e-01 80 chrV:19148483-19148563 4.59e-05 5_[+3(7.08e-05)]_1_[+2(2.86e-05)]_\ 15_[+5(1.44e-05)]_7_[+2(2.86e-05)]_2_[+3(7.08e-05)]_1_[+2(9.48e-05)]_1 chrIII:3697369-3697449 4.89e-05 10_[+3(1.39e-05)]_62 chrV:15767544-15767624 9.30e-01 80 chrII:650655-650735 5.92e-01 80 chrV:20484638-20484718 4.07e-01 80 chrI:4587329-4587409 8.93e-01 80 chrI:8574391-8574471 1.04e-02 80 chrV:19374455-19374535 5.70e-04 5_[+4(8.32e-05)]_1_[+1(2.32e-05)]_\ 11_[+1(2.32e-05)]_30_[+1(2.32e-05)]_1 chrI:12954715-12954795 5.60e-04 25_[+3(3.08e-05)]_11_[+3(3.08e-05)]_\ 1_[+2(9.48e-05)]_19 chrIII:2598608-2598688 8.01e-01 80 chrII:6049729-6049809 9.74e-01 80 chrV:20486029-20486109 3.37e-01 80 chrIII:3174054-3174134 2.92e-07 11_[+1(1.04e-05)]_19_[+5(1.44e-05)]_\ 34 chrI:2914593-2914673 6.93e-03 30_[+1(8.17e-05)]_42 chrIII:4489074-4489154 5.21e-03 21_[+1(8.17e-05)]_9_[+1(6.01e-05)]_\ 34 chrII:7758567-7758647 6.72e-05 5_[+3(7.08e-05)]_59_[+5(1.44e-05)] chrIV:2655182-2655262 3.56e-01 80 chrV:19024267-19024347 6.45e-04 [+1(2.32e-05)]_2_[+4(8.32e-05)]_1_\ [+1(1.04e-05)]_11_[+1(2.32e-05)]_34 chrX:3204161-3204241 5.90e-02 80 chrII:1403326-1403406 1.98e-01 80 chrIII:9617090-9617170 2.35e-07 54_[+1(1.04e-05)]_18 chrIII:1316988-1317068 4.89e-01 80 chrIV:15042295-15042375 3.08e-02 80 chrIII:3234622-3234702 4.65e-06 20_[+2(9.48e-05)]_11_[+2(2.86e-05)]_\ 11_[+2(2.86e-05)]_2_[+3(3.08e-05)]_4 chrIV:15473688-15473768 3.99e-01 80 chrI:1712342-1712422 1.09e-01 80 chrIV:15793382-15793462 4.41e-01 80 chrIV:8923750-8923830 2.39e-01 80 chrV:19012348-19012428 1.47e-01 72_[+5(9.69e-05)] chrV:20483638-20483718 3.01e-08 29_[+1(1.04e-05)]_10_[+2(4.95e-05)]_\ 2_[+3(4.27e-05)]_15 chrI:12571130-12571210 1.74e-08 23_[+1(6.01e-05)]_2_[+4(1.59e-05)]_\ 20_[+5(1.44e-05)]_11 chrI:12956980-12957060 3.40e-02 55_[+4(8.32e-05)]_17 chrIV:5541435-5541515 1.55e-07 16_[+1(2.32e-05)]_11_[+5(1.44e-05)]_\ 16_[+1(2.32e-05)]_13 chrV:18573419-18573499 6.04e-07 39_[+2(1.00e-05)]_2_[+3(1.39e-05)]_\ 1_[+2(9.48e-05)]_2_[+3(1.39e-05)]_4 chrIII:13343548-13343628 5.65e-02 80 chrX:14137688-14137768 6.21e-02 80 chrIII:634730-634810 6.45e-09 10_[+4(8.32e-05)]_1_[+1(9.49e-05)]_\ 11_[+5(5.61e-05)]_7_[+2(1.00e-05)]_2_[+3(4.27e-05)]_9 chrV:15065546-15065626 3.59e-03 80 chrX:11662735-11662815 4.91e-05 29_[+1(1.04e-05)]_43 chrIII:10320564-10320644 8.74e-01 80 chrV:19212595-19212675 4.31e-04 25_[+4(9.91e-05)]_11_[+4(1.59e-05)]_\ 1_[+1(1.04e-05)]_19 chrIV:4047815-4047895 3.97e-01 80 chrV:19031145-19031225 4.58e-01 80 chrX:2559560-2559640 4.37e-03 10_[+1(7.09e-05)]_62 chrV:19373373-19373453 8.68e-04 3_[+4(1.59e-05)]_1_[+1(2.32e-05)]_2_\ [+4(8.32e-05)]_1_[+1(2.32e-05)]_11_[+1(2.32e-05)]_22 chrII:6046151-6046231 5.65e-01 80 chrV:9384517-9384597 1.74e-01 80 chrI:4587538-4587618 1.18e-02 69_[+4(1.59e-05)]_3 chrI:3223011-3223091 9.78e-03 46_[+1(1.04e-05)]_14_[+1(2.32e-05)]_\ 4 chrI:6466000-6466080 8.49e-03 50_[+2(9.48e-05)]_22 chrIII:7928694-7928774 2.14e-03 34_[+1(7.09e-05)]_38 chrV:18712246-18712326 6.63e-01 80 chrV:19371980-19372060 1.88e-04 9_[+4(8.32e-05)]_20_[+1(1.04e-05)]_\ 11_[+1(6.01e-05)]_16 chrI:11497943-11498023 3.58e-05 38_[+5(1.44e-05)]_34 chrIII:9408485-9408565 2.22e-01 80 chrV:18684553-18684633 7.98e-05 8_[+2(9.48e-05)]_11_[+2(9.48e-05)]_\ 2_[+3(3.08e-05)]_1_[+2(2.86e-05)]_2_[+3(3.08e-05)]_1_[+2(2.86e-05)]_7 chrI:5828232-5828312 7.02e-04 66_[+1(7.09e-05)]_6 chrII:14245024-14245104 2.40e-01 80 chrX:6505175-6505255 1.72e-03 13_[+1(6.01e-05)]_12_[+1(3.58e-05)]_\ 39 chrIII:2598820-2598900 4.26e-02 3_[+5(8.29e-05)]_69 chrIII:1037320-1037400 6.33e-06 40_[+1(6.01e-05)]_13_[+5(1.44e-05)]_\ 11 chrV:16793506-16793586 2.69e-02 21_[+5(2.62e-05)]_51 chrIV:15046157-15046237 4.53e-01 80 chrIII:3868507-3868587 8.08e-01 80 chrV:8413766-8413846 2.87e-01 80 chrII:1402320-1402400 1.52e-04 39_[+1(6.01e-05)]_8_[+2(2.86e-05)]_\ 17 chrIII:2711683-2711763 6.27e-02 80 chrII:3039895-3039975 1.04e-02 8_[+1(2.32e-05)]_49_[+1(1.04e-05)]_\ 7 chrIII:10708549-10708629 9.87e-01 80 chrI:10970246-10970326 6.40e-08 21_[+1(1.04e-05)]_7_[+2(1.00e-05)]_\ 2_[+3(4.27e-05)]_3_[+2(1.85e-05)]_15 chrII:8158152-8158232 9.85e-05 36_[+2(4.95e-05)]_36 chrV:13664495-13664575 7.92e-06 43_[+1(1.04e-05)]_12_[+5(1.44e-05)]_\ 9 chrIII:9443160-9443240 9.96e-01 80 chrX:4588091-4588171 1.29e-05 30_[+1(7.09e-05)]_10_[+5(5.61e-05)]_\ 24 chrV:19023410-19023490 3.21e-02 1_[+5(7.10e-05)]_71 chrII:11694598-11694678 2.28e-04 38_[+4(1.59e-05)]_34 chrIV:4538800-4538880 4.66e-01 80 chrIII:7495851-7495931 9.59e-01 80 chrI:14731721-14731801 1.86e-05 38_[+4(1.59e-05)]_21_[+2(2.86e-05)]_\ 5 chrIII:5727973-5728053 1.17e-01 80 chrIV:2931299-2931379 4.02e-01 80 chrIII:4999100-4999180 7.01e-01 80 chrX:2639310-2639390 4.50e-02 80 chrX:2634278-2634358 3.37e-01 80 chrI:7287846-7287926 2.43e-01 80 chrIII:3171499-3171579 1.92e-02 80 chrII:14247368-14247448 4.93e-02 7_[+5(8.29e-05)]_65 chrI:11745571-11745651 8.18e-01 80 chrIV:813524-813604 7.63e-03 [+4(1.59e-05)]_72 chrII:7147722-7147802 1.38e-04 52_[+5(5.61e-05)]_11_[+5(1.44e-05)]_\ 1 chrI:5138071-5138151 1.28e-02 80 chrIII:6210602-6210682 3.81e-01 80 chrI:6282543-6282623 8.23e-03 80 chrI:6358574-6358654 1.95e-03 3_[+1(9.49e-05)]_69 chrIV:14464974-14465054 6.79e-01 80 chrI:7726614-7726694 8.61e-01 80 chrI:946058-946138 2.80e-02 43_[+1(2.32e-05)]_29 chrII:1402528-1402608 4.32e-01 80 chrV:18895143-18895223 4.36e-05 44_[+2(1.85e-05)]_14_[+5(1.44e-05)]_\ 6 chrIV:14889056-14889136 8.60e-01 80 chrIV:4347823-4347903 5.53e-01 80 chrV:15769249-15769329 8.31e-02 80 chrV:19079275-19079355 1.25e-01 80 chrIV:15933292-15933372 2.29e-01 80 chrII:873556-873636 6.16e-04 45_[+1(1.04e-05)]_27 chrIV:15476499-15476579 4.91e-02 80 chrV:19821436-19821516 2.38e-03 13_[+3(3.08e-05)]_11_[+3(3.08e-05)]_\ 11_[+3(3.08e-05)]_1_[+2(9.48e-05)]_2_[+3(3.08e-05)]_2 chrIV:15187672-15187752 9.88e-01 80 chrIV:15473888-15473968 2.76e-01 80 chrIV:13786833-13786913 1.39e-01 80 chrV:18389989-18390069 1.36e-04 27_[+2(9.48e-05)]_2_[+3(3.08e-05)]_\ 1_[+2(9.48e-05)]_2_[+3(8.52e-05)]_5_[+5(4.38e-05)]_3 chrIV:13870282-13870362 9.15e-01 80 chrI:7707399-7707479 2.03e-01 80 chrV:20486267-20486347 5.70e-01 80 chrI:3788747-3788827 4.66e-01 80 chrI:12728323-12728403 7.96e-01 80 chrIV:2349069-2349149 4.73e-08 28_[+1(6.01e-05)]_8_[+2(1.85e-05)]_\ 2_[+3(1.39e-05)]_1_[+2(4.95e-05)]_9 chrIV:8888668-8888748 1.56e-02 80 chrI:9665425-9665505 5.67e-01 80 chrIII:9745814-9745894 7.61e-01 80 chrII:417157-417237 8.95e-01 80 chrIII:4695335-4695415 1.19e-01 80 chrV:5275127-5275207 2.86e-07 3_[+5(1.44e-05)]_16_[+1(6.01e-05)]_\ 45 chrV:7221198-7221278 8.50e-01 80 chrV:19032188-19032268 1.40e-02 3_[+1(2.32e-05)]_69 chrV:19001096-19001176 4.54e-02 80 chrV:8355611-8355691 5.28e-01 80 chrX:5298292-5298372 2.48e-02 80 chrIV:15530547-15530627 9.65e-01 80 chrIII:7102374-7102454 6.37e-01 80 chrIV:8826737-8826817 1.00e-01 80 chrII:3038487-3038567 1.50e-05 20_[+2(2.86e-05)]_2_[+3(3.08e-05)]_\ 5_[+5(9.69e-05)]_7_[+2(2.86e-05)]_2_[+3(1.39e-05)]_4 chrIV:13701643-13701723 6.55e-03 23_[+2(1.00e-05)]_49 chrV:8499577-8499657 8.43e-01 80 chrII:11676104-11676184 6.01e-05 21_[+2(5.99e-05)]_12_[+2(1.00e-05)]_\ 10_[+2(1.00e-05)]_13 chrIII:1164796-1164876 4.89e-01 80 chrIII:4449547-4449627 9.76e-02 80 chrII:730102-730182 6.43e-05 40_[+5(1.44e-05)]_32 chrI:5290815-5290895 7.52e-02 80 chrIII:7773324-7773404 2.26e-02 80 chrI:2996028-2996108 2.42e-01 80 chrX:5485774-5485854 4.92e-01 80 chrV:18676447-18676527 2.50e-04 4_[+3(3.08e-05)]_1_[+2(5.99e-05)]_2_\ [+3(3.08e-05)]_1_[+2(9.48e-05)]_2_[+3(3.08e-05)]_1_[+2(5.99e-05)]_2_\ [+3(3.08e-05)]_1_[+2(9.48e-05)]_2 chrII:7298455-7298535 7.08e-03 80 chrV:5717416-5717496 8.71e-01 80 chrV:8495241-8495321 3.15e-01 80 chrI:1712550-1712630 3.80e-01 80 chrIII:1163350-1163430 4.68e-01 80 chrV:12683370-12683450 2.25e-01 80 chrV:9513757-9513837 1.53e-06 23_[+1(2.32e-05)]_18_[+3(7.08e-05)]_\ 10_[+3(1.39e-05)]_5 chrV:5510106-5510186 8.09e-02 80 chrII:8743134-8743214 4.62e-01 80 chrIII:7771160-7771240 2.94e-06 57_[+2(1.85e-05)]_2_[+3(7.08e-05)]_\ 5 chrV:10203810-10203890 8.55e-02 80 chrI:5176028-5176108 8.59e-01 80 chrII:7309955-7310035 7.14e-01 80 chrV:19821773-19821853 8.37e-06 8_[+2(7.21e-05)]_2_[+3(3.08e-05)]_1_\ [+2(2.86e-05)]_11_[+2(2.86e-05)]_15_[+5(7.10e-05)]_3 chrIII:634930-635010 2.76e-01 80 chrV:13664694-13664774 4.45e-01 80 chrIII:9523735-9523815 2.44e-04 12_[+4(9.91e-05)]_60 chrX:12860848-12860928 4.11e-06 60_[+2(1.00e-05)]_12 chrV:19142759-19142839 1.79e-01 80 chrIV:6664607-6664687 7.40e-02 80 chrV:5275328-5275408 2.60e-01 80 chrI:7087766-7087846 1.47e-01 80 chrV:18388386-18388466 2.00e-02 80 chrI:6220058-6220138 5.49e-01 80 chrII:11651330-11651410 3.79e-01 80 chrI:5357200-5357280 2.03e-01 80 chrIII:4984925-4985005 9.14e-01 80 chrI:5291930-5292010 1.12e-08 2_[+4(1.59e-05)]_1_[+1(6.01e-05)]_6_\ [+2(1.00e-05)]_47 chrIII:9616857-9616937 7.32e-01 80 chrIII:1744648-1744728 7.27e-01 80 chrIV:3338496-3338576 7.61e-02 80 chrIV:10368003-10368083 2.07e-02 64_[+5(8.29e-05)]_8 chrI:9671965-9672045 9.90e-01 80 chrIV:4360661-4360741 4.13e-08 10_[+1(6.01e-05)]_2_[+4(1.59e-05)]_\ 1_[+1(1.04e-05)]_8_[+2(2.86e-05)]_27 chrIV:1496115-1496195 6.01e-08 2_[+4(1.59e-05)]_1_[+1(6.01e-05)]_\ 19_[+3(1.39e-05)]_22_[+4(1.59e-05)]_4 chrV:13027002-13027082 7.36e-01 80 chrIV:4389282-4389362 4.41e-01 80 chrV:18178396-18178476 1.60e-02 21_[+4(8.32e-05)]_51 chrII:7123227-7123307 3.99e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************