******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-16.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:12427852-12427932 1.0000 80 chrX:4810242-4810322 1.0000 80 chrV:265394-265474 1.0000 80 chrV:4647976-4648056 1.0000 80 chrV:14546013-14546093 1.0000 80 chrX:4813372-4813452 1.0000 80 chrX:4809421-4809501 1.0000 80 chrIII:10811219-10811299 1.0000 80 chrIII:10856972-10857052 1.0000 80 chrIII:10808062-10808142 1.0000 80 chrIII:3499984-3500064 1.0000 80 chrIV:1687242-1687322 1.0000 80 chrIII:10857831-10857911 1.0000 80 chrI:1836518-1836598 1.0000 80 chrV:11845021-11845101 1.0000 80 chrV:5284426-5284506 1.0000 80 chrV:14524335-14524415 1.0000 80 chrX:2879860-2879940 1.0000 80 chrIV:5848141-5848221 1.0000 80 chrIV:8334151-8334231 1.0000 80 chrX:13675653-13675733 1.0000 80 chrV:16553070-16553150 1.0000 80 chrI:6154494-6154574 1.0000 80 chrII:9308892-9308972 1.0000 80 chrI:13065797-13065877 1.0000 80 chrI:5422313-5422393 1.0000 80 chrV:1821441-1821521 1.0000 80 chrIII:11236946-11237026 1.0000 80 chrX:4800265-4800345 1.0000 80 chrV:18719649-18719729 1.0000 80 chrIV:14576572-14576652 1.0000 80 chrII:5873845-5873925 1.0000 80 chrIV:10817124-10817204 1.0000 80 chrIII:3476333-3476413 1.0000 80 chrIV:1549203-1549283 1.0000 80 chrI:13421142-13421222 1.0000 80 chrIII:10869084-10869164 1.0000 80 chrIII:5769883-5769963 1.0000 80 chrI:11202391-11202471 1.0000 80 chrV:8785626-8785706 1.0000 80 chrI:1175837-1175917 1.0000 80 chrII:1242591-1242671 1.0000 80 chrII:5836444-5836524 1.0000 80 chrIII:10432263-10432343 1.0000 80 chrIII:12673513-12673593 1.0000 80 chrIV:11071028-11071108 1.0000 80 chrI:6175170-6175250 1.0000 80 chrIII:13720523-13720603 1.0000 80 chrX:3226954-3227034 1.0000 80 chrI:1575718-1575798 1.0000 80 chrV:7230998-7231078 1.0000 80 chrX:4265632-4265712 1.0000 80 chrI:7969011-7969091 1.0000 80 chrIII:11091872-11091952 1.0000 80 chrIV:2993440-2993520 1.0000 80 chrIV:3399256-3399336 1.0000 80 chrII:2570633-2570713 1.0000 80 chrI:2155649-2155729 1.0000 80 chrII:8039580-8039660 1.0000 80 chrI:933434-933514 1.0000 80 chrI:7712619-7712699 1.0000 80 chrII:8137441-8137521 1.0000 80 chrI:9268966-9269046 1.0000 80 chrIV:14496551-14496631 1.0000 80 chrIII:11290662-11290742 1.0000 80 chrII:12042315-12042395 1.0000 80 chrII:5399327-5399407 1.0000 80 chrIII:3175124-3175204 1.0000 80 chrIII:1202337-1202417 1.0000 80 chrII:7072737-7072817 1.0000 80 chrI:1676636-1676716 1.0000 80 chrV:10717049-10717129 1.0000 80 chrIII:10818578-10818658 1.0000 80 chrIII:12399870-12399950 1.0000 80 chrV:156190-156270 1.0000 80 chrIII:3664369-3664449 1.0000 80 chrX:9296737-9296817 1.0000 80 chrIV:9316210-9316290 1.0000 80 chrI:10026059-10026139 1.0000 80 chrX:9225395-9225475 1.0000 80 chrIV:14876795-14876875 1.0000 80 chrIV:5371044-5371124 1.0000 80 chrII:14528523-14528603 1.0000 80 chrI:6532044-6532124 1.0000 80 chrIII:8874086-8874166 1.0000 80 chrI:6153615-6153695 1.0000 80 chrIII:354471-354551 1.0000 80 chrI:1416031-1416111 1.0000 80 chrIII:640444-640524 1.0000 80 chrI:6446680-6446760 1.0000 80 chrIII:7198979-7199059 1.0000 80 chrII:6734789-6734869 1.0000 80 chrI:6724248-6724328 1.0000 80 chrII:14635302-14635382 1.0000 80 chrV:11239333-11239413 1.0000 80 chrX:14486525-14486605 1.0000 80 chrIII:3271760-3271840 1.0000 80 chrII:7708736-7708816 1.0000 80 chrIV:7486361-7486441 1.0000 80 chrII:4238067-4238147 1.0000 80 chrI:14070969-14071049 1.0000 80 chrIV:15289570-15289650 1.0000 80 chrV:20852176-20852256 1.0000 80 chrIII:1122406-1122486 1.0000 80 chrIII:13182168-13182248 1.0000 80 chrV:18981160-18981240 1.0000 80 chrV:16040593-16040673 1.0000 80 chrX:16275420-16275500 1.0000 80 chrX:12890274-12890354 1.0000 80 chrIII:10904043-10904123 1.0000 80 chrI:4967494-4967574 1.0000 80 chrI:2485592-2485672 1.0000 80 chrIV:1981146-1981226 1.0000 80 chrX:13653730-13653810 1.0000 80 chrX:8556772-8556852 1.0000 80 chrX:13675879-13675959 1.0000 80 chrX:4962525-4962605 1.0000 80 chrIII:13105892-13105972 1.0000 80 chrI:3350081-3350161 1.0000 80 chrX:17181391-17181471 1.0000 80 chrI:6091065-6091145 1.0000 80 chrIII:8650441-8650521 1.0000 80 chrI:289151-289231 1.0000 80 chrI:7772647-7772727 1.0000 80 chrIII:13225128-13225208 1.0000 80 chrV:11029484-11029564 1.0000 80 chrIII:931564-931644 1.0000 80 chrX:4802538-4802618 1.0000 80 chrIV:2033184-2033264 1.0000 80 chrV:1875902-1875982 1.0000 80 chrX:4961751-4961831 1.0000 80 chrIV:12428054-12428134 1.0000 80 chrX:14115665-14115745 1.0000 80 chrII:476192-476272 1.0000 80 chrIII:13293237-13293317 1.0000 80 chrI:6173299-6173379 1.0000 80 chrV:177134-177214 1.0000 80 chrV:6709220-6709300 1.0000 80 chrV:104662-104742 1.0000 80 chrI:2011312-2011392 1.0000 80 chrIV:255642-255722 1.0000 80 chrIII:3324104-3324184 1.0000 80 chrI:14101214-14101294 1.0000 80 chrIV:16497839-16497919 1.0000 80 chrII:8062468-8062548 1.0000 80 chrI:1481421-1481501 1.0000 80 chrI:1823186-1823266 1.0000 80 chrX:8477586-8477666 1.0000 80 chrI:12664996-12665076 1.0000 80 chrII:7001521-7001601 1.0000 80 chrIII:4019898-4019978 1.0000 80 chrIII:3916779-3916859 1.0000 80 chrIII:10817289-10817369 1.0000 80 chrII:13369446-13369526 1.0000 80 chrIV:7488048-7488128 1.0000 80 chrI:853261-853341 1.0000 80 chrII:4791435-4791515 1.0000 80 chrV:7084906-7084986 1.0000 80 chrX:2687348-2687428 1.0000 80 chrI:6163307-6163387 1.0000 80 chrII:10549514-10549594 1.0000 80 chrIV:16863665-16863745 1.0000 80 chrII:13976313-13976393 1.0000 80 chrIII:8144708-8144788 1.0000 80 chrI:11910953-11911033 1.0000 80 chrI:10642461-10642541 1.0000 80 chrIV:5334719-5334799 1.0000 80 chrI:3873928-3874008 1.0000 80 chrI:4933036-4933116 1.0000 80 chrI:11323367-11323447 1.0000 80 chrIII:10845012-10845092 1.0000 80 chrIV:6646004-6646084 1.0000 80 chrI:2487874-2487954 1.0000 80 chrIII:6805530-6805610 1.0000 80 chrIV:15526669-15526749 1.0000 80 chrII:11694670-11694750 1.0000 80 chrI:1271071-1271151 1.0000 80 chrIII:11142232-11142312 1.0000 80 chrV:2694587-2694667 1.0000 80 chrI:7715763-7715843 1.0000 80 chrIV:8973721-8973801 1.0000 80 chrX:3994610-3994690 1.0000 80 chrI:1034352-1034432 1.0000 80 chrX:17030669-17030749 1.0000 80 chrII:6721707-6721787 1.0000 80 chrV:12637397-12637477 1.0000 80 chrIII:3505338-3505418 1.0000 80 chrI:1628664-1628744 1.0000 80 chrIII:11093624-11093704 1.0000 80 chrV:3587818-3587898 1.0000 80 chrV:16022775-16022855 1.0000 80 chrI:488386-488466 1.0000 80 chrII:14063173-14063253 1.0000 80 chrX:9999792-9999872 1.0000 80 chrIII:8768061-8768141 1.0000 80 chrX:16928301-16928381 1.0000 80 chrIII:4912482-4912562 1.0000 80 chrI:8125509-8125589 1.0000 80 chrIII:6551688-6551768 1.0000 80 chrII:8927446-8927526 1.0000 80 chrII:14143959-14144039 1.0000 80 chrIII:5503452-5503532 1.0000 80 chrX:8386239-8386319 1.0000 80 chrX:8646444-8646524 1.0000 80 chrIII:640647-640727 1.0000 80 chrIII:3540563-3540643 1.0000 80 chrII:6898194-6898274 1.0000 80 chrV:20424477-20424557 1.0000 80 chrII:9054812-9054892 1.0000 80 chrIII:11317213-11317293 1.0000 80 chrII:6248661-6248741 1.0000 80 chrV:13962188-13962268 1.0000 80 chrII:6565298-6565378 1.0000 80 chrI:8329807-8329887 1.0000 80 chrIII:10651739-10651819 1.0000 80 chrII:6741616-6741696 1.0000 80 chrV:19723038-19723118 1.0000 80 chrX:16271340-16271420 1.0000 80 chrV:1003923-1004003 1.0000 80 chrV:14689522-14689602 1.0000 80 chrIV:16946855-16946935 1.0000 80 chrIV:16490065-16490145 1.0000 80 chrX:2885523-2885603 1.0000 80 chrI:14721574-14721654 1.0000 80 chrII:5057435-5057515 1.0000 80 chrII:13291569-13291649 1.0000 80 chrIII:11746910-11746990 1.0000 80 chrI:3176615-3176695 1.0000 80 chrV:1474654-1474734 1.0000 80 chrIV:16776061-16776141 1.0000 80 chrX:8969774-8969854 1.0000 80 chrIII:9546119-9546199 1.0000 80 chrX:5056379-5056459 1.0000 80 chrIII:7030566-7030646 1.0000 80 chrV:11532113-11532193 1.0000 80 chrX:9024442-9024522 1.0000 80 chrV:13715457-13715537 1.0000 80 chrII:3502781-3502861 1.0000 80 chrIII:8794915-8794995 1.0000 80 chrII:4942516-4942596 1.0000 80 chrI:8223213-8223293 1.0000 80 chrIV:11692516-11692596 1.0000 80 chrV:11933469-11933549 1.0000 80 chrIII:4905482-4905562 1.0000 80 chrV:10579068-10579148 1.0000 80 chrX:4444268-4444348 1.0000 80 chrII:13462058-13462138 1.0000 80 chrI:11579733-11579813 1.0000 80 chrII:9940581-9940661 1.0000 80 chrI:4647204-4647284 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ztf-16/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-16.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.234 G 0.238 T 0.27 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.234 G 0.238 T 0.27 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCGCGCRC MEME-1 width = 8 sites = 36 llr = 313 E-value = 2.0e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGCGCRC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::214: pos.-specific C 5a:a29:9 probability G 5:a:7:61 matrix T :::::::: bits 2.1 *** 1.9 *** 1.7 *** * * 1.5 *** * * Relative 1.3 *** * * Entropy 1.0 **** *** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCRC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8794915-8794995 2 9.62e-06 C GCGCGCGC GCGAGTGTGA chrI:14721574-14721654 47 9.62e-06 TTTGCAATGC GCGCGCGC GGTTTTCGCA chrIII:3916779-3916859 53 9.62e-06 TGCAAACACT GCGCGCGC AGCTTGCAAG chrII:8062468-8062548 47 9.62e-06 TCTATCTCTT GCGCGCGC GGTGCAAATG chrV:6709220-6709300 20 9.62e-06 GGTCTGCAAC GCGCGCGC GCGTTTTTCG chrV:20852176-20852256 16 9.62e-06 ACCGCAAGAC GCGCGCGC GCTTTCTGCA chrII:7708736-7708816 18 9.62e-06 ACAATGCAAT GCGCGCGC ACGGTTTTTG chrX:3226954-3227034 63 9.62e-06 GAGGGTGGTA GCGCGCGC GAGTTTTCCT chrIII:10869084-10869164 57 9.62e-06 ATAGAGAAAC GCGCGCGC ATTGCAAGGA chrI:5422313-5422393 60 9.62e-06 GAGAAGCAGC GCGCGCGC ACACATCTAA chrIII:3664369-3664449 52 1.91e-05 TTGCAACACG CCGCGCGC ATTTCGCAAC chrV:156190-156270 34 1.91e-05 ATTTGAACAC CCGCGCGC AAAGCGCTTA chrIV:3399256-3399336 64 1.91e-05 GAGAGGAGCG CCGCGCGC ATTTTCTCC chrIII:5503452-5503532 46 2.95e-05 CGAAGGTCTC GCGCGCAC ACAACCGCAC chrI:12664996-12665076 47 2.95e-05 AAACACGGCG GCGCGCAC TTGCGTACTT chrI:8223213-8223293 37 3.98e-05 tcgcaagccg ccgcgcac ttttcttcgt chrII:4791435-4791515 11 3.98e-05 TTTTGAACAA CCGCGCAC TGTGGCCTAA chrV:7230998-7231078 38 3.98e-05 GTCGCAACCC CCGCGCAC TTTTTATGCA chrI:11323367-11323447 16 4.92e-05 CAAATATCGC GCGCCCGC ATTGCAATTG chrIII:13293237-13293317 27 7.92e-05 ttgcaatgcg ccgcacgc ttcttcgtat chrI:1175837-1175917 43 8.95e-05 CAAAAACCGT GCGCCCAC CTTGCAATGA chrX:8556772-8556852 24 1.11e-04 ATCCATACTT GCGCACAC CATCGACCCA chrIV:1981146-1981226 10 1.11e-04 TGCGGCTCC CCGCCCAC TTTTCCGTGC chrII:4238067-4238147 59 1.11e-04 CAACTTAGCT CCGCCCAC CCTTTGAGGT chrIV:9316210-9316290 67 1.11e-04 GTCATCATCC CCGCCCAC TTTTAT chrIII:13720523-13720603 49 1.11e-04 CCACACATAT GCGCACAC GGGAGGGGAA chrIII:11236946-11237026 28 1.11e-04 TGCCTCCGCC CCGCCCAC ATTTCCGCGC chrV:1821441-1821521 38 1.11e-04 TTCGCAATCT GCGCACAC ACTTTGGTTT chrIV:16863665-16863745 20 1.22e-04 CGCAATAGCG CCGCACAC TTTTTTGTTG chrX:9296737-9296817 67 1.22e-04 TGCCACTATG CCGCACAC AACTGG chrV:13962188-13962268 18 1.32e-04 TGCATAAACT GCGCGCGG CAACTGCAAA chrIV:8973721-8973801 16 1.41e-04 GAATCCTAGT CCGCGCGG CCGTGTAGTC chrIII:1202337-1202417 41 1.41e-04 TGTTTGCGGA CCGCGCGG TGTTTGCGTA chrI:11202391-11202471 20 1.41e-04 CTTTATCCCC CCGCGCGG AGAATAAAGG chrV:10717049-10717129 1 1.83e-04 . CCGCGAGC ACTACTGCAT chrV:104662-104742 67 1.95e-04 TCGTAAATCG GCGCGAAC TCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCRC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8794915-8794995 9.6e-06 1_[+1]_71 chrI:14721574-14721654 9.6e-06 46_[+1]_26 chrIII:3916779-3916859 9.6e-06 52_[+1]_20 chrII:8062468-8062548 9.6e-06 46_[+1]_26 chrV:6709220-6709300 9.6e-06 19_[+1]_53 chrV:20852176-20852256 9.6e-06 15_[+1]_57 chrII:7708736-7708816 9.6e-06 17_[+1]_55 chrX:3226954-3227034 9.6e-06 62_[+1]_10 chrIII:10869084-10869164 9.6e-06 56_[+1]_16 chrI:5422313-5422393 9.6e-06 59_[+1]_13 chrIII:3664369-3664449 1.9e-05 51_[+1]_21 chrV:156190-156270 1.9e-05 33_[+1]_39 chrIV:3399256-3399336 1.9e-05 63_[+1]_9 chrIII:5503452-5503532 3e-05 45_[+1]_27 chrI:12664996-12665076 3e-05 46_[+1]_26 chrI:8223213-8223293 4e-05 36_[+1]_36 chrII:4791435-4791515 4e-05 10_[+1]_62 chrV:7230998-7231078 4e-05 37_[+1]_35 chrI:11323367-11323447 4.9e-05 15_[+1]_57 chrIII:13293237-13293317 7.9e-05 26_[+1]_46 chrI:1175837-1175917 8.9e-05 42_[+1]_30 chrX:8556772-8556852 0.00011 23_[+1]_49 chrIV:1981146-1981226 0.00011 9_[+1]_63 chrII:4238067-4238147 0.00011 58_[+1]_14 chrIV:9316210-9316290 0.00011 66_[+1]_6 chrIII:13720523-13720603 0.00011 48_[+1]_24 chrIII:11236946-11237026 0.00011 27_[+1]_45 chrV:1821441-1821521 0.00011 37_[+1]_35 chrIV:16863665-16863745 0.00012 19_[+1]_53 chrX:9296737-9296817 0.00012 66_[+1]_6 chrV:13962188-13962268 0.00013 17_[+1]_55 chrIV:8973721-8973801 0.00014 15_[+1]_57 chrIII:1202337-1202417 0.00014 40_[+1]_32 chrI:11202391-11202471 0.00014 19_[+1]_53 chrV:10717049-10717129 0.00018 [+1]_72 chrV:104662-104742 0.00019 66_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCRC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGCGCRC width=8 seqs=36 chrIII:8794915-8794995 ( 2) GCGCGCGC 1 chrI:14721574-14721654 ( 47) GCGCGCGC 1 chrIII:3916779-3916859 ( 53) GCGCGCGC 1 chrII:8062468-8062548 ( 47) GCGCGCGC 1 chrV:6709220-6709300 ( 20) GCGCGCGC 1 chrV:20852176-20852256 ( 16) GCGCGCGC 1 chrII:7708736-7708816 ( 18) GCGCGCGC 1 chrX:3226954-3227034 ( 63) GCGCGCGC 1 chrIII:10869084-10869164 ( 57) GCGCGCGC 1 chrI:5422313-5422393 ( 60) GCGCGCGC 1 chrIII:3664369-3664449 ( 52) CCGCGCGC 1 chrV:156190-156270 ( 34) CCGCGCGC 1 chrIV:3399256-3399336 ( 64) CCGCGCGC 1 chrIII:5503452-5503532 ( 46) GCGCGCAC 1 chrI:12664996-12665076 ( 47) GCGCGCAC 1 chrI:8223213-8223293 ( 37) CCGCGCAC 1 chrII:4791435-4791515 ( 11) CCGCGCAC 1 chrV:7230998-7231078 ( 38) CCGCGCAC 1 chrI:11323367-11323447 ( 16) GCGCCCGC 1 chrIII:13293237-13293317 ( 27) CCGCACGC 1 chrI:1175837-1175917 ( 43) GCGCCCAC 1 chrX:8556772-8556852 ( 24) GCGCACAC 1 chrIV:1981146-1981226 ( 10) CCGCCCAC 1 chrII:4238067-4238147 ( 59) CCGCCCAC 1 chrIV:9316210-9316290 ( 67) CCGCCCAC 1 chrIII:13720523-13720603 ( 49) GCGCACAC 1 chrIII:11236946-11237026 ( 28) CCGCCCAC 1 chrV:1821441-1821521 ( 38) GCGCACAC 1 chrIV:16863665-16863745 ( 20) CCGCACAC 1 chrX:9296737-9296817 ( 67) CCGCACAC 1 chrV:13962188-13962268 ( 18) GCGCGCGG 1 chrIV:8973721-8973801 ( 16) CCGCGCGG 1 chrIII:1202337-1202417 ( 41) CCGCGCGG 1 chrI:11202391-11202471 ( 20) CCGCGCGG 1 chrV:10717049-10717129 ( 1) CCGCGAGC 1 chrV:104662-104742 ( 67) GCGCGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCRC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 2.0e-009 -1181 101 115 -1181 -1181 209 -1181 -1181 -1181 -1181 207 -1181 -1181 209 -1181 -1181 -63 -49 149 -1181 -222 201 -1181 -1181 78 -1181 122 -1181 -1181 192 -110 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCRC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.0e-009 0.000000 0.472222 0.527778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.166667 0.666667 0.000000 0.055556 0.944444 0.000000 0.000000 0.444444 0.000000 0.555556 0.000000 0.000000 0.888889 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCGCRC MEME-1 regular expression -------------------------------------------------------------------------------- [GC]CGCGC[GA]C -------------------------------------------------------------------------------- Time 5.46 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCGGCR MEME-2 width = 8 sites = 19 llr = 186 E-value = 2.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCGGCR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::4 pos.-specific C 2::a::a: probability G 82a:aa:6 matrix T :8:::::: bits 2.1 ***** 1.9 ***** 1.7 ***** 1.5 * ***** Relative 1.3 ******* Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGCGGCG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGCR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8223213-8223293 12 1.13e-05 gtagggcaat gtgcggcg cgccttttcg chrIII:8768061-8768141 22 1.13e-05 TGAGTAAACT GTGCGGCG TGTTTGCGGA chrI:3873928-3874008 14 1.13e-05 CATGACTTTC gtgcggcg agattgcgaa chrIII:3916779-3916859 31 1.13e-05 CCTAAAGTGT GTGCGGCG ACTTTGCAAA chrV:104662-104742 16 1.13e-05 GAATGTAATG GTGCGGCG CGGTTTTCGG chrII:4238067-4238147 36 1.13e-05 GCGAAAATGC GTGCGGCG CGTTGCAACT chrIV:9316210-9316290 12 1.13e-05 GAATAAAACC GTGCGGCG GAATTGCGAA chrIII:11236946-11237026 2 1.13e-05 T GTGCGGCG GCATTGCCTG chrIV:5371044-5371124 37 2.35e-05 AAATAAAACC GTGCGGCA ACATTGCGAA chrIII:3175124-3175204 37 2.35e-05 TCTTAACTCT GTGCGGCA CCATTGCGGA chrII:5399327-5399407 43 2.35e-05 GCTGCACACT GTGCGGCA CAATTGCGAA chrI:1175837-1175917 19 2.35e-05 CATAAACTCC GTGCGGCA CACTTGCAAA chrI:11579733-11579813 42 3.35e-05 TGAGCTAACC GGGCGGCG ATCACAGTTA chrX:4961751-4961831 56 3.35e-05 ACTGTATGCA GGGCGGCG GTTTCCCTCC chrX:8477586-8477666 34 4.46e-05 AAAGACCATG CTGCGGCG CGAGATGCAG chrI:14101214-14101294 31 4.46e-05 CGTGTTGCAA CTGCGGCG CACTTTTACC chrV:7084906-7084986 56 5.54e-05 CAGGGAAAAA GGGCGGCA ATTCAAAAAA chrX:13675653-13675733 4 5.54e-05 GGC GGGCGGCA ATACCTATTT chrX:17181391-17181471 11 6.74e-05 CCTCTGTTCT CTGCGGCA CCAACActct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGCR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8223213-8223293 1.1e-05 11_[+2]_61 chrIII:8768061-8768141 1.1e-05 21_[+2]_51 chrI:3873928-3874008 1.1e-05 13_[+2]_59 chrIII:3916779-3916859 1.1e-05 30_[+2]_42 chrV:104662-104742 1.1e-05 15_[+2]_57 chrII:4238067-4238147 1.1e-05 35_[+2]_37 chrIV:9316210-9316290 1.1e-05 11_[+2]_61 chrIII:11236946-11237026 1.1e-05 1_[+2]_71 chrIV:5371044-5371124 2.4e-05 36_[+2]_36 chrIII:3175124-3175204 2.4e-05 36_[+2]_36 chrII:5399327-5399407 2.4e-05 42_[+2]_30 chrI:1175837-1175917 2.4e-05 18_[+2]_54 chrI:11579733-11579813 3.3e-05 41_[+2]_31 chrX:4961751-4961831 3.3e-05 55_[+2]_17 chrX:8477586-8477666 4.5e-05 33_[+2]_39 chrI:14101214-14101294 4.5e-05 30_[+2]_42 chrV:7084906-7084986 5.5e-05 55_[+2]_17 chrX:13675653-13675733 5.5e-05 3_[+2]_69 chrX:17181391-17181471 6.7e-05 10_[+2]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGCR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCGGCR width=8 seqs=19 chrI:8223213-8223293 ( 12) GTGCGGCG 1 chrIII:8768061-8768141 ( 22) GTGCGGCG 1 chrI:3873928-3874008 ( 14) GTGCGGCG 1 chrIII:3916779-3916859 ( 31) GTGCGGCG 1 chrV:104662-104742 ( 16) GTGCGGCG 1 chrII:4238067-4238147 ( 36) GTGCGGCG 1 chrIV:9316210-9316290 ( 12) GTGCGGCG 1 chrIII:11236946-11237026 ( 2) GTGCGGCG 1 chrIV:5371044-5371124 ( 37) GTGCGGCA 1 chrIII:3175124-3175204 ( 37) GTGCGGCA 1 chrII:5399327-5399407 ( 43) GTGCGGCA 1 chrI:1175837-1175917 ( 19) GTGCGGCA 1 chrI:11579733-11579813 ( 42) GGGCGGCG 1 chrX:4961751-4961831 ( 56) GGGCGGCG 1 chrX:8477586-8477666 ( 34) CTGCGGCG 1 chrI:14101214-14101294 ( 31) CTGCGGCG 1 chrV:7084906-7084986 ( 56) GGGCGGCA 1 chrX:13675653-13675733 ( 4) GGGCGGCA 1 chrX:17181391-17181471 ( 11) CTGCGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGCR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 2.1e-003 -1089 -57 182 -1089 -1089 -1089 -18 155 -1089 -1089 207 -1089 -1089 209 -1089 -1089 -1089 -1089 207 -1089 -1089 -1089 207 -1089 -1089 209 -1089 -1089 51 -1089 141 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGCR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.1e-003 0.000000 0.157895 0.842105 0.000000 0.000000 0.000000 0.210526 0.789474 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.368421 0.000000 0.631579 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCGGCR MEME-2 regular expression -------------------------------------------------------------------------------- G[TG]GCGGC[GA] -------------------------------------------------------------------------------- Time 9.31 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAW MEME-3 width = 8 sites = 63 llr = 466 E-value = 3.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7778aa85 pos.-specific C :3:::::: probability G 3:3:::2: matrix T :::2:::5 bits 2.1 1.9 ** 1.7 ** 1.5 ** Relative 1.3 **** Entropy 1.0 ******* (10.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus GCG GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10579068-10579148 21 1.96e-05 ACGTCAACGC AAAAAAAA TATTAGCAAG chrII:5057435-5057515 1 1.96e-05 . AAAAAAAA TTTTGCCGCC chrIII:4019898-4019978 3 1.96e-05 GC AAAAAAAA GTAGCGAATG chrIII:13105892-13105972 23 1.96e-05 CTCCCGCCGA AAAAAAAA TAAAAGATTG chrIII:3175124-3175204 5 1.96e-05 CCCC AAAAAAAA ATAAATCCAC chrII:8137441-8137521 37 1.96e-05 AGATTCGCTG AAAAAAAA TGAAGTTGTC chrII:2570633-2570713 33 1.96e-05 AAAAACCGGC AAAAAAAA TCTTTAAAAA chrI:7969011-7969091 67 1.96e-05 CGGAAAGAAG AAAAAAAA GAGAGA chrIII:12673513-12673593 3 1.96e-05 ta aaaaaaaa gaatTGTTTG chrX:8969774-8969854 65 4.02e-05 TCTACCTTTG AAAAAAAT TTATAGGA chrIII:3540563-3540643 3 4.02e-05 TG AAAAAAAT TGGTTGCTAT chrI:6724248-6724328 20 4.02e-05 gaaaattctg aaaaaaat atccgtattt chrII:6734789-6734869 4 4.02e-05 GGC AAAAAAAT ACAGTAACCA chrV:18719649-18719729 5 4.02e-05 GCTG AAAAAAAT GCGCTGAAAA chrIV:15526669-15526749 52 1.13e-04 AATTAAATCG ACAAAAAA TTGAATTTTT chrIII:13225128-13225208 11 1.13e-04 GTAAGTGGAC GAAAAAAT TTTTAAAAAA chrI:289151-289231 70 1.13e-04 TAGAATAGAG AAGAAAAA AGA chrI:6091065-6091145 23 1.13e-04 AATCTGTTTC GAAAAAAT CCAAAAGCGA chrII:5399327-5399407 12 1.13e-04 AATAATTGTT GAAAAAAT ATAATTAAAG chrIII:3476333-3476413 2 1.13e-04 C GAAAAAAT GGGGCGGAGT chrX:4810242-4810322 22 1.13e-04 GGCCGTCGGA ACAAAAAA CAGTAGGGTC chrV:11933469-11933549 19 1.51e-04 AACATTCAAA AAGAAAAT AATTGTAAAA chrIII:8144708-8144788 5 1.51e-04 AAGA AAGAAAAT GTGGGTGAAC chrX:14486525-14486605 9 1.51e-04 ACAAGTAG ACAAAAAT ACTCTTCTTC chrI:6175170-6175250 21 1.51e-04 TAGAGAACAT AAGAAAAT GATTTCTCTA chrIV:14576572-14576652 31 1.51e-04 TTTCTATTAA AAGAAAAT AAAAAAGTAA chrX:4800265-4800345 14 1.51e-04 ACGCACACAC AAGAAAAT AACTATGAAG chrIII:10811219-10811299 48 1.51e-04 TATCTTCTAG AAGAAAAT TTCAAAAATC chrV:7084906-7084986 68 1.69e-04 GCGGCAATTC AAAAAAGA ATAAC chrV:1875902-1875982 46 1.69e-04 TGGTGCCTCG AAAAAAGA TTAAAGGAAC chrX:16275420-16275500 44 1.69e-04 AGGACGACAG AAAAAAGA GTGTGTGGAG chrII:14635302-14635382 23 1.69e-04 GCTGAAAAGC AAAAAAGA ACTGATGAGA chrII:5873845-5873925 49 1.69e-04 TGAAAATGTG AAAAAAGA ATCAAATGAC chrI:1628664-1628744 1 1.88e-04 . AAAAAAGT GTAATAGGAG chrIV:16946855-16946935 40 2.08e-04 ATTCCACGAA AAATAAAA CACGAAAACA chrI:6532044-6532124 1 2.08e-04 . AAATAAAA TCAGAGAAAA chrIV:5371044-5371124 27 2.08e-04 AAAACAGGTA AAATAAAA CCGTGCGGCA chrI:3176615-3176695 73 2.41e-04 GATTGAATTG GCAAAAAA chrV:13962188-13962268 31 2.41e-04 CGCGGCAACT GCAAAAAA GGGCGGAGCC chrIII:8650441-8650521 24 2.41e-04 TGCCCGGCTG GAGAAAAA TGGGGGACTT chrII:5836444-5836524 43 2.41e-04 AACGATTTGT GAGAAAAA TTAGTTGTCT chrII:11694670-11694750 35 2.63e-04 TTATAGTGGT AAATAAAT TCCAAACTAT chrV:14546013-14546093 20 2.63e-04 TTTCGGCGGA AAATAAAT ATTATTTATG chrI:4647204-4647284 17 3.14e-04 TTAAAGGGAG GCAAAAAT TAGGGTATTG chrI:4967494-4967574 16 3.48e-04 TCATTAAAAG ACGAAAAT TTCAATGAAA chrI:11579733-11579813 59 3.99e-04 GATCACAGTT ACAAAAGA GGGTCTAGAG chrI:14721574-14721654 4 3.99e-04 ATG ACAAAAGA TGACAAAAAG chrII:14143959-14144039 37 3.99e-04 AAATTGGAAG AAGAAAGA ACCCGAGGTA chrX:4962525-4962605 2 3.99e-04 G GAAAAAGT ACTTCATTCG chrIII:8874086-8874166 34 4.18e-04 TTAAAAAGGA GAATAAAA GGGTCAGGGA chrIV:9316210-9316290 2 4.18e-04 T GAATAAAA CCGTGCGGCG chrV:11029484-11029564 69 4.52e-04 AATGTACACT ACAAAAGT TGTT chrIII:10817289-10817369 14 5.10e-04 CAGGGATAAC ACATAAAA TCTCGACATt chrV:10717049-10717129 58 5.10e-04 acacatacac acaTAAAA CGCCCTTTGA chrII:14063173-14063253 70 5.64e-04 AGTTTTTTAG AAGTAAAT CTT chrI:933434-933514 5 5.64e-04 GCGA ACATAAAT AATGGGCACA chrV:16022775-16022855 71 5.99e-04 AGGCCATTTG GCGAAAAT CA chrIII:11142232-11142312 13 5.99e-04 TTAACTTTTT GCGAAAAT TCACTTCTAC chrII:4238067-4238147 26 5.99e-04 CGGCACACTT GCGAAAAT GCGTGCGGCG chrX:2885523-2885603 36 6.29e-04 GCAGTGGAAG GAGAAAGA GGAGGACGCT chrX:4802538-4802618 63 6.29e-04 GGTGATTGAT GAGAAAGA ACGACGAGTC chrV:2694587-2694667 11 6.96e-04 GGTACGGTAA GCAAAAGT CCGCAATGCG chrIII:10432263-10432343 49 7.31e-04 CTTGTTTTCC GAGTAAAA TGTCGCTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10579068-10579148 2e-05 20_[+3]_52 chrII:5057435-5057515 2e-05 [+3]_72 chrIII:4019898-4019978 2e-05 2_[+3]_70 chrIII:13105892-13105972 2e-05 22_[+3]_50 chrIII:3175124-3175204 2e-05 4_[+3]_68 chrII:8137441-8137521 2e-05 36_[+3]_36 chrII:2570633-2570713 2e-05 32_[+3]_40 chrI:7969011-7969091 2e-05 66_[+3]_6 chrIII:12673513-12673593 2e-05 2_[+3]_70 chrX:8969774-8969854 4e-05 64_[+3]_8 chrIII:3540563-3540643 4e-05 2_[+3]_70 chrI:6724248-6724328 4e-05 19_[+3]_53 chrII:6734789-6734869 4e-05 3_[+3]_69 chrV:18719649-18719729 4e-05 4_[+3]_68 chrIV:15526669-15526749 0.00011 51_[+3]_21 chrIII:13225128-13225208 0.00011 10_[+3]_62 chrI:289151-289231 0.00011 69_[+3]_3 chrI:6091065-6091145 0.00011 22_[+3]_50 chrII:5399327-5399407 0.00011 11_[+3]_61 chrIII:3476333-3476413 0.00011 1_[+3]_71 chrX:4810242-4810322 0.00011 21_[+3]_51 chrV:11933469-11933549 0.00015 18_[+3]_54 chrIII:8144708-8144788 0.00015 4_[+3]_68 chrX:14486525-14486605 0.00015 8_[+3]_64 chrI:6175170-6175250 0.00015 20_[+3]_52 chrIV:14576572-14576652 0.00015 30_[+3]_42 chrX:4800265-4800345 0.00015 13_[+3]_59 chrIII:10811219-10811299 0.00015 47_[+3]_25 chrV:7084906-7084986 0.00017 67_[+3]_5 chrV:1875902-1875982 0.00017 45_[+3]_27 chrX:16275420-16275500 0.00017 43_[+3]_29 chrII:14635302-14635382 0.00017 22_[+3]_50 chrII:5873845-5873925 0.00017 48_[+3]_24 chrI:1628664-1628744 0.00019 [+3]_72 chrIV:16946855-16946935 0.00021 39_[+3]_33 chrI:6532044-6532124 0.00021 [+3]_72 chrIV:5371044-5371124 0.00021 26_[+3]_46 chrI:3176615-3176695 0.00024 72_[+3] chrV:13962188-13962268 0.00024 30_[+3]_42 chrIII:8650441-8650521 0.00024 23_[+3]_49 chrII:5836444-5836524 0.00024 42_[+3]_30 chrII:11694670-11694750 0.00026 34_[+3]_38 chrV:14546013-14546093 0.00026 19_[+3]_53 chrI:4647204-4647284 0.00031 16_[+3]_56 chrI:4967494-4967574 0.00035 15_[+3]_57 chrI:11579733-11579813 0.0004 58_[+3]_14 chrI:14721574-14721654 0.0004 3_[+3]_69 chrII:14143959-14144039 0.0004 36_[+3]_36 chrX:4962525-4962605 0.0004 1_[+3]_71 chrIII:8874086-8874166 0.00042 33_[+3]_39 chrIV:9316210-9316290 0.00042 1_[+3]_71 chrV:11029484-11029564 0.00045 68_[+3]_4 chrIII:10817289-10817369 0.00051 13_[+3]_59 chrV:10717049-10717129 0.00051 57_[+3]_15 chrII:14063173-14063253 0.00056 69_[+3]_3 chrI:933434-933514 0.00056 4_[+3]_68 chrV:16022775-16022855 0.0006 70_[+3]_2 chrIII:11142232-11142312 0.0006 12_[+3]_60 chrII:4238067-4238147 0.0006 25_[+3]_47 chrX:2885523-2885603 0.00063 35_[+3]_37 chrX:4802538-4802618 0.00063 62_[+3]_10 chrV:2694587-2694667 0.0007 10_[+3]_62 chrIII:10432263-10432343 0.00073 48_[+3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAW width=8 seqs=63 chrV:10579068-10579148 ( 21) AAAAAAAA 1 chrII:5057435-5057515 ( 1) AAAAAAAA 1 chrIII:4019898-4019978 ( 3) AAAAAAAA 1 chrIII:13105892-13105972 ( 23) AAAAAAAA 1 chrIII:3175124-3175204 ( 5) AAAAAAAA 1 chrII:8137441-8137521 ( 37) AAAAAAAA 1 chrII:2570633-2570713 ( 33) AAAAAAAA 1 chrI:7969011-7969091 ( 67) AAAAAAAA 1 chrIII:12673513-12673593 ( 3) AAAAAAAA 1 chrX:8969774-8969854 ( 65) AAAAAAAT 1 chrIII:3540563-3540643 ( 3) AAAAAAAT 1 chrI:6724248-6724328 ( 20) AAAAAAAT 1 chrII:6734789-6734869 ( 4) AAAAAAAT 1 chrV:18719649-18719729 ( 5) AAAAAAAT 1 chrIV:15526669-15526749 ( 52) ACAAAAAA 1 chrIII:13225128-13225208 ( 11) GAAAAAAT 1 chrI:289151-289231 ( 70) AAGAAAAA 1 chrI:6091065-6091145 ( 23) GAAAAAAT 1 chrII:5399327-5399407 ( 12) GAAAAAAT 1 chrIII:3476333-3476413 ( 2) GAAAAAAT 1 chrX:4810242-4810322 ( 22) ACAAAAAA 1 chrV:11933469-11933549 ( 19) AAGAAAAT 1 chrIII:8144708-8144788 ( 5) AAGAAAAT 1 chrX:14486525-14486605 ( 9) ACAAAAAT 1 chrI:6175170-6175250 ( 21) AAGAAAAT 1 chrIV:14576572-14576652 ( 31) AAGAAAAT 1 chrX:4800265-4800345 ( 14) AAGAAAAT 1 chrIII:10811219-10811299 ( 48) AAGAAAAT 1 chrV:7084906-7084986 ( 68) AAAAAAGA 1 chrV:1875902-1875982 ( 46) AAAAAAGA 1 chrX:16275420-16275500 ( 44) AAAAAAGA 1 chrII:14635302-14635382 ( 23) AAAAAAGA 1 chrII:5873845-5873925 ( 49) AAAAAAGA 1 chrI:1628664-1628744 ( 1) AAAAAAGT 1 chrIV:16946855-16946935 ( 40) AAATAAAA 1 chrI:6532044-6532124 ( 1) AAATAAAA 1 chrIV:5371044-5371124 ( 27) AAATAAAA 1 chrI:3176615-3176695 ( 73) GCAAAAAA 1 chrV:13962188-13962268 ( 31) GCAAAAAA 1 chrIII:8650441-8650521 ( 24) GAGAAAAA 1 chrII:5836444-5836524 ( 43) GAGAAAAA 1 chrII:11694670-11694750 ( 35) AAATAAAT 1 chrV:14546013-14546093 ( 20) AAATAAAT 1 chrI:4647204-4647284 ( 17) GCAAAAAT 1 chrI:4967494-4967574 ( 16) ACGAAAAT 1 chrI:11579733-11579813 ( 59) ACAAAAGA 1 chrI:14721574-14721654 ( 4) ACAAAAGA 1 chrII:14143959-14144039 ( 37) AAGAAAGA 1 chrX:4962525-4962605 ( 2) GAAAAAGT 1 chrIII:8874086-8874166 ( 34) GAATAAAA 1 chrIV:9316210-9316290 ( 2) GAATAAAA 1 chrV:11029484-11029564 ( 69) ACAAAAGT 1 chrIII:10817289-10817369 ( 14) ACATAAAA 1 chrV:10717049-10717129 ( 58) ACATAAAA 1 chrII:14063173-14063253 ( 70) AAGTAAAT 1 chrI:933434-933514 ( 5) ACATAAAT 1 chrV:16022775-16022855 ( 71) GCGAAAAT 1 chrIII:11142232-11142312 ( 13) GCGAAAAT 1 chrII:4238067-4238147 ( 26) GCGAAAAT 1 chrX:2885523-2885603 ( 36) GAGAAAGA 1 chrX:4802538-4802618 ( 63) GAGAAAGA 1 chrV:2694587-2694667 ( 11) GCAAAAGT 1 chrIII:10432263-10432343 ( 49) GAGTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.48684 E= 3.6e-005 143 -1262 34 -1262 150 20 -1262 -1262 147 -1262 26 -1262 165 -1262 -1262 -50 195 -1262 -1262 -1262 195 -1262 -1262 -1262 159 -1262 -10 -1262 106 -1262 -1262 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 3.6e-005 0.698413 0.000000 0.301587 0.000000 0.730159 0.269841 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.809524 0.000000 0.000000 0.190476 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.000000 0.222222 0.000000 0.539683 0.000000 0.000000 0.460317 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAW MEME-3 regular expression -------------------------------------------------------------------------------- [AG][AC][AG]AAA[AG][AT] -------------------------------------------------------------------------------- Time 13.91 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTKCGRA MEME-4 width = 8 sites = 56 llr = 415 E-value = 3.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTKCGRA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4::::339 pos.-specific C :::1a:2: probability G :::6:851 matrix T 6aa4:::: bits 2.1 * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** ** * Entropy 1.0 ** ** * (10.7 bits) 0.8 *** ** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGCGGA consensus A T AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCGRA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10651739-10651819 8 1.60e-05 CAGATTG TTTGCGGA GCAGCAAGAC chrIII:11317213-11317293 12 1.60e-05 CGTGACGGTG TTTGCGGA GTTGGGCGCT chrIII:8768061-8768141 32 1.60e-05 GTGCGGCGTG TTTGCGGA AATCGCGTGC chrII:13976313-13976393 31 1.60e-05 GGGTGTGATG TTTGCGGA CAGCGGGGTG chrIII:1202337-1202417 33 1.60e-05 GGGTTCGGTG TTTGCGGA CCGCGCGGTG chrIV:5848141-5848221 36 1.60e-05 GCTCACGGTG TTTGCGGA CTTTGACAAT chrX:8477586-8477666 63 3.13e-05 GTGAGGAAAT ATTGCGGA GACCAATTGG chrIII:3324104-3324184 38 3.13e-05 GTGACGACAA ATTGCGGA CTTTAGGAAT chrI:289151-289231 32 3.13e-05 CCTACGACAA ATTGCGGA CTTTTTTGTT chrI:2485592-2485672 73 3.13e-05 gtcacgccaa attgcgga chrIII:3175124-3175204 47 3.13e-05 GTGCGGCACC ATTGCGGA ACACCGTGCC chrII:9054812-9054892 43 6.69e-05 AAATGTTCGT TTTTCGGA TTCGTTCCAA chrV:104662-104742 27 6.69e-05 TGCGGCGCGG TTTTCGGA GTGTCGTAGC chrII:3502781-3502861 70 1.01e-04 TCCGCGCTCC ATTGCGAA TAT chrI:3176615-3176695 57 1.01e-04 TTTTGCTAAC ATTTCGGA TTGAATTGGC chrI:3873928-3874008 24 1.01e-04 gtgcggcgag attgcgaa taggcgcgcc chrIV:5371044-5371124 47 1.01e-04 GTGCGGCAAC ATTGCGAA AACGCGTGCC chrIV:9316210-9316290 22 1.01e-04 GTGCGGCGGA ATTGCGAA AGCATGCGCC chrII:5399327-5399407 53 1.01e-04 GTGCGGCACA ATTGCGAA AAAGCGGGCC chrV:177134-177214 40 1.36e-04 TTCATAGTTT TTTTCGAA ATTGAAGCTT chrIII:11290662-11290742 34 1.36e-04 AAACCCTCAT TTTTCGAA ATATCCTTGT chrV:14689522-14689602 49 1.54e-04 GACTGTAGAG TTTGCAGA TATCCTTAGG chrIII:640647-640727 44 1.54e-04 TTTTCCTTTT TTTGCAGA TTTTCCAATT chrV:16553070-16553150 67 1.54e-04 AGATCCCCTT TTTGCAGA TCCCCT chrIII:13293237-13293317 71 1.88e-04 ccaacaggaa atttcgaa cg chrI:14070969-14071049 1 1.88e-04 . ATTTCGAA TTCTTGTCTT chrIII:10432263-10432343 9 1.88e-04 CTCAAGAG ATTGCGCA CAAGTGGCTC chrI:8223213-8223293 24 2.22e-04 gcggcgcgcc ttttcgca agccgccgcg chrI:14721574-14721654 57 2.22e-04 GCGCGCGCGG TTTTCGCA ATATCGCCGC chrIII:6551688-6551768 60 2.22e-04 GTATCTCCCC TTTTCGCA GATCCCCTTT chrIV:255642-255722 30 2.22e-04 AGTCCGCTCC ATTGCAGA GAACTTTAAG chrV:6709220-6709300 32 2.22e-04 GCGCGCGCGT TTTTCGCA ACGCCACCGC chrV:1821441-1821521 26 2.22e-04 GCGGCACGCG TTTTCGCA ATCTGCGCAC chrV:12637397-12637477 70 2.61e-04 TTCTCTGATC TTTGCAAA CAC chrI:11323367-11323447 2 2.61e-04 G TTTGCAAA TATCGCGCGC chrIII:3916779-3916859 41 2.61e-04 GTGCGGCGAC TTTGCAAA CACTGCGCGC chrV:3587818-3587898 7 2.78e-04 CGCGCG ATTTCGCA ACTCCGCCGC chrIII:3664369-3664449 60 2.78e-04 CGCCGCGCGC ATTTCGCA ACGCTGCCGC chrII:4942516-4942596 71 3.45e-04 CCGTGCATCA TTTGCGGG CC chrIV:16863665-16863745 55 3.45e-04 GTCATTGTTT TTTGCGGG AAATCTTTGG chrIV:1981146-1981226 62 3.45e-04 TTAGAGTGTT TTTGCGGG AAAATCACTG chrI:1416031-1416111 15 3.45e-04 GTGCAAAACA ATTTCAGA TTGTTTGTCA chrIV:2993440-2993520 42 3.45e-04 CTCTACACTA TTTCCGGA tgtgtgtgtg chrII:5873845-5873925 31 3.45e-04 TTTCTGTCTT TTTCCGGA TGAAAATGTG chrI:10026059-10026139 45 3.83e-04 CTACTGCCAA TTTTCAAA AACGGAATTC chrX:4800265-4800345 58 3.83e-04 GGATCGTCAT TTTTCAAA ATAGATGAGC chrV:14546013-14546093 67 3.83e-04 AAAGGGCGCA TTTGCACA CGCAAG chrI:2487874-2487954 69 4.13e-04 ATCTTGTGGA ATTCCGGA TCTG chrIII:8794915-8794995 71 4.99e-04 GCGCGCTTCG ATTTCAAA TA chrI:1034352-1034432 13 4.99e-04 GAGTGTTCAA ATTTCAAA TCTCCCTCGC chrIII:10904043-10904123 12 4.99e-04 TCCGGAAATG TTTGCGAG AAGAAGTTCG chrIII:640444-640524 2 4.99e-04 G TTTCCGAA TGTCACAGTA chrIV:3399256-3399336 38 4.99e-04 GCGACGCCAT ATTGCACA CATTTTTCGA chrX:3226954-3227034 22 4.99e-04 TCAGTTGGAA TTTTCGGG GAGTGAGAGA chrIV:14496551-14496631 11 5.66e-04 AGGGATTGGA ATTTCGGG ATCGCGGCGA chrIII:13182168-13182248 23 8.44e-04 AAGGAAAAGC TTTGCGGC TATCCGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCGRA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10651739-10651819 1.6e-05 7_[+4]_65 chrIII:11317213-11317293 1.6e-05 11_[+4]_61 chrIII:8768061-8768141 1.6e-05 31_[+4]_41 chrII:13976313-13976393 1.6e-05 30_[+4]_42 chrIII:1202337-1202417 1.6e-05 32_[+4]_40 chrIV:5848141-5848221 1.6e-05 35_[+4]_37 chrX:8477586-8477666 3.1e-05 62_[+4]_10 chrIII:3324104-3324184 3.1e-05 37_[+4]_35 chrI:289151-289231 3.1e-05 31_[+4]_41 chrI:2485592-2485672 3.1e-05 72_[+4] chrIII:3175124-3175204 3.1e-05 46_[+4]_26 chrII:9054812-9054892 6.7e-05 42_[+4]_30 chrV:104662-104742 6.7e-05 26_[+4]_46 chrII:3502781-3502861 0.0001 69_[+4]_3 chrI:3176615-3176695 0.0001 56_[+4]_16 chrI:3873928-3874008 0.0001 23_[+4]_49 chrIV:5371044-5371124 0.0001 46_[+4]_26 chrIV:9316210-9316290 0.0001 21_[+4]_51 chrII:5399327-5399407 0.0001 52_[+4]_20 chrV:177134-177214 0.00014 39_[+4]_33 chrIII:11290662-11290742 0.00014 33_[+4]_39 chrV:14689522-14689602 0.00015 48_[+4]_24 chrIII:640647-640727 0.00015 43_[+4]_29 chrV:16553070-16553150 0.00015 66_[+4]_6 chrIII:13293237-13293317 0.00019 70_[+4]_2 chrI:14070969-14071049 0.00019 [+4]_72 chrIII:10432263-10432343 0.00019 8_[+4]_64 chrI:8223213-8223293 0.00022 23_[+4]_49 chrI:14721574-14721654 0.00022 56_[+4]_16 chrIII:6551688-6551768 0.00022 59_[+4]_13 chrIV:255642-255722 0.00022 29_[+4]_43 chrV:6709220-6709300 0.00022 31_[+4]_41 chrV:1821441-1821521 0.00022 25_[+4]_47 chrV:12637397-12637477 0.00026 69_[+4]_3 chrI:11323367-11323447 0.00026 1_[+4]_71 chrIII:3916779-3916859 0.00026 40_[+4]_32 chrV:3587818-3587898 0.00028 6_[+4]_66 chrIII:3664369-3664449 0.00028 59_[+4]_13 chrII:4942516-4942596 0.00034 70_[+4]_2 chrIV:16863665-16863745 0.00034 54_[+4]_18 chrIV:1981146-1981226 0.00034 61_[+4]_11 chrI:1416031-1416111 0.00034 14_[+4]_58 chrIV:2993440-2993520 0.00034 41_[+4]_31 chrII:5873845-5873925 0.00034 30_[+4]_42 chrI:10026059-10026139 0.00038 44_[+4]_28 chrX:4800265-4800345 0.00038 57_[+4]_15 chrV:14546013-14546093 0.00038 66_[+4]_6 chrI:2487874-2487954 0.00041 68_[+4]_4 chrIII:8794915-8794995 0.0005 70_[+4]_2 chrI:1034352-1034432 0.0005 12_[+4]_60 chrIII:10904043-10904123 0.0005 11_[+4]_61 chrIII:640444-640524 0.0005 1_[+4]_71 chrIV:3399256-3399336 0.0005 37_[+4]_35 chrX:3226954-3227034 0.0005 21_[+4]_51 chrIV:14496551-14496631 0.00057 10_[+4]_62 chrIII:13182168-13182248 0.00084 22_[+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCGRA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTKCGRA width=8 seqs=56 chrIII:10651739-10651819 ( 8) TTTGCGGA 1 chrIII:11317213-11317293 ( 12) TTTGCGGA 1 chrIII:8768061-8768141 ( 32) TTTGCGGA 1 chrII:13976313-13976393 ( 31) TTTGCGGA 1 chrIII:1202337-1202417 ( 33) TTTGCGGA 1 chrIV:5848141-5848221 ( 36) TTTGCGGA 1 chrX:8477586-8477666 ( 63) ATTGCGGA 1 chrIII:3324104-3324184 ( 38) ATTGCGGA 1 chrI:289151-289231 ( 32) ATTGCGGA 1 chrI:2485592-2485672 ( 73) ATTGCGGA 1 chrIII:3175124-3175204 ( 47) ATTGCGGA 1 chrII:9054812-9054892 ( 43) TTTTCGGA 1 chrV:104662-104742 ( 27) TTTTCGGA 1 chrII:3502781-3502861 ( 70) ATTGCGAA 1 chrI:3176615-3176695 ( 57) ATTTCGGA 1 chrI:3873928-3874008 ( 24) ATTGCGAA 1 chrIV:5371044-5371124 ( 47) ATTGCGAA 1 chrIV:9316210-9316290 ( 22) ATTGCGAA 1 chrII:5399327-5399407 ( 53) ATTGCGAA 1 chrV:177134-177214 ( 40) TTTTCGAA 1 chrIII:11290662-11290742 ( 34) TTTTCGAA 1 chrV:14689522-14689602 ( 49) TTTGCAGA 1 chrIII:640647-640727 ( 44) TTTGCAGA 1 chrV:16553070-16553150 ( 67) TTTGCAGA 1 chrIII:13293237-13293317 ( 71) ATTTCGAA 1 chrI:14070969-14071049 ( 1) ATTTCGAA 1 chrIII:10432263-10432343 ( 9) ATTGCGCA 1 chrI:8223213-8223293 ( 24) TTTTCGCA 1 chrI:14721574-14721654 ( 57) TTTTCGCA 1 chrIII:6551688-6551768 ( 60) TTTTCGCA 1 chrIV:255642-255722 ( 30) ATTGCAGA 1 chrV:6709220-6709300 ( 32) TTTTCGCA 1 chrV:1821441-1821521 ( 26) TTTTCGCA 1 chrV:12637397-12637477 ( 70) TTTGCAAA 1 chrI:11323367-11323447 ( 2) TTTGCAAA 1 chrIII:3916779-3916859 ( 41) TTTGCAAA 1 chrV:3587818-3587898 ( 7) ATTTCGCA 1 chrIII:3664369-3664449 ( 60) ATTTCGCA 1 chrII:4942516-4942596 ( 71) TTTGCGGG 1 chrIV:16863665-16863745 ( 55) TTTGCGGG 1 chrIV:1981146-1981226 ( 62) TTTGCGGG 1 chrI:1416031-1416111 ( 15) ATTTCAGA 1 chrIV:2993440-2993520 ( 42) TTTCCGGA 1 chrII:5873845-5873925 ( 31) TTTCCGGA 1 chrI:10026059-10026139 ( 45) TTTTCAAA 1 chrX:4800265-4800345 ( 58) TTTTCAAA 1 chrV:14546013-14546093 ( 67) TTTGCACA 1 chrI:2487874-2487954 ( 69) ATTCCGGA 1 chrIII:8794915-8794995 ( 71) ATTTCAAA 1 chrI:1034352-1034432 ( 13) ATTTCAAA 1 chrIII:10904043-10904123 ( 12) TTTGCGAG 1 chrIII:640444-640524 ( 2) TTTCCGAA 1 chrIV:3399256-3399336 ( 38) ATTGCACA 1 chrX:3226954-3227034 ( 22) TTTTCGGG 1 chrIV:14496551-14496631 ( 11) ATTTCGGG 1 chrIII:13182168-13182248 ( 23) TTTGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCGRA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.56875 E= 3.0e-001 67 -1245 -1245 113 -1245 -1245 -1245 189 -1245 -1245 -1245 189 -1245 -171 122 48 -1245 209 -1245 -1245 -5 -1245 166 -1245 31 -39 107 -1245 176 -371 -115 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCGRA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 3.0e-001 0.410714 0.000000 0.000000 0.589286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.071429 0.553571 0.375000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.321429 0.178571 0.500000 0.000000 0.875000 0.017857 0.107143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCGRA MEME-4 regular expression -------------------------------------------------------------------------------- [TA]TT[GT]C[GA][GA]A -------------------------------------------------------------------------------- Time 17.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGTCTC MEME-5 width = 8 sites = 9 llr = 100 E-value = 8.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a::a:a probability G :a:a:::: matrix T a:::a:a: bits 2.1 *** * * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6248661-6248741 57 1.43e-05 CCCGCTTTAC TGCGTCTC TCCAACCCGG chrI:1823186-1823266 61 1.43e-05 TTCCAGAACT TGCGTCTC TCGTGAACAA chrI:2011312-2011392 59 1.43e-05 TATATGTGTC TGCGTCTC TACCACGAAT chrI:14070969-14071049 27 1.43e-05 TTTAAATGTC TGCGTCTC ACTATCCCTC chrIII:3271760-3271840 45 1.43e-05 tatatatctc tgcgtctc catcaaacaa chrI:6153615-6153695 18 1.43e-05 AGTACCTATC TGCGTCTC TCTGTCTTCT chrI:2155649-2155729 5 1.43e-05 TATC TGCGTCTC TTCCCATCAA chrV:8785626-8785706 70 1.43e-05 TCCATATTTC TGCGTCTC TCC chrI:13065797-13065877 70 1.43e-05 GTCATAAATC TGCGTCTC CAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6248661-6248741 1.4e-05 56_[+5]_16 chrI:1823186-1823266 1.4e-05 60_[+5]_12 chrI:2011312-2011392 1.4e-05 58_[+5]_14 chrI:14070969-14071049 1.4e-05 26_[+5]_46 chrIII:3271760-3271840 1.4e-05 44_[+5]_28 chrI:6153615-6153695 1.4e-05 17_[+5]_55 chrI:2155649-2155729 1.4e-05 4_[+5]_68 chrV:8785626-8785706 1.4e-05 69_[+5]_3 chrI:13065797-13065877 1.4e-05 69_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGTCTC width=8 seqs=9 chrII:6248661-6248741 ( 57) TGCGTCTC 1 chrI:1823186-1823266 ( 61) TGCGTCTC 1 chrI:2011312-2011392 ( 59) TGCGTCTC 1 chrI:14070969-14071049 ( 27) TGCGTCTC 1 chrIII:3271760-3271840 ( 45) TGCGTCTC 1 chrI:6153615-6153695 ( 18) TGCGTCTC 1 chrI:2155649-2155729 ( 5) TGCGTCTC 1 chrV:8785626-8785706 ( 70) TGCGTCTC 1 chrI:13065797-13065877 ( 70) TGCGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 8.1e+000 -982 -982 -982 189 -982 -982 207 -982 -982 209 -982 -982 -982 -982 207 -982 -982 -982 -982 189 -982 209 -982 -982 -982 -982 -982 189 -982 209 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 8.1e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-5 regular expression -------------------------------------------------------------------------------- TGCGTCTC -------------------------------------------------------------------------------- Time 21.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:12427852-12427932 7.89e-02 80 chrX:4810242-4810322 3.22e-01 80 chrV:265394-265474 3.57e-01 80 chrV:4647976-4648056 1.40e-01 80 chrV:14546013-14546093 9.27e-03 80 chrX:4813372-4813452 4.61e-01 80 chrX:4809421-4809501 7.85e-02 80 chrIII:10811219-10811299 6.50e-03 80 chrIII:10856972-10857052 6.56e-01 80 chrIII:10808062-10808142 4.39e-01 80 chrIII:3499984-3500064 5.31e-01 80 chrIV:1687242-1687322 3.48e-01 80 chrIII:10857831-10857911 6.05e-01 80 chrI:1836518-1836598 5.51e-02 80 chrV:11845021-11845101 5.30e-01 80 chrV:5284426-5284506 9.88e-01 80 chrV:14524335-14524415 7.31e-02 80 chrX:2879860-2879940 8.37e-01 80 chrIV:5848141-5848221 4.68e-02 35_[+4(1.60e-05)]_37 chrIV:8334151-8334231 5.18e-01 80 chrX:13675653-13675733 1.33e-01 3_[+2(5.54e-05)]_69 chrV:16553070-16553150 2.75e-01 80 chrI:6154494-6154574 7.54e-01 80 chrII:9308892-9308972 9.65e-01 80 chrI:13065797-13065877 5.19e-03 69_[+5(1.43e-05)]_3 chrI:5422313-5422393 7.39e-02 57_[+1(9.62e-06)]_15 chrV:1821441-1821521 1.93e-03 80 chrIII:11236946-11237026 5.13e-04 1_[+2(1.13e-05)]_71 chrX:4800265-4800345 1.91e-02 80 chrV:18719649-18719729 1.67e-02 4_[+3(4.02e-05)]_68 chrIV:14576572-14576652 2.45e-01 80 chrII:5873845-5873925 9.95e-03 80 chrIV:10817124-10817204 8.49e-01 80 chrIII:3476333-3476413 7.56e-02 80 chrIV:1549203-1549283 9.94e-01 80 chrI:13421142-13421222 8.57e-01 80 chrIII:10869084-10869164 3.59e-03 56_[+1(9.62e-06)]_16 chrIII:5769883-5769963 3.21e-01 80 chrI:11202391-11202471 5.93e-02 80 chrV:8785626-8785706 2.52e-02 69_[+5(1.43e-05)]_3 chrI:1175837-1175917 1.42e-04 18_[+2(2.35e-05)]_16_[+1(8.95e-05)]_\ 30 chrII:1242591-1242671 9.40e-01 80 chrII:5836444-5836524 3.20e-01 80 chrIII:10432263-10432343 3.17e-02 80 chrIII:12673513-12673593 7.26e-02 1_[+3(1.96e-05)]_71 chrIV:11071028-11071108 1.00e+00 80 chrI:6175170-6175250 8.05e-02 80 chrIII:13720523-13720603 8.19e-02 80 chrX:3226954-3227034 3.60e-03 62_[+1(9.62e-06)]_10 chrI:1575718-1575798 3.69e-01 80 chrV:7230998-7231078 2.47e-02 37_[+1(3.98e-05)]_35 chrX:4265632-4265712 2.62e-01 80 chrI:7969011-7969091 1.20e-01 66_[+3(1.96e-05)]_6 chrIII:11091872-11091952 9.14e-01 80 chrIV:2993440-2993520 5.07e-02 80 chrIV:3399256-3399336 3.62e-03 63_[+1(1.91e-05)]_9 chrII:2570633-2570713 1.96e-01 32_[+3(1.96e-05)]_40 chrI:2155649-2155729 9.26e-02 4_[+5(1.43e-05)]_68 chrII:8039580-8039660 4.00e-01 80 chrI:933434-933514 2.96e-01 80 chrI:7712619-7712699 8.54e-01 80 chrII:8137441-8137521 7.16e-02 36_[+3(1.96e-05)]_36 chrI:9268966-9269046 5.78e-01 80 chrIV:14496551-14496631 2.56e-01 80 chrIII:11290662-11290742 1.25e-01 80 chrII:12042315-12042395 7.07e-01 80 chrII:5399327-5399407 8.47e-06 42_[+2(2.35e-05)]_30 chrIII:3175124-3175204 1.33e-06 4_[+3(1.96e-05)]_24_[+2(2.35e-05)]_\ 2_[+4(3.13e-05)]_26 chrIII:1202337-1202417 2.14e-03 32_[+4(1.60e-05)]_40 chrII:7072737-7072817 5.85e-01 80 chrI:1676636-1676716 9.07e-01 80 chrV:10717049-10717129 2.95e-02 80 chrIII:10818578-10818658 3.70e-01 80 chrIII:12399870-12399950 5.77e-01 80 chrV:156190-156270 1.16e-01 33_[+1(1.91e-05)]_39 chrIII:3664369-3664449 1.67e-03 51_[+1(1.91e-05)]_21 chrX:9296737-9296817 7.89e-02 80 chrIV:9316210-9316290 1.05e-06 11_[+2(1.13e-05)]_61 chrI:10026059-10026139 6.81e-02 80 chrX:9225395-9225475 1.21e-02 80 chrIV:14876795-14876875 7.75e-01 80 chrIV:5371044-5371124 9.74e-05 36_[+2(2.35e-05)]_36 chrII:14528523-14528603 4.57e-01 80 chrI:6532044-6532124 1.05e-02 80 chrIII:8874086-8874166 5.02e-01 80 chrI:6153615-6153695 5.48e-02 17_[+5(1.43e-05)]_55 chrIII:354471-354551 3.71e-01 80 chrI:1416031-1416111 2.78e-01 80 chrIII:640444-640524 3.62e-01 80 chrI:6446680-6446760 5.11e-01 80 chrIII:7198979-7199059 1.10e-01 80 chrII:6734789-6734869 7.60e-02 3_[+3(4.02e-05)]_69 chrI:6724248-6724328 1.93e-01 19_[+3(4.02e-05)]_53 chrII:14635302-14635382 2.99e-01 80 chrV:11239333-11239413 1.72e-01 80 chrX:14486525-14486605 2.31e-01 80 chrIII:3271760-3271840 7.22e-02 44_[+5(1.43e-05)]_28 chrII:7708736-7708816 1.83e-02 17_[+1(9.62e-06)]_55 chrIV:7486361-7486441 1.81e-01 80 chrII:4238067-4238147 1.56e-05 12_[+2(2.35e-05)]_15_[+2(1.13e-05)]_\ 37 chrI:14070969-14071049 5.31e-03 26_[+5(1.43e-05)]_46 chrIV:15289570-15289650 6.26e-01 80 chrV:20852176-20852256 7.35e-02 15_[+1(9.62e-06)]_57 chrIII:1122406-1122486 3.40e-01 80 chrIII:13182168-13182248 7.96e-02 80 chrV:18981160-18981240 8.65e-01 80 chrV:16040593-16040673 4.56e-01 80 chrX:16275420-16275500 1.21e-01 80 chrX:12890274-12890354 2.00e-01 80 chrIII:10904043-10904123 1.71e-01 80 chrI:4967494-4967574 4.74e-01 80 chrI:2485592-2485672 6.33e-03 72_[+4(3.13e-05)] chrIV:1981146-1981226 1.19e-04 80 chrX:13653730-13653810 9.85e-01 80 chrX:8556772-8556852 6.27e-02 80 chrX:13675879-13675959 4.08e-01 80 chrX:4962525-4962605 2.05e-01 80 chrIII:13105892-13105972 8.87e-03 21_[+3(1.96e-05)]_51 chrI:3350081-3350161 8.15e-01 80 chrX:17181391-17181471 2.67e-02 10_[+2(6.74e-05)]_62 chrI:6091065-6091145 4.34e-03 80 chrIII:8650441-8650521 1.28e-01 80 chrI:289151-289231 5.65e-03 31_[+4(3.13e-05)]_41 chrI:7772647-7772727 7.92e-01 80 chrIII:13225128-13225208 1.62e-01 80 chrV:11029484-11029564 5.90e-02 80 chrIII:931564-931644 7.76e-01 80 chrX:4802538-4802618 1.19e-01 80 chrIV:2033184-2033264 4.00e-01 80 chrV:1875902-1875982 1.81e-01 80 chrX:4961751-4961831 1.10e-01 55_[+2(3.35e-05)]_17 chrIV:12428054-12428134 3.96e-01 80 chrX:14115665-14115745 2.57e-01 80 chrII:476192-476272 8.85e-02 80 chrIII:13293237-13293317 1.46e-03 26_[+1(7.92e-05)]_46 chrI:6173299-6173379 6.42e-01 80 chrV:177134-177214 4.70e-01 80 chrV:6709220-6709300 4.15e-03 19_[+1(9.62e-06)]_18_[+1(7.92e-05)]_\ 27 chrV:104662-104742 1.29e-05 15_[+2(1.13e-05)]_3_[+4(6.69e-05)]_\ 46 chrI:2011312-2011392 8.91e-02 58_[+5(1.43e-05)]_14 chrIV:255642-255722 1.97e-02 80 chrIII:3324104-3324184 4.64e-02 37_[+4(3.13e-05)]_35 chrI:14101214-14101294 3.56e-03 30_[+2(4.46e-05)]_42 chrIV:16497839-16497919 7.92e-01 80 chrII:8062468-8062548 2.03e-03 46_[+1(9.62e-06)]_26 chrI:1481421-1481501 8.26e-01 80 chrI:1823186-1823266 1.60e-03 60_[+5(1.43e-05)]_12 chrX:8477586-8477666 1.24e-04 33_[+2(4.46e-05)]_21_[+4(3.13e-05)]_\ 10 chrI:12664996-12665076 2.12e-03 46_[+1(2.95e-05)]_26 chrII:7001521-7001601 1.43e-01 80 chrIII:4019898-4019978 7.86e-02 2_[+3(1.96e-05)]_70 chrIII:3916779-3916859 1.69e-05 30_[+2(1.13e-05)]_14_[+1(9.62e-06)]_\ 20 chrIII:10817289-10817369 1.79e-01 80 chrII:13369446-13369526 5.13e-01 80 chrIV:7488048-7488128 2.53e-01 80 chrI:853261-853341 5.14e-01 80 chrII:4791435-4791515 4.24e-02 10_[+1(3.98e-05)]_62 chrV:7084906-7084986 2.21e-03 55_[+2(5.54e-05)]_17 chrX:2687348-2687428 1.79e-01 80 chrI:6163307-6163387 8.77e-01 80 chrII:10549514-10549594 2.69e-01 80 chrIV:16863665-16863745 1.49e-02 80 chrII:13976313-13976393 4.26e-02 30_[+4(1.60e-05)]_42 chrIII:8144708-8144788 5.06e-02 80 chrI:11910953-11911033 2.07e-01 80 chrI:10642461-10642541 6.22e-01 80 chrIV:5334719-5334799 3.27e-01 80 chrI:3873928-3874008 2.74e-04 13_[+2(1.13e-05)]_59 chrI:4933036-4933116 5.44e-01 80 chrI:11323367-11323447 9.40e-03 15_[+1(4.92e-05)]_57 chrIII:10845012-10845092 1.13e-01 80 chrIV:6646004-6646084 6.69e-01 80 chrI:2487874-2487954 7.25e-02 80 chrIII:6805530-6805610 6.04e-01 80 chrIV:15526669-15526749 6.00e-02 80 chrII:11694670-11694750 1.34e-01 80 chrI:1271071-1271151 1.94e-01 80 chrIII:11142232-11142312 3.41e-02 9_[+4(6.69e-05)]_63 chrV:2694587-2694667 1.11e-01 80 chrI:7715763-7715843 6.09e-01 80 chrIV:8973721-8973801 6.76e-02 80 chrX:3994610-3994690 3.50e-01 80 chrI:1034352-1034432 1.58e-01 80 chrX:17030669-17030749 2.21e-01 80 chrII:6721707-6721787 6.64e-02 80 chrV:12637397-12637477 2.60e-01 80 chrIII:3505338-3505418 2.41e-02 80 chrI:1628664-1628744 9.20e-03 80 chrIII:11093624-11093704 8.18e-01 80 chrV:3587818-3587898 5.18e-02 80 chrV:16022775-16022855 5.50e-02 80 chrI:488386-488466 2.33e-01 80 chrII:14063173-14063253 5.18e-01 80 chrX:9999792-9999872 9.27e-01 80 chrIII:8768061-8768141 2.33e-04 21_[+2(1.13e-05)]_2_[+4(1.60e-05)]_\ 41 chrX:16928301-16928381 3.94e-01 80 chrIII:4912482-4912562 9.31e-01 80 chrI:8125509-8125589 8.96e-01 80 chrIII:6551688-6551768 3.43e-01 80 chrII:8927446-8927526 8.16e-01 80 chrII:14143959-14144039 3.78e-01 80 chrIII:5503452-5503532 1.19e-02 45_[+1(2.95e-05)]_27 chrX:8386239-8386319 4.38e-01 80 chrX:8646444-8646524 7.69e-01 80 chrIII:640647-640727 3.75e-01 80 chrIII:3540563-3540643 6.38e-02 2_[+3(4.02e-05)]_70 chrII:6898194-6898274 3.54e-01 80 chrV:20424477-20424557 6.98e-01 80 chrII:9054812-9054892 5.98e-02 42_[+4(6.69e-05)]_30 chrIII:11317213-11317293 5.05e-02 11_[+4(1.60e-05)]_61 chrII:6248661-6248741 3.72e-02 56_[+5(1.43e-05)]_16 chrV:13962188-13962268 1.84e-03 80 chrII:6565298-6565378 8.00e-01 80 chrI:8329807-8329887 8.26e-01 80 chrIII:10651739-10651819 8.65e-03 7_[+4(1.60e-05)]_65 chrII:6741616-6741696 1.84e-01 80 chrV:19723038-19723118 4.73e-01 80 chrX:16271340-16271420 8.94e-01 80 chrV:1003923-1004003 9.65e-01 80 chrV:14689522-14689602 9.10e-02 80 chrIV:16946855-16946935 2.80e-02 80 chrIV:16490065-16490145 9.03e-01 80 chrX:2885523-2885603 1.86e-01 80 chrI:14721574-14721654 1.75e-04 44_[+1(9.62e-06)]_28 chrII:5057435-5057515 6.09e-03 [+3(1.96e-05)]_72 chrII:13291569-13291649 7.29e-01 80 chrIII:11746910-11746990 6.30e-01 80 chrI:3176615-3176695 2.97e-03 80 chrV:1474654-1474734 4.69e-01 80 chrIV:16776061-16776141 9.59e-01 80 chrX:8969774-8969854 2.22e-02 64_[+3(4.02e-05)]_8 chrIII:9546119-9546199 3.89e-01 80 chrX:5056379-5056459 9.73e-01 80 chrIII:7030566-7030646 4.80e-01 80 chrV:11532113-11532193 8.74e-01 80 chrX:9024442-9024522 3.19e-01 80 chrV:13715457-13715537 8.29e-01 80 chrII:3502781-3502861 3.38e-02 80 chrIII:8794915-8794995 5.97e-03 1_[+1(9.62e-06)]_71 chrII:4942516-4942596 2.39e-02 80 chrI:8223213-8223293 1.51e-05 11_[+2(1.13e-05)]_17_[+1(3.98e-05)]_\ 36 chrIV:11692516-11692596 1.49e-01 80 chrV:11933469-11933549 2.79e-01 80 chrIII:4905482-4905562 6.35e-01 80 chrV:10579068-10579148 3.33e-03 20_[+3(1.96e-05)]_52 chrX:4444268-4444348 3.54e-01 80 chrII:13462058-13462138 5.00e-01 80 chrI:11579733-11579813 1.04e-02 41_[+2(3.35e-05)]_31 chrII:9940581-9940661 3.43e-01 80 chrI:4647204-4647284 4.55e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n04.farnam.hpc.yale.internal ********************************************************************************