********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.
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REFERENCE
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If you use this program in your research, please cite:
Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
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TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-11.fasta
CONTROL SEQUENCES= --none--
ALPHABET= ACGT
Sequence name Weight Length Sequence name Weight Length
------------- ------ ------ ------------- ------ ------
chrX:1345012-1345092 1.0000 80 chrX:16056503-16056583 1.0000 80
chrIII:835911-835991 1.0000 80 chrX:16682024-16682104 1.0000 80
chrX:12363095-12363175 1.0000 80 chrX:5841250-5841330 1.0000 80
chrIII:8874333-8874413 1.0000 80 chrX:5429518-5429598 1.0000 80
chrX:11031243-11031323 1.0000 80 chrV:17093027-17093107 1.0000 80
chrII:6331613-6331693 1.0000 80 chrX:2364784-2364864 1.0000 80
chrX:8036341-8036421 1.0000 80 chrIII:5679095-5679175 1.0000 80
chrX:9465852-9465932 1.0000 80 chrII:11545469-11545549 1.0000 80
chrX:13700815-13700895 1.0000 80 chrX:806660-806740 1.0000 80
chrIII:4475629-4475709 1.0000 80 chrX:11937539-11937619 1.0000 80
chrIV:6323805-6323885 1.0000 80 chrX:1627064-1627144 1.0000 80
chrX:14525867-14525947 1.0000 80
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COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.
command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ztf-11/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ztf-11.fasta
model: mod= zoops nmotifs= 5 evt= inf
objective function: em= E-value of product of p-values
starts= E-value of product of p-values
strands: +
width: minw= 8 maxw= 8
nsites: minsites= 2 maxsites= 23 wnsites= 0.8
theta: spmap= uni spfuzz= 0.5
em: prior= dirichlet b= 0.01 maxiter= 50
distance= 1e-05
trim: wg= 11 ws= 1 endgaps= yes
data: n= 1840 N= 23
sample: seed= 0 hsfrac= 0
searchsize= 1840 norand= no csites= 1000
Letter frequencies in dataset:
A 0.278 C 0.237 G 0.214 T 0.272
Background letter frequencies (from file dataset with add-one prior applied):
A 0.278 C 0.237 G 0.214 T 0.272
Background model order: 0
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MOTIF GCGMAGKG MEME-1 width = 8 sites = 12 llr = 106 E-value = 4.6e-006
********************************************************************************
--------------------------------------------------------------------------------
Motif GCGMAGKG MEME-1 Description
--------------------------------------------------------------------------------
Simplified A 2::4a:1:
pos.-specific C :a:4:2::
probability G 8:a2:86a
matrix T ::::::3:
bits 2.2 * *
2.0 ** *
1.8 ** * *
1.6 *** ** *
Relative 1.3 *** ** *
Entropy 1.1 *** ** *
(12.8 bits) 0.9 *** ****
0.7 *** ****
0.4 ********
0.2 ********
0.0 --------
Multilevel GCGAAGGG
consensus C T
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGMAGKG MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- --------
chrX:806660-806740 14 7.01e-06 TGCGATTATC GCGCAGGG GTGTTTGTTG
chrX:5429518-5429598 72 7.01e-06 ATTAAATTTA GCGCAGGG A
chrX:1345012-1345092 44 7.01e-06 AATGTCATTC GCGCAGGG CAGCTGAGCC
chrX:14525867-14525947 58 1.52e-05 AATAGTCATC GCGAAGGG ACACATTTTG
chrX:1627064-1627144 42 1.52e-05 TTCTCCCATC GCGAAGGG ATACTTTCGC
chrX:9465852-9465932 31 1.52e-05 GAAAATTTAG GCGAAGGG AGAGATACTG
chrIII:4475629-4475709 34 5.67e-05 GGAGCGTCAT GCGGAGTG TATGGCATAC
chrIII:5679095-5679175 62 5.67e-05 AAGACATGCT GCGGAGTG ATACAGAAAC
chrX:11937539-11937619 2 7.49e-05 A ACGCAGGG AAGAGAATTA
chrX:11031243-11031323 45 1.22e-04 TCCTCGTGTC GCGCACTG GATGACCCCC
chrIV:6323805-6323885 41 1.67e-04 CGAGAGGACT ACGAAGTG GCACGCAACG
chrX:12363095-12363175 52 2.50e-04 ATAAGAATAG GCGAACAG TATGTCAATG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGMAGKG MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
chrX:806660-806740 7e-06 13_[+1]_59
chrX:5429518-5429598 7e-06 71_[+1]_1
chrX:1345012-1345092 7e-06 43_[+1]_29
chrX:14525867-14525947 1.5e-05 57_[+1]_15
chrX:1627064-1627144 1.5e-05 41_[+1]_31
chrX:9465852-9465932 1.5e-05 30_[+1]_42
chrIII:4475629-4475709 5.7e-05 33_[+1]_39
chrIII:5679095-5679175 5.7e-05 61_[+1]_11
chrX:11937539-11937619 7.5e-05 1_[+1]_71
chrX:11031243-11031323 0.00012 44_[+1]_28
chrIV:6323805-6323885 0.00017 40_[+1]_32
chrX:12363095-12363175 0.00025 51_[+1]_21
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGMAGKG MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF GCGMAGKG width=8 seqs=12
chrX:806660-806740 ( 14) GCGCAGGG 1
chrX:5429518-5429598 ( 72) GCGCAGGG 1
chrX:1345012-1345092 ( 44) GCGCAGGG 1
chrX:14525867-14525947 ( 58) GCGAAGGG 1
chrX:1627064-1627144 ( 42) GCGAAGGG 1
chrX:9465852-9465932 ( 31) GCGAAGGG 1
chrIII:4475629-4475709 ( 34) GCGGAGTG 1
chrIII:5679095-5679175 ( 62) GCGGAGTG 1
chrX:11937539-11937619 ( 2) ACGCAGGG 1
chrX:11031243-11031323 ( 45) GCGCACTG 1
chrIV:6323805-6323885 ( 41) ACGAAGTG 1
chrX:12363095-12363175 ( 52) GCGAACAG 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGMAGKG MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1679 bayes= 8.70995 E= 4.6e-006
-74 -1023 196 -1023
-1023 208 -1023 -1023
-1023 -1023 223 -1023
59 81 -36 -1023
185 -1023 -1023 -1023
-1023 -51 196 -1023
-173 -1023 145 29
-1023 -1023 223 -1023
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGMAGKG MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.6e-006
0.166667 0.000000 0.833333 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.416667 0.416667 0.166667 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.166667 0.833333 0.000000
0.083333 0.000000 0.583333 0.333333
0.000000 0.000000 1.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGMAGKG MEME-1 regular expression
--------------------------------------------------------------------------------
GCG[AC]AG[GT]G
--------------------------------------------------------------------------------
Time 0.54 secs.
********************************************************************************
********************************************************************************
MOTIF TCMCWRYG MEME-2 width = 8 sites = 13 llr = 98 E-value = 1.7e+001
********************************************************************************
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Motif TCMCWRYG MEME-2 Description
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Simplified A ::3:53::
pos.-specific C :a6a::5:
probability G 2:1::5:a
matrix T 8:::525:
bits 2.2 *
2.0 * * *
1.8 * * *
1.6 * * *
Relative 1.3 * * *
Entropy 1.1 ** * *
(10.8 bits) 0.9 ***** **
0.7 ********
0.4 ********
0.2 ********
0.0 --------
Multilevel TCCCTGTG
consensus G A AAC
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TCMCWRYG MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- --------
chrX:14525867-14525947 32 2.30e-05 ACCACATCTG TCCCTGCG CGATAGGCAA
chrX:8036341-8036421 59 2.30e-05 TCGACATACG TCCCTGCG CGATAAAAAA
chrX:16056503-16056583 29 2.30e-05 AATGTGCAAC TCCCTGCG GCAAATTTGA
chrIII:5679095-5679175 34 1.03e-04 ATAGCACATT TCACTGTG CCGCGACTCA
chrII:6331613-6331693 56 1.03e-04 TGCTGCGTAC TCCCTATG AAAAACGGGA
chrV:17093027-17093107 39 1.79e-04 CATCCTTCCA TCCCAATG CACAAATCAA
chrX:5841250-5841330 40 1.79e-04 CCTTGCCAAC TCACAGTG GTCGACGCGC
chrX:5429518-5429598 38 2.27e-04 TCATCTCGTG TCCCTTCG CCAATGCTTA
chrII:11545469-11545549 13 3.36e-04 GATCGAACAT GCACTGCG CTTCGCGAGT
chrX:16682024-16682104 66 4.38e-04 GCCATATGTT GCCCAATG TTCCTGC
chrIII:835911-835991 1 4.38e-04 . GCCCAATG TGCACCATAA
chrIV:6323805-6323885 67 4.60e-04 CGCTCGGGTC TCGCAGCG ACCTGC
chrX:2364784-2364864 49 5.52e-04 AGTAAGAGAG TCACATTG TATTTTTATT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TCMCWRYG MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
chrX:14525867-14525947 2.3e-05 31_[+2]_41
chrX:8036341-8036421 2.3e-05 58_[+2]_14
chrX:16056503-16056583 2.3e-05 28_[+2]_44
chrIII:5679095-5679175 0.0001 33_[+2]_39
chrII:6331613-6331693 0.0001 55_[+2]_17
chrV:17093027-17093107 0.00018 38_[+2]_34
chrX:5841250-5841330 0.00018 39_[+2]_33
chrX:5429518-5429598 0.00023 37_[+2]_35
chrII:11545469-11545549 0.00034 12_[+2]_60
chrX:16682024-16682104 0.00044 65_[+2]_7
chrIII:835911-835991 0.00044 [+2]_72
chrIV:6323805-6323885 0.00046 66_[+2]_6
chrX:2364784-2364864 0.00055 48_[+2]_24
--------------------------------------------------------------------------------
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Motif TCMCWRYG MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF TCMCWRYG width=8 seqs=13
chrX:14525867-14525947 ( 32) TCCCTGCG 1
chrX:8036341-8036421 ( 59) TCCCTGCG 1
chrX:16056503-16056583 ( 29) TCCCTGCG 1
chrIII:5679095-5679175 ( 34) TCACTGTG 1
chrII:6331613-6331693 ( 56) TCCCTATG 1
chrV:17093027-17093107 ( 39) TCCCAATG 1
chrX:5841250-5841330 ( 40) TCACAGTG 1
chrX:5429518-5429598 ( 38) TCCCTTCG 1
chrII:11545469-11545549 ( 13) GCACTGCG 1
chrX:16682024-16682104 ( 66) GCCCAATG 1
chrIII:835911-835991 ( 1) GCCCAATG 1
chrIV:6323805-6323885 ( 67) TCGCAGCG 1
chrX:2364784-2364864 ( 49) TCACATTG 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TCMCWRYG MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1679 bayes= 8.17234 E= 1.7e+001
-1035 -1035 11 150
-1035 208 -1035 -1035
15 138 -147 -1035
-1035 208 -1035 -1035
73 -1035 -1035 99
15 -1035 133 -82
-1035 96 -1035 99
-1035 -1035 223 -1035
--------------------------------------------------------------------------------
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Motif TCMCWRYG MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.7e+001
0.000000 0.000000 0.230769 0.769231
0.000000 1.000000 0.000000 0.000000
0.307692 0.615385 0.076923 0.000000
0.000000 1.000000 0.000000 0.000000
0.461538 0.000000 0.000000 0.538462
0.307692 0.000000 0.538462 0.153846
0.000000 0.461538 0.000000 0.538462
0.000000 0.000000 1.000000 0.000000
--------------------------------------------------------------------------------
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Motif TCMCWRYG MEME-2 regular expression
--------------------------------------------------------------------------------
[TG]C[CA]C[TA][GA][TC]G
--------------------------------------------------------------------------------
Time 0.92 secs.
********************************************************************************
********************************************************************************
MOTIF STCGTCTC MEME-3 width = 8 sites = 9 llr = 76 E-value = 2.6e+001
********************************************************************************
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Motif STCGTCTC MEME-3 Description
--------------------------------------------------------------------------------
Simplified A 12:1::::
pos.-specific C 4:9::a:a
probability G 4:17::::
matrix T :8:2a:a:
bits 2.2
2.0 * *
1.8 ****
1.6 * ****
Relative 1.3 * ****
Entropy 1.1 ** ****
(12.2 bits) 0.9 *******
0.7 ********
0.4 ********
0.2 ********
0.0 --------
Multilevel CTCGTCTC
consensus GA T
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif STCGTCTC MEME-3 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- --------
chrX:11031243-11031323 68 1.23e-05 CCCCCACACA GTCGTCTC GGTCG
chrIII:8874333-8874413 29 1.23e-05 ACACTCAATC GTCGTCTC CGCAAGGCGA
chrX:13700815-13700895 54 3.84e-05 TCCACAGCAC GACGTCTC CTCTTACTAG
chrV:17093027-17093107 10 6.79e-05 TTTCAGTCC CACGTCTC AATTGCGCCA
chrX:1627064-1627144 29 8.51e-05 ACCCCCTGCC CTCTTCTC CCATCGCGAA
chrII:11545469-11545549 58 8.51e-05 AAGTTCCGCA CTCTTCTC TCTCATGATT
chrX:5841250-5841330 21 1.01e-04 CTTTTGTTTC ATCGTCTC GCCTTGCCAA
chrX:806660-806740 45 1.12e-04 CGTCTCTTGT GTGGTCTC ATCCGATCGC
chrX:5429518-5429598 27 1.58e-04 ATCCAAGAGA CTCATCTC GTGTCCCTTC
--------------------------------------------------------------------------------
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Motif STCGTCTC MEME-3 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
chrX:11031243-11031323 1.2e-05 67_[+3]_5
chrIII:8874333-8874413 1.2e-05 28_[+3]_44
chrX:13700815-13700895 3.8e-05 53_[+3]_19
chrV:17093027-17093107 6.8e-05 9_[+3]_63
chrX:1627064-1627144 8.5e-05 28_[+3]_44
chrII:11545469-11545549 8.5e-05 57_[+3]_15
chrX:5841250-5841330 0.0001 20_[+3]_52
chrX:806660-806740 0.00011 44_[+3]_28
chrX:5429518-5429598 0.00016 26_[+3]_46
--------------------------------------------------------------------------------
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Motif STCGTCTC MEME-3 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF STCGTCTC width=8 seqs=9
chrX:11031243-11031323 ( 68) GTCGTCTC 1
chrIII:8874333-8874413 ( 29) GTCGTCTC 1
chrX:13700815-13700895 ( 54) GACGTCTC 1
chrV:17093027-17093107 ( 10) CACGTCTC 1
chrX:1627064-1627144 ( 29) CTCTTCTC 1
chrII:11545469-11545549 ( 58) CTCTTCTC 1
chrX:5841250-5841330 ( 21) ATCGTCTC 1
chrX:806660-806740 ( 45) GTGGTCTC 1
chrX:5429518-5429598 ( 27) CTCATCTC 1
//
--------------------------------------------------------------------------------
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Motif STCGTCTC MEME-3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1679 bayes= 7.6707 E= 2.6e+001
-132 91 106 -982
-32 -982 -982 152
-982 191 -94 -982
-132 -982 164 -29
-982 -982 -982 188
-982 208 -982 -982
-982 -982 -982 188
-982 208 -982 -982
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif STCGTCTC MEME-3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.6e+001
0.111111 0.444444 0.444444 0.000000
0.222222 0.000000 0.000000 0.777778
0.000000 0.888889 0.111111 0.000000
0.111111 0.000000 0.666667 0.222222
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif STCGTCTC MEME-3 regular expression
--------------------------------------------------------------------------------
[CG][TA]C[GT]TCTC
--------------------------------------------------------------------------------
Time 1.68 secs.
********************************************************************************
********************************************************************************
MOTIF TATCCACA MEME-4 width = 8 sites = 5 llr = 52 E-value = 6.8e+001
********************************************************************************
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Motif TATCCACA MEME-4 Description
--------------------------------------------------------------------------------
Simplified A :8:::a:a
pos.-specific C :::aa:a:
probability G :2::::::
matrix T a:a:::::
bits 2.2
2.0 ** *
1.8 * ******
1.6 * ******
Relative 1.3 * ******
Entropy 1.1 ********
(14.9 bits) 0.9 ********
0.7 ********
0.4 ********
0.2 ********
0.0 --------
Multilevel TATCCACA
consensus G
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TATCCACA MEME-4 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- --------
chrX:13700815-13700895 42 2.12e-05 CGTATACATA TATCCACA GCACGACGTC
chrX:8036341-8036421 38 2.12e-05 CTAATCGAAT TATCCACA GTGTCGACAT
chrX:16056503-16056583 10 2.12e-05 CATATTGAT TATCCACA GAATGTGCAA
chrX:1345012-1345092 25 2.12e-05 CATATACATT TATCCACA CAATGTCATT
chrX:14525867-14525947 11 3.74e-05 GACAGCTGGC TGTCCACA TGTACCACAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TATCCACA MEME-4 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
chrX:13700815-13700895 2.1e-05 41_[+4]_31
chrX:8036341-8036421 2.1e-05 37_[+4]_35
chrX:16056503-16056583 2.1e-05 9_[+4]_63
chrX:1345012-1345092 2.1e-05 24_[+4]_48
chrX:14525867-14525947 3.7e-05 10_[+4]_62
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TATCCACA MEME-4 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF TATCCACA width=8 seqs=5
chrX:13700815-13700895 ( 42) TATCCACA 1
chrX:8036341-8036421 ( 38) TATCCACA 1
chrX:16056503-16056583 ( 10) TATCCACA 1
chrX:1345012-1345092 ( 25) TATCCACA 1
chrX:14525867-14525947 ( 11) TGTCCACA 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TATCCACA MEME-4 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1679 bayes= 8.63938 E= 6.8e+001
-897 -897 -897 188
152 -897 -10 -897
-897 -897 -897 188
-897 207 -897 -897
-897 207 -897 -897
185 -897 -897 -897
-897 207 -897 -897
185 -897 -897 -897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TATCCACA MEME-4 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
0.000000 0.000000 0.000000 1.000000
0.800000 0.000000 0.200000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TATCCACA MEME-4 regular expression
--------------------------------------------------------------------------------
T[AG]TCCACA
--------------------------------------------------------------------------------
Time 5.19 secs.
********************************************************************************
********************************************************************************
MOTIF TGCTGCGT MEME-5 width = 8 sites = 2 llr = 23 E-value = 2.2e+003
********************************************************************************
--------------------------------------------------------------------------------
Motif TGCTGCGT MEME-5 Description
--------------------------------------------------------------------------------
Simplified A ::::::::
pos.-specific C ::a::a::
probability G :a::a:a:
matrix T a::a:::a
bits 2.2 * * *
2.0 ** ***
1.8 ********
1.6 ********
Relative 1.3 ********
Entropy 1.1 ********
(16.5 bits) 0.9 ********
0.7 ********
0.4 ********
0.2 ********
0.0 --------
Multilevel TGCTGCGT
consensus
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TGCTGCGT MEME-5 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- --------
chrX:806660-806740 30 1.11e-05 GGGTGTTTGT TGCTGCGT CTCTTGTGTG
chrII:6331613-6331693 46 1.11e-05 CACAGCGCGA TGCTGCGT ACTCCCTATG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TGCTGCGT MEME-5 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
chrX:806660-806740 1.1e-05 29_[+5]_43
chrII:6331613-6331693 1.1e-05 45_[+5]_27
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TGCTGCGT MEME-5 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF TGCTGCGT width=8 seqs=2
chrX:806660-806740 ( 30) TGCTGCGT 1
chrII:6331613-6331693 ( 46) TGCTGCGT 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TGCTGCGT MEME-5 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1679 bayes= 9.71167 E= 2.2e+003
-765 -765 -765 187
-765 -765 222 -765
-765 207 -765 -765
-765 -765 -765 187
-765 -765 222 -765
-765 207 -765 -765
-765 -765 222 -765
-765 -765 -765 187
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TGCTGCGT MEME-5 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.2e+003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif TGCTGCGT MEME-5 regular expression
--------------------------------------------------------------------------------
TGCTGCGT
--------------------------------------------------------------------------------
Time 9.48 secs.
********************************************************************************
********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************
--------------------------------------------------------------------------------
Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
chrX:1345012-1345092 2.73e-04 24_[+4(2.12e-05)]_11_[+1(7.01e-06)]_\
29
chrX:16056503-16056583 1.97e-03 9_[+4(2.12e-05)]_11_[+2(2.30e-05)]_\
44
chrIII:835911-835991 2.47e-01 80
chrX:16682024-16682104 2.14e-01 80
chrX:12363095-12363175 4.33e-01 80
chrX:5841250-5841330 1.32e-02 80
chrIII:8874333-8874413 1.08e-02 28_[+3(1.23e-05)]_44
chrX:5429518-5429598 9.89e-05 71_[+1(7.01e-06)]_1
chrX:11031243-11031323 1.48e-03 67_[+3(1.23e-05)]_5
chrV:17093027-17093107 1.21e-02 9_[+3(6.79e-05)]_63
chrII:6331613-6331693 2.66e-04 45_[+5(1.11e-05)]_27
chrX:2364784-2364864 6.97e-01 80
chrX:8036341-8036421 1.07e-03 37_[+4(2.12e-05)]_13_[+2(2.30e-05)]_\
14
chrIII:5679095-5679175 2.73e-04 61_[+1(5.67e-05)]_11
chrX:9465852-9465932 3.65e-02 30_[+1(1.52e-05)]_42
chrII:11545469-11545549 1.13e-02 57_[+3(8.51e-05)]_15
chrX:13700815-13700895 2.52e-03 41_[+4(2.12e-05)]_4_[+3(3.84e-05)]_\
19
chrX:806660-806740 9.93e-06 13_[+1(7.01e-06)]_8_[+5(1.11e-05)]_\
43
chrIII:4475629-4475709 4.07e-02 33_[+1(5.67e-05)]_39
chrX:11937539-11937619 2.97e-01 1_[+1(7.49e-05)]_71
chrIV:6323805-6323885 1.35e-02 80
chrX:1627064-1627144 3.04e-04 28_[+3(8.51e-05)]_5_[+1(1.52e-05)]_\
31
chrX:14525867-14525947 4.63e-06 10_[+4(3.74e-05)]_13_[+2(2.30e-05)]_\
18_[+1(1.52e-05)]_15
--------------------------------------------------------------------------------
********************************************************************************
********************************************************************************
Stopped because requested number of motifs (5) found.
********************************************************************************
CPU: c27n08.farnam.hpc.yale.internal
********************************************************************************