******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/zip-5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:17108359-17108439 1.0000 80 chrIV:13487181-13487261 1.0000 80 chrIV:12653246-12653326 1.0000 80 chrIII:11093618-11093698 1.0000 80 chrIII:13474662-13474742 1.0000 80 chrII:8137442-8137522 1.0000 80 chrV:20832717-20832797 1.0000 80 chrI:1280179-1280259 1.0000 80 chrI:13422622-13422702 1.0000 80 chrV:3218740-3218820 1.0000 80 chrV:4536001-4536081 1.0000 80 chrIII:2697387-2697467 1.0000 80 chrV:16553081-16553161 1.0000 80 chrI:2487861-2487941 1.0000 80 chrI:2710621-2710701 1.0000 80 chrIII:9808294-9808374 1.0000 80 chrIV:1687244-1687324 1.0000 80 chrI:636765-636845 1.0000 80 chrV:16746799-16746879 1.0000 80 chrI:1675985-1676065 1.0000 80 chrV:10031922-10032002 1.0000 80 chrV:156206-156286 1.0000 80 chrIII:12218777-12218857 1.0000 80 chrI:10161987-10162067 1.0000 80 chrI:15052749-15052829 1.0000 80 chrIV:11592946-11593026 1.0000 80 chrII:2794515-2794595 1.0000 80 chrI:12899127-12899207 1.0000 80 chrIV:13289508-13289588 1.0000 80 chrV:4181854-4181934 1.0000 80 chrIII:8250382-8250462 1.0000 80 chrIII:11848482-11848562 1.0000 80 chrV:11933477-11933557 1.0000 80 chrI:7251607-7251687 1.0000 80 chrI:2871446-2871526 1.0000 80 chrV:265393-265473 1.0000 80 chrII:5594428-5594508 1.0000 80 chrV:2603178-2603258 1.0000 80 chrII:8137650-8137730 1.0000 80 chrIII:10064305-10064385 1.0000 80 chrIII:12673531-12673611 1.0000 80 chrIII:10856974-10857054 1.0000 80 chrIII:10811068-10811148 1.0000 80 chrIV:12621617-12621697 1.0000 80 chrI:6341920-6342000 1.0000 80 chrI:13421180-13421260 1.0000 80 chrV:16022769-16022849 1.0000 80 chrIV:6747830-6747910 1.0000 80 chrIII:4905573-4905653 1.0000 80 chrI:11222150-11222230 1.0000 80 chrIII:11832798-11832878 1.0000 80 chrII:6097617-6097697 1.0000 80 chrI:13418794-13418874 1.0000 80 chrI:4958847-4958927 1.0000 80 chrI:5659154-5659234 1.0000 80 chrII:2378726-2378806 1.0000 80 chrIV:9797496-9797576 1.0000 80 chrIII:3424100-3424180 1.0000 80 chrIV:4702237-4702317 1.0000 80 chrX:7798503-7798583 1.0000 80 chrIII:7199015-7199095 1.0000 80 chrI:78044-78124 1.0000 80 chrII:5836479-5836559 1.0000 80 chrX:3379228-3379308 1.0000 80 chrX:7569782-7569862 1.0000 80 chrIII:3476409-3476489 1.0000 80 chrII:13279413-13279493 1.0000 80 chrI:3176561-3176641 1.0000 80 chrI:8125468-8125548 1.0000 80 chrII:7857670-7857750 1.0000 80 chrI:5118891-5118971 1.0000 80 chrI:7676275-7676355 1.0000 80 chrII:5873909-5873989 1.0000 80 chrM:3596-3676 1.0000 80 chrI:6760295-6760375 1.0000 80 chrIII:8144720-8144800 1.0000 80 chrIII:7858574-7858654 1.0000 80 chrI:4215773-4215853 1.0000 80 chrIII:3499984-3500064 1.0000 80 chrII:14857069-14857149 1.0000 80 chrI:8255094-8255174 1.0000 80 chrV:10320322-10320402 1.0000 80 chrIII:13293143-13293223 1.0000 80 chrIV:17099300-17099380 1.0000 80 chrIII:9465615-9465695 1.0000 80 chrIII:4862092-4862172 1.0000 80 chrII:7122966-7123046 1.0000 80 chrIV:5371083-5371163 1.0000 80 chrII:15089601-15089681 1.0000 80 chrI:2144111-2144191 1.0000 80 chrIV:12621821-12621901 1.0000 80 chrIII:4196745-4196825 1.0000 80 chrM:10194-10274 1.0000 80 chrII:3482360-3482440 1.0000 80 chrII:1500517-1500597 1.0000 80 chrIV:11315059-11315139 1.0000 80 chrIII:11286261-11286341 1.0000 80 chrV:7084916-7084996 1.0000 80 chrX:9917541-9917621 1.0000 80 chrII:484524-484604 1.0000 80 chrM:10832-10912 1.0000 80 chrII:6741560-6741640 1.0000 80 chrI:1213541-1213621 1.0000 80 chrI:2571146-2571226 1.0000 80 chrV:14423443-14423523 1.0000 80 chrIV:12490233-12490313 1.0000 80 chrIV:7816583-7816663 1.0000 80 chrI:9393800-9393880 1.0000 80 chrI:12899351-12899431 1.0000 80 chrV:2697827-2697907 1.0000 80 chrIII:10811276-10811356 1.0000 80 chrIV:16944511-16944591 1.0000 80 chrII:7072782-7072862 1.0000 80 chrI:3636620-3636700 1.0000 80 chrI:5281810-5281890 1.0000 80 chrI:4967577-4967657 1.0000 80 chrIV:11635795-11635875 1.0000 80 chrI:10469098-10469178 1.0000 80 chrII:6734825-6734905 1.0000 80 chrIII:1540282-1540362 1.0000 80 chrIII:11091793-11091873 1.0000 80 chrV:6107626-6107706 1.0000 80 chrI:6252933-6253013 1.0000 80 chrIII:13187897-13187977 1.0000 80 chrM:1835-1915 1.0000 80 chrII:476162-476242 1.0000 80 chrIV:12094011-12094091 1.0000 80 chrI:15014028-15014108 1.0000 80 chrV:14443595-14443675 1.0000 80 chrIII:3540581-3540661 1.0000 80 chrIV:4042451-4042531 1.0000 80 chrII:8039578-8039658 1.0000 80 chrV:15082440-15082520 1.0000 80 chrM:2985-3065 1.0000 80 chrIV:16995584-16995664 1.0000 80 chrIII:5190324-5190404 1.0000 80 chrIII:4343301-4343381 1.0000 80 chrII:13117261-13117341 1.0000 80 chrII:10538114-10538194 1.0000 80 chrIII:8850827-8850907 1.0000 80 chrV:11029444-11029524 1.0000 80 chrI:6407343-6407423 1.0000 80 chrIV:3803406-3803486 1.0000 80 chrV:10441239-10441319 1.0000 80 chrI:853252-853332 1.0000 80 chrV:20090819-20090899 1.0000 80 chrIV:11635994-11636074 1.0000 80 chrV:14443841-14443921 1.0000 80 chrIV:8973673-8973753 1.0000 80 chrII:4791435-4791515 1.0000 80 chrIII:8967800-8967880 1.0000 80 chrI:402985-403065 1.0000 80 chrV:20424932-20425012 1.0000 80 chrI:14756441-14756521 1.0000 80 chrII:1134526-1134606 1.0000 80 chrII:2752707-2752787 1.0000 80 chrV:18981157-18981237 1.0000 80 chrIV:4712595-4712675 1.0000 80 chrI:3350089-3350169 1.0000 80 chrII:10200912-10200992 1.0000 80 chrII:8297404-8297484 1.0000 80 chrIV:12559180-12559260 1.0000 80 chrX:9296724-9296804 1.0000 80 chrI:12773350-12773430 1.0000 80 chrII:12042384-12042464 1.0000 80 chrX:16376145-16376225 1.0000 80 chrI:7003577-7003657 1.0000 80 chrM:7274-7354 1.0000 80 chrIV:9858272-9858352 1.0000 80 chrI:9064807-9064887 1.0000 80 chrIV:6632001-6632081 1.0000 80 chrIV:3899985-3900065 1.0000 80 chrIII:4912482-4912562 1.0000 80 chrI:479587-479667 1.0000 80 chrIV:10085847-10085927 1.0000 80 chrI:13422824-13422904 1.0000 80 chrIV:7948496-7948576 1.0000 80 chrII:4993948-4994028 1.0000 80 chrI:10026024-10026104 1.0000 80 chrIII:11833995-11834075 1.0000 80 chrIII:5308377-5308457 1.0000 80 chrII:15119855-15119935 1.0000 80 chrI:1034324-1034404 1.0000 80 chrII:4603196-4603276 1.0000 80 chrII:5819839-5819919 1.0000 80 chrV:14133113-14133193 1.0000 80 chrI:13470405-13470485 1.0000 80 chrIII:640531-640611 1.0000 80 chrIII:5068943-5069023 1.0000 80 chrIV:2033186-2033266 1.0000 80 chrM:9118-9198 1.0000 80 chrX:4961659-4961739 1.0000 80 chrI:13835183-13835263 1.0000 80 chrII:14480103-14480183 1.0000 80 chrI:8511431-8511511 1.0000 80 chrI:4769367-4769447 1.0000 80 chrIV:1687445-1687525 1.0000 80 chrV:9583082-9583162 1.0000 80 chrIV:12617488-12617568 1.0000 80 chrIV:4070925-4071005 1.0000 80 chrII:14528450-14528530 1.0000 80 chrIV:1347158-1347238 1.0000 80 chrM:6026-6106 1.0000 80 chrI:4959071-4959151 1.0000 80 chrI:6460656-6460736 1.0000 80 chrIV:16494612-16494692 1.0000 80 chrM:8294-8374 1.0000 80 chrII:8062395-8062475 1.0000 80 chrII:6776788-6776868 1.0000 80 chrI:1415969-1416049 1.0000 80 chrIII:7088082-7088162 1.0000 80 chrIII:11746879-11746959 1.0000 80 chrIV:3988769-3988849 1.0000 80 chrIII:9868266-9868346 1.0000 80 chrI:27072-27152 1.0000 80 chrI:7772577-7772657 1.0000 80 chrM:4605-4685 1.0000 80 chrIII:11093820-11093900 1.0000 80 chrIV:410642-410722 1.0000 80 chrIII:5102775-5102855 1.0000 80 chrIII:8700736-8700816 1.0000 80 chrIII:5803104-5803184 1.0000 80 chrV:10356096-10356176 1.0000 80 chrII:6383360-6383440 1.0000 80 chrIII:10123785-10123865 1.0000 80 chrIV:12268715-12268795 1.0000 80 chrII:2991856-2991936 1.0000 80 chrV:14425267-14425347 1.0000 80 chrIII:12218978-12219058 1.0000 80 chrV:5917845-5917925 1.0000 80 chrI:10642454-10642534 1.0000 80 chrII:9591249-9591329 1.0000 80 chrI:4247555-4247635 1.0000 80 chrI:5165021-5165101 1.0000 80 chrV:11124099-11124179 1.0000 80 chrV:1875722-1875802 1.0000 80 chrII:8516912-8516992 1.0000 80 chrIII:3322694-3322774 1.0000 80 chrII:6061653-6061733 1.0000 80 chrI:10807446-10807526 1.0000 80 chrI:1175803-1175883 1.0000 80 chrV:2127164-2127244 1.0000 80 chrIII:11142229-11142309 1.0000 80 chrV:16401680-16401760 1.0000 80 chrIII:6013150-6013230 1.0000 80 chrII:8325343-8325423 1.0000 80 chrV:13409218-13409298 1.0000 80 chrV:18710198-18710278 1.0000 80 chrIII:4930442-4930522 1.0000 80 chrV:10178274-10178354 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_zip-5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/zip-5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.287 C 0.214 G 0.214 T 0.285 Background letter frequencies (from file dataset with add-one prior applied): A 0.287 C 0.214 G 0.214 T 0.285 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGGCCRMG MEME-1 width = 8 sites = 82 llr = 705 E-value = 9.1e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGCCRMG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::33: pos.-specific C 4::aa:5: probability G :aa::5:a matrix T 5::::22: bits 2.2 **** 2.0 **** * 1.8 **** * 1.6 **** * Relative 1.3 **** * Entropy 1.1 **** * (12.4 bits) 0.9 **** * 0.7 ****** * 0.4 ****** * 0.2 ******** 0.0 -------- Multilevel TGGCCGCG consensus C AA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCRMG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4247555-4247635 52 4.40e-06 CTAGGCCACG CGGCCGCG TACTCCTCGA chrX:7569782-7569862 56 4.40e-06 GAGTACTTCA CGGCCGCG TGGCCTAGTT chrIV:13289508-13289588 41 4.40e-06 AGAATCTGCA CGGCCGCG CGCGCGTGCA chrI:636765-636845 66 4.40e-06 TCCTAGTCCA CGGCCGCG CACGATT chrV:16401680-16401760 30 1.03e-05 TTTTCTCTGG TGGCCGCG GCCGAGGTTT chrIII:5803104-5803184 15 1.03e-05 AATTTGTTTG TGGCCGCG GTGGCCTAGT chrI:13835183-13835263 26 1.03e-05 GGGAAAATGA TGGCCGCG GCCGCCATTT chrIII:5068943-5069023 33 1.03e-05 ACCGCGGTTT TGGCCGCG GACTAGTGTT chrI:13470405-13470485 62 1.03e-05 AAAACGCGCG TGGCCGCG AGGGGGAAAT chrIII:8967800-8967880 20 1.03e-05 TCGAAAATGG TGGCCGCG TGGCCGAACT chrV:20090819-20090899 54 1.03e-05 AACAACACAC TGGCCGCG GCCTAGAAAA chrV:10441239-10441319 42 1.03e-05 TCAAGTTTTA TGGCCGCG GCCTAGAATC chrIII:1540282-1540362 2 1.03e-05 G TGGCCGCG GCCTAGAAAT chrII:3482360-3482440 14 1.03e-05 AAAATATCCG TGGCCGCG GCCTAAGAAC chrV:16022769-16022849 34 1.03e-05 AATGTGGTGG TGGCCGCG TGGCCGCGGA chrV:13409218-13409298 40 1.62e-05 GAGGAGTACA CGGCCGAG AATCACAAAA chrII:6097617-6097697 25 1.62e-05 GAGGAGTACA CGGCCGAG CATGCTCCGC chrIII:4930442-4930522 36 2.99e-05 CAAATAGCCG CGGCCACG GCCATGAGGT chrIV:4712595-4712675 37 2.99e-05 CTCGGCCACC CGGCCACG AAAACTCGGC chrIV:16995584-16995664 30 2.99e-05 TCCTCTTCCA CGGCCACG CGGCCCCCAC chrII:8039578-8039658 43 2.99e-05 TTTAAGTCTT CGGCCACG TTGTCCTGCA chrI:5281810-5281890 33 2.99e-05 ACGAATTTCT CGGCCACG GCCATCAGTT chrIII:11286261-11286341 17 2.99e-05 CGGAGCCCCG CGGCCACG GCCCCCACGC chrV:10320322-10320402 34 2.99e-05 AACTAGGCCA CGGCCACG CGTTCTCTCG chrII:14857069-14857149 25 2.99e-05 CCCGCTGCGG TGGCCGAG TCCCTGCCGG chrI:6760295-6760375 24 2.99e-05 AGTTTCCACA TGGCCGAG CTATCTCGTG chrX:3379228-3379308 66 2.99e-05 GATTTGCGCA TGGCCGAG CCGGGAA chrI:78044-78124 47 2.99e-05 ATTTTCGGCT TGGCCGAG TTTTCTCCCG chrIII:7199015-7199095 26 2.99e-05 CAAATGTGCG CGGCCACG GCCACTGTTG chrI:11222150-11222230 37 2.99e-05 ACCTAGTCCA CGGCCACG CGGCCACCGA chrIII:12673531-12673611 35 2.99e-05 CACGGCGTGG TGGCCGAG ACCCCGACTC chrIII:10064305-10064385 12 2.99e-05 AAATCAAGCC TGGCCGAG GTGGCCGTGG chrIV:12653246-12653326 42 2.99e-05 CTGGGTCTCG TGGCCGAG ATTCCGACAC chrV:2127164-2127244 68 3.58e-05 CTAGTCCTCC CGGCCGTG TACTT chrIII:4912482-4912562 47 3.58e-05 TTCGGATTCT CGGCCGTG GCCTAGAATA chrIV:6632001-6632081 6 3.58e-05 TCGGT CGGCCGTG GGTCGCGAAT chrII:4791435-4791515 45 3.58e-05 ACTCGGCCGC CGGCCGTG TACTCCTCTC chrIV:8973673-8973753 69 3.58e-05 CTAGTCCGCG CGGCCGTG TAGT chrII:10538114-10538194 37 3.58e-05 AATTATTTCT CGGCCGTG TACTCCTCTC chrIII:5190324-5190404 70 3.58e-05 CTGTAGTTCT CGGCCGTG TAC chrIV:11315059-11315139 28 3.58e-05 GAATTTCGTG CGGCCGTG GCTGAGTTTT chrII:15089601-15089681 18 3.58e-05 CTAGGCCACG CGGCCGTG TAGTCCTCCT chrV:10031922-10032002 29 3.58e-05 GTGGAGTACA CGGCCGTG TGGCCTAGAA chrIV:1687445-1687525 16 4.36e-05 TGACTCCACC TGGCCACG CCCATTTTTT chrIV:1687244-1687324 29 4.36e-05 TGCCTCCAGC TGGCCACG CCCAGAAAAT chrI:5165021-5165101 10 5.73e-05 GAAACACAA TGGCCGTG GCCTAAAAAT chrII:10200912-10200992 31 5.73e-05 TGGTGGCCGA TGGCCGTG GCCTAGGAAA chrV:11029444-11029524 61 5.73e-05 TCGATTTCTG CGGCCTCG TCGAGCATTT chrII:476162-476242 62 5.73e-05 TTGCCGACGA TGGCCGTG TGGGGGTTTC chrX:7798503-7798583 20 5.73e-05 ATGGAGGGTG TGGCCGTG TAAGAGGGGG chrI:10161987-10162067 13 5.73e-05 TTTTCGCTAG TGGCCGTG GCCGAACGCG chrIV:12094011-12094091 24 7.89e-05 AATTTGCTCA AGGCCGCG GCCGTAGGGT chrII:6776788-6776868 68 1.05e-04 TTCCATGCGG CGGCCTAG AAAAT chrI:14756441-14756521 35 1.05e-04 ACCTCGGTCA CGGCCATG CCACTTTTTT chrV:2603178-2603258 36 1.05e-04 TCCTCGTCCA CGGCCATG CGAAATGCGC chrIV:11592946-11593026 58 1.05e-04 TGCTAGTCCG CGGCCATG ACTAATCAGA chrV:14133113-14133193 39 1.26e-04 AAAAATGAGA TGGCCTAG ATATCCACAC chrIII:5308377-5308457 48 1.26e-04 TCACCAACAA TGGCCTAG AACCACCGGT chrII:4993948-4994028 54 1.26e-04 TCCTAGTCCA TGGCCTAG AAAACTCCAT chrX:16376145-16376225 26 1.26e-04 CGATTCGCCG TGGCCTAG AAACCGCGAG chrII:2752707-2752787 44 1.26e-04 CGATTGCGCG TGGCCTAG CAGTGGAAAC chrV:20424932-20425012 42 1.26e-04 TTCCCAATGG TGGCCTAG AAAACCCCGA chrV:6107626-6107706 44 1.26e-04 AACCGGGACG TGGCCTAG CGTTCCGCGA chrI:9393800-9393880 21 1.26e-04 CACGACATGC TGGCCTAG AAACCTCTGC chrIV:7816583-7816663 7 1.26e-04 ACCGTG TGGCCTAG GAAACTCTTG chrIII:4196745-4196825 9 1.26e-04 GGATCCAA TGGCCTAG CTTTACCCAG chrIII:9465615-9465695 18 1.26e-04 ACGAGCGCGT TGGCCTAG AAAACGCATG chrI:5118891-5118971 40 1.26e-04 AAAATCAAGA TGGCCTAG AATTTCAACT chrIV:9797496-9797576 40 1.26e-04 ACAAACGCCT TGGCCTAG AACTTTCACA chrII:6061653-6061733 38 1.70e-04 ACACGGCTGA TGGCCGGG AAGTTTTCTA chrI:1034324-1034404 69 1.70e-04 GCGGGTTTCT AGGCCACG GCCA chrIII:8850827-8850907 31 1.70e-04 TGGAAATTCT AGGCCACG GATAACTATT chrII:13117261-13117341 56 1.70e-04 CCGAAATGCT AGGCCACG CGTCGCGTAC chrI:3636620-3636700 54 1.70e-04 TGGGAAACCT AGGCCACG GCCATCGAGA chrX:9917541-9917621 18 1.70e-04 AGAGACAACT AGGCCACG GCCACAGGAG chrI:3176561-3176641 42 1.70e-04 GGAGAAAGTT AGGCCACG GCCACCACGG chrV:156206-156286 45 1.70e-04 AAAGTTTCCT AGGCCACG CGACCGTGTA chrIII:7088082-7088162 15 2.03e-04 GATCACCTCA CGGCCAGG CGAATTTCTC chrII:4603196-4603276 55 2.08e-04 AAAACCCTCG CGGCCGCA GTTGCCCGCG chrV:7084916-7084996 16 2.08e-04 AAACCAACCT CGGCCGCA CTGCGCCGGC chrIII:8144720-8144800 61 2.51e-04 ACACACAGCG CGGCCTGG TTTTCCATAG chrII:5819839-5819919 16 2.83e-04 GTGTTGTTCA CGGCCGAA GTTTTTCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCRMG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4247555-4247635 4.4e-06 51_[+1]_21 chrX:7569782-7569862 4.4e-06 55_[+1]_17 chrIV:13289508-13289588 4.4e-06 40_[+1]_32 chrI:636765-636845 4.4e-06 65_[+1]_7 chrV:16401680-16401760 1e-05 29_[+1]_43 chrIII:5803104-5803184 1e-05 14_[+1]_58 chrI:13835183-13835263 1e-05 25_[+1]_47 chrIII:5068943-5069023 1e-05 32_[+1]_40 chrI:13470405-13470485 1e-05 61_[+1]_11 chrIII:8967800-8967880 1e-05 19_[+1]_53 chrV:20090819-20090899 1e-05 53_[+1]_19 chrV:10441239-10441319 1e-05 41_[+1]_31 chrIII:1540282-1540362 1e-05 1_[+1]_71 chrII:3482360-3482440 1e-05 13_[+1]_59 chrV:16022769-16022849 1e-05 33_[+1]_39 chrV:13409218-13409298 1.6e-05 39_[+1]_33 chrII:6097617-6097697 1.6e-05 24_[+1]_48 chrIII:4930442-4930522 3e-05 35_[+1]_37 chrIV:4712595-4712675 3e-05 36_[+1]_36 chrIV:16995584-16995664 3e-05 29_[+1]_43 chrII:8039578-8039658 3e-05 42_[+1]_30 chrI:5281810-5281890 3e-05 32_[+1]_40 chrIII:11286261-11286341 3e-05 16_[+1]_56 chrV:10320322-10320402 3e-05 33_[+1]_39 chrII:14857069-14857149 3e-05 24_[+1]_48 chrI:6760295-6760375 3e-05 23_[+1]_49 chrX:3379228-3379308 3e-05 65_[+1]_7 chrI:78044-78124 3e-05 46_[+1]_26 chrIII:7199015-7199095 3e-05 25_[+1]_47 chrI:11222150-11222230 3e-05 36_[+1]_36 chrIII:12673531-12673611 3e-05 34_[+1]_38 chrIII:10064305-10064385 3e-05 11_[+1]_61 chrIV:12653246-12653326 3e-05 41_[+1]_31 chrV:2127164-2127244 3.6e-05 67_[+1]_5 chrIII:4912482-4912562 3.6e-05 46_[+1]_26 chrIV:6632001-6632081 3.6e-05 5_[+1]_67 chrII:4791435-4791515 3.6e-05 44_[+1]_28 chrIV:8973673-8973753 3.6e-05 68_[+1]_4 chrII:10538114-10538194 3.6e-05 36_[+1]_36 chrIII:5190324-5190404 3.6e-05 69_[+1]_3 chrIV:11315059-11315139 3.6e-05 27_[+1]_45 chrII:15089601-15089681 3.6e-05 17_[+1]_55 chrV:10031922-10032002 3.6e-05 28_[+1]_44 chrIV:1687445-1687525 4.4e-05 15_[+1]_57 chrIV:1687244-1687324 4.4e-05 28_[+1]_44 chrI:5165021-5165101 5.7e-05 9_[+1]_63 chrII:10200912-10200992 5.7e-05 30_[+1]_42 chrV:11029444-11029524 5.7e-05 60_[+1]_12 chrII:476162-476242 5.7e-05 61_[+1]_11 chrX:7798503-7798583 5.7e-05 19_[+1]_53 chrI:10161987-10162067 5.7e-05 12_[+1]_60 chrIV:12094011-12094091 7.9e-05 23_[+1]_49 chrII:6776788-6776868 0.00011 67_[+1]_5 chrI:14756441-14756521 0.00011 34_[+1]_38 chrV:2603178-2603258 0.00011 35_[+1]_37 chrIV:11592946-11593026 0.00011 57_[+1]_15 chrV:14133113-14133193 0.00013 38_[+1]_34 chrIII:5308377-5308457 0.00013 47_[+1]_25 chrII:4993948-4994028 0.00013 53_[+1]_19 chrX:16376145-16376225 0.00013 25_[+1]_47 chrII:2752707-2752787 0.00013 43_[+1]_29 chrV:20424932-20425012 0.00013 41_[+1]_31 chrV:6107626-6107706 0.00013 43_[+1]_29 chrI:9393800-9393880 0.00013 20_[+1]_52 chrIV:7816583-7816663 0.00013 6_[+1]_66 chrIII:4196745-4196825 0.00013 8_[+1]_64 chrIII:9465615-9465695 0.00013 17_[+1]_55 chrI:5118891-5118971 0.00013 39_[+1]_33 chrIV:9797496-9797576 0.00013 39_[+1]_33 chrII:6061653-6061733 0.00017 37_[+1]_35 chrI:1034324-1034404 0.00017 68_[+1]_4 chrIII:8850827-8850907 0.00017 30_[+1]_42 chrII:13117261-13117341 0.00017 55_[+1]_17 chrI:3636620-3636700 0.00017 53_[+1]_19 chrX:9917541-9917621 0.00017 17_[+1]_55 chrI:3176561-3176641 0.00017 41_[+1]_31 chrV:156206-156286 0.00017 44_[+1]_28 chrIII:7088082-7088162 0.0002 14_[+1]_58 chrII:4603196-4603276 0.00021 54_[+1]_18 chrV:7084916-7084996 0.00021 15_[+1]_57 chrIII:8144720-8144800 0.00025 60_[+1]_12 chrII:5819839-5819919 0.00028 15_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCRMG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGCCRMG width=8 seqs=82 chrI:4247555-4247635 ( 52) CGGCCGCG 1 chrX:7569782-7569862 ( 56) CGGCCGCG 1 chrIV:13289508-13289588 ( 41) CGGCCGCG 1 chrI:636765-636845 ( 66) CGGCCGCG 1 chrV:16401680-16401760 ( 30) TGGCCGCG 1 chrIII:5803104-5803184 ( 15) TGGCCGCG 1 chrI:13835183-13835263 ( 26) TGGCCGCG 1 chrIII:5068943-5069023 ( 33) TGGCCGCG 1 chrI:13470405-13470485 ( 62) TGGCCGCG 1 chrIII:8967800-8967880 ( 20) TGGCCGCG 1 chrV:20090819-20090899 ( 54) TGGCCGCG 1 chrV:10441239-10441319 ( 42) TGGCCGCG 1 chrIII:1540282-1540362 ( 2) TGGCCGCG 1 chrII:3482360-3482440 ( 14) TGGCCGCG 1 chrV:16022769-16022849 ( 34) TGGCCGCG 1 chrV:13409218-13409298 ( 40) CGGCCGAG 1 chrII:6097617-6097697 ( 25) CGGCCGAG 1 chrIII:4930442-4930522 ( 36) CGGCCACG 1 chrIV:4712595-4712675 ( 37) CGGCCACG 1 chrIV:16995584-16995664 ( 30) CGGCCACG 1 chrII:8039578-8039658 ( 43) CGGCCACG 1 chrI:5281810-5281890 ( 33) CGGCCACG 1 chrIII:11286261-11286341 ( 17) CGGCCACG 1 chrV:10320322-10320402 ( 34) CGGCCACG 1 chrII:14857069-14857149 ( 25) TGGCCGAG 1 chrI:6760295-6760375 ( 24) TGGCCGAG 1 chrX:3379228-3379308 ( 66) TGGCCGAG 1 chrI:78044-78124 ( 47) TGGCCGAG 1 chrIII:7199015-7199095 ( 26) CGGCCACG 1 chrI:11222150-11222230 ( 37) CGGCCACG 1 chrIII:12673531-12673611 ( 35) TGGCCGAG 1 chrIII:10064305-10064385 ( 12) TGGCCGAG 1 chrIV:12653246-12653326 ( 42) TGGCCGAG 1 chrV:2127164-2127244 ( 68) CGGCCGTG 1 chrIII:4912482-4912562 ( 47) CGGCCGTG 1 chrIV:6632001-6632081 ( 6) CGGCCGTG 1 chrII:4791435-4791515 ( 45) CGGCCGTG 1 chrIV:8973673-8973753 ( 69) CGGCCGTG 1 chrII:10538114-10538194 ( 37) CGGCCGTG 1 chrIII:5190324-5190404 ( 70) CGGCCGTG 1 chrIV:11315059-11315139 ( 28) CGGCCGTG 1 chrII:15089601-15089681 ( 18) CGGCCGTG 1 chrV:10031922-10032002 ( 29) CGGCCGTG 1 chrIV:1687445-1687525 ( 16) TGGCCACG 1 chrIV:1687244-1687324 ( 29) TGGCCACG 1 chrI:5165021-5165101 ( 10) TGGCCGTG 1 chrII:10200912-10200992 ( 31) TGGCCGTG 1 chrV:11029444-11029524 ( 61) CGGCCTCG 1 chrII:476162-476242 ( 62) TGGCCGTG 1 chrX:7798503-7798583 ( 20) TGGCCGTG 1 chrI:10161987-10162067 ( 13) TGGCCGTG 1 chrIV:12094011-12094091 ( 24) AGGCCGCG 1 chrII:6776788-6776868 ( 68) CGGCCTAG 1 chrI:14756441-14756521 ( 35) CGGCCATG 1 chrV:2603178-2603258 ( 36) CGGCCATG 1 chrIV:11592946-11593026 ( 58) CGGCCATG 1 chrV:14133113-14133193 ( 39) TGGCCTAG 1 chrIII:5308377-5308457 ( 48) TGGCCTAG 1 chrII:4993948-4994028 ( 54) TGGCCTAG 1 chrX:16376145-16376225 ( 26) TGGCCTAG 1 chrII:2752707-2752787 ( 44) TGGCCTAG 1 chrV:20424932-20425012 ( 42) TGGCCTAG 1 chrV:6107626-6107706 ( 44) TGGCCTAG 1 chrI:9393800-9393880 ( 21) TGGCCTAG 1 chrIV:7816583-7816663 ( 7) TGGCCTAG 1 chrIII:4196745-4196825 ( 9) TGGCCTAG 1 chrIII:9465615-9465695 ( 18) TGGCCTAG 1 chrI:5118891-5118971 ( 40) TGGCCTAG 1 chrIV:9797496-9797576 ( 40) TGGCCTAG 1 chrII:6061653-6061733 ( 38) TGGCCGGG 1 chrI:1034324-1034404 ( 69) AGGCCACG 1 chrIII:8850827-8850907 ( 31) AGGCCACG 1 chrII:13117261-13117341 ( 56) AGGCCACG 1 chrI:3636620-3636700 ( 54) AGGCCACG 1 chrX:9917541-9917621 ( 18) AGGCCACG 1 chrI:3176561-3176641 ( 42) AGGCCACG 1 chrV:156206-156286 ( 45) AGGCCACG 1 chrIII:7088082-7088162 ( 15) CGGCCAGG 1 chrII:4603196-4603276 ( 55) CGGCCGCA 1 chrV:7084916-7084996 ( 16) CGGCCGCA 1 chrIII:8144720-8144800 ( 61) CGGCCTGG 1 chrII:5819839-5819919 ( 16) CGGCCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCRMG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 9.1e-067 -156 100 -1300 74 -1300 -1300 222 -1300 -1300 -1300 222 -1300 -1300 222 -1300 -1300 -1300 222 -1300 -1300 -10 -1300 132 -55 3 108 -255 -38 -297 -1300 217 -1300 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCRMG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 9.1e-067 0.097561 0.426829 0.000000 0.475610 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.268293 0.000000 0.536585 0.195122 0.292683 0.451220 0.036585 0.219512 0.036585 0.000000 0.963415 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCRMG MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GGCC[GA][CAT]G -------------------------------------------------------------------------------- Time 5.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CTMGGCCA MEME-2 width = 8 sites = 57 llr = 478 E-value = 3.8e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :16::1:8 pos.-specific C 914::9a: probability G :::a8::2 matrix T 19::21:: bits 2.2 * 2.0 * * * 1.8 * * * 1.6 * * ** Relative 1.3 * **** Entropy 1.1 ******** (12.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTAGGCCA consensus C T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4247555-4247635 42 1.05e-05 TAGTTACTTC CTAGGCCA CGCGGCCGCG chrV:10356096-10356176 42 1.05e-05 GAGGGATATT CTAGGCCA TATGTAGCAA chrI:8511431-8511511 26 1.05e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrV:14133113-14133193 65 1.05e-05 ACGTCGGTTT CTAGGCCA CCGCTACA chrV:18981157-18981237 31 1.05e-05 TCAGAGTTTC CTAGGCCA CCGCCGGTGT chrII:2752707-2752787 62 1.05e-05 CAGTGGAAAC CTAGGCCA CTGAAGGCGA chrI:15014028-15014108 7 1.05e-05 GGAATT CTAGGCCA CCAGATCATA chrII:15089601-15089681 8 1.05e-05 TTGGTTC CTAGGCCA CGCGGCCGTG chrIII:9465615-9465695 46 1.05e-05 TCAGCATTTT CTAGGCCA TTTCGGAGAT chrV:10320322-10320402 26 1.05e-05 GTTCCTAGAA CTAGGCCA CGGCCACGCG chrIII:7858574-7858654 33 1.05e-05 GTGGAGATTC CTAGGCCA TCACTCCATA chrIV:9797496-9797576 68 1.05e-05 AAGGAGACTT CTAGGCCA TATTT chrI:5659154-5659234 19 1.05e-05 TTGTCGGTTC CTAGGCCA CCACCTCGTT chrV:16022769-16022849 65 1.05e-05 AGTGACGCCG CTAGGCCA TTTGGCGA chrIV:12653246-12653326 70 1.05e-05 ACGCCAGATC CTAGGCCA CTC chrV:11124099-11124179 46 1.84e-05 TCTCGGGTTC CTCGGCCA TTTTTATCGG chrIII:7088082-7088162 30 1.84e-05 AGGCGAATTT CTCGGCCA CCGCCTGGGG chrIV:4712595-4712675 27 1.84e-05 GGAGAAAATC CTCGGCCA CCCGGCCACG chrIII:8967800-8967880 49 1.84e-05 GGCTGGAGTT CTCGGCCA TAATGATATT chrII:14857069-14857149 68 1.84e-05 TCGCACACTT CTCGGCCA ttttt chrII:6097617-6097697 57 1.84e-05 GAGGGCATTC CTCGGCCA TATTACGATA chrIII:12673531-12673611 50 1.84e-05 GAGACCCCGA CTCGGCCA GGCAAGtttt chrV:15082440-15082520 63 2.62e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrII:4791435-4791515 36 3.21e-05 TAACATCCGA CTCGGCCG CCGGCCGTGT chrII:4993948-4994028 46 4.61e-05 TTGGAAATTC CTAGTCCA TGGCCTAGAA chrI:11222150-11222230 29 4.61e-05 TACACGAAAC CTAGTCCA CGGCCACGCG chrI:636765-636845 58 4.61e-05 CGTTCCCCTC CTAGTCCA CGGCCGCGCA chrM:2985-3065 43 5.66e-05 AGAGAATTTT CTCGTCCA CTTGCTTTAA chrV:2603178-2603258 28 5.66e-05 CCCGCACTTC CTCGTCCA CGGCCATGCG chrII:9591249-9591329 29 6.71e-05 AAAAACAATT CTAGTCCG CGCGTCGTGT chrV:5917845-5917925 70 6.71e-05 AATGAGATTT CTAGTCCG CAT chrIII:9868266-9868346 59 6.71e-05 GTAAAAACCT CTAGTCCG CGGCCACCGG chrIV:8973673-8973753 59 6.71e-05 TTGGGGAATC CTAGTCCG CGCGGCCGTG chrIV:11592946-11593026 50 6.71e-05 CTAGAAAATG CTAGTCCG CGGCCATGAC chrI:13835183-13835263 46 8.55e-05 CGCCATTTTC CAAGGCCA CCGGGGCTTA chrII:5819839-5819919 59 8.55e-05 CTTCTGAAAA CTCGTCCG CGACAGTGAA chrIV:12094011-12094091 59 8.55e-05 GAATCGATTT CTCGTCCG TCTTCCATGT chrIII:4196745-4196825 23 1.01e-04 CTAGCTTTAC CCAGGCCA CCACATTCCT chrIII:4930442-4930522 20 1.21e-04 GGTGACGTTT CTAGGTCA AATAGCCGCG chrIII:13187897-13187977 61 1.21e-04 TTGTCGGTTT CTAGGTCA CCACCCGTGT chrI:78044-78124 61 1.21e-04 CGAGTTTTCT CCCGGCCA CGATCATCAC chrI:14756441-14756521 27 1.32e-04 CAGGTGAAAC CTCGGTCA CGGCCATGCC chrX:7798503-7798583 41 1.32e-04 GAGGGGGAAA CTCGGTCA TGTCGCCCGT chrII:8325343-8325423 13 1.54e-04 CGCAGTTTTG CAAGGCCG CTCCACGGAG chrIII:5803104-5803184 36 1.84e-04 GCCTAGTTTT CACGGCCG AGAAATGTCA chrI:13470405-13470485 34 1.84e-04 GAGAGGACTA CACGGCCG GTGGCCTTGG chrIV:6632001-6632081 57 1.84e-04 GTGTACTCCA CTCGGACA ACTGGAGTAT chrIV:3803406-3803486 51 1.84e-04 CCGGAGATTT TTAGGCCA CACGACCGTG chrIII:4343301-4343381 6 1.84e-04 GAGTA CACGGCCG ATGGACTAGG chrII:484524-484604 11 1.84e-04 GTGGAAAAAG TTAGGCCA TCACTTTTTA chrIII:10064305-10064385 54 1.84e-04 GTGTACTCCA CTCGGACA ACATTTTCTT chrV:156206-156286 68 1.84e-04 GTGTACTCCT CTCGGACA AACAA chrII:6061653-6061733 53 2.37e-04 GGGAAGTTTT CTAGGCAA CATGTGCAAT chrI:2710621-2710701 47 2.37e-04 TAGGCTTAAA CTAGGCAA ATCCTCCGCG chrIV:3988769-3988849 67 2.94e-04 GTGATAAGCA CCAGTCCA CACGCT chrI:5118891-5118971 63 3.38e-04 CAACTGCGGA CTAGTTCA TCAGAAAACT chrIII:8850827-8850907 10 3.60e-04 ATGCAAGTG TTCGGCCG TCGTGGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4247555-4247635 1.1e-05 41_[+2]_31 chrV:10356096-10356176 1.1e-05 41_[+2]_31 chrI:8511431-8511511 1.1e-05 25_[+2]_47 chrV:14133113-14133193 1.1e-05 64_[+2]_8 chrV:18981157-18981237 1.1e-05 30_[+2]_42 chrII:2752707-2752787 1.1e-05 61_[+2]_11 chrI:15014028-15014108 1.1e-05 6_[+2]_66 chrII:15089601-15089681 1.1e-05 7_[+2]_65 chrIII:9465615-9465695 1.1e-05 45_[+2]_27 chrV:10320322-10320402 1.1e-05 25_[+2]_47 chrIII:7858574-7858654 1.1e-05 32_[+2]_40 chrIV:9797496-9797576 1.1e-05 67_[+2]_5 chrI:5659154-5659234 1.1e-05 18_[+2]_54 chrV:16022769-16022849 1.1e-05 64_[+2]_8 chrIV:12653246-12653326 1.1e-05 69_[+2]_3 chrV:11124099-11124179 1.8e-05 45_[+2]_27 chrIII:7088082-7088162 1.8e-05 29_[+2]_43 chrIV:4712595-4712675 1.8e-05 26_[+2]_46 chrIII:8967800-8967880 1.8e-05 48_[+2]_24 chrII:14857069-14857149 1.8e-05 67_[+2]_5 chrII:6097617-6097697 1.8e-05 56_[+2]_16 chrIII:12673531-12673611 1.8e-05 49_[+2]_23 chrV:15082440-15082520 2.6e-05 62_[+2]_10 chrII:4791435-4791515 3.2e-05 35_[+2]_37 chrII:4993948-4994028 4.6e-05 45_[+2]_27 chrI:11222150-11222230 4.6e-05 28_[+2]_44 chrI:636765-636845 4.6e-05 57_[+2]_15 chrM:2985-3065 5.7e-05 42_[+2]_30 chrV:2603178-2603258 5.7e-05 27_[+2]_45 chrII:9591249-9591329 6.7e-05 28_[+2]_44 chrV:5917845-5917925 6.7e-05 69_[+2]_3 chrIII:9868266-9868346 6.7e-05 58_[+2]_14 chrIV:8973673-8973753 6.7e-05 58_[+2]_14 chrIV:11592946-11593026 6.7e-05 49_[+2]_23 chrI:13835183-13835263 8.5e-05 45_[+2]_27 chrII:5819839-5819919 8.5e-05 58_[+2]_14 chrIV:12094011-12094091 8.5e-05 58_[+2]_14 chrIII:4196745-4196825 0.0001 22_[+2]_50 chrIII:4930442-4930522 0.00012 19_[+2]_53 chrIII:13187897-13187977 0.00012 60_[+2]_12 chrI:78044-78124 0.00012 60_[+2]_12 chrI:14756441-14756521 0.00013 26_[+2]_46 chrX:7798503-7798583 0.00013 40_[+2]_32 chrII:8325343-8325423 0.00015 12_[+2]_60 chrIII:5803104-5803184 0.00018 35_[+2]_37 chrI:13470405-13470485 0.00018 33_[+2]_39 chrIV:6632001-6632081 0.00018 56_[+2]_16 chrIV:3803406-3803486 0.00018 50_[+2]_22 chrIII:4343301-4343381 0.00018 5_[+2]_67 chrII:484524-484604 0.00018 10_[+2]_62 chrIII:10064305-10064385 0.00018 53_[+2]_19 chrV:156206-156286 0.00018 67_[+2]_5 chrII:6061653-6061733 0.00024 52_[+2]_20 chrI:2710621-2710701 0.00024 46_[+2]_26 chrIV:3988769-3988849 0.00029 66_[+2]_6 chrI:5118891-5118971 0.00034 62_[+2]_10 chrIII:8850827-8850907 0.00036 9_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTMGGCCA width=8 seqs=57 chrI:4247555-4247635 ( 42) CTAGGCCA 1 chrV:10356096-10356176 ( 42) CTAGGCCA 1 chrI:8511431-8511511 ( 26) CTAGGCCA 1 chrV:14133113-14133193 ( 65) CTAGGCCA 1 chrV:18981157-18981237 ( 31) CTAGGCCA 1 chrII:2752707-2752787 ( 62) CTAGGCCA 1 chrI:15014028-15014108 ( 7) CTAGGCCA 1 chrII:15089601-15089681 ( 8) CTAGGCCA 1 chrIII:9465615-9465695 ( 46) CTAGGCCA 1 chrV:10320322-10320402 ( 26) CTAGGCCA 1 chrIII:7858574-7858654 ( 33) CTAGGCCA 1 chrIV:9797496-9797576 ( 68) CTAGGCCA 1 chrI:5659154-5659234 ( 19) CTAGGCCA 1 chrV:16022769-16022849 ( 65) CTAGGCCA 1 chrIV:12653246-12653326 ( 70) CTAGGCCA 1 chrV:11124099-11124179 ( 46) CTCGGCCA 1 chrIII:7088082-7088162 ( 30) CTCGGCCA 1 chrIV:4712595-4712675 ( 27) CTCGGCCA 1 chrIII:8967800-8967880 ( 49) CTCGGCCA 1 chrII:14857069-14857149 ( 68) CTCGGCCA 1 chrII:6097617-6097697 ( 57) CTCGGCCA 1 chrIII:12673531-12673611 ( 50) CTCGGCCA 1 chrV:15082440-15082520 ( 63) CTAGGCCG 1 chrII:4791435-4791515 ( 36) CTCGGCCG 1 chrII:4993948-4994028 ( 46) CTAGTCCA 1 chrI:11222150-11222230 ( 29) CTAGTCCA 1 chrI:636765-636845 ( 58) CTAGTCCA 1 chrM:2985-3065 ( 43) CTCGTCCA 1 chrV:2603178-2603258 ( 28) CTCGTCCA 1 chrII:9591249-9591329 ( 29) CTAGTCCG 1 chrV:5917845-5917925 ( 70) CTAGTCCG 1 chrIII:9868266-9868346 ( 59) CTAGTCCG 1 chrIV:8973673-8973753 ( 59) CTAGTCCG 1 chrIV:11592946-11593026 ( 50) CTAGTCCG 1 chrI:13835183-13835263 ( 46) CAAGGCCA 1 chrII:5819839-5819919 ( 59) CTCGTCCG 1 chrIV:12094011-12094091 ( 59) CTCGTCCG 1 chrIII:4196745-4196825 ( 23) CCAGGCCA 1 chrIII:4930442-4930522 ( 20) CTAGGTCA 1 chrIII:13187897-13187977 ( 61) CTAGGTCA 1 chrI:78044-78124 ( 61) CCCGGCCA 1 chrI:14756441-14756521 ( 27) CTCGGTCA 1 chrX:7798503-7798583 ( 41) CTCGGTCA 1 chrII:8325343-8325423 ( 13) CAAGGCCG 1 chrIII:5803104-5803184 ( 36) CACGGCCG 1 chrI:13470405-13470485 ( 34) CACGGCCG 1 chrIV:6632001-6632081 ( 57) CTCGGACA 1 chrIV:3803406-3803486 ( 51) TTAGGCCA 1 chrIII:4343301-4343381 ( 6) CACGGCCG 1 chrII:484524-484604 ( 11) TTAGGCCA 1 chrIII:10064305-10064385 ( 54) CTCGGACA 1 chrV:156206-156286 ( 68) CTCGGACA 1 chrII:6061653-6061733 ( 53) CTAGGCAA 1 chrI:2710621-2710701 ( 47) CTAGGCAA 1 chrIV:3988769-3988849 ( 67) CCAGTCCA 1 chrI:5118891-5118971 ( 63) CTAGTTCA 1 chrIII:8850827-8850907 ( 10) TTCGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.55676 E= 3.8e-026 -1248 215 -1248 -243 -171 -202 -1248 159 110 85 -1248 -1248 -1248 -1248 222 -1248 -1248 -1248 182 -21 -245 201 -1248 -170 -303 217 -1248 -1248 139 -1248 20 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 3.8e-026 0.000000 0.947368 0.000000 0.052632 0.087719 0.052632 0.000000 0.859649 0.614035 0.385965 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.754386 0.245614 0.052632 0.859649 0.000000 0.087719 0.035088 0.964912 0.000000 0.000000 0.754386 0.000000 0.245614 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- CT[AC]G[GT]CC[AG] -------------------------------------------------------------------------------- Time 10.78 secs. ******************************************************************************** ******************************************************************************** MOTIF TACTCCTC MEME-3 width = 8 sites = 17 llr = 179 E-value = 4.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TACTCCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C ::9:aa:a probability G 2:1::::: matrix T 8::a::a: bits 2.2 ** * 2.0 * ** * 1.8 ******* 1.6 ******* Relative 1.3 ******* Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TACTCCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACTCCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4247555-4247635 60 1.39e-05 CGCGGCCGCG TACTCCTC GAGGACAAAA chrII:9591249-9591329 46 1.39e-05 GCGCGTCGTG TACTCCTC TCAGACAAAC chrIII:11746879-11746959 66 1.39e-05 TCCGCAGGTG TACTCCTC TCGGAAA chrIV:1347158-1347238 27 1.39e-05 CCGCTCGGTG TACTCCTC TCGGATAATA chrV:18981157-18981237 48 1.39e-05 ACCGCCGGTG TACTCCTC TCCGACAACG chrII:4791435-4791515 53 1.39e-05 GCCGGCCGTG TACTCCTC TCGGACAATA chrV:10441239-10441319 71 1.39e-05 GACAACCGTG TACTCCTC CT chrIV:3803406-3803486 69 1.39e-05 CACGACCGTG TACTCCTC TCGG chrII:10538114-10538194 45 1.39e-05 CTCGGCCGTG TACTCCTC TCGGGCAATT chrII:13117261-13117341 71 1.39e-05 ACGCGTCGCG TACTCCTC TC chrV:10320322-10320402 58 1.39e-05 CTCGGCCATG TACTCCTC TCGGACAAAC chrI:6760295-6760375 42 1.39e-05 CTATCTCGTG TACTCCTC TCGAACATCG chrI:10161987-10162067 57 1.39e-05 TTCATGTATG TACTCCTC GTGGACTAAT chrV:16401680-16401760 59 2.44e-05 TCCGCGCTCG GACTCCTC TCGGAGGAGT chrIII:7088082-7088162 47 2.44e-05 ACCGCCTGGG GACTCCTC TTGGGCAATT chrX:9296724-9296804 35 2.44e-05 GTTTCGGTGA GACTCCTC CCCCATGCAA chrII:15089601-15089681 26 3.83e-05 CGCGGCCGTG TAGTCCTC CTGGACAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACTCCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4247555-4247635 1.4e-05 59_[+3]_13 chrII:9591249-9591329 1.4e-05 45_[+3]_27 chrIII:11746879-11746959 1.4e-05 65_[+3]_7 chrIV:1347158-1347238 1.4e-05 26_[+3]_46 chrV:18981157-18981237 1.4e-05 47_[+3]_25 chrII:4791435-4791515 1.4e-05 52_[+3]_20 chrV:10441239-10441319 1.4e-05 70_[+3]_2 chrIV:3803406-3803486 1.4e-05 68_[+3]_4 chrII:10538114-10538194 1.4e-05 44_[+3]_28 chrII:13117261-13117341 1.4e-05 70_[+3]_2 chrV:10320322-10320402 1.4e-05 57_[+3]_15 chrI:6760295-6760375 1.4e-05 41_[+3]_31 chrI:10161987-10162067 1.4e-05 56_[+3]_16 chrV:16401680-16401760 2.4e-05 58_[+3]_14 chrIII:7088082-7088162 2.4e-05 46_[+3]_26 chrX:9296724-9296804 2.4e-05 34_[+3]_38 chrII:15089601-15089681 3.8e-05 25_[+3]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACTCCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TACTCCTC width=8 seqs=17 chrI:4247555-4247635 ( 60) TACTCCTC 1 chrII:9591249-9591329 ( 46) TACTCCTC 1 chrIII:11746879-11746959 ( 66) TACTCCTC 1 chrIV:1347158-1347238 ( 27) TACTCCTC 1 chrV:18981157-18981237 ( 48) TACTCCTC 1 chrII:4791435-4791515 ( 53) TACTCCTC 1 chrV:10441239-10441319 ( 71) TACTCCTC 1 chrIV:3803406-3803486 ( 69) TACTCCTC 1 chrII:10538114-10538194 ( 45) TACTCCTC 1 chrII:13117261-13117341 ( 71) TACTCCTC 1 chrV:10320322-10320402 ( 58) TACTCCTC 1 chrI:6760295-6760375 ( 42) TACTCCTC 1 chrI:10161987-10162067 ( 57) TACTCCTC 1 chrV:16401680-16401760 ( 59) GACTCCTC 1 chrIII:7088082-7088162 ( 47) GACTCCTC 1 chrX:9296724-9296804 ( 35) GACTCCTC 1 chrII:15089601-15089681 ( 26) TAGTCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACTCCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 4.5e-007 -1073 -1073 -28 153 180 -1073 -1073 -1073 -1073 214 -186 -1073 -1073 -1073 -1073 181 -1073 222 -1073 -1073 -1073 222 -1073 -1073 -1073 -1073 -1073 181 -1073 222 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACTCCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.5e-007 0.000000 0.000000 0.176471 0.823529 1.000000 0.000000 0.000000 0.000000 0.000000 0.941176 0.058824 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACTCCTC MEME-3 regular expression -------------------------------------------------------------------------------- TACTCCTC -------------------------------------------------------------------------------- Time 14.41 secs. ******************************************************************************** ******************************************************************************** MOTIF TKMRAAAA MEME-4 width = 8 sites = 108 llr = 706 E-value = 2.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKMRAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::45aaa8 pos.-specific C 224::::: probability G :515:::: matrix T 831::::2 bits 2.2 2.0 1.8 *** 1.6 *** Relative 1.3 *** Entropy 1.1 * ***** (9.4 bits) 0.9 * ***** 0.7 * ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel TGCGAAAA consensus TAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMRAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11142229-11142309 15 1.90e-05 ATTAACTTTT TGCGAAAA TTCACTTCTA chrI:7003577-7003657 34 1.90e-05 AAAGGGGATC TGCGAAAA GGGGATCTGC chrII:1134526-1134606 37 1.90e-05 AAAGGGGATC TGCGAAAA GGGGAGATAC chrI:12899351-12899431 43 1.90e-05 AAAGGGGATC TGCGAAAA GGGGATCTGC chrII:6741560-6741640 45 1.90e-05 CTCCGGTGTC TGCGAAAA TTGTTGCGAG chrIV:5371083-5371163 10 1.90e-05 CGGCAACAT TGCGAAAA CGCGTGCCGC chrI:4958847-4958927 40 1.90e-05 AAAGGGGATC TGCGAAAA GGGGAGATAC chrIII:10811068-10811148 47 1.90e-05 AAAGGAGATC TGCGAAAA GGGGAGATAC chrI:12899127-12899207 43 1.90e-05 AAAGGGGATC TGCGAAAA GGGGATCGGC chrI:1175803-1175883 65 6.98e-05 GCGGCACACT TGCAAAAA CCGTGCGC chrIII:8700736-8700816 25 6.98e-05 GCATAACAAC TGCAAAAA GTTCAATAGC chrII:8062395-8062475 5 6.98e-05 CTCC TGCAAAAA TGTGGTGTCT chrII:13117261-13117341 11 6.98e-05 GAAAGTCGAG TGAGAAAA ACATGTTTTT chrIII:10811276-10811356 22 6.98e-05 GTGCGTTGCG TGAGAAAA ATTGCGTTTT chrIV:12490233-12490313 47 6.98e-05 CTCGCTCTAT TGAGAAAA ATACAGTTTT chrV:14423443-14423523 42 6.98e-05 CTTTACTAGT TGAGAAAA TATTAAGTCT chrI:2571146-2571226 20 6.98e-05 ATTTCATAGA TGCAAAAA CCCGGGAAGT chrII:5836479-5836559 7 6.98e-05 GATTTG TGAGAAAA ATTAGTTGTC chrIV:4702237-4702317 67 6.98e-05 GTGCGTTGCG TGAGAAAA ATTGCG chrI:1280179-1280259 64 6.98e-05 ACTTTTTAAC TGAGAAAA TCGGAACAT chrIV:12268715-12268795 24 1.04e-04 CCATAATCGA TGAAAAAA CGCCTATTAA chrII:14528450-14528530 7 1.04e-04 GAACTC TGAAAAAA CTAAAATTGC chrV:2697827-2697907 17 1.04e-04 TAAAATCTCA TGAAAAAA AAATTTCGAC chrI:3176561-3176641 15 1.04e-04 CCATTTGTAC TGAAAAAA AAGAAAATTG chrII:13279413-13279493 8 1.04e-04 CTTGAAT TGAAAAAA TTGTATCAGA chrI:15052749-15052829 44 1.04e-04 GTTTTCTAAT TGAAAAAA TTCAAAATTT chrII:8137442-8137522 34 1.04e-04 GCAGATTCGC TGAAAAAA AATGAAGTTG chrIV:9858272-9858352 54 1.29e-04 ACAGACAAAA TTCGAAAA AATTTGCACG chrIII:8967800-8967880 9 1.29e-04 AAGTCGAA TTCGAAAA TGGTGGCCGC chrI:1213541-1213621 73 1.29e-04 AGATTCGATT TTCGAAAA chrII:7122966-7123046 15 1.29e-04 TCCGCACGGT TTCGAAAA ACAAAAGTTG chrI:636765-636845 23 1.29e-04 aaattcgaaa ttcgaaaA ACATGGCCGT chrIII:5102775-5102855 41 1.48e-04 TTTCTGTGTC TCCGAAAA CTCCCATTCC chrV:14443841-14443921 12 2.16e-04 TTGGCGAGTT TTAGAAAA GGGGAGCTGG chrI:10469098-10469178 66 2.16e-04 AGAAGAAAAT TTCAAAAA TCAACGT chrI:9393800-9393880 56 2.16e-04 AGGGCACTAA TTCAAAAA AGTTTGTCTT chrV:7084916-7084996 55 2.16e-04 AGGGCGGCAA TTCAAAAA AGAATAACAA chrIII:7199015-7199095 51 2.16e-04 TTGGCGGTAA TTCAAAAA TAATATTTTA chrI:5659154-5659234 50 2.16e-04 TTGGCGGTGG TTCAAAAA ATATTATTTG chrIII:10856974-10857054 71 2.16e-04 CCATGGTGAC TTCAAAAA CT chrV:11933477-11933557 39 2.16e-04 TTGTTATTTA TTCAAAAA TTCTTAAAAT chrIV:11592946-11593026 10 2.16e-04 TAATTTCCC TTCAAAAA ATTCTCCGTA chrV:5917845-5917925 2 2.81e-04 C TCCAAAAA ATAGGAGCGC chrX:4961659-4961739 62 2.81e-04 TATATATGTG TCAGAAAA GAGGCTGCCG chrII:15119855-15119935 42 2.81e-04 TGGAAAAATT TCCAAAaa aatccatgaa chrIII:5190324-5190404 44 2.81e-04 TTGAATTTCG CGCGAAAA TGAGTGTTCT chrIII:11093618-11093698 25 2.81e-04 TCAGGAGGAA TCCAAAAA TCGGTAGAAA chrV:14133113-14133193 25 3.45e-04 AAAAATTAAT TTAAAAAA ATGAGATGGC chrI:5118891-5118971 24 3.45e-04 ACTTTTTTAG TTAAAAAA AATCAAGATG chrV:2603178-2603258 66 3.45e-04 GCATTCAAAT TGGGAAAA TCGAACG chrII:5594428-5594508 12 3.45e-04 CAATGTTTCT TTAAAAAA ACAATTGTTT chrIII:9808294-9808374 41 3.45e-04 TAAAATATTT TTAAAAAA CTTTATATAA chrI:4769367-4769447 53 3.70e-04 agaatttgtc tgtgaaaa accaaatatc chrII:6776788-6776868 13 4.61e-04 AATCATTTTC CGCAAAAA ACTATTTTTG chrII:4603196-4603276 41 4.61e-04 ACGAGGTGGA CGAGAAAA CCCTCGCGGC chrV:20090819-20090899 9 4.61e-04 AAACCAAC TCAAAAAA CATTTTCAAA chrIII:4343301-4343381 33 4.61e-04 GAACACACTG TGCGAAAT GTTGGGCCAT chrII:6734825-6734905 44 4.61e-04 GGTGTCTCAA CGAGAAAA GCAAACGCGC chrV:4536001-4536081 6 4.61e-04 TTTAT CGAGAAAA AAAACTCGTG chrIII:3322694-3322774 38 4.87e-04 TGCTTATCCT TGGAAAAA CTCAAAAATG chrII:484524-484604 2 4.87e-04 G TGGAAAAA GTTAGGCCAT chrIII:13474662-13474742 54 4.87e-04 AGGAAATTCA TGGAAAAA AAGGCGGAGC chrI:6460656-6460736 24 5.21e-04 ATAAAATTAA TGTAAAAA TCATGGAACA chrIV:17108359-17108439 19 5.97e-04 AGGGGATCTA TGAGAAAT CGATCTGCCG chrI:13470405-13470485 48 6.41e-04 GCCGGTGGCC TTGGAAAA CGCGCGTGGC chrIV:4042451-4042531 47 7.23e-04 GATTTTTTAA TTTGAAAA ATAATTTATT chrIII:11091793-11091873 26 7.23e-04 TCCTTGTGAC TGAAAAAT GACAAAAATT chrII:1500517-1500597 56 7.23e-04 TTTTAAAAAT TGAAAAAT GAAAAAGTTC chrII:3482360-3482440 1 7.23e-04 . TGAAAAAT ATCCGTGGCC chrI:4215773-4215853 57 7.23e-04 AGTCCCCGAG TGAAAAAT TGGCGCATAT chrIII:4905573-4905653 45 7.23e-04 ACAATTTCTT TTTGAAAA TTGGTTTGTT chrV:14443595-14443675 35 8.17e-04 AAATTTCACG CTCAAAAA TGCAGTCTCG chrII:7072782-7072862 30 8.17e-04 TATTATTTAA CTCAAAAA GTTATTCAAA chrII:7857670-7857750 36 8.17e-04 CAGTTTTTTT TTCGAAAT ATTCAATTAT chrI:13422622-13422702 69 8.17e-04 TGAAACCTGA TCGGAAAA ATGT chrV:1875722-1875802 25 8.77e-04 GAACGAGATC TCTGAAAA TCGAGGCAAC chrII:5819839-5819919 51 8.77e-04 ATAGAGCGCT TCTGAAAA CTCGTCCGCG chrIV:11635994-11636074 58 8.77e-04 TCTGATCAGA TCTGAAAA CCTCTCCGAA chrI:6341920-6342000 26 8.77e-04 GAGTTCAAAC TCTGAAAA CTTCTTATTT chrII:2991856-2991936 56 9.79e-04 ATAAGCTCCG CCCAAAAA CAATTCATAG chrI:9064807-9064887 14 9.79e-04 GACTCAAAAT TTTAAAAA GATTATAATT chrIV:8973673-8973753 10 9.79e-04 TGCATTCGC TTTAAAAA TCCAACGATG chrIII:8850827-8850907 59 9.79e-04 TTGGCGGAAA TTTAAAAA CGAGTTCCTC chrX:3379228-3379308 6 9.79e-04 AAGCG CCCAAAAA ATGCCGGATC chrV:16746799-16746879 28 9.79e-04 TGCATCATTT TCCGAAAT TTTCTCCCAA chrIV:1687244-1687324 38 9.79e-04 CTGGCCACGC CCAGAAAA TTTGGGAGAA chrII:9591249-9591329 16 1.12e-03 AAACGTGGGA CTAAAAAA CAATTCTAGT chrIV:10085847-10085927 66 1.12e-03 ATTGCTATAG CGGGAAAA TTCAAAT chrII:10200912-10200992 72 1.12e-03 TTAACTTGTT TTAGAAAT G chrI:3350089-3350169 20 1.12e-03 AACGTGGGAA TTAGAAAT GTGAGGGAAT chrIII:3540581-3540661 42 1.12e-03 GTTTATAGAA TCGAAAAA TGGGAGAAAC chrI:3636620-3636700 34 1.12e-03 ACTGGTTTGA CGGGAAAA GATGGGAAAC chrV:11124099-11124179 8 1.17e-03 TATCGCC CGTGAAAA CGCAAAGTGC chrV:13409218-13409298 68 1.26e-03 CTCATTCACG CGCGAAAT TCAAA chrIV:16494612-16494692 40 1.26e-03 TGATGGGCCA CCAAAAAA AAAAGACGCA chrI:4967577-4967657 25 1.26e-03 ACGCTTTTTT TCAGAAAT TTTTATGACA chrI:13418794-13418874 71 1.26e-03 AGAGGTCTCA TCAGAAAT AT chrI:2871446-2871526 33 1.26e-03 CCGTGGTGCC TCCAAAAT GCTTGTCGAA chrIII:11093820-11093900 4 1.35e-03 CTA TTAAAAAT TGATTTTTTT chrI:8255094-8255174 38 1.35e-03 CAAAATTGTA TTAAAAAT ATATAACATT chrIV:9797496-9797576 4 1.35e-03 CAA TTAAAAAT AAATTTAAAA chrI:1675985-1676065 4 1.35e-03 GCA CGGAAAAA CTCAATTTTT chrIII:9868266-9868346 48 1.40e-03 AGAATACGGC CGTAAAAA CCTCTAGTCC chrIII:11833995-11834075 62 1.65e-03 AATGTGGTTC TACGAAAA GTGAACCTAG chrIV:13487181-13487261 34 1.65e-03 AAAGAAGATC TACGAAAA GAAGATCTAC chrII:4993948-4994028 36 1.72e-03 TAGGCGGAGC TTGGAAAT TCCTAGTCCA chrIII:12218978-12219058 73 2.20e-03 GCGATTTTTT AGCAAAAA chrI:8125468-8125548 7 2.20e-03 CATCCG AGAGAAAA TGCATTCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMRAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11142229-11142309 1.9e-05 14_[+4]_58 chrI:7003577-7003657 1.9e-05 33_[+4]_39 chrII:1134526-1134606 1.9e-05 36_[+4]_36 chrI:12899351-12899431 1.9e-05 42_[+4]_30 chrII:6741560-6741640 1.9e-05 44_[+4]_28 chrIV:5371083-5371163 1.9e-05 9_[+4]_63 chrI:4958847-4958927 1.9e-05 39_[+4]_33 chrIII:10811068-10811148 1.9e-05 46_[+4]_26 chrI:12899127-12899207 1.9e-05 42_[+4]_30 chrI:1175803-1175883 7e-05 64_[+4]_8 chrIII:8700736-8700816 7e-05 24_[+4]_48 chrII:8062395-8062475 7e-05 4_[+4]_68 chrII:13117261-13117341 7e-05 10_[+4]_62 chrIII:10811276-10811356 7e-05 21_[+4]_51 chrIV:12490233-12490313 7e-05 46_[+4]_26 chrV:14423443-14423523 7e-05 41_[+4]_31 chrI:2571146-2571226 7e-05 19_[+4]_53 chrII:5836479-5836559 7e-05 6_[+4]_66 chrIV:4702237-4702317 7e-05 66_[+4]_6 chrI:1280179-1280259 7e-05 63_[+4]_9 chrIV:12268715-12268795 0.0001 23_[+4]_49 chrII:14528450-14528530 0.0001 6_[+4]_66 chrV:2697827-2697907 0.0001 16_[+4]_56 chrI:3176561-3176641 0.0001 14_[+4]_58 chrII:13279413-13279493 0.0001 7_[+4]_65 chrI:15052749-15052829 0.0001 43_[+4]_29 chrII:8137442-8137522 0.0001 33_[+4]_39 chrIV:9858272-9858352 0.00013 53_[+4]_19 chrIII:8967800-8967880 0.00013 8_[+4]_64 chrI:1213541-1213621 0.00013 72_[+4] chrII:7122966-7123046 0.00013 14_[+4]_58 chrI:636765-636845 0.00013 22_[+4]_50 chrIII:5102775-5102855 0.00015 40_[+4]_32 chrV:14443841-14443921 0.00022 11_[+4]_61 chrI:10469098-10469178 0.00022 65_[+4]_7 chrI:9393800-9393880 0.00022 55_[+4]_17 chrV:7084916-7084996 0.00022 54_[+4]_18 chrIII:7199015-7199095 0.00022 50_[+4]_22 chrI:5659154-5659234 0.00022 49_[+4]_23 chrIII:10856974-10857054 0.00022 70_[+4]_2 chrV:11933477-11933557 0.00022 38_[+4]_34 chrIV:11592946-11593026 0.00022 9_[+4]_63 chrV:5917845-5917925 0.00028 1_[+4]_71 chrX:4961659-4961739 0.00028 61_[+4]_11 chrII:15119855-15119935 0.00028 41_[+4]_31 chrIII:5190324-5190404 0.00028 43_[+4]_29 chrIII:11093618-11093698 0.00028 24_[+4]_48 chrV:14133113-14133193 0.00035 24_[+4]_48 chrI:5118891-5118971 0.00035 23_[+4]_49 chrV:2603178-2603258 0.00035 65_[+4]_7 chrII:5594428-5594508 0.00035 11_[+4]_61 chrIII:9808294-9808374 0.00035 40_[+4]_32 chrI:4769367-4769447 0.00037 52_[+4]_20 chrII:6776788-6776868 0.00046 12_[+4]_60 chrII:4603196-4603276 0.00046 40_[+4]_32 chrV:20090819-20090899 0.00046 8_[+4]_64 chrIII:4343301-4343381 0.00046 32_[+4]_40 chrII:6734825-6734905 0.00046 43_[+4]_29 chrV:4536001-4536081 0.00046 5_[+4]_67 chrIII:3322694-3322774 0.00049 37_[+4]_35 chrII:484524-484604 0.00049 1_[+4]_71 chrIII:13474662-13474742 0.00049 53_[+4]_19 chrI:6460656-6460736 0.00052 23_[+4]_49 chrIV:17108359-17108439 0.0006 18_[+4]_54 chrI:13470405-13470485 0.00064 47_[+4]_25 chrIV:4042451-4042531 0.00072 46_[+4]_26 chrIII:11091793-11091873 0.00072 25_[+4]_47 chrII:1500517-1500597 0.00072 55_[+4]_17 chrII:3482360-3482440 0.00072 [+4]_72 chrI:4215773-4215853 0.00072 56_[+4]_16 chrIII:4905573-4905653 0.00072 44_[+4]_28 chrV:14443595-14443675 0.00082 34_[+4]_38 chrII:7072782-7072862 0.00082 29_[+4]_43 chrII:7857670-7857750 0.00082 35_[+4]_37 chrI:13422622-13422702 0.00082 68_[+4]_4 chrV:1875722-1875802 0.00088 24_[+4]_48 chrII:5819839-5819919 0.00088 50_[+4]_22 chrIV:11635994-11636074 0.00088 57_[+4]_15 chrI:6341920-6342000 0.00088 25_[+4]_47 chrII:2991856-2991936 0.00098 55_[+4]_17 chrI:9064807-9064887 0.00098 13_[+4]_59 chrIV:8973673-8973753 0.00098 9_[+4]_63 chrIII:8850827-8850907 0.00098 58_[+4]_14 chrX:3379228-3379308 0.00098 5_[+4]_67 chrV:16746799-16746879 0.00098 27_[+4]_45 chrIV:1687244-1687324 0.00098 37_[+4]_35 chrII:9591249-9591329 0.0011 15_[+4]_57 chrIV:10085847-10085927 0.0011 65_[+4]_7 chrII:10200912-10200992 0.0011 71_[+4]_1 chrI:3350089-3350169 0.0011 19_[+4]_53 chrIII:3540581-3540661 0.0011 41_[+4]_31 chrI:3636620-3636700 0.0011 33_[+4]_39 chrV:11124099-11124179 0.0012 7_[+4]_65 chrV:13409218-13409298 0.0013 67_[+4]_5 chrIV:16494612-16494692 0.0013 39_[+4]_33 chrI:4967577-4967657 0.0013 24_[+4]_48 chrI:13418794-13418874 0.0013 70_[+4]_2 chrI:2871446-2871526 0.0013 32_[+4]_40 chrIII:11093820-11093900 0.0013 3_[+4]_69 chrI:8255094-8255174 0.0013 37_[+4]_35 chrIV:9797496-9797576 0.0013 3_[+4]_69 chrI:1675985-1676065 0.0013 3_[+4]_69 chrIII:9868266-9868346 0.0014 47_[+4]_25 chrIII:11833995-11834075 0.0017 61_[+4]_11 chrIV:13487181-13487261 0.0017 33_[+4]_39 chrII:4993948-4994028 0.0017 35_[+4]_37 chrIII:12218978-12219058 0.0022 72_[+4] chrI:8125468-8125548 0.0022 6_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMRAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKMRAAAA width=8 seqs=108 chrIII:11142229-11142309 ( 15) TGCGAAAA 1 chrI:7003577-7003657 ( 34) TGCGAAAA 1 chrII:1134526-1134606 ( 37) TGCGAAAA 1 chrI:12899351-12899431 ( 43) TGCGAAAA 1 chrII:6741560-6741640 ( 45) TGCGAAAA 1 chrIV:5371083-5371163 ( 10) TGCGAAAA 1 chrI:4958847-4958927 ( 40) TGCGAAAA 1 chrIII:10811068-10811148 ( 47) TGCGAAAA 1 chrI:12899127-12899207 ( 43) TGCGAAAA 1 chrI:1175803-1175883 ( 65) TGCAAAAA 1 chrIII:8700736-8700816 ( 25) TGCAAAAA 1 chrII:8062395-8062475 ( 5) TGCAAAAA 1 chrII:13117261-13117341 ( 11) TGAGAAAA 1 chrIII:10811276-10811356 ( 22) TGAGAAAA 1 chrIV:12490233-12490313 ( 47) TGAGAAAA 1 chrV:14423443-14423523 ( 42) TGAGAAAA 1 chrI:2571146-2571226 ( 20) TGCAAAAA 1 chrII:5836479-5836559 ( 7) TGAGAAAA 1 chrIV:4702237-4702317 ( 67) TGAGAAAA 1 chrI:1280179-1280259 ( 64) TGAGAAAA 1 chrIV:12268715-12268795 ( 24) TGAAAAAA 1 chrII:14528450-14528530 ( 7) TGAAAAAA 1 chrV:2697827-2697907 ( 17) TGAAAAAA 1 chrI:3176561-3176641 ( 15) TGAAAAAA 1 chrII:13279413-13279493 ( 8) TGAAAAAA 1 chrI:15052749-15052829 ( 44) TGAAAAAA 1 chrII:8137442-8137522 ( 34) TGAAAAAA 1 chrIV:9858272-9858352 ( 54) TTCGAAAA 1 chrIII:8967800-8967880 ( 9) TTCGAAAA 1 chrI:1213541-1213621 ( 73) TTCGAAAA 1 chrII:7122966-7123046 ( 15) TTCGAAAA 1 chrI:636765-636845 ( 23) TTCGAAAA 1 chrIII:5102775-5102855 ( 41) TCCGAAAA 1 chrV:14443841-14443921 ( 12) TTAGAAAA 1 chrI:10469098-10469178 ( 66) TTCAAAAA 1 chrI:9393800-9393880 ( 56) TTCAAAAA 1 chrV:7084916-7084996 ( 55) TTCAAAAA 1 chrIII:7199015-7199095 ( 51) TTCAAAAA 1 chrI:5659154-5659234 ( 50) TTCAAAAA 1 chrIII:10856974-10857054 ( 71) TTCAAAAA 1 chrV:11933477-11933557 ( 39) TTCAAAAA 1 chrIV:11592946-11593026 ( 10) TTCAAAAA 1 chrV:5917845-5917925 ( 2) TCCAAAAA 1 chrX:4961659-4961739 ( 62) TCAGAAAA 1 chrII:15119855-15119935 ( 42) TCCAAAAA 1 chrIII:5190324-5190404 ( 44) CGCGAAAA 1 chrIII:11093618-11093698 ( 25) TCCAAAAA 1 chrV:14133113-14133193 ( 25) TTAAAAAA 1 chrI:5118891-5118971 ( 24) TTAAAAAA 1 chrV:2603178-2603258 ( 66) TGGGAAAA 1 chrII:5594428-5594508 ( 12) TTAAAAAA 1 chrIII:9808294-9808374 ( 41) TTAAAAAA 1 chrI:4769367-4769447 ( 53) TGTGAAAA 1 chrII:6776788-6776868 ( 13) CGCAAAAA 1 chrII:4603196-4603276 ( 41) CGAGAAAA 1 chrV:20090819-20090899 ( 9) TCAAAAAA 1 chrIII:4343301-4343381 ( 33) TGCGAAAT 1 chrII:6734825-6734905 ( 44) CGAGAAAA 1 chrV:4536001-4536081 ( 6) CGAGAAAA 1 chrIII:3322694-3322774 ( 38) TGGAAAAA 1 chrII:484524-484604 ( 2) TGGAAAAA 1 chrIII:13474662-13474742 ( 54) TGGAAAAA 1 chrI:6460656-6460736 ( 24) TGTAAAAA 1 chrIV:17108359-17108439 ( 19) TGAGAAAT 1 chrI:13470405-13470485 ( 48) TTGGAAAA 1 chrIV:4042451-4042531 ( 47) TTTGAAAA 1 chrIII:11091793-11091873 ( 26) TGAAAAAT 1 chrII:1500517-1500597 ( 56) TGAAAAAT 1 chrII:3482360-3482440 ( 1) TGAAAAAT 1 chrI:4215773-4215853 ( 57) TGAAAAAT 1 chrIII:4905573-4905653 ( 45) TTTGAAAA 1 chrV:14443595-14443675 ( 35) CTCAAAAA 1 chrII:7072782-7072862 ( 30) CTCAAAAA 1 chrII:7857670-7857750 ( 36) TTCGAAAT 1 chrI:13422622-13422702 ( 69) TCGGAAAA 1 chrV:1875722-1875802 ( 25) TCTGAAAA 1 chrII:5819839-5819919 ( 51) TCTGAAAA 1 chrIV:11635994-11636074 ( 58) TCTGAAAA 1 chrI:6341920-6342000 ( 26) TCTGAAAA 1 chrII:2991856-2991936 ( 56) CCCAAAAA 1 chrI:9064807-9064887 ( 14) TTTAAAAA 1 chrIV:8973673-8973753 ( 10) TTTAAAAA 1 chrIII:8850827-8850907 ( 59) TTTAAAAA 1 chrX:3379228-3379308 ( 6) CCCAAAAA 1 chrV:16746799-16746879 ( 28) TCCGAAAT 1 chrIV:1687244-1687324 ( 38) CCAGAAAA 1 chrII:9591249-9591329 ( 16) CTAAAAAA 1 chrIV:10085847-10085927 ( 66) CGGGAAAA 1 chrII:10200912-10200992 ( 72) TTAGAAAT 1 chrI:3350089-3350169 ( 20) TTAGAAAT 1 chrIII:3540581-3540661 ( 42) TCGAAAAA 1 chrI:3636620-3636700 ( 34) CGGGAAAA 1 chrV:11124099-11124179 ( 8) CGTGAAAA 1 chrV:13409218-13409298 ( 68) CGCGAAAT 1 chrIV:16494612-16494692 ( 40) CCAAAAAA 1 chrI:4967577-4967657 ( 25) TCAGAAAT 1 chrI:13418794-13418874 ( 71) TCAGAAAT 1 chrI:2871446-2871526 ( 33) TCCAAAAT 1 chrIII:11093820-11093900 ( 4) TTAAAAAT 1 chrI:8255094-8255174 ( 38) TTAAAAAT 1 chrIV:9797496-9797576 ( 4) TTAAAAAT 1 chrI:1675985-1676065 ( 4) CGGAAAAA 1 chrIII:9868266-9868346 ( 48) CGTAAAAA 1 chrIII:11833995-11834075 ( 62) TACGAAAA 1 chrIV:13487181-13487261 ( 34) TACGAAAA 1 chrII:4993948-4994028 ( 36) TTGGAAAT 1 chrIII:12218978-12219058 ( 73) AGCAAAAA 1 chrI:8125468-8125548 ( 7) AGAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMRAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.59116 E= 2.8e-010 -395 -36 -1340 152 -395 -21 117 14 37 93 -107 -124 77 -1340 125 -1340 180 -1340 -1340 -1340 180 -1340 -1340 -1340 180 -1340 -1340 -1340 154 -1340 -1340 -77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMRAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 108 E= 2.8e-010 0.018519 0.166667 0.000000 0.814815 0.018519 0.185185 0.481481 0.314815 0.370370 0.407407 0.101852 0.120370 0.490741 0.000000 0.509259 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMRAAAA MEME-4 regular expression -------------------------------------------------------------------------------- T[GT][CA][GA]AAAA -------------------------------------------------------------------------------- Time 17.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGGWSTM MEME-5 width = 8 sites = 33 llr = 287 E-value = 3.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGGWSTM MEME-5 Description -------------------------------------------------------------------------------- Simplified A :7::6::6 pos.-specific C :::::4:4 probability G a:aa:6:: matrix T :3::4:a: bits 2.2 * ** 2.0 * ** 1.8 * ** * 1.6 * ** * Relative 1.3 * ** ** Entropy 1.1 * ** ** (12.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGGAGTA consensus T TC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGWSTM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13409218-13409298 30 2.47e-05 AATTGTCCGA GAGGAGTA CACGGCCGAG chrV:16401680-16401760 70 2.47e-05 ACTCCTCTCG GAGGAGTA TTT chrII:6061653-6061733 21 2.47e-05 TCTTGTCCGT GAGGAGTA CACGGCTGAT chrV:5917845-5917925 28 2.47e-05 GCTTATCCTA GAGGAGTA CACGGTCGTG chrII:4603196-4603276 20 2.47e-05 CTACTTCCAA GAGGAGTA CACACGAGGT chrIII:4912482-4912562 22 2.47e-05 TCTTGTCCGA GAGGAGTA CACGACATTC chrI:853252-853332 58 2.47e-05 CATTCGACGT GAGGAGTC TCGGAGTCTC chrV:11029444-11029524 15 2.47e-05 ATTTATCCGA GAGGAGTA CACTAGTGGT chrII:10538114-10538194 9 2.47e-05 TTATCCGA GAGGAGTA CATGGCCGAT chrV:15082440-15082520 40 2.47e-05 AATTGTCTAG GAGGAGTA CACGGTTGTC chrIII:8144720-8144800 44 2.47e-05 CTCTGTCCGA GAGGAGTA CACACAGCGC chrII:6097617-6097697 15 2.47e-05 AGTTTCCCTG GAGGAGTA CACGGCCGAG chrIII:12673531-12673611 17 2.47e-05 GTTTGTCCTA GAGGAGTA CACGGCGTGG chrIII:9868266-9868346 26 7.38e-05 TATTTTCCGA GAGGACTC CGCCAGAATA chrIV:4070925-4071005 48 7.38e-05 TGGAGTTCGT GAGGTGTC GCGCAAGCGC chrI:13470405-13470485 26 7.38e-05 AGTTATCCGA GAGGACTA CACGGCCGGT chrI:2487861-2487941 15 7.38e-05 GGGAGTTCGT GAGGTGTC AGCAAGCGCG chrIII:11142229-11142309 58 1.23e-04 CGAAAACAGC GAGGTCTC ATGAAATTGC chrI:4967577-4967657 44 1.23e-04 TTTATGACAC GAGGTCTC ACAGGCCTCT chrII:6741560-6741640 60 1.23e-04 AAATTGTTGC GAGGTCTC CCAAGCAAAC chrM:3596-3676 24 1.23e-04 CTTTGTAGAG GAGGTCTA TTACAATTTT chrX:3379228-3379308 31 1.23e-04 ATCACTCCGA GTGGAGTA CGTGCGCGAT chrI:13418794-13418874 62 1.23e-04 CAATTTTTGA GAGGTCTC ATCAGAAATA chrV:10031922-10032002 19 1.23e-04 AATTGTCCGA GTGGAGTA CACGGCCGTG chrI:1280179-1280259 14 1.23e-04 ATAGTTCCGT GAGGTCTC CTTATTTTTA chrIV:17108359-17108439 69 1.23e-04 CGCTTTCCGT GAGGTCTC CGTG chrII:8062395-8062475 14 1.72e-04 CTGCAAAAAT GTGGTGTC TCGGTAGTGC chrI:6252933-6253013 19 1.72e-04 TCGAATTTCT GTGGTGTC TCACGCAACG chrII:6734825-6734905 32 1.72e-04 CTCTTGGTTT GTGGTGTC TCAACGAGAA chrI:9393800-9393880 3 1.72e-04 GC GTGGACTA CACGACATGC chrIV:17099300-17099380 50 1.72e-04 CTCTTTTCCC GTGGTGTC TCCTCTCCTC chrI:6760295-6760375 7 1.72e-04 CACCTC GTGGACTA GTTTCCACAT chrI:10161987-10162067 65 1.72e-04 TGTACTCCTC GTGGACTA ATCCATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGWSTM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13409218-13409298 2.5e-05 29_[+5]_43 chrV:16401680-16401760 2.5e-05 69_[+5]_3 chrII:6061653-6061733 2.5e-05 20_[+5]_52 chrV:5917845-5917925 2.5e-05 27_[+5]_45 chrII:4603196-4603276 2.5e-05 19_[+5]_53 chrIII:4912482-4912562 2.5e-05 21_[+5]_51 chrI:853252-853332 2.5e-05 57_[+5]_15 chrV:11029444-11029524 2.5e-05 14_[+5]_58 chrII:10538114-10538194 2.5e-05 8_[+5]_64 chrV:15082440-15082520 2.5e-05 39_[+5]_33 chrIII:8144720-8144800 2.5e-05 43_[+5]_29 chrII:6097617-6097697 2.5e-05 14_[+5]_58 chrIII:12673531-12673611 2.5e-05 16_[+5]_56 chrIII:9868266-9868346 7.4e-05 25_[+5]_47 chrIV:4070925-4071005 7.4e-05 47_[+5]_25 chrI:13470405-13470485 7.4e-05 25_[+5]_47 chrI:2487861-2487941 7.4e-05 14_[+5]_58 chrIII:11142229-11142309 0.00012 57_[+5]_15 chrI:4967577-4967657 0.00012 43_[+5]_29 chrII:6741560-6741640 0.00012 59_[+5]_13 chrM:3596-3676 0.00012 23_[+5]_49 chrX:3379228-3379308 0.00012 30_[+5]_42 chrI:13418794-13418874 0.00012 61_[+5]_11 chrV:10031922-10032002 0.00012 18_[+5]_54 chrI:1280179-1280259 0.00012 13_[+5]_59 chrIV:17108359-17108439 0.00012 68_[+5]_4 chrII:8062395-8062475 0.00017 13_[+5]_59 chrI:6252933-6253013 0.00017 18_[+5]_54 chrII:6734825-6734905 0.00017 31_[+5]_41 chrI:9393800-9393880 0.00017 2_[+5]_70 chrIV:17099300-17099380 0.00017 49_[+5]_23 chrI:6760295-6760375 0.00017 6_[+5]_66 chrI:10161987-10162067 0.00017 64_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGWSTM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGGWSTM width=8 seqs=33 chrV:13409218-13409298 ( 30) GAGGAGTA 1 chrV:16401680-16401760 ( 70) GAGGAGTA 1 chrII:6061653-6061733 ( 21) GAGGAGTA 1 chrV:5917845-5917925 ( 28) GAGGAGTA 1 chrII:4603196-4603276 ( 20) GAGGAGTA 1 chrIII:4912482-4912562 ( 22) GAGGAGTA 1 chrI:853252-853332 ( 58) GAGGAGTC 1 chrV:11029444-11029524 ( 15) GAGGAGTA 1 chrII:10538114-10538194 ( 9) GAGGAGTA 1 chrV:15082440-15082520 ( 40) GAGGAGTA 1 chrIII:8144720-8144800 ( 44) GAGGAGTA 1 chrII:6097617-6097697 ( 15) GAGGAGTA 1 chrIII:12673531-12673611 ( 17) GAGGAGTA 1 chrIII:9868266-9868346 ( 26) GAGGACTC 1 chrIV:4070925-4071005 ( 48) GAGGTGTC 1 chrI:13470405-13470485 ( 26) GAGGACTA 1 chrI:2487861-2487941 ( 15) GAGGTGTC 1 chrIII:11142229-11142309 ( 58) GAGGTCTC 1 chrI:4967577-4967657 ( 44) GAGGTCTC 1 chrII:6741560-6741640 ( 60) GAGGTCTC 1 chrM:3596-3676 ( 24) GAGGTCTA 1 chrX:3379228-3379308 ( 31) GTGGAGTA 1 chrI:13418794-13418874 ( 62) GAGGTCTC 1 chrV:10031922-10032002 ( 19) GTGGAGTA 1 chrI:1280179-1280259 ( 14) GAGGTCTC 1 chrIV:17108359-17108439 ( 69) GAGGTCTC 1 chrII:8062395-8062475 ( 14) GTGGTGTC 1 chrI:6252933-6253013 ( 19) GTGGTGTC 1 chrII:6734825-6734905 ( 32) GTGGTGTC 1 chrI:9393800-9393880 ( 3) GTGGACTA 1 chrIV:17099300-17099380 ( 50) GTGGTGTC 1 chrI:6760295-6760375 ( 7) GTGGACTA 1 chrI:10161987-10162067 ( 65) GTGGACTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGWSTM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 3.1e-005 -1169 -1169 222 -1169 134 -1169 -1169 -6 -1169 -1169 222 -1169 -1169 -1169 222 -1169 108 -1169 -1169 47 -1169 76 157 -1169 -1169 -1169 -1169 181 100 99 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGWSTM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.1e-005 0.000000 0.000000 1.000000 0.000000 0.727273 0.000000 0.000000 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.606061 0.000000 0.000000 0.393939 0.000000 0.363636 0.636364 0.000000 0.000000 0.000000 0.000000 1.000000 0.575758 0.424242 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGWSTM MEME-5 regular expression -------------------------------------------------------------------------------- G[AT]GG[AT][GC]T[AC] -------------------------------------------------------------------------------- Time 21.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:17108359-17108439 3.06e-02 80 chrIV:13487181-13487261 3.70e-01 80 chrIV:12653246-12653326 2.22e-04 41_[+1(2.99e-05)]_20_[+2(1.05e-05)]_\ 3 chrIII:11093618-11093698 2.78e-02 80 chrIII:13474662-13474742 2.34e-01 80 chrII:8137442-8137522 2.46e-01 80 chrV:20832717-20832797 9.84e-01 80 chrI:1280179-1280259 1.14e-02 63_[+4(6.98e-05)]_9 chrI:13422622-13422702 5.03e-02 44_[+3(7.33e-05)]_28 chrV:3218740-3218820 2.19e-01 80 chrV:4536001-4536081 7.54e-02 80 chrIII:2697387-2697467 3.30e-01 80 chrV:16553081-16553161 9.99e-01 80 chrI:2487861-2487941 3.30e-02 14_[+5(7.38e-05)]_58 chrI:2710621-2710701 6.60e-02 80 chrIII:9808294-9808374 3.61e-01 80 chrIV:1687244-1687324 2.54e-02 28_[+1(4.36e-05)]_44 chrI:636765-636845 1.04e-06 33_[+1(5.73e-05)]_16_[+2(4.61e-05)]_\ [+1(4.40e-06)]_7 chrV:16746799-16746879 5.92e-01 80 chrI:1675985-1676065 1.48e-01 80 chrV:10031922-10032002 3.06e-04 28_[+1(3.58e-05)]_44 chrV:156206-156286 9.23e-06 42_[+2(1.05e-05)]_10_[+3(1.39e-05)]_\ 12 chrIII:12218777-12218857 9.51e-01 80 chrI:10161987-10162067 7.69e-05 12_[+1(5.73e-05)]_36_[+3(1.39e-05)]_\ 16 chrI:15052749-15052829 2.65e-01 80 chrIV:11592946-11593026 8.56e-05 49_[+2(6.71e-05)]_23 chrII:2794515-2794595 5.79e-01 80 chrI:12899127-12899207 2.60e-02 27_[+4(6.98e-05)]_7_[+4(1.90e-05)]_\ 22_[+4(1.90e-05)] chrIV:13289508-13289588 6.32e-04 40_[+1(4.40e-06)]_32 chrV:4181854-4181934 5.02e-01 80 chrIII:8250382-8250462 1.81e-01 80 chrIII:11848482-11848562 2.69e-01 80 chrV:11933477-11933557 5.65e-01 80 chrI:7251607-7251687 8.06e-01 80 chrI:2871446-2871526 8.65e-02 80 chrV:265393-265473 5.32e-01 80 chrII:5594428-5594508 5.19e-01 80 chrV:2603178-2603258 5.15e-04 27_[+2(5.66e-05)]_45 chrII:8137650-8137730 8.05e-01 80 chrIII:10064305-10064385 1.02e-04 11_[+1(2.99e-05)]_1_[+1(5.73e-05)]_\ 52 chrIII:12673531-12673611 1.48e-05 16_[+5(2.47e-05)]_10_[+1(2.99e-05)]_\ 7_[+2(1.84e-05)]_23 chrIII:10856974-10857054 9.21e-02 80 chrIII:10811068-10811148 1.07e-01 31_[+4(6.98e-05)]_7_[+4(1.90e-05)]_\ 26 chrIV:12621617-12621697 6.88e-01 80 chrI:6341920-6342000 3.97e-01 80 chrI:13421180-13421260 7.57e-01 80 chrV:16022769-16022849 2.11e-05 33_[+1(1.03e-05)]_[+1(1.03e-05)]_15_\ [+2(1.05e-05)]_8 chrIV:6747830-6747910 9.76e-03 80 chrIII:4905573-4905653 4.49e-01 80 chrI:11222150-11222230 8.66e-04 28_[+2(4.61e-05)]_[+1(2.99e-05)]_36 chrIII:11832798-11832878 1.78e-01 80 chrII:6097617-6097697 3.36e-06 14_[+5(2.47e-05)]_2_[+1(1.62e-05)]_\ 24_[+2(1.84e-05)]_16 chrI:13418794-13418874 2.49e-02 80 chrI:4958847-4958927 3.56e-02 39_[+4(1.90e-05)]_33 chrI:5659154-5659234 1.05e-03 18_[+2(1.05e-05)]_54 chrII:2378726-2378806 9.98e-01 80 chrIV:9797496-9797576 4.12e-04 67_[+2(1.05e-05)]_5 chrIII:3424100-3424180 4.61e-01 80 chrIV:4702237-4702317 1.54e-01 66_[+4(6.98e-05)]_6 chrX:7798503-7798583 2.50e-03 19_[+1(5.73e-05)]_53 chrIII:7199015-7199095 4.87e-04 25_[+1(2.99e-05)]_47 chrI:78044-78124 1.66e-03 46_[+1(2.99e-05)]_8_[+1(2.99e-05)]_\ 10 chrII:5836479-5836559 1.08e-01 6_[+4(6.98e-05)]_66 chrX:3379228-3379308 7.56e-04 65_[+1(2.99e-05)]_7 chrX:7569782-7569862 1.01e-04 55_[+1(4.40e-06)]_17 chrIII:3476409-3476489 2.18e-01 80 chrII:13279413-13279493 1.13e-01 80 chrI:3176561-3176641 5.71e-04 45_[+2(9.34e-05)]_27 chrI:8125468-8125548 2.83e-01 80 chrII:7857670-7857750 7.89e-01 80 chrI:5118891-5118971 5.67e-04 80 chrI:7676275-7676355 9.61e-01 80 chrII:5873909-5873989 9.67e-01 80 chrM:3596-3676 9.39e-02 80 chrI:6760295-6760375 3.51e-05 23_[+1(2.99e-05)]_10_[+3(1.39e-05)]_\ 31 chrIII:8144720-8144800 5.12e-03 43_[+5(2.47e-05)]_29 chrIII:7858574-7858654 1.17e-02 32_[+2(1.05e-05)]_40 chrI:4215773-4215853 5.57e-02 80 chrIII:3499984-3500064 1.66e-01 80 chrII:14857069-14857149 4.51e-04 24_[+1(2.99e-05)]_35_[+2(1.84e-05)]_\ 5 chrI:8255094-8255174 8.32e-01 80 chrV:10320322-10320402 2.17e-06 25_[+2(1.05e-05)]_[+1(2.99e-05)]_6_\ [+2(1.84e-05)]_2_[+3(1.39e-05)]_15 chrIII:13293143-13293223 9.66e-01 80 chrIV:17099300-17099380 1.87e-02 80 chrIII:9465615-9465695 2.90e-04 45_[+2(1.05e-05)]_27 chrIII:4862092-4862172 9.60e-01 80 chrII:7122966-7123046 2.59e-01 80 chrIV:5371083-5371163 1.51e-02 9_[+4(1.90e-05)]_63 chrII:15089601-15089681 7.48e-06 7_[+2(1.05e-05)]_2_[+1(3.58e-05)]_\ [+3(3.83e-05)]_47 chrI:2144111-2144191 9.59e-01 80 chrIV:12621821-12621901 4.02e-01 80 chrIII:4196745-4196825 3.01e-03 80 chrM:10194-10274 8.45e-01 80 chrII:3482360-3482440 2.40e-03 13_[+1(1.03e-05)]_59 chrII:1500517-1500597 5.33e-01 80 chrIV:11315059-11315139 4.67e-02 27_[+1(3.58e-05)]_45 chrIII:11286261-11286341 7.61e-02 16_[+1(2.99e-05)]_56 chrV:7084916-7084996 9.26e-04 13_[+2(3.21e-05)]_59 chrX:9917541-9917621 2.50e-04 15_[+2(1.05e-05)]_57 chrII:484524-484604 4.55e-02 80 chrM:10832-10912 6.17e-01 80 chrII:6741560-6741640 4.15e-03 44_[+4(1.90e-05)]_28 chrI:1213541-1213621 3.00e-01 80 chrI:2571146-2571226 8.65e-02 19_[+4(6.98e-05)]_53 chrV:14423443-14423523 1.28e-01 41_[+4(6.98e-05)]_31 chrIV:12490233-12490313 1.27e-01 46_[+4(6.98e-05)]_26 chrIV:7816583-7816663 2.96e-02 80 chrI:9393800-9393880 7.22e-04 80 chrI:12899351-12899431 2.10e-01 12_[+4(1.90e-05)]_7_[+4(6.98e-05)]_\ 7_[+4(1.90e-05)]_7_[+4(6.98e-05)]_7_[+4(6.98e-05)] chrV:2697827-2697907 5.08e-02 80 chrIII:10811276-10811356 2.29e-01 21_[+4(6.98e-05)]_51 chrIV:16944511-16944591 5.08e-01 80 chrII:7072782-7072862 6.46e-01 80 chrI:3636620-3636700 6.98e-05 51_[+2(1.05e-05)]_21 chrI:5281810-5281890 7.69e-04 30_[+2(1.84e-05)]_42 chrI:4967577-4967657 3.20e-02 80 chrIV:11635795-11635875 9.99e-01 80 chrI:10469098-10469178 2.72e-01 80 chrII:6734825-6734905 3.93e-02 80 chrIII:1540282-1540362 6.52e-03 1_[+1(1.03e-05)]_71 chrIII:11091793-11091873 6.07e-01 80 chrV:6107626-6107706 2.40e-02 80 chrI:6252933-6253013 3.37e-01 80 chrIII:13187897-13187977 1.66e-02 80 chrM:1835-1915 9.21e-01 80 chrII:476162-476242 7.03e-02 61_[+1(5.73e-05)]_11 chrIV:12094011-12094091 6.75e-03 23_[+1(7.89e-05)]_27_[+2(8.55e-05)]_\ 14 chrI:15014028-15014108 1.08e-02 6_[+2(1.05e-05)]_66 chrV:14443595-14443675 2.20e-01 80 chrIII:3540581-3540661 5.45e-01 80 chrIV:4042451-4042531 6.33e-02 80 chrII:8039578-8039658 6.07e-03 42_[+1(2.99e-05)]_30 chrV:15082440-15082520 4.50e-05 39_[+5(2.47e-05)]_15_[+2(2.62e-05)]_\ 10 chrM:2985-3065 6.30e-02 42_[+2(5.66e-05)]_30 chrIV:16995584-16995664 2.77e-03 29_[+1(2.99e-05)]_43 chrIII:5190324-5190404 2.88e-05 67_[+2(3.21e-05)]_5 chrIII:4343301-4343381 4.96e-03 80 chrII:13117261-13117341 4.47e-07 10_[+4(6.98e-05)]_35_[+2(1.05e-05)]_\ 9_[+3(1.39e-05)]_2 chrII:10538114-10538194 1.99e-07 8_[+5(2.47e-05)]_18_[+2(3.21e-05)]_\ 2_[+3(1.39e-05)]_28 chrIII:8850827-8850907 5.86e-04 28_[+2(1.05e-05)]_44 chrV:11029444-11029524 1.52e-03 14_[+5(2.47e-05)]_38_[+1(5.73e-05)]_\ 12 chrI:6407343-6407423 3.29e-01 80 chrIV:3803406-3803486 2.66e-04 68_[+3(1.39e-05)]_4 chrV:10441239-10441319 1.84e-04 41_[+1(1.03e-05)]_21_[+3(1.39e-05)]_\ 2 chrI:853252-853332 1.24e-01 57_[+5(2.47e-05)]_15 chrV:20090819-20090899 4.83e-03 53_[+1(1.03e-05)]_19 chrIV:11635994-11636074 1.58e-01 80 chrV:14443841-14443921 3.22e-01 80 chrIV:8973673-8973753 6.89e-05 58_[+2(6.71e-05)]_2_[+1(3.58e-05)]_\ 4 chrII:4791435-4791515 5.58e-06 35_[+2(3.21e-05)]_1_[+1(3.58e-05)]_\ [+3(1.39e-05)]_20 chrIII:8967800-8967880 1.65e-06 19_[+1(1.03e-05)]_21_[+2(1.84e-05)]_\ 11_[+2(4.61e-05)]_5 chrI:402985-403065 9.08e-01 80 chrV:20424932-20425012 3.10e-02 80 chrI:14756441-14756521 8.44e-03 32_[+2(9.34e-05)]_40 chrII:1134526-1134606 1.42e-01 21_[+4(6.98e-05)]_7_[+4(1.90e-05)]_\ 36 chrII:2752707-2752787 6.67e-04 61_[+2(1.05e-05)]_11 chrV:18981157-18981237 2.42e-05 30_[+2(1.05e-05)]_9_[+3(1.39e-05)]_\ 25 chrIV:4712595-4712675 1.81e-04 26_[+2(1.84e-05)]_2_[+1(2.99e-05)]_\ 4_[+2(1.84e-05)]_24 chrI:3350089-3350169 8.19e-01 80 chrII:10200912-10200992 4.61e-03 30_[+1(5.73e-05)]_42 chrII:8297404-8297484 7.14e-01 80 chrIV:12559180-12559260 9.91e-01 80 chrX:9296724-9296804 2.11e-02 34_[+3(2.44e-05)]_38 chrI:12773350-12773430 5.53e-01 80 chrII:12042384-12042464 2.36e-01 80 chrX:16376145-16376225 2.29e-03 80 chrI:7003577-7003657 1.02e-01 33_[+4(1.90e-05)]_7_[+4(1.90e-05)]_\ 24 chrM:7274-7354 3.88e-01 80 chrIV:9858272-9858352 5.13e-02 80 chrI:9064807-9064887 7.75e-01 80 chrIV:6632001-6632081 1.88e-04 5_[+1(3.58e-05)]_67 chrIV:3899985-3900065 5.98e-01 80 chrIII:4912482-4912562 2.71e-05 21_[+5(2.47e-05)]_15_[+2(3.21e-05)]_\ 28 chrI:479587-479667 6.23e-01 80 chrIV:10085847-10085927 5.04e-01 80 chrI:13422824-13422904 6.28e-01 80 chrIV:7948496-7948576 6.80e-01 80 chrII:4993948-4994028 9.43e-04 45_[+2(4.61e-05)]_27 chrI:10026024-10026104 4.86e-01 80 chrIII:11833995-11834075 8.45e-01 80 chrIII:5308377-5308457 1.15e-01 80 chrII:15119855-15119935 3.96e-01 80 chrI:1034324-1034404 2.67e-03 66_[+2(1.05e-05)]_6 chrII:4603196-4603276 3.60e-04 19_[+5(2.47e-05)]_53 chrII:5819839-5819919 1.63e-03 58_[+2(8.55e-05)]_14 chrV:14133113-14133193 1.95e-04 64_[+2(1.05e-05)]_8 chrI:13470405-13470485 7.98e-06 25_[+5(7.38e-05)]_28_[+1(1.03e-05)]_\ 11 chrIII:640531-640611 6.44e-01 80 chrIII:5068943-5069023 4.68e-03 32_[+1(1.03e-05)]_40 chrIV:2033186-2033266 7.62e-01 80 chrM:9118-9198 3.84e-01 80 chrX:4961659-4961739 4.52e-01 80 chrI:13835183-13835263 3.01e-03 25_[+1(1.03e-05)]_12_[+2(8.55e-05)]_\ 27 chrII:14480103-14480183 7.80e-01 80 chrI:8511431-8511511 1.50e-03 25_[+2(1.05e-05)]_47 chrI:4769367-4769447 1.70e-01 80 chrIV:1687445-1687525 1.87e-03 15_[+1(4.36e-05)]_57 chrV:9583082-9583162 5.61e-01 80 chrIV:12617488-12617568 3.06e-01 80 chrIV:4070925-4071005 1.20e-01 47_[+5(7.38e-05)]_25 chrII:14528450-14528530 3.57e-01 80 chrIV:1347158-1347238 2.30e-02 26_[+3(1.39e-05)]_46 chrM:6026-6106 6.63e-01 80 chrI:4959071-4959151 8.57e-01 80 chrI:6460656-6460736 4.06e-01 80 chrIV:16494612-16494692 1.09e-01 80 chrM:8294-8374 5.00e-01 80 chrII:8062395-8062475 3.92e-04 4_[+4(6.98e-05)]_68 chrII:6776788-6776868 2.42e-02 80 chrI:1415969-1416049 6.84e-01 80 chrIII:7088082-7088162 1.02e-05 12_[+2(9.34e-05)]_9_[+2(1.84e-05)]_\ 9_[+3(2.44e-05)]_26 chrIII:11746879-11746959 1.93e-03 65_[+3(1.39e-05)]_7 chrIV:3988769-3988849 2.28e-01 80 chrIII:9868266-9868346 1.54e-05 25_[+5(7.38e-05)]_25_[+2(6.71e-05)]_\ 14 chrI:27072-27152 3.37e-01 80 chrI:7772577-7772657 6.52e-01 80 chrM:4605-4685 9.93e-01 80 chrIII:11093820-11093900 5.59e-01 80 chrIV:410642-410722 9.62e-01 80 chrIII:5102775-5102855 1.06e-01 80 chrIII:8700736-8700816 1.12e-01 24_[+4(6.98e-05)]_48 chrIII:5803104-5803184 2.61e-04 14_[+1(1.03e-05)]_15_[+1(1.62e-05)]_\ 35 chrV:10356096-10356176 3.05e-03 41_[+2(1.05e-05)]_31 chrII:6383360-6383440 2.42e-01 80 chrIII:10123785-10123865 6.00e-01 80 chrIV:12268715-12268795 2.29e-01 80 chrII:2991856-2991936 4.73e-01 80 chrV:14425267-14425347 6.15e-01 80 chrIII:12218978-12219058 4.57e-01 80 chrV:5917845-5917925 7.72e-06 27_[+5(2.47e-05)]_34_[+2(6.71e-05)]_\ 3 chrI:10642454-10642534 4.90e-01 80 chrII:9591249-9591329 6.87e-05 28_[+2(6.71e-05)]_9_[+3(1.39e-05)]_\ 27 chrI:4247555-4247635 1.17e-07 41_[+2(1.05e-05)]_2_[+1(4.40e-06)]_\ [+3(1.39e-05)]_13 chrI:5165021-5165101 2.76e-02 9_[+1(5.73e-05)]_63 chrV:11124099-11124179 4.11e-03 45_[+2(1.84e-05)]_27 chrV:1875722-1875802 1.15e-01 80 chrII:8516912-8516992 8.62e-01 80 chrIII:3322694-3322774 4.85e-01 80 chrII:6061653-6061733 4.98e-04 20_[+5(2.47e-05)]_52 chrI:10807446-10807526 6.38e-01 80 chrI:1175803-1175883 2.63e-01 64_[+4(6.98e-05)]_8 chrV:2127164-2127244 5.03e-05 58_[+3(3.83e-05)]_1_[+1(3.58e-05)]_\ 5 chrIII:11142229-11142309 1.56e-03 14_[+4(1.90e-05)]_58 chrV:16401680-16401760 4.14e-06 29_[+1(1.03e-05)]_21_[+3(2.44e-05)]_\ 3_[+5(2.47e-05)]_3 chrIII:6013150-6013230 7.17e-01 80 chrII:8325343-8325423 4.25e-02 80 chrV:13409218-13409298 1.15e-05 29_[+5(2.47e-05)]_2_[+1(1.62e-05)]_\ 33 chrV:18710198-18710278 3.62e-01 80 chrIII:4930442-4930522 3.18e-03 35_[+1(2.99e-05)]_37 chrV:10178274-10178354 7.76e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************