******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/zip-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:18901650-18901730 1.0000 80 chrV:20522367-20522447 1.0000 80 chrIII:10202541-10202621 1.0000 80 chrX:16147349-16147429 1.0000 80 chrV:16120645-16120725 1.0000 80 chrI:6460325-6460405 1.0000 80 chrV:16395329-16395409 1.0000 80 chrV:4042019-4042099 1.0000 80 chrIII:5581188-5581268 1.0000 80 chrII:1501786-1501866 1.0000 80 chrII:2289614-2289694 1.0000 80 chrI:11964860-11964940 1.0000 80 chrIII:3657653-3657733 1.0000 80 chrI:13391250-13391330 1.0000 80 chrIII:1284741-1284821 1.0000 80 chrI:12966564-12966644 1.0000 80 chrV:12261532-12261612 1.0000 80 chrI:14491003-14491083 1.0000 80 chrIII:10747762-10747842 1.0000 80 chrI:7476700-7476780 1.0000 80 chrIV:6622309-6622389 1.0000 80 chrII:11578456-11578536 1.0000 80 chrV:16160230-16160310 1.0000 80 chrIII:4204187-4204267 1.0000 80 chrV:5081098-5081178 1.0000 80 chrV:10938842-10938922 1.0000 80 chrX:1528279-1528359 1.0000 80 chrI:3785916-3785996 1.0000 80 chrIV:14532503-14532583 1.0000 80 chrV:4042220-4042300 1.0000 80 chrIII:5163095-5163175 1.0000 80 chrV:4844759-4844839 1.0000 80 chrX:4214855-4214935 1.0000 80 chrX:16814015-16814095 1.0000 80 chrIII:8490382-8490462 1.0000 80 chrX:573443-573523 1.0000 80 chrIII:8355221-8355301 1.0000 80 chrIV:4318224-4318304 1.0000 80 chrII:11649409-11649489 1.0000 80 chrV:1621667-1621747 1.0000 80 chrIV:12527445-12527525 1.0000 80 chrV:12697654-12697734 1.0000 80 chrX:4521964-4522044 1.0000 80 chrX:8069439-8069519 1.0000 80 chrX:11792116-11792196 1.0000 80 chrV:9333661-9333741 1.0000 80 chrII:1820028-1820108 1.0000 80 chrI:6092073-6092153 1.0000 80 chrII:1344611-1344691 1.0000 80 chrIV:16645654-16645734 1.0000 80 chrV:1472140-1472220 1.0000 80 chrI:2312189-2312269 1.0000 80 chrX:10576552-10576632 1.0000 80 chrX:8257894-8257974 1.0000 80 chrII:5966778-5966858 1.0000 80 chrII:4856240-4856320 1.0000 80 chrX:7791977-7792057 1.0000 80 chrI:12106430-12106510 1.0000 80 chrIV:3520539-3520619 1.0000 80 chrX:6836279-6836359 1.0000 80 chrX:7793575-7793655 1.0000 80 chrI:10728805-10728885 1.0000 80 chrII:2995018-2995098 1.0000 80 chrX:10386131-10386211 1.0000 80 chrIV:11006550-11006630 1.0000 80 chrV:123585-123665 1.0000 80 chrV:4024985-4025065 1.0000 80 chrV:5131528-5131608 1.0000 80 chrII:8457586-8457666 1.0000 80 chrIII:13278243-13278323 1.0000 80 chrI:7159349-7159429 1.0000 80 chrIII:3637764-3637844 1.0000 80 chrIV:8785035-8785115 1.0000 80 chrX:8556721-8556801 1.0000 80 chrV:5087167-5087247 1.0000 80 chrIII:8529035-8529115 1.0000 80 chrII:4173978-4174058 1.0000 80 chrIV:4545582-4545662 1.0000 80 chrX:14476766-14476846 1.0000 80 chrX:10194831-10194911 1.0000 80 chrX:14478368-14478448 1.0000 80 chrI:13411580-13411660 1.0000 80 chrIV:7728515-7728595 1.0000 80 chrI:8905598-8905678 1.0000 80 chrII:15120138-15120218 1.0000 80 chrX:5847505-5847585 1.0000 80 chrV:6656836-6656916 1.0000 80 chrI:12426799-12426879 1.0000 80 chrIII:4018283-4018363 1.0000 80 chrV:2218934-2219014 1.0000 80 chrI:13626372-13626452 1.0000 80 chrIII:9956819-9956899 1.0000 80 chrV:11585374-11585454 1.0000 80 chrV:12100958-12101038 1.0000 80 chrV:5233943-5234023 1.0000 80 chrII:6782816-6782896 1.0000 80 chrV:3803494-3803574 1.0000 80 chrII:9281823-9281903 1.0000 80 chrII:12042734-12042814 1.0000 80 chrIV:7149158-7149238 1.0000 80 chrV:13551748-13551828 1.0000 80 chrI:3266063-3266143 1.0000 80 chrII:950599-950679 1.0000 80 chrIII:5925843-5925923 1.0000 80 chrI:9862760-9862840 1.0000 80 chrV:8130208-8130288 1.0000 80 chrI:13559914-13559994 1.0000 80 chrV:13463109-13463189 1.0000 80 chrII:3684656-3684736 1.0000 80 chrIV:5656298-5656378 1.0000 80 chrV:15880879-15880959 1.0000 80 chrX:621543-621623 1.0000 80 chrI:12040237-12040317 1.0000 80 chrX:14557436-14557516 1.0000 80 chrIV:6555830-6555910 1.0000 80 chrIV:7391678-7391758 1.0000 80 chrII:9117950-9118030 1.0000 80 chrIII:5939473-5939553 1.0000 80 chrIV:6785974-6786054 1.0000 80 chrV:18787567-18787647 1.0000 80 chrI:12532221-12532301 1.0000 80 chrII:6889555-6889635 1.0000 80 chrX:4662472-4662552 1.0000 80 chrV:13661103-13661183 1.0000 80 chrI:3267722-3267802 1.0000 80 chrX:2083344-2083424 1.0000 80 chrI:9788004-9788084 1.0000 80 chrV:13909657-13909737 1.0000 80 chrII:7392270-7392350 1.0000 80 chrX:14819667-14819747 1.0000 80 chrIII:13716471-13716551 1.0000 80 chrX:10419914-10419994 1.0000 80 chrX:15339808-15339888 1.0000 80 chrIII:13456022-13456102 1.0000 80 chrII:31705-31785 1.0000 80 chrIII:5785692-5785772 1.0000 80 chrV:7955315-7955395 1.0000 80 chrII:7887461-7887541 1.0000 80 chrV:8288561-8288641 1.0000 80 chrI:12920709-12920789 1.0000 80 chrV:6214110-6214190 1.0000 80 chrV:20711925-20712005 1.0000 80 chrII:9497476-9497556 1.0000 80 chrX:1086658-1086738 1.0000 80 chrIII:4035127-4035207 1.0000 80 chrI:13423361-13423441 1.0000 80 chrIII:1279337-1279417 1.0000 80 chrIII:4242608-4242688 1.0000 80 chrIV:9321253-9321333 1.0000 80 chrX:16930877-16930957 1.0000 80 chrIII:5940883-5940963 1.0000 80 chrIV:6442357-6442437 1.0000 80 chrIII:9490956-9491036 1.0000 80 chrX:15610652-15610732 1.0000 80 chrX:5517894-5517974 1.0000 80 chrIV:3726016-3726096 1.0000 80 chrII:15173343-15173423 1.0000 80 chrIII:10807037-10807117 1.0000 80 chrIII:10357926-10358006 1.0000 80 chrIV:1953302-1953382 1.0000 80 chrX:8236197-8236277 1.0000 80 chrV:2057488-2057568 1.0000 80 chrX:13957212-13957292 1.0000 80 chrII:11495516-11495596 1.0000 80 chrIV:16415753-16415833 1.0000 80 chrIII:8772661-8772741 1.0000 80 chrIII:4503479-4503559 1.0000 80 chrII:3553652-3553732 1.0000 80 chrX:8286343-8286423 1.0000 80 chrV:727774-727854 1.0000 80 chrIV:10933161-10933241 1.0000 80 chrII:8216769-8216849 1.0000 80 chrII:8675462-8675542 1.0000 80 chrII:10950375-10950455 1.0000 80 chrV:16132393-16132473 1.0000 80 chrIII:4151802-4151882 1.0000 80 chrX:15279379-15279459 1.0000 80 chrIII:8868495-8868575 1.0000 80 chrX:4619733-4619813 1.0000 80 chrX:11604134-11604214 1.0000 80 chrV:5234145-5234225 1.0000 80 chrV:12318009-12318089 1.0000 80 chrI:8027883-8027963 1.0000 80 chrX:13687317-13687397 1.0000 80 chrX:3022491-3022571 1.0000 80 chrIV:4317833-4317913 1.0000 80 chrII:5320401-5320481 1.0000 80 chrIII:11101235-11101315 1.0000 80 chrV:7735131-7735211 1.0000 80 chrIII:7724620-7724700 1.0000 80 chrIV:3515566-3515646 1.0000 80 chrV:5576129-5576209 1.0000 80 chrIII:10814729-10814809 1.0000 80 chrI:1719428-1719508 1.0000 80 chrX:15568179-15568259 1.0000 80 chrII:5321788-5321868 1.0000 80 chrII:7346126-7346206 1.0000 80 chrIV:658110-658190 1.0000 80 chrII:10445896-10445976 1.0000 80 chrII:12768386-12768466 1.0000 80 chrII:98144-98224 1.0000 80 chrI:3032868-3032948 1.0000 80 chrX:10678156-10678236 1.0000 80 chrX:2071540-2071620 1.0000 80 chrII:10546780-10546860 1.0000 80 chrIV:14070770-14070850 1.0000 80 chrIII:4191387-4191467 1.0000 80 chrIV:5665475-5665555 1.0000 80 chrV:19421319-19421399 1.0000 80 chrIII:3703508-3703588 1.0000 80 chrIII:783360-783440 1.0000 80 chrV:10273714-10273794 1.0000 80 chrX:1479241-1479321 1.0000 80 chrX:4146857-4146937 1.0000 80 chrIV:4360676-4360756 1.0000 80 chrV:19429807-19429887 1.0000 80 chrIII:1533292-1533372 1.0000 80 chrIII:9805018-9805098 1.0000 80 chrV:13088321-13088401 1.0000 80 chrII:5886149-5886229 1.0000 80 chrIII:1674996-1675076 1.0000 80 chrI:9383840-9383920 1.0000 80 chrV:9545609-9545689 1.0000 80 chrIII:10507009-10507089 1.0000 80 chrIV:4880863-4880943 1.0000 80 chrX:6449213-6449293 1.0000 80 chrI:7861848-7861928 1.0000 80 chrIII:7142228-7142308 1.0000 80 chrV:14415298-14415378 1.0000 80 chrX:15045598-15045678 1.0000 80 chrV:10940893-10940973 1.0000 80 chrIII:11112867-11112947 1.0000 80 chrII:14291034-14291114 1.0000 80 chrII:8091703-8091783 1.0000 80 chrII:5335581-5335661 1.0000 80 chrII:6347855-6347935 1.0000 80 chrX:4137635-4137715 1.0000 80 chrII:12679785-12679865 1.0000 80 chrII:4999314-4999394 1.0000 80 chrI:2668792-2668872 1.0000 80 chrIII:348144-348224 1.0000 80 chrX:4145597-4145677 1.0000 80 chrX:15860812-15860892 1.0000 80 chrI:12576420-12576500 1.0000 80 chrIII:2376049-2376129 1.0000 80 chrII:14488800-14488880 1.0000 80 chrII:506153-506233 1.0000 80 chrX:12207330-12207410 1.0000 80 chrIV:4930827-4930907 1.0000 80 chrX:1452652-1452732 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_zip-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/zip-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.313 C 0.194 G 0.194 T 0.299 Background letter frequencies (from file dataset with add-one prior applied): A 0.313 C 0.194 G 0.194 T 0.299 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATTKCGMA MEME-1 width = 8 sites = 181 llr = 1529 E-value = 1.7e-239 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTKCGMA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8:::::5a pos.-specific C ::::a:4: probability G 1::4:a:: matrix T :aa5:::: bits 2.4 * 2.1 ** 1.9 ** 1.7 ** ** * Relative 1.4 ** ** * Entropy 1.2 ** ** * (12.2 bits) 0.9 *** ** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTTCGAA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTKCGMA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10940893-10940973 31 1.24e-05 ATTGCGAAAT ATTGCGCA CTCGGATTCT chrX:4137635-4137715 16 5.15e-05 ATCACGCGTG ATTGCGAA ATAATGGAAA chrII:5886149-5886229 7 5.15e-05 CTTGTG ATTTCGCA ATTCTTTCAT chrIII:783360-783440 17 5.15e-05 CACATTAAAA ATTTCGCA ATTTCCGTGA chrIII:3703508-3703588 58 5.15e-05 ATGCATGCGC ATTTCGCA AGACTTCCAT chrV:19421319-19421399 21 5.15e-05 TGAAAAAACT ATTTCGCA ATAAGATGAC chrIV:5665475-5665555 66 5.15e-05 AATGATGACT ATTGCGAA AGCGCGC chrII:5321788-5321868 22 5.15e-05 GACCACATGC ATTGCGAA ATCCACAGTG chrI:1719428-1719508 32 5.15e-05 TGTTTGGAAT ATTTCGCA ATATATTTTC chrIII:7724620-7724700 24 5.15e-05 ATCAAAGATT ATTGCGAA ACACATTTCT chrV:7735131-7735211 26 5.15e-05 TGAAAATTAA ATTTCGCA ACAGAGCTTC chrIV:4317833-4317913 46 5.15e-05 AAAATCGATA ATTTCGCA ATATTTTGAA chrX:3022491-3022571 2 5.15e-05 C ATTTCGCA ATAGCGTACG chrX:13687317-13687397 21 5.15e-05 GCGTTTCTCG ATTTCGCA ACACCCGTTG chrX:15279379-15279459 39 5.15e-05 CGCCGCTCTC ATTTCGCA ATCGTTCAAT chrIII:4151802-4151882 9 5.15e-05 CCTGTCGT ATTTCGCA ATCTTATCTC chrV:16132393-16132473 38 5.15e-05 ATTTCGAAAC ATTGCGAA ATATTTATTT chrX:8286343-8286423 32 5.15e-05 AATTCAAACT ATTGCGAA ATATCAAAAA chrX:13957212-13957292 67 5.15e-05 CTCCAACTAG ATTTCGCA ATTTTT chrV:2057488-2057568 23 5.15e-05 ACGTTTCCAA ATTGCGAA ATTTAGGCTC chrX:8236197-8236277 27 5.15e-05 ATCTTTTACA ATTTCGCA ATTGTTTATA chrIII:10807037-10807117 31 5.15e-05 ACTATTCCCG ATTGCGAA ACACGAGCTC chrII:15173343-15173423 41 5.15e-05 GGTTCTAATT ATTTCGCA ACGAGCCTCG chrX:15610652-15610732 50 5.15e-05 AGAAAGTTCG ATTTCGCA ACAGACACGT chrIII:5940883-5940963 11 5.15e-05 TTTGGGTAAT ATTTCGCA ACTTTCTAGG chrX:16930877-16930957 68 5.15e-05 ACGACGCGCT ATTGCGAA ATCAG chrIV:9321253-9321333 28 5.15e-05 TACGCAACTA ATTTCGCA ACACGCACTA chrIII:4242608-4242688 47 5.15e-05 TTTTCGCAAT ATTTCGCA ATAATTGTTC chrIII:4035127-4035207 29 5.15e-05 ACATTTCGAA ATTTCGCA ATAATTTCCC chrX:1086658-1086738 39 5.15e-05 GTCACAAAGT ATTGCGAA ATGTACCATA chrII:9497476-9497556 57 5.15e-05 TACAATGGGT ATTGCGAA ATAGATTGAA chrV:20711925-20712005 56 5.15e-05 ctctcCCCTC ATTTCGCA ATTTATGCAT chrV:6214110-6214190 24 5.15e-05 TAGAGCCCCT ATTTCGCA ATTTCGATTT chrI:12920709-12920789 26 5.15e-05 TCAGCGCTCA ATTTCGCA ATTTTCAAAG chrV:8288561-8288641 17 5.15e-05 ATGAACTCCG ATTGCGAA ATGTTTCACG chrII:7887461-7887541 16 5.15e-05 TCTCTCTCAC ATTTCGCA ATTCTCTCTA chrIII:5785692-5785772 24 5.15e-05 TTCGAAAACG ATTTCGCA ATAATTGCAA chrX:15339808-15339888 50 5.15e-05 ATAAACATGT ATTGCGAA ATCTTAAGAA chrIII:13716471-13716551 50 5.15e-05 AAAGACATTT ATTGCGAA ATATGATGAC chrII:7392270-7392350 43 5.15e-05 GTTTCATTAC ATTTCGCA ATCTTTTGCA chrV:13909657-13909737 45 5.15e-05 AACCTTGAGG ATTTCGCA ATATTTTCCA chrX:2083344-2083424 45 5.15e-05 ACGTGCTAGT ATTGCGAA ATATGGAGTG chrV:13661103-13661183 37 5.15e-05 TTAACTCCCG ATTGCGAA ATCTCTCACT chrI:12532221-12532301 11 5.15e-05 TTATCGCTAA ATTGCGAA ATTTTGCAGG chrV:18787567-18787647 37 5.15e-05 CCTCCAAACT ATTGCGAA ATCCTCCACA chrIV:6785974-6786054 32 5.15e-05 TTCCCTAACT ATTGCGAA ATTCTCTTTC chrIII:5939473-5939553 22 5.15e-05 TTTGTTATTG ATTTCGCA ATACTTTCGA chrIV:7391678-7391758 45 5.15e-05 GGGCCGAATG ATTGCGAA AGAGAAAGAG chrIV:6555830-6555910 30 5.15e-05 AAATGACACA ATTTCGCA ACAAATTCCA chrX:14557436-14557516 42 5.15e-05 CTAACCGACC ATTGCGAA ATCTGCGCAA chrIV:5656298-5656378 40 5.15e-05 GATGCAAAAG ATTTCGCA ATACTTTTCA chrII:3684656-3684736 31 5.15e-05 ATTTTTTCAT ATTGCGAA ATACCTCCTT chrIII:5925843-5925923 41 5.15e-05 CGTGGAATTG ATTGCGAA ACAAGTAAAT chrII:950599-950679 5 5.15e-05 TGCT ATTGCGAA ATTTCTATAA chrV:13551748-13551828 27 5.15e-05 TCACGAGAAA ATTGCGAA ATTAGCCAAA chrII:9281823-9281903 37 5.15e-05 AGAAAAGATG ATTGCGAA ATGTTTTCCC chrII:6782816-6782896 29 5.15e-05 CAAAAAAATA ATTGCGAA ATCTATCACG chrV:5233943-5234023 21 5.15e-05 TAAAGATCAG ATTTCGCA ATAGGAAGTT chrV:12100958-12101038 58 5.15e-05 GCTCGGTATT ATTTCGCA ATTTTTCCAA chrIII:9956819-9956899 33 5.15e-05 TGCAACCCGA ATTGCGAA ATCGAGAGGG chrV:2218934-2219014 25 5.15e-05 TTATTTCCAT ATTTCGCA ATACAACTTT chrIII:4018283-4018363 69 5.15e-05 AGGCAAATCT ATTGCGAA ACAT chrI:12426799-12426879 32 5.15e-05 GTTGAGCAAA ATTGCGAA ATAATTCATT chrX:5847505-5847585 41 5.15e-05 TTCCGGCTTT ATTTCGCA ACACCACTTC chrII:15120138-15120218 53 5.15e-05 CTCTGCGTAC ATTTCGCA ACTCTCATTT chrIV:7728515-7728595 27 5.15e-05 CGCGCGCTCT ATTGCGAA ACATTTTCCT chrIV:4545582-4545662 27 5.15e-05 GGTGAGCAGT ATTTCGCA ATACTTTTGA chrII:4173978-4174058 32 5.15e-05 AAAAAATTGC ATTTCGCA ATAACCACTA chrIII:8529035-8529115 26 5.15e-05 ATTTTCAAGT ATTGCGAA ATCATCTTTT chrV:5087167-5087247 62 5.15e-05 GTTGGAGAGA ATTTCGCA ATAGACCAAA chrX:8556721-8556801 10 5.15e-05 TTGTGCGGT ATTGCGAA ATCTGCATAT chrIV:8785035-8785115 4 5.15e-05 CGT ATTGCGAA ATCTTTTTTG chrIII:3637764-3637844 39 5.15e-05 TTGAAAAAGT ATTGCGAA ATCTTAAAAA chrIII:13278243-13278323 68 5.15e-05 TCCCCCCCAT ATTTCGCA ATCTT chrV:5131528-5131608 52 5.15e-05 GTGTCAGCAA ATTGCGAA ATCTTTTTTC chrIV:11006550-11006630 26 5.15e-05 TTCTAGGTAG ATTGCGAA ATACCCAAAG chrX:10386131-10386211 50 5.15e-05 TGAGCGGATT ATTGCGAA ATAATTCGTC chrII:2995018-2995098 47 5.15e-05 GTTTCGAAAA ATTTCGCA ACATTTTTCA chrI:10728805-10728885 32 5.15e-05 CCTGGCCGCG ATTGCGAA ATATTTTGCA chrIV:3520539-3520619 24 5.15e-05 TCTCGAACCA ATTTCGCA ATTCTCCTAC chrX:7791977-7792057 48 5.15e-05 GTGTAGGGGT ATTGCGAA ATGCGCACAC chrII:4856240-4856320 29 5.15e-05 TACCTGAAAT ATTGCGAA ATATTAAAAA chrX:8257894-8257974 27 5.15e-05 AAAAACTATG ATTTCGCA ATACTTCATT chrX:10576552-10576632 30 5.15e-05 AAAAGGTTAT ATTTCGCA ATCCATATTT chrI:2312189-2312269 67 5.15e-05 CTATGTATGT ATTGCGAA ATCATT chrV:1472140-1472220 24 5.15e-05 TCCCATGGCT ATTGCGAA ATACTAGAAA chrIV:16645654-16645734 64 5.15e-05 TATTTCCGAT ATTGCGAA ATTATCGAT chrII:1344611-1344691 40 5.15e-05 TTTTCAAGAT ATTTCGCA ATACTAAAAA chrI:6092073-6092153 22 5.15e-05 ATCAATAATT ATTTCGCA ATAAAATAGG chrII:1820028-1820108 23 5.15e-05 AGGTTTTAAA ATTTCGCA ATATGGCGCC chrV:9333661-9333741 58 5.15e-05 TTCTTTGGGT ATTGCGAA ATTTTTAAGT chrX:11792116-11792196 33 5.15e-05 AAATGACAAA ATTGCGAA ATCGGGCTAC chrX:8069439-8069519 39 5.15e-05 AACCCGGGAA ATTTCGCA ATACTTTCTG chrV:12697654-12697734 59 5.15e-05 TCTCGTAATC ATTGCGAA ATAGTGCCTT chrIV:12527445-12527525 39 5.15e-05 GGGTGACGGG ATTGCGAA ATCAAAGTGT chrV:1621667-1621747 39 5.15e-05 TACGAGATTT ATTGCGAA ATAGGTTACT chrII:11649409-11649489 58 5.15e-05 AACATCATGT ATTGCGAA ATAGTCAAAA chrIV:4318224-4318304 66 5.15e-05 AAAAATGATT ATTTCGCA ATACAGC chrIII:8355221-8355301 43 5.15e-05 ACGGCAAAAC ATTGCGAA ATTTCGGAAT chrX:573443-573523 39 5.15e-05 GAGATTTGAG ATTTCGCA ATGTGCTGAT chrIII:8490382-8490462 41 5.15e-05 AATAAAAGAA ATTGCGAA ATTTTATAAA chrX:4214855-4214935 25 5.15e-05 TGTAGGGGCG ATTTCGCA ACAATCGTTC chrV:4844759-4844839 26 5.15e-05 CAAACACTAG ATTTCGCA ATGCAGTCAC chrIII:5163095-5163175 50 5.15e-05 GGAAAAAAAC ATTGCGAA ATTCAACACA chrIV:14532503-14532583 26 5.15e-05 AGAGAAAGTT ATTGCGAA ATAGCTAACG chrI:3785916-3785996 49 5.15e-05 TATTTCGAGA ATTTCGCA ATACTCTTTT chrX:1528279-1528359 43 5.15e-05 TTCGGGGAGT ATTGCGAA ATAGGAGTGG chrV:10938842-10938922 42 5.15e-05 GTTGCGGAAT ATTTCGCA ATCGGTCAAG chrV:5081098-5081178 43 5.15e-05 GTTAGGAAAT ATTTCGCA ACAGTCAAAG chrIII:4204187-4204267 55 5.15e-05 TTAATAGAAA ATTGCGAA ATTTCAGATA chrV:16160230-16160310 24 5.15e-05 TTCAGAGACT ATTTCGCA ATATTTCAAA chrII:11578456-11578536 47 5.15e-05 CGCAAAGGCG ATTGCGAA ATCAAGTCAT chrI:7476700-7476780 6 5.15e-05 ACACT ATTTCGCA ATACTCAATA chrIII:10747762-10747842 54 5.15e-05 AATGCGAATT ATTGCGAA ATTCTACGTA chrV:12261532-12261612 50 5.15e-05 AATAGACTAT ATTTCGCA ATAGGGAATA chrI:12966564-12966644 4 5.15e-05 GGA ATTTCGCA ATTCCCAATG chrI:13391250-13391330 38 5.15e-05 TTCATCAGAA ATTTCGCA ATAGTAGGCG chrIII:3657653-3657733 41 5.15e-05 TTATTGAATT ATTGCGAA ATCGGCATTT chrI:11964860-11964940 14 5.15e-05 CGCCGCCGTG ATTGCGAA ATAGCATTCC chrII:2289614-2289694 60 5.15e-05 AAATAGTTTC ATTGCGAA ATTTGTTGAA chrII:1501786-1501866 3 5.15e-05 CG ATTTCGCA ATATCTAGGT chrIII:5581188-5581268 52 5.15e-05 TTACTAAAAT ATTGCGAA ATATTGCAAA chrV:4042019-4042099 30 5.15e-05 ATGGCGCAAT ATTTCGCA ATACATTTGG chrV:16395329-16395409 36 5.15e-05 ATTTCGCAAT ATTTCGCA ATTTTATTAA chrI:6460325-6460405 25 5.15e-05 GAGAAAGAGT ATTGCGAA ATCATCATCG chrV:16120645-16120725 39 5.15e-05 ATCATCTCAA ATTGCGAA ATATAAAAAA chrX:16147349-16147429 37 5.15e-05 TCTACCAACT ATTTCGCA ATACTGTTGT chrIII:10202541-10202621 40 5.15e-05 AAAATGTGCG ATTTCGCA ATACCCATCA chrV:20522367-20522447 34 5.15e-05 CATTTGCATT ATTTCGCA ATATGTTTTC chrV:18901650-18901730 37 5.15e-05 AAAAATCAAT ATTTCGCA ATAAATTCTC chrII:98144-98224 52 8.24e-05 AGAATTTTCT ATTTCGAA TCATTTTTCA chrII:31705-31785 52 8.24e-05 TATTTTTTCG ATTTCGAA ATCGATTTCA chrV:123585-123665 48 8.24e-05 ATCGAAAAAT ATTTCGAA ATTTTACGCA chrX:6836279-6836359 56 8.24e-05 ACACAAAAAC ATTTCGAA ATCATACGAG chrX:14476766-14476846 25 9.01e-05 AGAACCAGAG GTTGCGCA ATTGCACGAA chrIII:9805018-9805098 65 1.14e-04 GTTGTGGAAT GTTTCGCA ATGCAATC chrIV:3515566-3515646 27 1.14e-04 CCCGGTGTGT GTTGCGAA ATAAACAAAT chrI:8027883-8027963 69 1.14e-04 GACAAAATGG GTTGCGAA ATGC chrIII:8868495-8868575 47 1.14e-04 GAGGCGTAAT GTTGCGAA ATTAATATTT chrII:8216769-8216849 14 1.14e-04 TTGATTTCCG GTTGCGAA ATTGGTTAAG chrIV:10933161-10933241 28 1.14e-04 TCGATAAACT GTTGCGAA ATAAATTGAG chrIII:9490956-9491036 19 1.14e-04 ATATTGCTTA GTTGCGAA ATATTTCAAA chrV:7955315-7955395 19 1.14e-04 AACGTGTGAA GTTGCGAA ATACGAATAC chrII:9117950-9118030 21 1.14e-04 TCAATTTTCG GTTTCGCA TTGATAATTT chrI:3266063-3266143 43 1.14e-04 GTGCTGACGC GTTTCGCA CCGAATTTTC chrIV:7149158-7149238 37 1.14e-04 AAAAAGGATT GTTGCGAA ATTCAACTAA chrV:3803494-3803574 72 1.14e-04 ACGAAAATAT GTTGCGAA A chrV:6656836-6656916 14 1.14e-04 AATGAGAGAT GTTGCGAA ATCTGTGCAA chrI:8905598-8905678 37 1.14e-04 TTTTGCAATT GTTTCGCA ATGACCCAAG chrI:7159349-7159429 45 1.14e-04 GGACAACATT GTTTCGCA ACACTTTTTT chrII:8457586-8457666 30 1.14e-04 TTTTTGACGG GTTGCGAA ATCGGTCGAA chrX:7793575-7793655 70 1.14e-04 TGTTTAAAAA GTTTCGCA AAA chrI:9383840-9383920 38 1.53e-04 CCTCTTACAT ATTACGCA ATCGACCAGC chrI:12576420-12576500 41 2.13e-04 ACACATTGGA ATTACGAA ATCGGAGCGT chrI:7861848-7861928 57 2.13e-04 AAATCGCCAA ATTACGAA ATACTTCTCA chrV:5234145-5234225 41 2.13e-04 AGAATAGAAA ATTACGAA ATATCAGAAT chrV:8130208-8130288 48 2.13e-04 AAACTCCTGA ATTACGAA ATACATTTAT chrV:4024985-4025065 51 2.13e-04 AAAAAAAAGT ATTACGAA ATATTTCGCC chrI:12106430-12106510 64 2.13e-04 ATACGTTGTT ATTACGAA ATATCCGAA chrIII:1279337-1279417 72 2.42e-04 AGCAATGCTC ATTTCGTA A chrIII:13456022-13456102 20 2.42e-04 CAATTGAACT ATTTCGTA ATATTTTCAT chrI:9862760-9862840 8 2.42e-04 GTGAAAT ATTTCGTA ATATTTTATC chrII:12042734-12042814 61 2.42e-04 CAAATAGATA ATTTCGTA ATAGTGATGT chrIV:6622309-6622389 39 2.42e-04 ACCGTTCCCT ATTTCGTA ATCTTTTTCT chrIII:1284741-1284821 25 2.42e-04 TAAAATGCCT ATTTCGTA ACATTGCATA chrV:13463109-13463189 54 2.66e-04 CGGCGTCCCT CTTTCGCA ATACCAACAC chrX:10678156-10678236 33 2.85e-04 ACGAAATCGA CTTTCGAA ACGTCACTTT chrV:5576129-5576209 27 2.85e-04 GTTGTCATTT CTTTCGAA ACGTCGGTCG chrII:8675462-8675542 48 2.85e-04 CCTAATTCTA CTTTCGAA TTCAGAATTT chrIII:10357926-10358006 62 3.42e-04 CGCAGAGAAA GTTGCGTA ACATTTGGTG chrX:4521964-4522044 19 3.42e-04 GTCACATGTT ATTGCACA AACACGAGCA chrV:15880879-15880959 47 3.99e-04 ATTGTAAAAT GTTACGAA ATCGTTCTAT chrII:5966778-5966858 41 3.99e-04 GCAGACAAGA GTTACGAA ATATTGGGGA chrX:15568179-15568259 11 4.80e-04 CCACACCACT ATTTCACA ACATTTACAA chrI:12040237-12040317 45 4.80e-04 CTTGTACAAA ATTTCACA ATATTTCACC chrX:1479241-1479321 20 5.10e-04 GAGACATTCG TTTTCGAA CACTTTGTGT chrIV:3726016-3726096 73 5.10e-04 CTCGGCGCAT TTTTCGAA chrI:13423361-13423441 34 5.10e-04 AACATTTTTT TTTTCGAA ACACTTTTTT chrX:16814015-16814095 10 5.60e-04 TTCGCAATA ATTTCAAA ACATCGAACA chrIV:4360676-4360756 64 6.86e-04 TTTTTTTGTT GTTGCAAA ATCTGAAAT chrI:13626372-13626452 21 7.05e-04 TTTGCGTACT CTTTCGTA ATAGCTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTKCGMA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10940893-10940973 1.2e-05 30_[+1]_42 chrX:4137635-4137715 5.2e-05 15_[+1]_57 chrII:5886149-5886229 5.2e-05 6_[+1]_66 chrIII:783360-783440 5.2e-05 16_[+1]_56 chrIII:3703508-3703588 5.2e-05 57_[+1]_15 chrV:19421319-19421399 5.2e-05 20_[+1]_52 chrIV:5665475-5665555 5.2e-05 65_[+1]_7 chrII:5321788-5321868 5.2e-05 21_[+1]_51 chrI:1719428-1719508 5.2e-05 31_[+1]_41 chrIII:7724620-7724700 5.2e-05 23_[+1]_49 chrV:7735131-7735211 5.2e-05 25_[+1]_47 chrIV:4317833-4317913 5.2e-05 45_[+1]_27 chrX:3022491-3022571 5.2e-05 1_[+1]_71 chrX:13687317-13687397 5.2e-05 20_[+1]_52 chrX:15279379-15279459 5.2e-05 38_[+1]_34 chrIII:4151802-4151882 5.2e-05 8_[+1]_64 chrV:16132393-16132473 5.2e-05 37_[+1]_35 chrX:8286343-8286423 5.2e-05 31_[+1]_41 chrX:13957212-13957292 5.2e-05 66_[+1]_6 chrV:2057488-2057568 5.2e-05 22_[+1]_50 chrX:8236197-8236277 5.2e-05 26_[+1]_46 chrIII:10807037-10807117 5.2e-05 30_[+1]_42 chrII:15173343-15173423 5.2e-05 40_[+1]_32 chrX:15610652-15610732 5.2e-05 49_[+1]_23 chrIII:5940883-5940963 5.2e-05 10_[+1]_62 chrX:16930877-16930957 5.2e-05 67_[+1]_5 chrIV:9321253-9321333 5.2e-05 27_[+1]_45 chrIII:4242608-4242688 5.2e-05 46_[+1]_26 chrIII:4035127-4035207 5.2e-05 28_[+1]_44 chrX:1086658-1086738 5.2e-05 38_[+1]_34 chrII:9497476-9497556 5.2e-05 56_[+1]_16 chrV:20711925-20712005 5.2e-05 55_[+1]_17 chrV:6214110-6214190 5.2e-05 23_[+1]_49 chrI:12920709-12920789 5.2e-05 25_[+1]_47 chrV:8288561-8288641 5.2e-05 16_[+1]_56 chrII:7887461-7887541 5.2e-05 15_[+1]_57 chrIII:5785692-5785772 5.2e-05 23_[+1]_49 chrX:15339808-15339888 5.2e-05 49_[+1]_23 chrIII:13716471-13716551 5.2e-05 49_[+1]_23 chrII:7392270-7392350 5.2e-05 42_[+1]_30 chrV:13909657-13909737 5.2e-05 44_[+1]_28 chrX:2083344-2083424 5.2e-05 44_[+1]_28 chrV:13661103-13661183 5.2e-05 36_[+1]_36 chrI:12532221-12532301 5.2e-05 10_[+1]_62 chrV:18787567-18787647 5.2e-05 36_[+1]_36 chrIV:6785974-6786054 5.2e-05 31_[+1]_41 chrIII:5939473-5939553 5.2e-05 21_[+1]_51 chrIV:7391678-7391758 5.2e-05 44_[+1]_28 chrIV:6555830-6555910 5.2e-05 29_[+1]_43 chrX:14557436-14557516 5.2e-05 41_[+1]_31 chrIV:5656298-5656378 5.2e-05 39_[+1]_33 chrII:3684656-3684736 5.2e-05 30_[+1]_42 chrIII:5925843-5925923 5.2e-05 40_[+1]_32 chrII:950599-950679 5.2e-05 4_[+1]_68 chrV:13551748-13551828 5.2e-05 26_[+1]_46 chrII:9281823-9281903 5.2e-05 36_[+1]_36 chrII:6782816-6782896 5.2e-05 28_[+1]_44 chrV:5233943-5234023 5.2e-05 20_[+1]_52 chrV:12100958-12101038 5.2e-05 57_[+1]_15 chrIII:9956819-9956899 5.2e-05 32_[+1]_40 chrV:2218934-2219014 5.2e-05 24_[+1]_48 chrIII:4018283-4018363 5.2e-05 68_[+1]_4 chrI:12426799-12426879 5.2e-05 31_[+1]_41 chrX:5847505-5847585 5.2e-05 40_[+1]_32 chrII:15120138-15120218 5.2e-05 52_[+1]_20 chrIV:7728515-7728595 5.2e-05 26_[+1]_46 chrIV:4545582-4545662 5.2e-05 26_[+1]_46 chrII:4173978-4174058 5.2e-05 31_[+1]_41 chrIII:8529035-8529115 5.2e-05 25_[+1]_47 chrV:5087167-5087247 5.2e-05 61_[+1]_11 chrX:8556721-8556801 5.2e-05 9_[+1]_63 chrIV:8785035-8785115 5.2e-05 3_[+1]_69 chrIII:3637764-3637844 5.2e-05 38_[+1]_34 chrIII:13278243-13278323 5.2e-05 67_[+1]_5 chrV:5131528-5131608 5.2e-05 51_[+1]_21 chrIV:11006550-11006630 5.2e-05 25_[+1]_47 chrX:10386131-10386211 5.2e-05 49_[+1]_23 chrII:2995018-2995098 5.2e-05 46_[+1]_26 chrI:10728805-10728885 5.2e-05 31_[+1]_41 chrIV:3520539-3520619 5.2e-05 23_[+1]_49 chrX:7791977-7792057 5.2e-05 47_[+1]_25 chrII:4856240-4856320 5.2e-05 28_[+1]_44 chrX:8257894-8257974 5.2e-05 26_[+1]_46 chrX:10576552-10576632 5.2e-05 29_[+1]_43 chrI:2312189-2312269 5.2e-05 66_[+1]_6 chrV:1472140-1472220 5.2e-05 23_[+1]_49 chrIV:16645654-16645734 5.2e-05 63_[+1]_9 chrII:1344611-1344691 5.2e-05 39_[+1]_33 chrI:6092073-6092153 5.2e-05 21_[+1]_51 chrII:1820028-1820108 5.2e-05 22_[+1]_50 chrV:9333661-9333741 5.2e-05 57_[+1]_15 chrX:11792116-11792196 5.2e-05 32_[+1]_40 chrX:8069439-8069519 5.2e-05 38_[+1]_34 chrV:12697654-12697734 5.2e-05 58_[+1]_14 chrIV:12527445-12527525 5.2e-05 38_[+1]_34 chrV:1621667-1621747 5.2e-05 38_[+1]_34 chrII:11649409-11649489 5.2e-05 57_[+1]_15 chrIV:4318224-4318304 5.2e-05 65_[+1]_7 chrIII:8355221-8355301 5.2e-05 42_[+1]_30 chrX:573443-573523 5.2e-05 38_[+1]_34 chrIII:8490382-8490462 5.2e-05 40_[+1]_32 chrX:4214855-4214935 5.2e-05 24_[+1]_48 chrV:4844759-4844839 5.2e-05 25_[+1]_47 chrIII:5163095-5163175 5.2e-05 49_[+1]_23 chrIV:14532503-14532583 5.2e-05 25_[+1]_47 chrI:3785916-3785996 5.2e-05 48_[+1]_24 chrX:1528279-1528359 5.2e-05 42_[+1]_30 chrV:10938842-10938922 5.2e-05 41_[+1]_31 chrV:5081098-5081178 5.2e-05 42_[+1]_30 chrIII:4204187-4204267 5.2e-05 54_[+1]_18 chrV:16160230-16160310 5.2e-05 23_[+1]_49 chrII:11578456-11578536 5.2e-05 46_[+1]_26 chrI:7476700-7476780 5.2e-05 5_[+1]_67 chrIII:10747762-10747842 5.2e-05 53_[+1]_19 chrV:12261532-12261612 5.2e-05 49_[+1]_23 chrI:12966564-12966644 5.2e-05 3_[+1]_69 chrI:13391250-13391330 5.2e-05 37_[+1]_35 chrIII:3657653-3657733 5.2e-05 40_[+1]_32 chrI:11964860-11964940 5.2e-05 13_[+1]_59 chrII:2289614-2289694 5.2e-05 59_[+1]_13 chrII:1501786-1501866 5.2e-05 2_[+1]_70 chrIII:5581188-5581268 5.2e-05 51_[+1]_21 chrV:4042019-4042099 5.2e-05 29_[+1]_43 chrV:16395329-16395409 5.2e-05 35_[+1]_37 chrI:6460325-6460405 5.2e-05 24_[+1]_48 chrV:16120645-16120725 5.2e-05 38_[+1]_34 chrX:16147349-16147429 5.2e-05 36_[+1]_36 chrIII:10202541-10202621 5.2e-05 39_[+1]_33 chrV:20522367-20522447 5.2e-05 33_[+1]_39 chrV:18901650-18901730 5.2e-05 36_[+1]_36 chrII:98144-98224 8.2e-05 51_[+1]_21 chrII:31705-31785 8.2e-05 51_[+1]_21 chrV:123585-123665 8.2e-05 47_[+1]_25 chrX:6836279-6836359 8.2e-05 55_[+1]_17 chrX:14476766-14476846 9e-05 24_[+1]_48 chrIII:9805018-9805098 0.00011 64_[+1]_8 chrIV:3515566-3515646 0.00011 26_[+1]_46 chrI:8027883-8027963 0.00011 68_[+1]_4 chrIII:8868495-8868575 0.00011 46_[+1]_26 chrII:8216769-8216849 0.00011 13_[+1]_59 chrIV:10933161-10933241 0.00011 27_[+1]_45 chrIII:9490956-9491036 0.00011 18_[+1]_54 chrV:7955315-7955395 0.00011 18_[+1]_54 chrII:9117950-9118030 0.00011 20_[+1]_52 chrI:3266063-3266143 0.00011 42_[+1]_30 chrIV:7149158-7149238 0.00011 36_[+1]_36 chrV:3803494-3803574 0.00011 71_[+1]_1 chrV:6656836-6656916 0.00011 13_[+1]_59 chrI:8905598-8905678 0.00011 36_[+1]_36 chrI:7159349-7159429 0.00011 44_[+1]_28 chrII:8457586-8457666 0.00011 29_[+1]_43 chrX:7793575-7793655 0.00011 69_[+1]_3 chrI:9383840-9383920 0.00015 37_[+1]_35 chrI:12576420-12576500 0.00021 40_[+1]_32 chrI:7861848-7861928 0.00021 56_[+1]_16 chrV:5234145-5234225 0.00021 40_[+1]_32 chrV:8130208-8130288 0.00021 47_[+1]_25 chrV:4024985-4025065 0.00021 50_[+1]_22 chrI:12106430-12106510 0.00021 63_[+1]_9 chrIII:1279337-1279417 0.00024 71_[+1]_1 chrIII:13456022-13456102 0.00024 19_[+1]_53 chrI:9862760-9862840 0.00024 7_[+1]_65 chrII:12042734-12042814 0.00024 60_[+1]_12 chrIV:6622309-6622389 0.00024 38_[+1]_34 chrIII:1284741-1284821 0.00024 24_[+1]_48 chrV:13463109-13463189 0.00027 53_[+1]_19 chrX:10678156-10678236 0.00029 32_[+1]_40 chrV:5576129-5576209 0.00029 26_[+1]_46 chrII:8675462-8675542 0.00029 47_[+1]_25 chrIII:10357926-10358006 0.00034 61_[+1]_11 chrX:4521964-4522044 0.00034 18_[+1]_54 chrV:15880879-15880959 0.0004 46_[+1]_26 chrII:5966778-5966858 0.0004 40_[+1]_32 chrX:15568179-15568259 0.00048 10_[+1]_62 chrI:12040237-12040317 0.00048 44_[+1]_28 chrX:1479241-1479321 0.00051 19_[+1]_53 chrIV:3726016-3726096 0.00051 72_[+1] chrI:13423361-13423441 0.00051 33_[+1]_39 chrX:16814015-16814095 0.00056 9_[+1]_63 chrIV:4360676-4360756 0.00069 63_[+1]_9 chrI:13626372-13626452 0.0007 20_[+1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTKCGMA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTKCGMA width=8 seqs=181 chrV:10940893-10940973 ( 31) ATTGCGCA 1 chrX:4137635-4137715 ( 16) ATTGCGAA 1 chrII:5886149-5886229 ( 7) ATTTCGCA 1 chrIII:783360-783440 ( 17) ATTTCGCA 1 chrIII:3703508-3703588 ( 58) ATTTCGCA 1 chrV:19421319-19421399 ( 21) ATTTCGCA 1 chrIV:5665475-5665555 ( 66) ATTGCGAA 1 chrII:5321788-5321868 ( 22) ATTGCGAA 1 chrI:1719428-1719508 ( 32) ATTTCGCA 1 chrIII:7724620-7724700 ( 24) ATTGCGAA 1 chrV:7735131-7735211 ( 26) ATTTCGCA 1 chrIV:4317833-4317913 ( 46) ATTTCGCA 1 chrX:3022491-3022571 ( 2) ATTTCGCA 1 chrX:13687317-13687397 ( 21) ATTTCGCA 1 chrX:15279379-15279459 ( 39) ATTTCGCA 1 chrIII:4151802-4151882 ( 9) ATTTCGCA 1 chrV:16132393-16132473 ( 38) ATTGCGAA 1 chrX:8286343-8286423 ( 32) ATTGCGAA 1 chrX:13957212-13957292 ( 67) ATTTCGCA 1 chrV:2057488-2057568 ( 23) ATTGCGAA 1 chrX:8236197-8236277 ( 27) ATTTCGCA 1 chrIII:10807037-10807117 ( 31) ATTGCGAA 1 chrII:15173343-15173423 ( 41) ATTTCGCA 1 chrX:15610652-15610732 ( 50) ATTTCGCA 1 chrIII:5940883-5940963 ( 11) ATTTCGCA 1 chrX:16930877-16930957 ( 68) ATTGCGAA 1 chrIV:9321253-9321333 ( 28) ATTTCGCA 1 chrIII:4242608-4242688 ( 47) ATTTCGCA 1 chrIII:4035127-4035207 ( 29) ATTTCGCA 1 chrX:1086658-1086738 ( 39) ATTGCGAA 1 chrII:9497476-9497556 ( 57) ATTGCGAA 1 chrV:20711925-20712005 ( 56) ATTTCGCA 1 chrV:6214110-6214190 ( 24) ATTTCGCA 1 chrI:12920709-12920789 ( 26) ATTTCGCA 1 chrV:8288561-8288641 ( 17) ATTGCGAA 1 chrII:7887461-7887541 ( 16) ATTTCGCA 1 chrIII:5785692-5785772 ( 24) ATTTCGCA 1 chrX:15339808-15339888 ( 50) ATTGCGAA 1 chrIII:13716471-13716551 ( 50) ATTGCGAA 1 chrII:7392270-7392350 ( 43) ATTTCGCA 1 chrV:13909657-13909737 ( 45) ATTTCGCA 1 chrX:2083344-2083424 ( 45) ATTGCGAA 1 chrV:13661103-13661183 ( 37) ATTGCGAA 1 chrI:12532221-12532301 ( 11) ATTGCGAA 1 chrV:18787567-18787647 ( 37) ATTGCGAA 1 chrIV:6785974-6786054 ( 32) ATTGCGAA 1 chrIII:5939473-5939553 ( 22) ATTTCGCA 1 chrIV:7391678-7391758 ( 45) ATTGCGAA 1 chrIV:6555830-6555910 ( 30) ATTTCGCA 1 chrX:14557436-14557516 ( 42) ATTGCGAA 1 chrIV:5656298-5656378 ( 40) ATTTCGCA 1 chrII:3684656-3684736 ( 31) ATTGCGAA 1 chrIII:5925843-5925923 ( 41) ATTGCGAA 1 chrII:950599-950679 ( 5) ATTGCGAA 1 chrV:13551748-13551828 ( 27) ATTGCGAA 1 chrII:9281823-9281903 ( 37) ATTGCGAA 1 chrII:6782816-6782896 ( 29) ATTGCGAA 1 chrV:5233943-5234023 ( 21) ATTTCGCA 1 chrV:12100958-12101038 ( 58) ATTTCGCA 1 chrIII:9956819-9956899 ( 33) ATTGCGAA 1 chrV:2218934-2219014 ( 25) ATTTCGCA 1 chrIII:4018283-4018363 ( 69) ATTGCGAA 1 chrI:12426799-12426879 ( 32) ATTGCGAA 1 chrX:5847505-5847585 ( 41) ATTTCGCA 1 chrII:15120138-15120218 ( 53) ATTTCGCA 1 chrIV:7728515-7728595 ( 27) ATTGCGAA 1 chrIV:4545582-4545662 ( 27) ATTTCGCA 1 chrII:4173978-4174058 ( 32) ATTTCGCA 1 chrIII:8529035-8529115 ( 26) ATTGCGAA 1 chrV:5087167-5087247 ( 62) ATTTCGCA 1 chrX:8556721-8556801 ( 10) ATTGCGAA 1 chrIV:8785035-8785115 ( 4) ATTGCGAA 1 chrIII:3637764-3637844 ( 39) ATTGCGAA 1 chrIII:13278243-13278323 ( 68) ATTTCGCA 1 chrV:5131528-5131608 ( 52) ATTGCGAA 1 chrIV:11006550-11006630 ( 26) ATTGCGAA 1 chrX:10386131-10386211 ( 50) ATTGCGAA 1 chrII:2995018-2995098 ( 47) ATTTCGCA 1 chrI:10728805-10728885 ( 32) ATTGCGAA 1 chrIV:3520539-3520619 ( 24) ATTTCGCA 1 chrX:7791977-7792057 ( 48) ATTGCGAA 1 chrII:4856240-4856320 ( 29) ATTGCGAA 1 chrX:8257894-8257974 ( 27) ATTTCGCA 1 chrX:10576552-10576632 ( 30) ATTTCGCA 1 chrI:2312189-2312269 ( 67) ATTGCGAA 1 chrV:1472140-1472220 ( 24) ATTGCGAA 1 chrIV:16645654-16645734 ( 64) ATTGCGAA 1 chrII:1344611-1344691 ( 40) ATTTCGCA 1 chrI:6092073-6092153 ( 22) ATTTCGCA 1 chrII:1820028-1820108 ( 23) ATTTCGCA 1 chrV:9333661-9333741 ( 58) ATTGCGAA 1 chrX:11792116-11792196 ( 33) ATTGCGAA 1 chrX:8069439-8069519 ( 39) ATTTCGCA 1 chrV:12697654-12697734 ( 59) ATTGCGAA 1 chrIV:12527445-12527525 ( 39) ATTGCGAA 1 chrV:1621667-1621747 ( 39) ATTGCGAA 1 chrII:11649409-11649489 ( 58) ATTGCGAA 1 chrIV:4318224-4318304 ( 66) ATTTCGCA 1 chrIII:8355221-8355301 ( 43) ATTGCGAA 1 chrX:573443-573523 ( 39) ATTTCGCA 1 chrIII:8490382-8490462 ( 41) ATTGCGAA 1 chrX:4214855-4214935 ( 25) ATTTCGCA 1 chrV:4844759-4844839 ( 26) ATTTCGCA 1 chrIII:5163095-5163175 ( 50) ATTGCGAA 1 chrIV:14532503-14532583 ( 26) ATTGCGAA 1 chrI:3785916-3785996 ( 49) ATTTCGCA 1 chrX:1528279-1528359 ( 43) ATTGCGAA 1 chrV:10938842-10938922 ( 42) ATTTCGCA 1 chrV:5081098-5081178 ( 43) ATTTCGCA 1 chrIII:4204187-4204267 ( 55) ATTGCGAA 1 chrV:16160230-16160310 ( 24) ATTTCGCA 1 chrII:11578456-11578536 ( 47) ATTGCGAA 1 chrI:7476700-7476780 ( 6) ATTTCGCA 1 chrIII:10747762-10747842 ( 54) ATTGCGAA 1 chrV:12261532-12261612 ( 50) ATTTCGCA 1 chrI:12966564-12966644 ( 4) ATTTCGCA 1 chrI:13391250-13391330 ( 38) ATTTCGCA 1 chrIII:3657653-3657733 ( 41) ATTGCGAA 1 chrI:11964860-11964940 ( 14) ATTGCGAA 1 chrII:2289614-2289694 ( 60) ATTGCGAA 1 chrII:1501786-1501866 ( 3) ATTTCGCA 1 chrIII:5581188-5581268 ( 52) ATTGCGAA 1 chrV:4042019-4042099 ( 30) ATTTCGCA 1 chrV:16395329-16395409 ( 36) ATTTCGCA 1 chrI:6460325-6460405 ( 25) ATTGCGAA 1 chrV:16120645-16120725 ( 39) ATTGCGAA 1 chrX:16147349-16147429 ( 37) ATTTCGCA 1 chrIII:10202541-10202621 ( 40) ATTTCGCA 1 chrV:20522367-20522447 ( 34) ATTTCGCA 1 chrV:18901650-18901730 ( 37) ATTTCGCA 1 chrII:98144-98224 ( 52) ATTTCGAA 1 chrII:31705-31785 ( 52) ATTTCGAA 1 chrV:123585-123665 ( 48) ATTTCGAA 1 chrX:6836279-6836359 ( 56) ATTTCGAA 1 chrX:14476766-14476846 ( 25) GTTGCGCA 1 chrIII:9805018-9805098 ( 65) GTTTCGCA 1 chrIV:3515566-3515646 ( 27) GTTGCGAA 1 chrI:8027883-8027963 ( 69) GTTGCGAA 1 chrIII:8868495-8868575 ( 47) GTTGCGAA 1 chrII:8216769-8216849 ( 14) GTTGCGAA 1 chrIV:10933161-10933241 ( 28) GTTGCGAA 1 chrIII:9490956-9491036 ( 19) GTTGCGAA 1 chrV:7955315-7955395 ( 19) GTTGCGAA 1 chrII:9117950-9118030 ( 21) GTTTCGCA 1 chrI:3266063-3266143 ( 43) GTTTCGCA 1 chrIV:7149158-7149238 ( 37) GTTGCGAA 1 chrV:3803494-3803574 ( 72) GTTGCGAA 1 chrV:6656836-6656916 ( 14) GTTGCGAA 1 chrI:8905598-8905678 ( 37) GTTTCGCA 1 chrI:7159349-7159429 ( 45) GTTTCGCA 1 chrII:8457586-8457666 ( 30) GTTGCGAA 1 chrX:7793575-7793655 ( 70) GTTTCGCA 1 chrI:9383840-9383920 ( 38) ATTACGCA 1 chrI:12576420-12576500 ( 41) ATTACGAA 1 chrI:7861848-7861928 ( 57) ATTACGAA 1 chrV:5234145-5234225 ( 41) ATTACGAA 1 chrV:8130208-8130288 ( 48) ATTACGAA 1 chrV:4024985-4025065 ( 51) ATTACGAA 1 chrI:12106430-12106510 ( 64) ATTACGAA 1 chrIII:1279337-1279417 ( 72) ATTTCGTA 1 chrIII:13456022-13456102 ( 20) ATTTCGTA 1 chrI:9862760-9862840 ( 8) ATTTCGTA 1 chrII:12042734-12042814 ( 61) ATTTCGTA 1 chrIV:6622309-6622389 ( 39) ATTTCGTA 1 chrIII:1284741-1284821 ( 25) ATTTCGTA 1 chrV:13463109-13463189 ( 54) CTTTCGCA 1 chrX:10678156-10678236 ( 33) CTTTCGAA 1 chrV:5576129-5576209 ( 27) CTTTCGAA 1 chrII:8675462-8675542 ( 48) CTTTCGAA 1 chrIII:10357926-10358006 ( 62) GTTGCGTA 1 chrX:4521964-4522044 ( 19) ATTGCACA 1 chrV:15880879-15880959 ( 47) GTTACGAA 1 chrII:5966778-5966858 ( 41) GTTACGAA 1 chrX:15568179-15568259 ( 11) ATTTCACA 1 chrI:12040237-12040317 ( 45) ATTTCACA 1 chrX:1479241-1479321 ( 20) TTTTCGAA 1 chrIV:3726016-3726096 ( 73) TTTTCGAA 1 chrI:13423361-13423441 ( 34) TTTTCGAA 1 chrX:16814015-16814095 ( 10) ATTTCAAA 1 chrIV:4360676-4360756 ( 64) GTTGCAAA 1 chrI:13626372-13626452 ( 21) CTTTCGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTKCGMA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.69912 E= 1.7e-239 141 -281 -67 -417 -1414 -1414 -1414 174 -1414 -1414 -1414 174 -266 -1414 119 76 -1414 237 -1414 -1414 -350 -1414 233 -1414 74 115 -1414 -276 167 -1414 -1414 -1414 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTKCGMA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 181 E= 1.7e-239 0.834254 0.027624 0.121547 0.016575 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.049724 0.000000 0.441989 0.508287 0.000000 1.000000 0.000000 0.000000 0.027624 0.000000 0.972376 0.000000 0.524862 0.430939 0.000000 0.044199 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTKCGMA MEME-1 regular expression -------------------------------------------------------------------------------- ATT[TG]CG[AC]A -------------------------------------------------------------------------------- Time 4.73 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYGAAA MEME-2 width = 8 sites = 68 llr = 484 E-value = 2.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYGAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::1698 pos.-specific C :::6131: probability G ::2:81:2 matrix T aa84:::: bits 2.4 2.1 1.9 1.7 ** Relative 1.4 ** * * Entropy 1.2 ***** ** (10.3 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTCGAAA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:16132393-16132473 29 3.08e-05 AAAATCAACA TTTCGAAA CATTGCGAAA chrIII:5785692-5785772 13 3.08e-05 AGGAGAAACG TTTCGAAA ACGATTTCGC chrIII:5939473-5939553 34 3.08e-05 TTCGCAATAC TTTCGAAA AGTATCGGAA chrII:4173978-4174058 16 3.08e-05 ATATATGACT TTTCGAAA AAAATTGCAT chrII:2995018-2995098 38 3.08e-05 TTTTTCGACG TTTCGAAA AATTTCGCAA chrX:11792116-11792196 18 3.08e-05 AGTCGAAAGA TTTCGAAA TGACAAAATT chrIV:4318224-4318304 49 3.08e-05 TTTCGCAATA TTTCGAAA AAAATGATTA chrIII:10747762-10747842 37 3.08e-05 GCACGAAACT TTTCGAAA ATGCGAATTA chrIII:10202541-10202621 21 3.08e-05 TAACTTGAGA TTTCGAAA TAAAATGTGC chrIV:4317833-4317913 21 5.00e-05 AAATCGATTA TTTCGCAA TATCGTAAAA chrIII:4242608-4242688 38 5.00e-05 GCCCGCCCTT TTTCGCAA TATTTCGCAA chrI:12920709-12920789 71 5.00e-05 AATTGAATTG TTTCGCAA CT chrI:3266063-3266143 65 5.00e-05 ATTTTCGGGT TTTCGCAA TACTTTCT chrV:12261532-12261612 34 5.00e-05 TGCAGATCAA TTTCGCAA TAGACTATAT chrIII:1284741-1284821 45 5.00e-05 ATTGCATATT TTTCGCAA AAGGTTGCGT chrV:16395329-16395409 27 5.00e-05 AAGATGTGGA TTTCGCAA TATTTCGCAA chrII:14488800-14488880 38 9.75e-05 TTTTGGTGTT TTTTGAAA CTAGACGTGG chrIV:1953302-1953382 16 9.75e-05 ATGAATTTTT TTTTGAAA AATTGGTTTT chrX:5517894-5517974 46 9.75e-05 TGCCATTTGG TTTTGAAA TGATTGGGGT chrX:16930877-16930957 7 9.75e-05 TAGGTA TTTTGAAA CATTTCGAAC chrIV:8785035-8785115 17 9.75e-05 GCGAAATCTT TTTTGAAA AGCGAAAACT chrI:12966564-12966644 38 9.75e-05 CTTTGAGTCA TTTTGAAA CATACGTGCT chrV:10940893-10940973 22 1.18e-04 CGTGTTCCGA TTGCGAAA TATTGCGCAC chrIII:4018283-4018363 10 1.18e-04 AATAGACTA TTGCGAAA TATGCAGATA chrIV:16645654-16645734 11 1.18e-04 ATTTCGTGTA TTGCGAAA TAATCGATTT chrX:1528279-1528359 2 1.18e-04 T TTGCGAAA TAAAAAAATT chrII:2289614-2289694 45 1.18e-04 AATAGTCTCA TTGCGAAA TAGTTTCATT chrII:7392270-7392350 54 1.47e-04 TTTCGCAATC TTTTGCAA TAAGTGGGCC chrI:8905598-8905678 27 1.47e-04 CACAAATACA TTTTGCAA TTGTTTCGCA chrI:7861848-7861928 25 1.66e-04 GATTACGATC TTTCGAAG ACAATTTAAT chrIII:8355221-8355301 52 1.98e-04 CATTGCGAAA TTTCGGAA TATTTCATCA chrX:573443-573523 61 1.98e-04 GCTGATGTTC TTGCGCAA TAATAGTTAA chrX:10419914-10419994 72 2.40e-04 AGGGAAGGTG TTGTGAAA T chrIII:4191387-4191467 49 2.71e-04 TCTCCAATAC TTTCCAAA GAGACGCAGA chrX:10678156-10678236 5 2.71e-04 TAGT TTTCCAAA CGGCAAAGTT chrII:10950375-10950455 3 2.71e-04 AC TTTCCAAA AAAACACAAC chrIII:4035127-4035207 48 2.71e-04 TAATTTCCCA TTTCCAAA TCGGACGGGA chrI:7476700-7476780 41 2.71e-04 TTTAGAGCAA TTTCCAAA ACTTGTGAGG chrI:8027883-8027963 23 3.20e-04 ATTCACTAAG TTTTGAAG ATTATTTGCC chrIII:8868495-8868575 62 3.20e-04 GAAATTAATA TTTTGAAG TCTTGTTTTG chrX:621543-621623 49 3.20e-04 TACATGTAAG TTTTGAAG ATTTAGAGAA chrI:11964860-11964940 72 3.20e-04 TTTATGCTTA TTTTGAAG C chrV:14415298-14415378 67 3.68e-04 CTTTTATCGG ttgtgcaa acaccg chrIII:3703508-3703588 28 3.68e-04 CGTGATAGTT TTTTGGAA CACGAATATC chrX:5847505-5847585 3 3.68e-04 CC TTTTGGAA TCGATTGTTC chrII:4999314-4999394 54 4.42e-04 GTGACGGTGT TTGCGGAA GAGAGAGGCA chrII:10445896-10445976 58 4.42e-04 CGCCCGTCTC TTTTGCAG AGCGCTAGTC chrIV:6442357-6442437 42 4.42e-04 GGATTTCCAC TTTTGCAG TAAGTTTTAA chrX:14819667-14819747 10 4.42e-04 GTAGTACTT TTTTGCAG TCGGTGACGA chrI:12532221-12532301 20 4.42e-04 AATTGCGAAA TTTTGCAG GAAATCGTTA chrV:4024985-4025065 62 4.42e-04 TTACGAAATA TTTCGCCA CTGAAGTATA chrV:10938842-10938922 33 4.42e-04 TATTCACTCG TTGCGGAA TATTTCGCAA chrIII:5581188-5581268 18 4.42e-04 TGAGGAAAGT TTGCGGAA CAAAAATCAA chrX:13687317-13687397 43 4.62e-04 CCGTTGATTT TTGCGCAG ATATTGATGA chrI:3785916-3785996 9 4.62e-04 TTCGCAAT TTGCGCAG TGAGAGTTTC chrIII:2376049-2376129 59 5.10e-04 CAACGTCTCA TTTTCAAA CTAATTTGCG chrX:6449213-6449293 55 5.89e-04 ATCAGATAAG TTTTGACA AGAGAGAGAA chrV:19429807-19429887 67 5.89e-04 TGATCAGCTA TTTTGACA AGGTCC chrX:1479241-1479321 43 5.89e-04 TGTGTAATTG TTTCAAAA ATCTGATGCA chrII:8675462-8675542 63 5.89e-04 GAATTCAGAA TTTTGACA GCAAAAAAGG chrIII:9490956-9491036 30 5.89e-04 TTGCGAAATA TTTCAAAA TAGCATTTGA chrV:16160230-16160310 35 5.89e-04 TTTCGCAATA TTTCAAAA TCTCATTGGA chrI:13391250-13391330 10 5.89e-04 CACATCCGA TTTCAAAA TATTTTTTTT chrV:16120645-16120725 21 5.89e-04 TTTAACTGAA TTTCAAAA ATCATCTCAA chrV:13909657-13909737 56 6.70e-04 TTTCGCAATA TTTTCCAA TAAGTTAAAG chrV:12100958-12101038 68 6.70e-04 ATTTCGCAAT TTTTCCAA TTGAA chrX:15568179-15568259 57 8.50e-04 AAATTCTGGT TTTCGGCA ATCCAAAACT chrV:18901650-18901730 20 1.47e-03 AATAAAGGTG TTTCTAAA AAAATCAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:16132393-16132473 3.1e-05 28_[+2]_44 chrIII:5785692-5785772 3.1e-05 12_[+2]_60 chrIII:5939473-5939553 3.1e-05 33_[+2]_39 chrII:4173978-4174058 3.1e-05 15_[+2]_57 chrII:2995018-2995098 3.1e-05 37_[+2]_35 chrX:11792116-11792196 3.1e-05 17_[+2]_55 chrIV:4318224-4318304 3.1e-05 48_[+2]_24 chrIII:10747762-10747842 3.1e-05 36_[+2]_36 chrIII:10202541-10202621 3.1e-05 20_[+2]_52 chrIV:4317833-4317913 5e-05 20_[+2]_52 chrIII:4242608-4242688 5e-05 37_[+2]_35 chrI:12920709-12920789 5e-05 70_[+2]_2 chrI:3266063-3266143 5e-05 64_[+2]_8 chrV:12261532-12261612 5e-05 33_[+2]_39 chrIII:1284741-1284821 5e-05 44_[+2]_28 chrV:16395329-16395409 5e-05 26_[+2]_46 chrII:14488800-14488880 9.8e-05 37_[+2]_35 chrIV:1953302-1953382 9.8e-05 15_[+2]_57 chrX:5517894-5517974 9.8e-05 45_[+2]_27 chrX:16930877-16930957 9.8e-05 6_[+2]_66 chrIV:8785035-8785115 9.8e-05 16_[+2]_56 chrI:12966564-12966644 9.8e-05 37_[+2]_35 chrV:10940893-10940973 0.00012 21_[+2]_51 chrIII:4018283-4018363 0.00012 9_[+2]_63 chrIV:16645654-16645734 0.00012 10_[+2]_62 chrX:1528279-1528359 0.00012 1_[+2]_71 chrII:2289614-2289694 0.00012 44_[+2]_28 chrII:7392270-7392350 0.00015 53_[+2]_19 chrI:8905598-8905678 0.00015 26_[+2]_46 chrI:7861848-7861928 0.00017 24_[+2]_48 chrIII:8355221-8355301 0.0002 51_[+2]_21 chrX:573443-573523 0.0002 60_[+2]_12 chrX:10419914-10419994 0.00024 71_[+2]_1 chrIII:4191387-4191467 0.00027 48_[+2]_24 chrX:10678156-10678236 0.00027 4_[+2]_68 chrII:10950375-10950455 0.00027 2_[+2]_70 chrIII:4035127-4035207 0.00027 47_[+2]_25 chrI:7476700-7476780 0.00027 40_[+2]_32 chrI:8027883-8027963 0.00032 22_[+2]_50 chrIII:8868495-8868575 0.00032 61_[+2]_11 chrX:621543-621623 0.00032 48_[+2]_24 chrI:11964860-11964940 0.00032 71_[+2]_1 chrV:14415298-14415378 0.00037 66_[+2]_6 chrIII:3703508-3703588 0.00037 27_[+2]_45 chrX:5847505-5847585 0.00037 2_[+2]_70 chrII:4999314-4999394 0.00044 53_[+2]_19 chrII:10445896-10445976 0.00044 57_[+2]_15 chrIV:6442357-6442437 0.00044 41_[+2]_31 chrX:14819667-14819747 0.00044 9_[+2]_63 chrI:12532221-12532301 0.00044 19_[+2]_53 chrV:4024985-4025065 0.00044 61_[+2]_11 chrV:10938842-10938922 0.00044 32_[+2]_40 chrIII:5581188-5581268 0.00044 17_[+2]_55 chrX:13687317-13687397 0.00046 42_[+2]_30 chrI:3785916-3785996 0.00046 8_[+2]_64 chrIII:2376049-2376129 0.00051 58_[+2]_14 chrX:6449213-6449293 0.00059 54_[+2]_18 chrV:19429807-19429887 0.00059 66_[+2]_6 chrX:1479241-1479321 0.00059 42_[+2]_30 chrII:8675462-8675542 0.00059 62_[+2]_10 chrIII:9490956-9491036 0.00059 29_[+2]_43 chrV:16160230-16160310 0.00059 34_[+2]_38 chrI:13391250-13391330 0.00059 9_[+2]_63 chrV:16120645-16120725 0.00059 20_[+2]_52 chrV:13909657-13909737 0.00067 55_[+2]_17 chrV:12100958-12101038 0.00067 67_[+2]_5 chrX:15568179-15568259 0.00085 56_[+2]_16 chrV:18901650-18901730 0.0015 19_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYGAAA width=8 seqs=68 chrV:16132393-16132473 ( 29) TTTCGAAA 1 chrIII:5785692-5785772 ( 13) TTTCGAAA 1 chrIII:5939473-5939553 ( 34) TTTCGAAA 1 chrII:4173978-4174058 ( 16) TTTCGAAA 1 chrII:2995018-2995098 ( 38) TTTCGAAA 1 chrX:11792116-11792196 ( 18) TTTCGAAA 1 chrIV:4318224-4318304 ( 49) TTTCGAAA 1 chrIII:10747762-10747842 ( 37) TTTCGAAA 1 chrIII:10202541-10202621 ( 21) TTTCGAAA 1 chrIV:4317833-4317913 ( 21) TTTCGCAA 1 chrIII:4242608-4242688 ( 38) TTTCGCAA 1 chrI:12920709-12920789 ( 71) TTTCGCAA 1 chrI:3266063-3266143 ( 65) TTTCGCAA 1 chrV:12261532-12261612 ( 34) TTTCGCAA 1 chrIII:1284741-1284821 ( 45) TTTCGCAA 1 chrV:16395329-16395409 ( 27) TTTCGCAA 1 chrII:14488800-14488880 ( 38) TTTTGAAA 1 chrIV:1953302-1953382 ( 16) TTTTGAAA 1 chrX:5517894-5517974 ( 46) TTTTGAAA 1 chrX:16930877-16930957 ( 7) TTTTGAAA 1 chrIV:8785035-8785115 ( 17) TTTTGAAA 1 chrI:12966564-12966644 ( 38) TTTTGAAA 1 chrV:10940893-10940973 ( 22) TTGCGAAA 1 chrIII:4018283-4018363 ( 10) TTGCGAAA 1 chrIV:16645654-16645734 ( 11) TTGCGAAA 1 chrX:1528279-1528359 ( 2) TTGCGAAA 1 chrII:2289614-2289694 ( 45) TTGCGAAA 1 chrII:7392270-7392350 ( 54) TTTTGCAA 1 chrI:8905598-8905678 ( 27) TTTTGCAA 1 chrI:7861848-7861928 ( 25) TTTCGAAG 1 chrIII:8355221-8355301 ( 52) TTTCGGAA 1 chrX:573443-573523 ( 61) TTGCGCAA 1 chrX:10419914-10419994 ( 72) TTGTGAAA 1 chrIII:4191387-4191467 ( 49) TTTCCAAA 1 chrX:10678156-10678236 ( 5) TTTCCAAA 1 chrII:10950375-10950455 ( 3) TTTCCAAA 1 chrIII:4035127-4035207 ( 48) TTTCCAAA 1 chrI:7476700-7476780 ( 41) TTTCCAAA 1 chrI:8027883-8027963 ( 23) TTTTGAAG 1 chrIII:8868495-8868575 ( 62) TTTTGAAG 1 chrX:621543-621623 ( 49) TTTTGAAG 1 chrI:11964860-11964940 ( 72) TTTTGAAG 1 chrV:14415298-14415378 ( 67) TTGTGCAA 1 chrIII:3703508-3703588 ( 28) TTTTGGAA 1 chrX:5847505-5847585 ( 3) TTTTGGAA 1 chrII:4999314-4999394 ( 54) TTGCGGAA 1 chrII:10445896-10445976 ( 58) TTTTGCAG 1 chrIV:6442357-6442437 ( 42) TTTTGCAG 1 chrX:14819667-14819747 ( 10) TTTTGCAG 1 chrI:12532221-12532301 ( 20) TTTTGCAG 1 chrV:4024985-4025065 ( 62) TTTCGCCA 1 chrV:10938842-10938922 ( 33) TTGCGGAA 1 chrIII:5581188-5581268 ( 18) TTGCGGAA 1 chrX:13687317-13687397 ( 43) TTGCGCAG 1 chrI:3785916-3785996 ( 9) TTGCGCAG 1 chrIII:2376049-2376129 ( 59) TTTTCAAA 1 chrX:6449213-6449293 ( 55) TTTTGACA 1 chrV:19429807-19429887 ( 67) TTTTGACA 1 chrX:1479241-1479321 ( 43) TTTCAAAA 1 chrII:8675462-8675542 ( 63) TTTTGACA 1 chrIII:9490956-9491036 ( 30) TTTCAAAA 1 chrV:16160230-16160310 ( 35) TTTCAAAA 1 chrI:13391250-13391330 ( 10) TTTCAAAA 1 chrV:16120645-16120725 ( 21) TTTCAAAA 1 chrV:13909657-13909737 ( 56) TTTTCCAA 1 chrV:12100958-12101038 ( 68) TTTTCCAA 1 chrX:15568179-15568259 ( 57) TTTCGGCA 1 chrV:18901650-18901730 ( 20) TTTCTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85972 E= 2.4e-001 -1273 -1273 -1273 174 -1273 -1273 -1273 174 -1273 -1273 -2 143 -1273 167 -1273 35 -209 -72 204 -434 94 60 -91 -1273 156 -140 -1273 -1273 142 -1273 -26 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.4e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.191176 0.808824 0.000000 0.617647 0.000000 0.382353 0.073529 0.117647 0.794118 0.014706 0.602941 0.294118 0.102941 0.000000 0.926471 0.073529 0.000000 0.000000 0.838235 0.000000 0.161765 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGAAA MEME-2 regular expression -------------------------------------------------------------------------------- TTT[CT]G[AC]AA -------------------------------------------------------------------------------- Time 8.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACGMA MEME-3 width = 8 sites = 19 llr = 175 E-value = 2.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACGMA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:a214a pos.-specific C ::::6:5: probability G a:a:291: matrix T :::::::: bits 2.4 * * 2.1 * * 1.9 * * * 1.7 **** * * Relative 1.4 **** * * Entropy 1.2 **** * * (13.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGMA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4191387-4191467 57 8.43e-06 ACTTTCCAAA GAGACGCA GACATAAACG chrV:16132393-16132473 5 8.43e-06 TTCA GAGACGCA GGAAGTAAAA chrV:2057488-2057568 51 8.43e-06 CGCCCACTAA GAGACGCA GAAATCACAA chrIII:10357926-10358006 48 8.43e-06 GCGATGGAGA GAGACGCA GAGAAAGTTG chrX:6836279-6836359 31 8.43e-06 GTGCAAAGGG GAGACGCA GGCAGGTACA chrI:12106430-12106510 25 8.43e-06 CTGAACAGCG GAGACGCA GACAGCTAAG chrII:5966778-5966858 26 8.43e-06 TAGAGAGCAC GAGACGCA GACAAGAGTT chrIV:5665475-5665555 3 2.20e-05 TT GAGACGAA CAGCTGGTGT chrI:3032868-3032948 34 2.20e-05 GCGTGCCAAC GAGACGAA GAATGCGCCA chrII:4999314-4999394 64 3.04e-05 TTGCGGAAGA GAGAGGCA AGATGAAAA chrII:4173978-4174058 65 4.40e-05 TTGATTTTTC GAGAAGCA TGTCCTTT chrX:5517894-5517974 18 5.76e-05 TGAGGAGACG GAGAGGAA TAGTCGAATT chrI:9788004-9788084 10 5.76e-05 CGGGTCAGA GAGAGGAA CGAGCGACGC chrII:9497476-9497556 10 8.80e-05 TCTGCCCCG GAGACGGA AGCAGAGAAG chrV:8288561-8288641 50 8.80e-05 AGGGAAGTGA GAGAAGAA GCTCTGAGTG chrX:10419914-10419994 52 8.80e-05 TGCGCGCAGA GAGAAGAA AGAGGGAAGG chrIV:6555830-6555910 14 8.80e-05 AGAAGTTTCC GAGAAGAA ATGACACAAT chrII:7346126-7346206 53 1.02e-04 GCCACAACTG GAGACACA GACTTCGTTT chrV:10273714-10273794 22 1.24e-04 ATGGCACGTG GAGACAAA GAGCATTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGMA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4191387-4191467 8.4e-06 56_[+3]_16 chrV:16132393-16132473 8.4e-06 4_[+3]_68 chrV:2057488-2057568 8.4e-06 50_[+3]_22 chrIII:10357926-10358006 8.4e-06 47_[+3]_25 chrX:6836279-6836359 8.4e-06 30_[+3]_42 chrI:12106430-12106510 8.4e-06 24_[+3]_48 chrII:5966778-5966858 8.4e-06 25_[+3]_47 chrIV:5665475-5665555 2.2e-05 2_[+3]_70 chrI:3032868-3032948 2.2e-05 33_[+3]_39 chrII:4999314-4999394 3e-05 63_[+3]_9 chrII:4173978-4174058 4.4e-05 64_[+3]_8 chrX:5517894-5517974 5.8e-05 17_[+3]_55 chrI:9788004-9788084 5.8e-05 9_[+3]_63 chrII:9497476-9497556 8.8e-05 9_[+3]_63 chrV:8288561-8288641 8.8e-05 49_[+3]_23 chrX:10419914-10419994 8.8e-05 51_[+3]_21 chrIV:6555830-6555910 8.8e-05 13_[+3]_59 chrII:7346126-7346206 0.0001 52_[+3]_20 chrV:10273714-10273794 0.00012 21_[+3]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGMA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACGMA width=8 seqs=19 chrIII:4191387-4191467 ( 57) GAGACGCA 1 chrV:16132393-16132473 ( 5) GAGACGCA 1 chrV:2057488-2057568 ( 51) GAGACGCA 1 chrIII:10357926-10358006 ( 48) GAGACGCA 1 chrX:6836279-6836359 ( 31) GAGACGCA 1 chrI:12106430-12106510 ( 25) GAGACGCA 1 chrII:5966778-5966858 ( 26) GAGACGCA 1 chrIV:5665475-5665555 ( 3) GAGACGAA 1 chrI:3032868-3032948 ( 34) GAGACGAA 1 chrII:4999314-4999394 ( 64) GAGAGGCA 1 chrII:4173978-4174058 ( 65) GAGAAGCA 1 chrX:5517894-5517974 ( 18) GAGAGGAA 1 chrI:9788004-9788084 ( 10) GAGAGGAA 1 chrII:9497476-9497556 ( 10) GAGACGGA 1 chrV:8288561-8288641 ( 50) GAGAAGAA 1 chrX:10419914-10419994 ( 52) GAGAAGAA 1 chrIV:6555830-6555910 ( 14) GAGAAGAA 1 chrII:7346126-7346206 ( 53) GAGACACA 1 chrV:10273714-10273794 ( 22) GAGACAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGMA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 2.6e+002 -1089 -1089 237 -1089 167 -1089 -1089 -1089 -1089 -1089 237 -1089 167 -1089 -1089 -1089 -57 171 -29 -1089 -157 -1089 221 -1089 43 144 -188 -1089 167 -1089 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGMA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.6e+002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.210526 0.631579 0.157895 0.000000 0.105263 0.000000 0.894737 0.000000 0.421053 0.526316 0.052632 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGMA MEME-3 regular expression -------------------------------------------------------------------------------- GAGA[CA]G[CA]A -------------------------------------------------------------------------------- Time 11.78 secs. ******************************************************************************** ******************************************************************************** MOTIF SCGCCAAC MEME-4 width = 8 sites = 15 llr = 143 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGCCAAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::377: pos.-specific C 5a:a721a probability G 5:a::13: matrix T :::::::: bits 2.4 *** * 2.1 *** * 1.9 *** * 1.7 *** * Relative 1.4 ***** * Entropy 1.2 ***** * (13.7 bits) 0.9 ***** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCAAC consensus G ACG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12679785-12679865 19 5.22e-06 ATTTAAATGT CCGCCAAC AACGATGCTC chrIII:2376049-2376129 45 1.04e-05 TCTCACCTTG GCGCCAAC GTCTCATTTT chrX:15860812-15860892 39 1.04e-05 GCGAGAGTTG GCGCCAAC GTGAATTCTC chrIII:5785692-5785772 51 1.04e-05 ATCGAATTAT GCGCCAAC GTGCCGCTGC chrX:4145597-4145677 57 1.37e-05 TCTCCTTACT CCGCCAGC ATAATGTGGC chrIV:4360676-4360756 16 1.69e-05 CACGAGAAAT GCGCCAGC ACACTACCTT chrI:3032868-3032948 46 1.69e-05 GACGAAGAAT GCGCCAGC AGGCGTCCTT chrV:2057488-2057568 40 2.02e-05 AATTTAGGCT CCGCCCAC TAAGAGACGC chrIII:4242608-4242688 26 2.54e-05 GGCCTAGACT CCGCCCGC CCTTTTTCGC chrII:15120138-15120218 22 3.58e-05 GATGCATTGT CCGCAAAC ACGGCGGCTG chrI:13411580-13411660 53 3.58e-05 AGGTTGCAAT CCGCAAAC ACACTGACAC chrIII:11112867-11112947 6 4.43e-05 CAAAC GCGCAAAC AAAAAGTGAG chrV:11585374-11585454 41 5.07e-05 GTGTACACAA CCGCCGAC ACCTAGCGAG chrIV:4880863-4880943 61 5.92e-05 CGAGTTCCGC GCGCCACC TTCCTTTGTG chrIV:4930827-4930907 32 7.49e-05 GGTCTCCCTC CCGCACAC GTAACATCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12679785-12679865 5.2e-06 18_[+4]_54 chrIII:2376049-2376129 1e-05 44_[+4]_28 chrX:15860812-15860892 1e-05 38_[+4]_34 chrIII:5785692-5785772 1e-05 50_[+4]_22 chrX:4145597-4145677 1.4e-05 56_[+4]_16 chrIV:4360676-4360756 1.7e-05 15_[+4]_57 chrI:3032868-3032948 1.7e-05 45_[+4]_27 chrV:2057488-2057568 2e-05 39_[+4]_33 chrIII:4242608-4242688 2.5e-05 25_[+4]_47 chrII:15120138-15120218 3.6e-05 21_[+4]_51 chrI:13411580-13411660 3.6e-05 52_[+4]_20 chrIII:11112867-11112947 4.4e-05 5_[+4]_67 chrV:11585374-11585454 5.1e-05 40_[+4]_32 chrIV:4880863-4880943 5.9e-05 60_[+4]_12 chrIV:4930827-4930907 7.5e-05 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGCCAAC width=8 seqs=15 chrII:12679785-12679865 ( 19) CCGCCAAC 1 chrIII:2376049-2376129 ( 45) GCGCCAAC 1 chrX:15860812-15860892 ( 39) GCGCCAAC 1 chrIII:5785692-5785772 ( 51) GCGCCAAC 1 chrX:4145597-4145677 ( 57) CCGCCAGC 1 chrIV:4360676-4360756 ( 16) GCGCCAGC 1 chrI:3032868-3032948 ( 46) GCGCCAGC 1 chrV:2057488-2057568 ( 40) CCGCCCAC 1 chrIII:4242608-4242688 ( 26) CCGCCCGC 1 chrII:15120138-15120218 ( 22) CCGCAAAC 1 chrI:13411580-13411660 ( 53) CCGCAAAC 1 chrIII:11112867-11112947 ( 6) GCGCAAAC 1 chrV:11585374-11585454 ( 41) CCGCCGAC 1 chrIV:4880863-4880943 ( 61) GCGCCACC 1 chrIV:4930827-4930907 ( 32) CCGCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 1.8e+004 -1055 146 127 -1055 -1055 237 -1055 -1055 -1055 -1055 237 -1055 -1055 237 -1055 -1055 -23 192 -1055 -1055 123 5 -154 -1055 109 -154 46 -1055 -1055 237 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.8e+004 0.000000 0.533333 0.466667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.733333 0.000000 0.000000 0.733333 0.200000 0.066667 0.000000 0.666667 0.066667 0.266667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCCAAC MEME-4 regular expression -------------------------------------------------------------------------------- [CG]CGC[CA][AC][AG]C -------------------------------------------------------------------------------- Time 15.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTGCGTC MEME-5 width = 8 sites = 6 llr = 66 E-value = 3.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTGCGTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :7::a::a probability G :::a:a:: matrix T a3a:::a: bits 2.4 *** * 2.1 *** * 1.9 *** * 1.7 * ****** Relative 1.4 * ****** Entropy 1.2 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGCGTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15860812-15860892 3 7.35e-06 TA TCTGCGTC TCTCACGCCC chrII:12042734-12042814 16 7.35e-06 ACCAAGTTTC TCTGCGTC TCCACGGCTT chrV:12697654-12697734 31 7.35e-06 CTCTCGAATT TCTGCGTC GATTAGAATA chrV:5081098-5081178 14 7.35e-06 TGTGTAGCCG TCTGCGTC TATTCCTTAA chrX:13957212-13957292 40 1.87e-05 TGTTGTGTTC TTTGCGTC TCCAGGTTTC chrI:3266063-3266143 15 1.87e-05 AGAAAACCGA TTTGCGTC AACATGGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGCGTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15860812-15860892 7.3e-06 2_[+5]_70 chrII:12042734-12042814 7.3e-06 15_[+5]_57 chrV:12697654-12697734 7.3e-06 30_[+5]_42 chrV:5081098-5081178 7.3e-06 13_[+5]_59 chrX:13957212-13957292 1.9e-05 39_[+5]_33 chrI:3266063-3266143 1.9e-05 14_[+5]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGCGTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTGCGTC width=8 seqs=6 chrX:15860812-15860892 ( 3) TCTGCGTC 1 chrII:12042734-12042814 ( 16) TCTGCGTC 1 chrV:12697654-12697734 ( 31) TCTGCGTC 1 chrV:5081098-5081178 ( 14) TCTGCGTC 1 chrX:13957212-13957292 ( 40) TTTGCGTC 1 chrI:3266063-3266143 ( 15) TTTGCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGCGTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 3.8e+004 -923 -923 -923 174 -923 178 -923 15 -923 -923 -923 174 -923 -923 237 -923 -923 237 -923 -923 -923 -923 237 -923 -923 -923 -923 174 -923 237 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGCGTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGCGTC MEME-5 regular expression -------------------------------------------------------------------------------- T[CT]TGCGTC -------------------------------------------------------------------------------- Time 18.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:18901650-18901730 3.21e-03 37_[+2(5.00e-05)]_35 chrV:20522367-20522447 2.23e-03 34_[+2(5.00e-05)]_38 chrIII:10202541-10202621 4.96e-03 20_[+2(3.08e-05)]_12_[+2(5.00e-05)]_\ 32 chrX:16147349-16147429 4.79e-03 37_[+2(5.00e-05)]_35 chrV:16120645-16120725 1.75e-02 38_[+1(5.15e-05)]_34 chrI:6460325-6460405 6.19e-05 24_[+1(5.15e-05)]_48 chrV:16395329-16395409 2.23e-03 26_[+2(5.00e-05)]_2_[+2(5.00e-05)]_\ 36 chrV:4042019-4042099 3.28e-03 30_[+2(5.00e-05)]_42 chrIII:5581188-5581268 5.96e-03 51_[+1(5.15e-05)]_21 chrII:1501786-1501866 1.44e-03 3_[+2(5.00e-05)]_69 chrII:2289614-2289694 6.40e-03 43_[+1(5.15e-05)]_8_[+1(5.15e-05)]_\ 13 chrI:11964860-11964940 5.18e-04 13_[+1(5.15e-05)]_59 chrIII:3657653-3657733 4.13e-03 40_[+1(5.15e-05)]_32 chrI:13391250-13391330 4.10e-04 38_[+2(5.00e-05)]_34 chrIII:1284741-1284821 1.39e-03 44_[+2(5.00e-05)]_28 chrI:12966564-12966644 5.82e-04 4_[+2(5.00e-05)]_25_[+2(9.75e-05)]_\ 35 chrV:12261532-12261612 8.94e-03 33_[+2(5.00e-05)]_9_[+2(5.00e-05)]_\ 22 chrI:14491003-14491083 4.92e-01 80 chrIII:10747762-10747842 5.15e-04 36_[+2(3.08e-05)]_9_[+1(5.15e-05)]_\ 19 chrI:7476700-7476780 8.06e-03 6_[+2(5.00e-05)]_66 chrIV:6622309-6622389 1.82e-01 80 chrII:11578456-11578536 9.29e-04 46_[+1(5.15e-05)]_26 chrV:16160230-16160310 4.34e-03 24_[+2(5.00e-05)]_48 chrIII:4204187-4204267 7.61e-03 54_[+1(5.15e-05)]_18 chrV:5081098-5081178 1.03e-05 13_[+5(7.35e-06)]_22_[+2(5.00e-05)]_\ 29 chrV:10938842-10938922 2.89e-03 42_[+2(5.00e-05)]_30 chrX:1528279-1528359 7.85e-03 42_[+1(5.15e-05)]_30 chrI:3785916-3785996 3.90e-03 49_[+2(5.00e-05)]_23 chrIV:14532503-14532583 1.96e-03 25_[+1(5.15e-05)]_47 chrV:4042220-4042300 6.01e-01 80 chrIII:5163095-5163175 1.71e-03 49_[+1(5.15e-05)]_23 chrV:4844759-4844839 7.41e-04 26_[+2(5.00e-05)]_46 chrX:4214855-4214935 8.24e-03 25_[+2(5.00e-05)]_47 chrX:16814015-16814095 5.02e-02 80 chrIII:8490382-8490462 7.53e-03 40_[+1(5.15e-05)]_32 chrX:573443-573523 2.86e-03 39_[+2(5.00e-05)]_33 chrIII:8355221-8355301 1.05e-03 42_[+1(5.15e-05)]_30 chrIV:4318224-4318304 3.75e-03 12_[+2(5.00e-05)]_18_[+2(5.00e-05)]_\ 2_[+2(3.08e-05)]_10_[+2(5.00e-05)]_6 chrII:11649409-11649489 7.90e-03 57_[+1(5.15e-05)]_15 chrV:1621667-1621747 1.65e-02 38_[+1(5.15e-05)]_34 chrIV:12527445-12527525 8.97e-04 38_[+1(5.15e-05)]_34 chrV:12697654-12697734 5.16e-05 30_[+5(7.35e-06)]_20_[+1(5.15e-05)]_\ 14 chrX:4521964-4522044 1.37e-02 80 chrX:8069439-8069519 5.71e-03 39_[+2(5.00e-05)]_33 chrX:11792116-11792196 1.04e-04 17_[+2(3.08e-05)]_7_[+1(5.15e-05)]_\ 40 chrV:9333661-9333741 2.80e-03 57_[+1(5.15e-05)]_15 chrII:1820028-1820108 1.74e-04 23_[+2(5.00e-05)]_49 chrI:6092073-6092153 2.65e-03 22_[+2(5.00e-05)]_50 chrII:1344611-1344691 1.22e-03 40_[+2(5.00e-05)]_32 chrIV:16645654-16645734 1.75e-02 9_[+1(5.15e-05)]_46_[+1(5.15e-05)]_\ 9 chrV:1472140-1472220 3.05e-03 23_[+1(5.15e-05)]_49 chrI:2312189-2312269 1.08e-02 66_[+1(5.15e-05)]_6 chrX:10576552-10576632 1.33e-03 30_[+2(5.00e-05)]_42 chrX:8257894-8257974 6.66e-03 27_[+2(5.00e-05)]_45 chrII:5966778-5966858 8.97e-04 25_[+3(8.43e-06)]_35_[+3(5.76e-05)]_\ 4 chrII:4856240-4856320 4.54e-03 28_[+1(5.15e-05)]_44 chrX:7791977-7792057 1.84e-04 47_[+1(5.15e-05)]_2_[+4(8.21e-05)]_\ 15 chrI:12106430-12106510 8.85e-04 24_[+3(8.43e-06)]_48 chrIV:3520539-3520619 2.99e-03 24_[+2(5.00e-05)]_48 chrX:6836279-6836359 1.08e-05 30_[+3(8.43e-06)]_18_[+2(3.08e-05)]_\ 16 chrX:7793575-7793655 3.39e-03 70_[+2(5.00e-05)]_2 chrI:10728805-10728885 8.94e-04 31_[+1(5.15e-05)]_41 chrII:2995018-2995098 1.91e-03 37_[+2(3.08e-05)]_2_[+2(5.00e-05)]_\ 25 chrX:10386131-10386211 7.29e-03 49_[+1(5.15e-05)]_23 chrIV:11006550-11006630 8.38e-03 25_[+1(5.15e-05)]_47 chrV:123585-123665 2.17e-03 48_[+2(3.08e-05)]_24 chrV:4024985-4025065 1.88e-03 80 chrV:5131528-5131608 3.04e-03 51_[+1(5.15e-05)]_21 chrII:8457586-8457666 2.78e-03 80 chrIII:13278243-13278323 1.40e-04 68_[+2(5.00e-05)]_4 chrI:7159349-7159429 1.68e-03 45_[+2(5.00e-05)]_27 chrIII:3637764-3637844 9.44e-03 38_[+1(5.15e-05)]_34 chrIV:8785035-8785115 1.16e-03 3_[+1(5.15e-05)]_5_[+2(9.75e-05)]_\ 56 chrX:8556721-8556801 3.77e-03 9_[+1(5.15e-05)]_63 chrV:5087167-5087247 9.17e-04 62_[+2(5.00e-05)]_10 chrIII:8529035-8529115 7.63e-03 25_[+1(5.15e-05)]_47 chrII:4173978-4174058 1.16e-04 15_[+2(3.08e-05)]_9_[+2(5.00e-05)]_\ 24_[+3(4.40e-05)]_8 chrIV:4545582-4545662 7.08e-03 27_[+2(5.00e-05)]_45 chrX:14476766-14476846 2.41e-03 24_[+1(9.01e-05)]_48 chrX:10194831-10194911 8.27e-01 80 chrX:14478368-14478448 3.70e-01 80 chrI:13411580-13411660 6.36e-02 52_[+4(3.58e-05)]_20 chrIV:7728515-7728595 1.34e-03 26_[+1(5.15e-05)]_46 chrI:8905598-8905678 1.52e-03 37_[+2(5.00e-05)]_35 chrII:15120138-15120218 5.54e-06 21_[+4(3.58e-05)]_24_[+2(5.00e-05)]_\ 19 chrX:5847505-5847585 3.38e-04 41_[+2(5.00e-05)]_31 chrV:6656836-6656916 5.33e-04 80 chrI:12426799-12426879 5.72e-03 31_[+1(5.15e-05)]_41 chrIII:4018283-4018363 2.50e-03 8_[+1(5.15e-05)]_52_[+1(5.15e-05)]_\ 4 chrV:2218934-2219014 9.65e-04 25_[+2(5.00e-05)]_47 chrI:13626372-13626452 8.36e-02 80 chrIII:9956819-9956899 2.02e-04 32_[+1(5.15e-05)]_40 chrV:11585374-11585454 2.04e-01 40_[+4(5.07e-05)]_32 chrV:12100958-12101038 4.54e-03 58_[+2(5.00e-05)]_14 chrV:5233943-5234023 9.44e-03 21_[+2(5.00e-05)]_51 chrII:6782816-6782896 4.80e-03 28_[+1(5.15e-05)]_44 chrV:3803494-3803574 3.44e-03 80 chrII:9281823-9281903 5.00e-04 36_[+1(5.15e-05)]_36 chrII:12042734-12042814 3.91e-04 15_[+5(7.35e-06)]_57 chrIV:7149158-7149238 4.46e-03 80 chrV:13551748-13551828 6.32e-03 26_[+1(5.15e-05)]_46 chrI:3266063-3266143 3.59e-06 14_[+5(1.87e-05)]_42_[+2(5.00e-05)]_\ 8 chrII:950599-950679 1.67e-02 4_[+1(5.15e-05)]_68 chrIII:5925843-5925923 3.17e-03 40_[+1(5.15e-05)]_32 chrI:9862760-9862840 1.37e-01 80 chrV:8130208-8130288 7.34e-02 80 chrI:13559914-13559994 8.64e-01 80 chrV:13463109-13463189 8.16e-04 42_[+5(8.95e-05)]_4_[+2(5.00e-05)]_\ 18 chrII:3684656-3684736 1.75e-02 30_[+1(5.15e-05)]_42 chrIV:5656298-5656378 4.38e-03 40_[+2(5.00e-05)]_32 chrV:15880879-15880959 5.44e-02 80 chrX:621543-621623 1.26e-01 80 chrI:12040237-12040317 2.05e-02 80 chrX:14557436-14557516 1.83e-03 41_[+1(5.15e-05)]_31 chrIV:6555830-6555910 1.94e-04 13_[+3(8.80e-05)]_9_[+2(5.00e-05)]_\ 42 chrIV:7391678-7391758 7.51e-05 44_[+1(5.15e-05)]_28 chrII:9117950-9118030 1.03e-01 80 chrIII:5939473-5939553 1.33e-03 22_[+2(5.00e-05)]_3_[+2(3.08e-05)]_\ 39 chrIV:6785974-6786054 1.30e-02 31_[+1(5.15e-05)]_41 chrV:18787567-18787647 4.78e-03 36_[+1(5.15e-05)]_36 chrI:12532221-12532301 1.84e-02 10_[+1(5.15e-05)]_62 chrII:6889555-6889635 2.11e-01 80 chrX:4662472-4662552 5.80e-01 80 chrV:13661103-13661183 1.13e-02 36_[+1(5.15e-05)]_36 chrI:3267722-3267802 9.82e-01 80 chrX:2083344-2083424 6.10e-03 44_[+1(5.15e-05)]_28 chrI:9788004-9788084 4.16e-02 9_[+3(5.76e-05)]_63 chrV:13909657-13909737 5.71e-03 45_[+2(5.00e-05)]_27 chrII:7392270-7392350 1.01e-04 43_[+2(5.00e-05)]_29 chrX:14819667-14819747 7.64e-02 80 chrIII:13716471-13716551 7.01e-03 49_[+1(5.15e-05)]_23 chrX:10419914-10419994 4.61e-03 51_[+3(8.80e-05)]_21 chrX:15339808-15339888 4.57e-03 49_[+1(5.15e-05)]_23 chrIII:13456022-13456102 4.92e-02 80 chrII:31705-31785 1.00e-02 52_[+2(3.08e-05)]_20 chrIII:5785692-5785772 1.02e-06 12_[+2(3.08e-05)]_4_[+2(5.00e-05)]_\ 18_[+4(1.04e-05)]_22 chrV:7955315-7955395 1.33e-03 80 chrII:7887461-7887541 7.11e-04 16_[+2(5.00e-05)]_56 chrV:8288561-8288641 1.55e-04 16_[+1(5.15e-05)]_25_[+3(8.80e-05)]_\ 23 chrI:12920709-12920789 4.26e-03 26_[+2(5.00e-05)]_36_[+2(5.00e-05)]_\ 2 chrV:6214110-6214190 7.09e-04 24_[+2(5.00e-05)]_48 chrV:20711925-20712005 8.88e-05 17_[+5(8.95e-05)]_31_[+2(5.00e-05)]_\ 16 chrII:9497476-9497556 2.97e-05 9_[+3(8.80e-05)]_39_[+1(5.15e-05)]_\ 16 chrX:1086658-1086738 8.33e-04 38_[+1(5.15e-05)]_34 chrIII:4035127-4035207 7.20e-03 20_[+1(8.24e-05)]_1_[+2(5.00e-05)]_\ 43 chrI:13423361-13423441 9.11e-03 34_[+2(3.08e-05)]_38 chrIII:1279337-1279417 2.04e-01 80 chrIII:4242608-4242688 7.30e-05 25_[+4(2.54e-05)]_4_[+2(5.00e-05)]_\ 2_[+2(5.00e-05)]_25 chrIV:9321253-9321333 5.83e-04 28_[+2(5.00e-05)]_44 chrX:16930877-16930957 2.04e-03 6_[+2(9.75e-05)]_1_[+1(8.24e-05)]_5_\ [+1(5.15e-05)]_31_[+1(5.15e-05)]_5 chrIII:5940883-5940963 2.92e-03 11_[+2(5.00e-05)]_61 chrIV:6442357-6442437 1.74e-01 80 chrIII:9490956-9491036 2.95e-02 80 chrX:15610652-15610732 1.40e-03 50_[+2(5.00e-05)]_22 chrX:5517894-5517974 4.73e-03 17_[+3(5.76e-05)]_20_[+2(9.75e-05)]_\ 27 chrIV:3726016-3726096 7.12e-04 80 chrII:15173343-15173423 9.86e-04 41_[+2(5.00e-05)]_31 chrIII:10807037-10807117 3.75e-04 30_[+1(5.15e-05)]_42 chrIII:10357926-10358006 1.61e-03 47_[+3(8.43e-06)]_25 chrIV:1953302-1953382 2.79e-01 15_[+2(9.75e-05)]_57 chrX:8236197-8236277 5.84e-03 27_[+2(5.00e-05)]_45 chrV:2057488-2057568 2.87e-07 22_[+1(5.15e-05)]_9_[+4(2.02e-05)]_\ 3_[+3(8.43e-06)]_22 chrX:13957212-13957292 3.08e-05 39_[+5(1.87e-05)]_20_[+2(5.00e-05)]_\ 5 chrII:11495516-11495596 3.84e-01 80 chrIV:16415753-16415833 2.71e-01 80 chrIII:8772661-8772741 8.82e-01 80 chrIII:4503479-4503559 4.30e-01 80 chrII:3553652-3553732 6.93e-01 80 chrX:8286343-8286423 1.11e-02 31_[+1(5.15e-05)]_41 chrV:727774-727854 1.63e-01 80 chrIV:10933161-10933241 2.58e-03 80 chrII:8216769-8216849 2.94e-02 80 chrII:8675462-8675542 5.03e-02 80 chrII:10950375-10950455 3.45e-01 80 chrV:16132393-16132473 1.72e-05 4_[+3(8.43e-06)]_16_[+2(3.08e-05)]_\ 1_[+1(5.15e-05)]_35 chrIII:4151802-4151882 1.91e-03 9_[+2(5.00e-05)]_63 chrX:15279379-15279459 5.66e-04 39_[+2(5.00e-05)]_33 chrIII:8868495-8868575 1.28e-02 80 chrX:4619733-4619813 6.05e-01 80 chrX:11604134-11604214 6.63e-01 80 chrV:5234145-5234225 1.07e-02 80 chrV:12318009-12318089 2.38e-01 80 chrI:8027883-8027963 1.07e-02 80 chrX:13687317-13687397 1.39e-03 21_[+2(5.00e-05)]_51 chrX:3022491-3022571 1.42e-03 2_[+2(5.00e-05)]_70 chrIV:4317833-4317913 8.51e-03 20_[+2(5.00e-05)]_18_[+2(5.00e-05)]_\ 2_[+2(9.75e-05)]_16 chrII:5320401-5320481 7.50e-01 80 chrIII:11101235-11101315 5.62e-01 80 chrV:7735131-7735211 1.37e-03 26_[+2(5.00e-05)]_46 chrIII:7724620-7724700 2.26e-03 23_[+1(5.15e-05)]_49 chrIV:3515566-3515646 1.67e-02 80 chrV:5576129-5576209 2.31e-03 27_[+2(3.08e-05)]_45 chrIII:10814729-10814809 9.79e-01 80 chrI:1719428-1719508 7.08e-03 32_[+2(5.00e-05)]_40 chrX:15568179-15568259 1.12e-02 80 chrII:5321788-5321868 4.93e-03 21_[+1(5.15e-05)]_51 chrII:7346126-7346206 7.07e-02 80 chrIV:658110-658190 5.59e-01 80 chrII:10445896-10445976 4.08e-02 80 chrII:12768386-12768466 7.49e-01 80 chrII:98144-98224 1.65e-01 51_[+1(8.24e-05)]_21 chrI:3032868-3032948 4.02e-04 33_[+3(2.20e-05)]_4_[+4(1.69e-05)]_\ 27 chrX:10678156-10678236 1.03e-02 33_[+2(3.08e-05)]_39 chrX:2071540-2071620 8.50e-01 80 chrII:10546780-10546860 3.11e-01 80 chrIV:14070770-14070850 1.35e-01 80 chrIII:4191387-4191467 1.12e-03 56_[+3(8.43e-06)]_16 chrIV:5665475-5665555 9.53e-06 2_[+3(2.20e-05)]_55_[+1(5.15e-05)]_\ 7 chrV:19421319-19421399 9.22e-03 21_[+2(5.00e-05)]_51 chrIII:3703508-3703588 3.27e-03 58_[+2(5.00e-05)]_14 chrIII:783360-783440 2.92e-04 17_[+2(5.00e-05)]_55 chrV:10273714-10273794 3.39e-01 80 chrX:1479241-1479321 3.74e-02 80 chrX:4146857-4146937 1.56e-01 80 chrIV:4360676-4360756 2.40e-03 15_[+4(1.69e-05)]_57 chrV:19429807-19429887 3.08e-01 80 chrIII:1533292-1533372 7.36e-01 80 chrIII:9805018-9805098 2.10e-02 65_[+2(5.00e-05)]_7 chrV:13088321-13088401 3.55e-01 80 chrII:5886149-5886229 7.68e-04 7_[+2(5.00e-05)]_65 chrIII:1674996-1675076 6.97e-01 80 chrI:9383840-9383920 6.71e-02 80 chrV:9545609-9545689 3.05e-01 80 chrIII:10507009-10507089 3.70e-02 80 chrIV:4880863-4880943 1.04e-01 60_[+4(5.92e-05)]_12 chrX:6449213-6449293 7.56e-02 80 chrI:7861848-7861928 2.33e-02 80 chrIII:7142228-7142308 4.63e-01 80 chrV:14415298-14415378 7.24e-02 80 chrX:15045598-15045678 6.63e-01 80 chrV:10940893-10940973 2.02e-04 20_[+1(5.15e-05)]_2_[+1(1.24e-05)]_\ 42 chrIII:11112867-11112947 1.00e-01 5_[+4(4.43e-05)]_67 chrII:14291034-14291114 9.37e-01 80 chrII:8091703-8091783 3.71e-01 80 chrII:5335581-5335661 5.88e-01 80 chrII:6347855-6347935 8.69e-01 80 chrX:4137635-4137715 8.01e-03 15_[+1(5.15e-05)]_57 chrII:12679785-12679865 6.86e-02 18_[+4(5.22e-06)]_17_[+4(1.37e-05)]_\ 29 chrII:4999314-4999394 1.36e-03 63_[+3(3.04e-05)]_9 chrI:2668792-2668872 5.51e-01 80 chrIII:348144-348224 4.60e-01 80 chrX:4145597-4145677 4.50e-03 56_[+4(1.37e-05)]_16 chrX:15860812-15860892 1.81e-04 2_[+5(7.35e-06)]_28_[+4(1.04e-05)]_\ 34 chrI:12576420-12576500 1.99e-02 80 chrIII:2376049-2376129 3.25e-04 44_[+4(1.04e-05)]_28 chrII:14488800-14488880 2.75e-02 37_[+2(9.75e-05)]_35 chrII:506153-506233 2.72e-01 80 chrX:12207330-12207410 6.79e-01 80 chrIV:4930827-4930907 4.20e-02 31_[+4(7.49e-05)]_41 chrX:1452652-1452732 9.48e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************