******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/zip-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:13153151-13153231 1.0000 80 chrX:13381502-13381582 1.0000 80 chrIII:8086175-8086255 1.0000 80 chrIV:6209469-6209549 1.0000 80 chrV:5594202-5594282 1.0000 80 chrV:699205-699285 1.0000 80 chrI:5486307-5486387 1.0000 80 chrV:4164730-4164810 1.0000 80 chrIII:2076903-2076983 1.0000 80 chrX:1044497-1044577 1.0000 80 chrX:14510520-14510600 1.0000 80 chrV:104128-104208 1.0000 80 chrIII:5581216-5581296 1.0000 80 chrV:5085235-5085315 1.0000 80 chrV:11042703-11042783 1.0000 80 chrX:10859268-10859348 1.0000 80 chrIV:11173499-11173579 1.0000 80 chrIII:9490957-9491037 1.0000 80 chrV:5548652-5548732 1.0000 80 chrX:13527888-13527968 1.0000 80 chrV:12939624-12939704 1.0000 80 chrV:15052542-15052622 1.0000 80 chrII:15037934-15038014 1.0000 80 chrX:10877486-10877566 1.0000 80 chrII:12809878-12809958 1.0000 80 chrV:10255301-10255381 1.0000 80 chrIII:4242607-4242687 1.0000 80 chrIII:1284759-1284839 1.0000 80 chrV:16395311-16395391 1.0000 80 chrV:4042014-4042094 1.0000 80 chrIII:1308347-1308427 1.0000 80 chrV:5131608-5131688 1.0000 80 chrV:16160244-16160324 1.0000 80 chrX:2679771-2679851 1.0000 80 chrIII:8611428-8611508 1.0000 80 chrV:123612-123692 1.0000 80 chrIV:9371302-9371382 1.0000 80 chrV:5087138-5087218 1.0000 80 chrIII:2948452-2948532 1.0000 80 chrI:14491037-14491117 1.0000 80 chrIII:1243401-1243481 1.0000 80 chrII:14754495-14754575 1.0000 80 chrIII:1288834-1288914 1.0000 80 chrV:15816379-15816459 1.0000 80 chrI:12426784-12426864 1.0000 80 chrIII:11139055-11139135 1.0000 80 chrV:10477223-10477303 1.0000 80 chrV:18787570-18787650 1.0000 80 chrIV:11480200-11480280 1.0000 80 chrI:4721071-4721151 1.0000 80 chrV:4042217-4042297 1.0000 80 chrIV:10003526-10003606 1.0000 80 chrV:5587184-5587264 1.0000 80 chrV:10938834-10938914 1.0000 80 chrI:9862723-9862803 1.0000 80 chrI:5377950-5378030 1.0000 80 chrV:4024985-4025065 1.0000 80 chrIII:5260829-5260909 1.0000 80 chrV:5423309-5423389 1.0000 80 chrV:12245944-12246024 1.0000 80 chrV:204102-204182 1.0000 80 chrIV:7165880-7165960 1.0000 80 chrII:7025662-7025742 1.0000 80 chrV:5081090-5081170 1.0000 80 chrIV:9514276-9514356 1.0000 80 chrIII:946526-946606 1.0000 80 chrIII:6857399-6857479 1.0000 80 chrV:4038698-4038778 1.0000 80 chrIV:6550247-6550327 1.0000 80 chrI:4727199-4727279 1.0000 80 chrV:4034455-4034535 1.0000 80 chrV:5587391-5587471 1.0000 80 chrV:16309657-16309737 1.0000 80 chrV:12763440-12763520 1.0000 80 chrIII:9805061-9805141 1.0000 80 chrIII:6357374-6357454 1.0000 80 chrIII:1279376-1279456 1.0000 80 chrI:2333243-2333323 1.0000 80 chrII:8128282-8128362 1.0000 80 chrIV:2711399-2711479 1.0000 80 chrII:12150393-12150473 1.0000 80 chrII:1820038-1820118 1.0000 80 chrV:9373659-9373739 1.0000 80 chrI:316168-316248 1.0000 80 chrV:532152-532232 1.0000 80 chrV:5576161-5576241 1.0000 80 chrX:15796788-15796868 1.0000 80 chrIII:8010513-8010593 1.0000 80 chrX:573455-573535 1.0000 80 chrIII:7238926-7239006 1.0000 80 chrV:19432153-19432233 1.0000 80 chrV:19401617-19401697 1.0000 80 chrII:7392308-7392388 1.0000 80 chrX:14476764-14476844 1.0000 80 chrI:1628724-1628804 1.0000 80 chrX:14945997-14946077 1.0000 80 chrX:15983438-15983518 1.0000 80 chrII:7397544-7397624 1.0000 80 chrV:3644501-3644581 1.0000 80 chrIII:120284-120364 1.0000 80 chrI:12968753-12968833 1.0000 80 chrV:14410095-14410175 1.0000 80 chrII:3062291-3062371 1.0000 80 chrV:6278134-6278214 1.0000 80 chrI:5375565-5375645 1.0000 80 chrV:8939927-8940007 1.0000 80 chrIII:5917464-5917544 1.0000 80 chrX:13349349-13349429 1.0000 80 chrIII:2152480-2152560 1.0000 80 chrV:15880864-15880944 1.0000 80 chrIV:14822316-14822396 1.0000 80 chrIV:10180388-10180468 1.0000 80 chrIII:3874666-3874746 1.0000 80 chrIV:13388939-13389019 1.0000 80 chrIV:1817191-1817271 1.0000 80 chrII:4710249-4710329 1.0000 80 chrV:10940864-10940944 1.0000 80 chrX:10667611-10667691 1.0000 80 chrIV:7754914-7754994 1.0000 80 chrV:6019418-6019498 1.0000 80 chrV:14773171-14773251 1.0000 80 chrV:11119509-11119589 1.0000 80 chrII:12806135-12806215 1.0000 80 chrX:7906659-7906739 1.0000 80 chrX:8083682-8083762 1.0000 80 chrV:10048290-10048370 1.0000 80 chrI:3983042-3983122 1.0000 80 chrI:7091543-7091623 1.0000 80 chrIII:6900930-6901010 1.0000 80 chrIV:14612715-14612795 1.0000 80 chrIII:6888660-6888740 1.0000 80 chrV:13909648-13909728 1.0000 80 chrV:6433922-6434002 1.0000 80 chrI:6061556-6061636 1.0000 80 chrV:6223367-6223447 1.0000 80 chrX:11409782-11409862 1.0000 80 chrI:8508623-8508703 1.0000 80 chrX:15736621-15736701 1.0000 80 chrIII:5940846-5940926 1.0000 80 chrV:13530873-13530953 1.0000 80 chrII:4372424-4372504 1.0000 80 chrX:15036309-15036389 1.0000 80 chrIV:291971-292051 1.0000 80 chrX:8969884-8969964 1.0000 80 chrI:4633403-4633483 1.0000 80 chrV:14362616-14362696 1.0000 80 chrIII:7723945-7724025 1.0000 80 chrIV:9995257-9995337 1.0000 80 chrIII:6375233-6375313 1.0000 80 chrIII:7278657-7278737 1.0000 80 chrX:16930836-16930916 1.0000 80 chrIV:17281046-17281126 1.0000 80 chrX:3362557-3362637 1.0000 80 chrV:12882658-12882738 1.0000 80 chrX:14438014-14438094 1.0000 80 chrI:7090234-7090314 1.0000 80 chrV:6223571-6223651 1.0000 80 chrX:10142131-10142211 1.0000 80 chrX:14478890-14478970 1.0000 80 chrV:19399629-19399709 1.0000 80 chrII:9620167-9620247 1.0000 80 chrIV:11080911-11080991 1.0000 80 chrX:6739275-6739355 1.0000 80 chrIII:5943848-5943928 1.0000 80 chrI:8288745-8288825 1.0000 80 chrIV:11082403-11082483 1.0000 80 chrV:5032272-5032352 1.0000 80 chrX:5713631-5713711 1.0000 80 chrX:8608850-8608930 1.0000 80 chrI:7679196-7679276 1.0000 80 chrII:12542772-12542852 1.0000 80 chrV:13745071-13745151 1.0000 80 chrII:9284060-9284140 1.0000 80 chrX:10051838-10051918 1.0000 80 chrII:14408053-14408133 1.0000 80 chrX:14679183-14679263 1.0000 80 chrII:6413864-6413944 1.0000 80 chrV:727215-727295 1.0000 80 chrV:724093-724173 1.0000 80 chrV:6229181-6229261 1.0000 80 chrX:1888578-1888658 1.0000 80 chrIII:943713-943793 1.0000 80 chrV:20162454-20162534 1.0000 80 chrIII:7974515-7974595 1.0000 80 chrX:10084379-10084459 1.0000 80 chrII:1233214-1233294 1.0000 80 chrIII:6361673-6361753 1.0000 80 chrX:13310843-13310923 1.0000 80 chrX:10901972-10902052 1.0000 80 chrI:7575605-7575685 1.0000 80 chrIII:10844979-10845059 1.0000 80 chrX:11924327-11924407 1.0000 80 chrI:6094396-6094476 1.0000 80 chrIV:14594493-14594573 1.0000 80 chrIII:6148203-6148283 1.0000 80 chrX:13165849-13165929 1.0000 80 chrX:2531477-2531557 1.0000 80 chrI:7739988-7740068 1.0000 80 chrX:7825872-7825952 1.0000 80 chrX:1323150-1323230 1.0000 80 chrV:6098873-6098953 1.0000 80 chrX:4193417-4193497 1.0000 80 chrX:1445748-1445828 1.0000 80 chrX:1909544-1909624 1.0000 80 chrX:6286381-6286461 1.0000 80 chrI:10409738-10409818 1.0000 80 chrV:11344306-11344386 1.0000 80 chrX:8109629-8109709 1.0000 80 chrII:11464593-11464673 1.0000 80 chrII:7945324-7945404 1.0000 80 chrX:15200871-15200951 1.0000 80 chrII:9128347-9128427 1.0000 80 chrIII:8237980-8238060 1.0000 80 chrV:14028303-14028383 1.0000 80 chrV:18710067-18710147 1.0000 80 chrX:7181755-7181835 1.0000 80 chrIV:13254025-13254105 1.0000 80 chrIII:7494815-7494895 1.0000 80 chrX:16378020-16378100 1.0000 80 chrI:15040299-15040379 1.0000 80 chrX:12627910-12627990 1.0000 80 chrI:7662072-7662152 1.0000 80 chrV:20848062-20848142 1.0000 80 chrI:108627-108707 1.0000 80 chrX:13396702-13396782 1.0000 80 chrX:13514545-13514625 1.0000 80 chrI:2587586-2587666 1.0000 80 chrIV:5666139-5666219 1.0000 80 chrX:11522268-11522348 1.0000 80 chrII:9591211-9591291 1.0000 80 chrV:13650180-13650260 1.0000 80 chrI:9320226-9320306 1.0000 80 chrI:14953388-14953468 1.0000 80 chrX:4208656-4208736 1.0000 80 chrX:4246289-4246369 1.0000 80 chrIII:4004106-4004186 1.0000 80 chrIII:12549759-12549839 1.0000 80 chrIV:10502384-10502464 1.0000 80 chrII:12541785-12541865 1.0000 80 chrIII:154309-154389 1.0000 80 chrII:14801392-14801472 1.0000 80 chrX:13528771-13528851 1.0000 80 chrI:5416428-5416508 1.0000 80 chrIV:6481110-6481190 1.0000 80 chrI:11964901-11964981 1.0000 80 chrX:9622700-9622780 1.0000 80 chrIV:3338876-3338956 1.0000 80 chrX:4148569-4148649 1.0000 80 chrX:15607694-15607774 1.0000 80 chrII:7060314-7060394 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_zip-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/zip-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.326 C 0.178 G 0.181 T 0.315 Background letter frequencies (from file dataset with add-one prior applied): A 0.326 C 0.178 G 0.181 T 0.315 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTKCGMAA MEME-1 width = 8 sites = 122 llr = 921 E-value = 8.4e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:34aa pos.-specific C :::8:5:: probability G ::5:7::: matrix T aa42:1:: bits 2.5 2.2 2.0 1.7 * * Relative 1.5 ** ** ** Entropy 1.2 ** ** ** (10.9 bits) 1.0 ** ** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGCGCAA consensus T AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14476764-14476844 28 1.09e-05 GAACCAGAGG TTGCGCAA TTGCACGAAA chrX:573455-573535 49 1.09e-05 GCTGATGTTC TTGCGCAA TAATAGTTAA chrX:10877486-10877566 33 1.09e-05 TTGGATGGTA TTGCGCAA TACTACTCAA chrV:5548652-5548732 44 1.09e-05 TTACGTAAAA TTGCGCAA TATGATAGGA chrIII:5581216-5581296 58 1.09e-05 ATGAGTAAAA TTGCGCAA TGTGATAGAT chrV:699205-699285 36 1.09e-05 CAATCTAATA TTGCGCAA TGTTACACAG chrIV:6209469-6209549 66 1.09e-05 TGTGTGTCTA TTGCGCAA TTCTTTT chrI:4633403-4633483 38 3.00e-05 TTGCGTTAAC TTTCGCAA TCACGAGGCA chrIII:5940846-5940926 49 3.00e-05 TTGGGTAATA TTTCGCAA CTTTCTAGGA chrV:13909648-13909728 55 3.00e-05 ACCTTGAGGA TTTCGCAA TATTTTCCAA chrII:12806135-12806215 57 3.00e-05 TTACGAAAAA TTTCGCAA TTTTCGGCAA chrIII:3874666-3874746 36 3.00e-05 ATGTGAAATG TTTCGCAA TAGTTTCGTA chrIII:2152480-2152560 42 3.00e-05 TTGTGCAAAA TTTCGCAA TTTTTCACCT chrII:7392308-7392388 6 3.00e-05 TTACA TTTCGCAA TCTTTTGCAA chrIII:7238926-7239006 25 3.00e-05 ATTCGCAATA TTTCGCAA TCACTCATCC chrII:1820038-1820118 14 3.00e-05 GGTTTTAAAA TTTCGCAA TATGGCGCCA chrIII:9805061-9805141 23 3.00e-05 TTGTGGAATG TTTCGCAA TGCAATCAAT chrV:12763440-12763520 33 3.00e-05 TAATGCAACA TTTCGCAA TACAACTACT chrV:5081090-5081170 52 3.00e-05 TTAGGAAATA TTTCGCAA CAGTCAAAGG chrV:10938834-10938914 51 3.00e-05 TTGCGGAATA TTTCGCAA TCGGTCAAGA chrIII:2948452-2948532 21 3.00e-05 TTGCCTAATA TTTCGCAA GAATCCCTCC chrIII:8611428-8611508 45 3.00e-05 TTACGGGATA TTTCGCAA TATTAGAAAA chrV:16160244-16160324 11 3.00e-05 TCAGAGACTA TTTCGCAA TATTTCAAAA chrV:4042014-4042094 36 3.00e-05 TGGCGCAATA TTTCGCAA TACATTTGGG chrV:16395311-16395391 55 3.00e-05 TTTCGCAATA TTTCGCAA TTTTATTAAA chrIII:1284759-1284839 27 3.00e-05 ATTGCATATT TTTCGCAA AAGGTTGCGT chrIII:4242607-4242687 39 3.00e-05 GCCCGCCCTT TTTCGCAA TATTTCGCAA chrII:12809878-12809958 31 3.00e-05 TTTTGCAAAA TTTCGCAA TACTTCACAA chrV:5085235-5085315 50 3.00e-05 TTGGAGAGAA TTTCGCAA TAAATCAAAA chrX:15607694-15607774 67 5.00e-05 CAATGTAGTA TTGCGAAA TATTAA chrIII:4004106-4004186 16 5.00e-05 TTGCTGGAAA TTGCGAAA TATTGCAATA chrX:10084379-10084459 15 5.00e-05 TAGATGTTAA TTGCGAAA AAGTCCCACG chrX:16930836-16930916 71 5.00e-05 CGAACAACTA TTGCGAAA TC chrIV:9995257-9995337 49 5.00e-05 TGTTCCTTTT TTGCGAAA GAAATTTCTC chrI:3983042-3983122 58 5.00e-05 ATTCGATTCA TTGCGAAA TCTCTCGTAA chrV:10940864-10940944 51 5.00e-05 CGTGTTCCGA TTGCGAAA TATTGCGCAC chrI:1628724-1628804 39 5.00e-05 TGCCATTTCC TTGCGAAA TATTGCAGAA chrV:4034455-4034535 36 5.00e-05 CAAACAATAA TTGCGAAA TATTCCACCA chrV:4038698-4038778 66 5.00e-05 GCCAACAAAA TTGCGAAA TATTTCA chrII:7025662-7025742 22 5.00e-05 TTGCGCTCCA TTGCGAAA CTAAAACTGC chrV:18787570-18787650 35 5.00e-05 CTCCAAACTA TTGCGAAA TCCTCCACAA chrI:12426784-12426864 48 5.00e-05 TTGAGCAAAA TTGCGAAA TAATTCATTT chrII:14754495-14754575 71 5.00e-05 TTTTCAAAAA TTGCGAAA TT chrI:14491037-14491117 56 5.00e-05 TTTTGAAATA TTGCGAAA TATATATTTT chrIII:9490957-9491037 19 5.00e-05 TATTGCTTAG TTGCGAAA TATTTCAAAA chrV:11042703-11042783 38 5.00e-05 GATTTAGAAA TTGCGAAA TACTTCACAA chrIV:11082403-11082483 28 1.05e-04 TTACGTCACA TTTCGAAA CTAGTGGAAC chrIII:6375233-6375313 35 1.05e-04 ATCTGAACTA TTGCACAA CATTGCATCG chrV:6433922-6434002 60 1.05e-04 TTGCAACATG TTGCACAA TATTCTAATT chrV:14410095-14410175 62 1.05e-04 TCATGTAATA TTTCGAAA CAGTTTATAG chrI:12968753-12968833 59 1.05e-04 TTATTCAATA TTGCACAA CATTTCGAAG chrX:14945997-14946077 4 1.05e-04 AAA TTTCGAAA AAAAAATACA chrIV:7165880-7165960 52 1.05e-04 TTTGGCAACA TTTCGAAA TATAATGTAA chrIII:5260829-5260909 27 1.05e-04 TTTCAAAATG TTGCACAA TTCAATTGAA chrIV:11480200-11480280 33 1.05e-04 CGATGAAATA TTGCACAA TATGATCCCG chrV:5087138-5087218 33 1.05e-04 TTGTGAATTA TTGCACAA CACTGTGTGT chrIV:9371302-9371382 30 1.05e-04 TTTCCTTAAA TTGCACAA CACAATTAGT chrV:123612-123692 22 1.05e-04 TCGAAAAATA TTTCGAAA TTTTACGCAA chrX:2679771-2679851 64 1.05e-04 TTGTGCAACA TTTCGAAA GTTCAACGT chrV:10255301-10255381 27 1.05e-04 TTTGGAAATG TTTCGAAA TGTTCAAGTG chrX:10859268-10859348 73 1.05e-04 TTGGAAAATA TTGCACAA chrV:104128-104208 31 1.05e-04 TTACGAAAAA TTTCGAAA TTTATTATTT chrV:4164730-4164810 43 1.05e-04 TTAAGCAATA TTTCGAAA TGTTTCACCA chrIII:13153151-13153231 40 1.05e-04 TTTTTTATAA TTGCACAA CATTGTGGAA chrI:7090234-7090314 34 1.24e-04 AAAAGTGAGA TTGTGCAA TCGCACGAAA chrV:3644501-3644581 68 1.24e-04 CTACAAACTG TTGTGCAA TAAAT chrV:532152-532232 31 1.24e-04 ACACACAATG TTGTGCAA TAGTGTCTGC chrI:316168-316248 6 1.24e-04 CAATA TTGTGCAA TAAATCTCGG chrI:2333243-2333323 22 1.24e-04 TTTTGCAATG TTGTGCAA TACTTGTACA chrI:4721071-4721151 25 1.24e-04 AAACATAAAG TTGTGCAA TAGTTCACAA chrIII:11139055-11139135 29 1.24e-04 TTATACAATG TTGTGCAA CGCTCCACAA chrV:5131608-5131688 36 1.24e-04 TAACAGAGTG TTGTGCAA TACTACACAA chrV:12939624-12939704 40 1.24e-04 TTACAAAAAG TTGTGCAA TACTAGAGTT chrX:13381502-13381582 43 1.24e-04 TGTGTGAATG TTGTGCAA TATTTTGAAA chrV:9373659-9373739 50 1.43e-04 ATAACGTTTT TTGCGTAA TGTTTCATAA chrI:108627-108707 32 1.78e-04 AGTGAAAATG TTTCACAA AATAGGAGAT chrV:20162454-20162534 26 1.78e-04 gttcgtcttg tttcacaa atttatttaa chrV:5423309-5423389 44 1.78e-04 CTGCGCAACA TTTCACAA TATTACATAT chrIV:11173499-11173579 38 1.78e-04 TGTTGAAACA TTTCACAA TGTGGAGAGA chrI:4727199-4727279 33 1.97e-04 CCGCGTAATA TTACGCAA CGTGTGAGAG chrIII:1288834-1288914 20 2.34e-04 ACGCAATCCT TTGCAAAA AGTATGCAAT chrX:14510520-14510600 13 2.34e-04 TTGGATGCCA TTGCAAAA ATGGGCGCAA chrIII:2076903-2076983 72 2.34e-04 AGTAAAAAAA TTGCAAAA A chrIII:1243401-1243481 41 2.67e-04 TCTTGCCTCG TTTTGCAA TATTGCCAAA chrV:18710067-18710147 69 3.01e-04 TTAGAAACTA TTTCGTAA TTGG chrIII:1279376-1279456 34 3.01e-04 GCAATGCTCA TTTCGTAA CATTTCATAA chrIII:6857399-6857479 51 3.01e-04 TTGTGAAAGA TTTCGTAA AAAGCATTGG chrV:204102-204182 36 3.01e-04 TCACACGAGA TTTCGTAA TTTTTCATAA chrI:9862723-9862803 46 3.01e-04 GGGTGAAATA TTTCGTAA TATTTTATCA chrIII:1308347-1308427 21 3.01e-04 TGTACACATA TTTCGTAA CATTGCATGT chrV:5594202-5594282 9 3.01e-04 AATGTAGA TTTCGTAA AATTAGCCAA chrV:10477223-10477303 38 3.36e-04 TTATGAAATA TTGTGAAA TTTAAATGAA chrI:5486307-5486387 44 3.36e-04 TTTCAAAACA TTGTGAAA AATTACGAAA chrIII:6900930-6901010 66 3.99e-04 ATTGCAACCT TTTCAAAA ATGTGAA chrIII:120284-120364 46 3.99e-04 TTTCAACATA TTTCAAAA TATTGTTTAA chrV:15052542-15052622 29 3.99e-04 TGCTTGCCTA TTTCAAAA TGTGTCACAA chrIII:8237980-8238060 4 4.35e-04 ATG TTACGAAA TAAGATAAGA chrV:15880864-15880944 63 4.35e-04 TTGTAAAATG TTACGAAA TCGTTCTATA chrIV:6550247-6550327 4 4.35e-04 TCA TTACGAAA GTTTGCCCAA chrV:4024985-4025065 52 4.35e-04 AAAAAAAGTA TTACGAAA TATTTCGCCA chrII:15037934-15038014 36 4.35e-04 AAAAAAAATA TTACGAAA TATTCCACCA chrIII:8086175-8086255 37 4.35e-04 ATTCTGTCTA TTACGAAA TATGTCAACA chrII:7945324-7945404 20 4.53e-04 GGACGCATGC TGGCGCAA AGTGTCTTTG chrX:15983438-15983518 69 4.53e-04 AAGATTTTTT TGGCGCAA GGAA chrX:4148569-4148649 28 5.49e-04 GGAAATCGCG TTGTACAA AAATTGAAAC chrI:9320226-9320306 34 5.49e-04 GATGTACTTA TTTTGAAA AAAAATTGTT chrIV:14612715-14612795 61 5.49e-04 agaATGAGTG TTGTACAA ATGTTTTGTG chrX:8083682-8083762 60 5.49e-04 CTCTTTTTTT TTTTGAAA ATGTATTTTT chrV:8939927-8940007 26 5.49e-04 TTTCCTGAAG TTTTGAAA AGATATTCAA chrIII:7494815-7494895 5 5.84e-04 ACAT TTGCATAA TATTACAAAA chrII:14408053-14408133 20 5.84e-04 tcgcataatt ttgcatAA TTTTTTATAA chrI:5377950-5378030 48 5.84e-04 TTACGGTAGA TTGCATAA TGTTTGGCAA chrIII:154309-154389 47 6.20e-04 CGTTATCATA TTACACAA CACTCTATCA chrX:4208656-4208736 67 6.20e-04 ATTAAAATAT TTACACAA GTCTCA chrV:727215-727295 61 6.20e-04 CTATACACTT TTACACAA CAAAGCTACA chrX:4246289-4246369 71 6.50e-04 TCCCCCGTAT TTTCGGAA GA chrX:3362557-3362637 35 6.50e-04 ATGGTTTTTA TTTCGGAA AAAAAAGAAA chrX:13527888-13527968 38 6.84e-04 TTGCTAAGGG TTGTGTAA TGTGACACAA chrI:15040299-15040379 57 7.45e-04 CAAATAAAAA TTTTACAA TGCGTGATCT chrII:6413864-6413944 24 7.45e-04 TCTGTCTCTT TTTTACAA TTTCGTACAA chrIII:6357374-6357454 47 8.52e-04 TTTCATAATC TTTCATAA GAAAAATAAC chrX:1044497-1044577 14 9.51e-04 CATGAAACAT TTGTAAAA CCGAGAGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14476764-14476844 1.1e-05 27_[+1]_45 chrX:573455-573535 1.1e-05 48_[+1]_24 chrX:10877486-10877566 1.1e-05 32_[+1]_40 chrV:5548652-5548732 1.1e-05 43_[+1]_29 chrIII:5581216-5581296 1.1e-05 57_[+1]_15 chrV:699205-699285 1.1e-05 35_[+1]_37 chrIV:6209469-6209549 1.1e-05 65_[+1]_7 chrI:4633403-4633483 3e-05 37_[+1]_35 chrIII:5940846-5940926 3e-05 48_[+1]_24 chrV:13909648-13909728 3e-05 54_[+1]_18 chrII:12806135-12806215 3e-05 56_[+1]_16 chrIII:3874666-3874746 3e-05 35_[+1]_37 chrIII:2152480-2152560 3e-05 41_[+1]_31 chrII:7392308-7392388 3e-05 5_[+1]_67 chrIII:7238926-7239006 3e-05 24_[+1]_48 chrII:1820038-1820118 3e-05 13_[+1]_59 chrIII:9805061-9805141 3e-05 22_[+1]_50 chrV:12763440-12763520 3e-05 32_[+1]_40 chrV:5081090-5081170 3e-05 51_[+1]_21 chrV:10938834-10938914 3e-05 50_[+1]_22 chrIII:2948452-2948532 3e-05 20_[+1]_52 chrIII:8611428-8611508 3e-05 44_[+1]_28 chrV:16160244-16160324 3e-05 10_[+1]_62 chrV:4042014-4042094 3e-05 35_[+1]_37 chrV:16395311-16395391 3e-05 54_[+1]_18 chrIII:1284759-1284839 3e-05 26_[+1]_46 chrIII:4242607-4242687 3e-05 38_[+1]_34 chrII:12809878-12809958 3e-05 30_[+1]_42 chrV:5085235-5085315 3e-05 49_[+1]_23 chrX:15607694-15607774 5e-05 66_[+1]_6 chrIII:4004106-4004186 5e-05 15_[+1]_57 chrX:10084379-10084459 5e-05 14_[+1]_58 chrX:16930836-16930916 5e-05 70_[+1]_2 chrIV:9995257-9995337 5e-05 48_[+1]_24 chrI:3983042-3983122 5e-05 57_[+1]_15 chrV:10940864-10940944 5e-05 50_[+1]_22 chrI:1628724-1628804 5e-05 38_[+1]_34 chrV:4034455-4034535 5e-05 35_[+1]_37 chrV:4038698-4038778 5e-05 65_[+1]_7 chrII:7025662-7025742 5e-05 21_[+1]_51 chrV:18787570-18787650 5e-05 34_[+1]_38 chrI:12426784-12426864 5e-05 47_[+1]_25 chrII:14754495-14754575 5e-05 70_[+1]_2 chrI:14491037-14491117 5e-05 55_[+1]_17 chrIII:9490957-9491037 5e-05 18_[+1]_54 chrV:11042703-11042783 5e-05 37_[+1]_35 chrIV:11082403-11082483 0.0001 27_[+1]_45 chrIII:6375233-6375313 0.0001 34_[+1]_38 chrV:6433922-6434002 0.0001 59_[+1]_13 chrV:14410095-14410175 0.0001 61_[+1]_11 chrI:12968753-12968833 0.0001 58_[+1]_14 chrX:14945997-14946077 0.0001 3_[+1]_69 chrIV:7165880-7165960 0.0001 51_[+1]_21 chrIII:5260829-5260909 0.0001 26_[+1]_46 chrIV:11480200-11480280 0.0001 32_[+1]_40 chrV:5087138-5087218 0.0001 32_[+1]_40 chrIV:9371302-9371382 0.0001 29_[+1]_43 chrV:123612-123692 0.0001 21_[+1]_51 chrX:2679771-2679851 0.0001 63_[+1]_9 chrV:10255301-10255381 0.0001 26_[+1]_46 chrX:10859268-10859348 0.0001 72_[+1] chrV:104128-104208 0.0001 30_[+1]_42 chrV:4164730-4164810 0.0001 42_[+1]_30 chrIII:13153151-13153231 0.0001 39_[+1]_33 chrI:7090234-7090314 0.00012 33_[+1]_39 chrV:3644501-3644581 0.00012 67_[+1]_5 chrV:532152-532232 0.00012 30_[+1]_42 chrI:316168-316248 0.00012 5_[+1]_67 chrI:2333243-2333323 0.00012 21_[+1]_51 chrI:4721071-4721151 0.00012 24_[+1]_48 chrIII:11139055-11139135 0.00012 28_[+1]_44 chrV:5131608-5131688 0.00012 35_[+1]_37 chrV:12939624-12939704 0.00012 39_[+1]_33 chrX:13381502-13381582 0.00012 42_[+1]_30 chrV:9373659-9373739 0.00014 49_[+1]_23 chrI:108627-108707 0.00018 31_[+1]_41 chrV:20162454-20162534 0.00018 25_[+1]_47 chrV:5423309-5423389 0.00018 43_[+1]_29 chrIV:11173499-11173579 0.00018 37_[+1]_35 chrI:4727199-4727279 0.0002 32_[+1]_40 chrIII:1288834-1288914 0.00023 19_[+1]_53 chrX:14510520-14510600 0.00023 12_[+1]_60 chrIII:2076903-2076983 0.00023 71_[+1]_1 chrIII:1243401-1243481 0.00027 40_[+1]_32 chrV:18710067-18710147 0.0003 68_[+1]_4 chrIII:1279376-1279456 0.0003 33_[+1]_39 chrIII:6857399-6857479 0.0003 50_[+1]_22 chrV:204102-204182 0.0003 35_[+1]_37 chrI:9862723-9862803 0.0003 45_[+1]_27 chrIII:1308347-1308427 0.0003 20_[+1]_52 chrV:5594202-5594282 0.0003 8_[+1]_64 chrV:10477223-10477303 0.00034 37_[+1]_35 chrI:5486307-5486387 0.00034 43_[+1]_29 chrIII:6900930-6901010 0.0004 65_[+1]_7 chrIII:120284-120364 0.0004 45_[+1]_27 chrV:15052542-15052622 0.0004 28_[+1]_44 chrIII:8237980-8238060 0.00044 3_[+1]_69 chrV:15880864-15880944 0.00044 62_[+1]_10 chrIV:6550247-6550327 0.00044 3_[+1]_69 chrV:4024985-4025065 0.00044 51_[+1]_21 chrII:15037934-15038014 0.00044 35_[+1]_37 chrIII:8086175-8086255 0.00044 36_[+1]_36 chrII:7945324-7945404 0.00045 19_[+1]_53 chrX:15983438-15983518 0.00045 68_[+1]_4 chrX:4148569-4148649 0.00055 27_[+1]_45 chrI:9320226-9320306 0.00055 33_[+1]_39 chrIV:14612715-14612795 0.00055 60_[+1]_12 chrX:8083682-8083762 0.00055 59_[+1]_13 chrV:8939927-8940007 0.00055 25_[+1]_47 chrIII:7494815-7494895 0.00058 4_[+1]_68 chrII:14408053-14408133 0.00058 19_[+1]_53 chrI:5377950-5378030 0.00058 47_[+1]_25 chrIII:154309-154389 0.00062 46_[+1]_26 chrX:4208656-4208736 0.00062 66_[+1]_6 chrV:727215-727295 0.00062 60_[+1]_12 chrX:4246289-4246369 0.00065 70_[+1]_2 chrX:3362557-3362637 0.00065 34_[+1]_38 chrX:13527888-13527968 0.00068 37_[+1]_35 chrI:15040299-15040379 0.00075 56_[+1]_16 chrII:6413864-6413944 0.00075 23_[+1]_49 chrIII:6357374-6357454 0.00085 46_[+1]_26 chrX:1044497-1044577 0.00095 13_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKCGMAA width=8 seqs=122 chrX:14476764-14476844 ( 28) TTGCGCAA 1 chrX:573455-573535 ( 49) TTGCGCAA 1 chrX:10877486-10877566 ( 33) TTGCGCAA 1 chrV:5548652-5548732 ( 44) TTGCGCAA 1 chrIII:5581216-5581296 ( 58) TTGCGCAA 1 chrV:699205-699285 ( 36) TTGCGCAA 1 chrIV:6209469-6209549 ( 66) TTGCGCAA 1 chrI:4633403-4633483 ( 38) TTTCGCAA 1 chrIII:5940846-5940926 ( 49) TTTCGCAA 1 chrV:13909648-13909728 ( 55) TTTCGCAA 1 chrII:12806135-12806215 ( 57) TTTCGCAA 1 chrIII:3874666-3874746 ( 36) TTTCGCAA 1 chrIII:2152480-2152560 ( 42) TTTCGCAA 1 chrII:7392308-7392388 ( 6) TTTCGCAA 1 chrIII:7238926-7239006 ( 25) TTTCGCAA 1 chrII:1820038-1820118 ( 14) TTTCGCAA 1 chrIII:9805061-9805141 ( 23) TTTCGCAA 1 chrV:12763440-12763520 ( 33) TTTCGCAA 1 chrV:5081090-5081170 ( 52) TTTCGCAA 1 chrV:10938834-10938914 ( 51) TTTCGCAA 1 chrIII:2948452-2948532 ( 21) TTTCGCAA 1 chrIII:8611428-8611508 ( 45) TTTCGCAA 1 chrV:16160244-16160324 ( 11) TTTCGCAA 1 chrV:4042014-4042094 ( 36) TTTCGCAA 1 chrV:16395311-16395391 ( 55) TTTCGCAA 1 chrIII:1284759-1284839 ( 27) TTTCGCAA 1 chrIII:4242607-4242687 ( 39) TTTCGCAA 1 chrII:12809878-12809958 ( 31) TTTCGCAA 1 chrV:5085235-5085315 ( 50) TTTCGCAA 1 chrX:15607694-15607774 ( 67) TTGCGAAA 1 chrIII:4004106-4004186 ( 16) TTGCGAAA 1 chrX:10084379-10084459 ( 15) TTGCGAAA 1 chrX:16930836-16930916 ( 71) TTGCGAAA 1 chrIV:9995257-9995337 ( 49) TTGCGAAA 1 chrI:3983042-3983122 ( 58) TTGCGAAA 1 chrV:10940864-10940944 ( 51) TTGCGAAA 1 chrI:1628724-1628804 ( 39) TTGCGAAA 1 chrV:4034455-4034535 ( 36) TTGCGAAA 1 chrV:4038698-4038778 ( 66) TTGCGAAA 1 chrII:7025662-7025742 ( 22) TTGCGAAA 1 chrV:18787570-18787650 ( 35) TTGCGAAA 1 chrI:12426784-12426864 ( 48) TTGCGAAA 1 chrII:14754495-14754575 ( 71) TTGCGAAA 1 chrI:14491037-14491117 ( 56) TTGCGAAA 1 chrIII:9490957-9491037 ( 19) TTGCGAAA 1 chrV:11042703-11042783 ( 38) TTGCGAAA 1 chrIV:11082403-11082483 ( 28) TTTCGAAA 1 chrIII:6375233-6375313 ( 35) TTGCACAA 1 chrV:6433922-6434002 ( 60) TTGCACAA 1 chrV:14410095-14410175 ( 62) TTTCGAAA 1 chrI:12968753-12968833 ( 59) TTGCACAA 1 chrX:14945997-14946077 ( 4) TTTCGAAA 1 chrIV:7165880-7165960 ( 52) TTTCGAAA 1 chrIII:5260829-5260909 ( 27) TTGCACAA 1 chrIV:11480200-11480280 ( 33) TTGCACAA 1 chrV:5087138-5087218 ( 33) TTGCACAA 1 chrIV:9371302-9371382 ( 30) TTGCACAA 1 chrV:123612-123692 ( 22) TTTCGAAA 1 chrX:2679771-2679851 ( 64) TTTCGAAA 1 chrV:10255301-10255381 ( 27) TTTCGAAA 1 chrX:10859268-10859348 ( 73) TTGCACAA 1 chrV:104128-104208 ( 31) TTTCGAAA 1 chrV:4164730-4164810 ( 43) TTTCGAAA 1 chrIII:13153151-13153231 ( 40) TTGCACAA 1 chrI:7090234-7090314 ( 34) TTGTGCAA 1 chrV:3644501-3644581 ( 68) TTGTGCAA 1 chrV:532152-532232 ( 31) TTGTGCAA 1 chrI:316168-316248 ( 6) TTGTGCAA 1 chrI:2333243-2333323 ( 22) TTGTGCAA 1 chrI:4721071-4721151 ( 25) TTGTGCAA 1 chrIII:11139055-11139135 ( 29) TTGTGCAA 1 chrV:5131608-5131688 ( 36) TTGTGCAA 1 chrV:12939624-12939704 ( 40) TTGTGCAA 1 chrX:13381502-13381582 ( 43) TTGTGCAA 1 chrV:9373659-9373739 ( 50) TTGCGTAA 1 chrI:108627-108707 ( 32) TTTCACAA 1 chrV:20162454-20162534 ( 26) TTTCACAA 1 chrV:5423309-5423389 ( 44) TTTCACAA 1 chrIV:11173499-11173579 ( 38) TTTCACAA 1 chrI:4727199-4727279 ( 33) TTACGCAA 1 chrIII:1288834-1288914 ( 20) TTGCAAAA 1 chrX:14510520-14510600 ( 13) TTGCAAAA 1 chrIII:2076903-2076983 ( 72) TTGCAAAA 1 chrIII:1243401-1243481 ( 41) TTTTGCAA 1 chrV:18710067-18710147 ( 69) TTTCGTAA 1 chrIII:1279376-1279456 ( 34) TTTCGTAA 1 chrIII:6857399-6857479 ( 51) TTTCGTAA 1 chrV:204102-204182 ( 36) TTTCGTAA 1 chrI:9862723-9862803 ( 46) TTTCGTAA 1 chrIII:1308347-1308427 ( 21) TTTCGTAA 1 chrV:5594202-5594282 ( 9) TTTCGTAA 1 chrV:10477223-10477303 ( 38) TTGTGAAA 1 chrI:5486307-5486387 ( 44) TTGTGAAA 1 chrIII:6900930-6901010 ( 66) TTTCAAAA 1 chrIII:120284-120364 ( 46) TTTCAAAA 1 chrV:15052542-15052622 ( 29) TTTCAAAA 1 chrIII:8237980-8238060 ( 4) TTACGAAA 1 chrV:15880864-15880944 ( 63) TTACGAAA 1 chrIV:6550247-6550327 ( 4) TTACGAAA 1 chrV:4024985-4025065 ( 52) TTACGAAA 1 chrII:15037934-15038014 ( 36) TTACGAAA 1 chrIII:8086175-8086255 ( 37) TTACGAAA 1 chrII:7945324-7945404 ( 20) TGGCGCAA 1 chrX:15983438-15983518 ( 69) TGGCGCAA 1 chrX:4148569-4148649 ( 28) TTGTACAA 1 chrI:9320226-9320306 ( 34) TTTTGAAA 1 chrIV:14612715-14612795 ( 61) TTGTACAA 1 chrX:8083682-8083762 ( 60) TTTTGAAA 1 chrV:8939927-8940007 ( 26) TTTTGAAA 1 chrIII:7494815-7494895 ( 5) TTGCATAA 1 chrII:14408053-14408133 ( 20) TTGCATAA 1 chrI:5377950-5378030 ( 48) TTGCATAA 1 chrIII:154309-154389 ( 47) TTACACAA 1 chrX:4208656-4208736 ( 67) TTACACAA 1 chrV:727215-727295 ( 61) TTACACAA 1 chrX:4246289-4246369 ( 71) TTTCGGAA 1 chrX:3362557-3362637 ( 35) TTTCGGAA 1 chrX:13527888-13527968 ( 38) TTGTGTAA 1 chrI:15040299-15040379 ( 57) TTTTACAA 1 chrII:6413864-6413944 ( 24) TTTTACAA 1 chrIII:6357374-6357454 ( 47) TTTCATAA 1 chrX:1044497-1044577 ( 14) TTGTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.50779 E= 8.4e-076 -1357 -1357 -1357 167 -1357 -1357 -347 164 -199 -1357 139 49 -1357 220 -1357 -80 -36 -1357 204 -1357 14 154 -347 -156 162 -1357 -1357 -1357 162 -1357 -1357 -1357 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 122 E= 8.4e-076 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.016393 0.983607 0.081967 0.000000 0.475410 0.442623 0.000000 0.819672 0.000000 0.180328 0.254098 0.000000 0.745902 0.000000 0.360656 0.516393 0.016393 0.106557 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-1 regular expression -------------------------------------------------------------------------------- TT[GT]C[GA][CA]AA -------------------------------------------------------------------------------- Time 5.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CHGCCGSC MEME-2 width = 8 sites = 12 llr = 121 E-value = 5.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CHGCCGSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C a3:8824a probability G ::a3286: matrix T :4:::::: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * **** * Relative 1.5 * ****** Entropy 1.2 * ****** (14.6 bits) 1.0 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel CTGCCGGC consensus A G C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCCGSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12627910-12627990 41 2.93e-06 ATGTATTTAA CTGCCGGC CAGTCTTATC chrX:1909544-1909624 45 7.76e-06 CATGCCGTCC CTGCCGCC TAAACATTAT chrX:1888578-1888658 1 7.76e-06 . CCGCCGCC CCTCTACATA chrX:14476764-14476844 51 7.76e-06 CGAAAAATGT CTGCCGCC TGACTCTCCT chrV:10938834-10938914 19 9.67e-06 CTCACCGCAA CAGCCGCC TTTTTATTCA chrX:14679183-14679263 42 1.27e-05 TCGACCCCTG CTGGCGGC AAAGTTTTTG chrV:18787570-18787650 63 1.46e-05 TATTGGTTTC CAGGCGGC AATTTTTTCG chrII:15037934-15038014 54 1.46e-05 TATTCCACCA CAGGCGGC AAGAATGGGC chrII:7392308-7392388 52 2.04e-05 GGTACCCTGA CCGCCCGC TAGGTTCACA chrIII:4242607-4242687 27 2.04e-05 GGCCTAGACT CCGCCCGC CCTTTTTCGC chrX:15036309-15036389 40 3.21e-05 GTCAATTATA CAGCGGGC AAAAAATGTT chrIV:14594493-14594573 42 3.50e-05 TGTAATTACC CTGCGGCC GATGTTTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCCGSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12627910-12627990 2.9e-06 40_[+2]_32 chrX:1909544-1909624 7.8e-06 44_[+2]_28 chrX:1888578-1888658 7.8e-06 [+2]_72 chrX:14476764-14476844 7.8e-06 50_[+2]_22 chrV:10938834-10938914 9.7e-06 18_[+2]_54 chrX:14679183-14679263 1.3e-05 41_[+2]_31 chrV:18787570-18787650 1.5e-05 62_[+2]_10 chrII:15037934-15038014 1.5e-05 53_[+2]_19 chrII:7392308-7392388 2e-05 51_[+2]_21 chrIII:4242607-4242687 2e-05 26_[+2]_46 chrX:15036309-15036389 3.2e-05 39_[+2]_33 chrIV:14594493-14594573 3.5e-05 41_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCCGSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CHGCCGSC width=8 seqs=12 chrX:12627910-12627990 ( 41) CTGCCGGC 1 chrX:1909544-1909624 ( 45) CTGCCGCC 1 chrX:1888578-1888658 ( 1) CCGCCGCC 1 chrX:14476764-14476844 ( 51) CTGCCGCC 1 chrV:10938834-10938914 ( 19) CAGCCGCC 1 chrX:14679183-14679263 ( 42) CTGGCGGC 1 chrV:18787570-18787650 ( 63) CAGGCGGC 1 chrII:15037934-15038014 ( 54) CAGGCGGC 1 chrII:7392308-7392388 ( 52) CCGCCCGC 1 chrIII:4242607-4242687 ( 27) CCGCCCGC 1 chrX:15036309-15036389 ( 40) CAGCGGGC 1 chrIV:14594493-14594573 ( 42) CTGCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCCGSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6697 E= 5.9e+001 -1023 249 -1023 -1023 3 49 -1023 41 -1023 -1023 246 -1023 -1023 208 46 -1023 -1023 223 -12 -1023 -1023 -9 220 -1023 -1023 123 169 -1023 -1023 249 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCCGSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.9e+001 0.000000 1.000000 0.000000 0.000000 0.333333 0.250000 0.000000 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.416667 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHGCCGSC MEME-2 regular expression -------------------------------------------------------------------------------- C[TAC]G[CG]CG[GC]C -------------------------------------------------------------------------------- Time 10.85 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGCGTC MEME-3 width = 8 sites = 5 llr = 60 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::a::a probability G :::a:a:: matrix T a:a:::a: bits 2.5 * *** * 2.2 * *** * 2.0 * *** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (17.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:11464593-11464673 66 5.77e-06 tgtgtgtgtg tctgcgtC TTGTTTT chrV:14773171-14773251 67 5.77e-06 TGTTTCTCAT TCTGCGTC TCCTTT chrV:532152-532232 44 5.77e-06 TGCAATAGTG TCTGCGTC TCTCTTTTCA chrV:5081090-5081170 22 5.77e-06 TGTGTAGCCG TCTGCGTC TATTCCTTAA chrI:4721071-4721151 62 5.77e-06 ACTCTAATTC TCTGCGTC ATCTTTATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11464593-11464673 5.8e-06 65_[+3]_7 chrV:14773171-14773251 5.8e-06 66_[+3]_6 chrV:532152-532232 5.8e-06 43_[+3]_29 chrV:5081090-5081170 5.8e-06 21_[+3]_51 chrI:4721071-4721151 5.8e-06 61_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGCGTC width=8 seqs=5 chrII:11464593-11464673 ( 66) TCTGCGTC 1 chrV:14773171-14773251 ( 67) TCTGCGTC 1 chrV:532152-532232 ( 44) TCTGCGTC 1 chrV:5081090-5081170 ( 22) TCTGCGTC 1 chrI:4721071-4721151 ( 62) TCTGCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 1.2e+003 -897 -897 -897 167 -897 249 -897 -897 -897 -897 -897 167 -897 -897 246 -897 -897 249 -897 -897 -897 -897 246 -897 -897 -897 -897 167 -897 249 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.2e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 regular expression -------------------------------------------------------------------------------- TCTGCGTC -------------------------------------------------------------------------------- Time 14.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GACGCAGR MEME-4 width = 8 sites = 8 llr = 88 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACGCAGR MEME-4 Description -------------------------------------------------------------------------------- Simplified A :8:::a:5 pos.-specific C ::a:a::: probability G a::a::a5 matrix T :3:::::: bits 2.5 * *** * 2.2 * *** * 2.0 * *** * 1.7 * *** * Relative 1.5 * ***** Entropy 1.2 * ***** (15.8 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GACGCAGA consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15200871-15200951 36 3.61e-06 ACAATGCCTG GACGCAGG ACAAGAATAC chrV:5131608-5131688 13 3.61e-06 AGTGGAAAGA GACGCAGG AGGCATAACA chrI:2587586-2587666 60 1.01e-05 GAAAGAGAGA GACGCAGA CAGCACAAAG chrI:7679196-7679276 29 1.01e-05 AGGATGAAGA GACGCAGA GTGATAGGGG chrV:16309657-16309737 65 1.01e-05 ACTGAGAAGA GACGCAGA CAGTCTGA chrIII:2076903-2076983 42 1.01e-05 TGTGTGAATA GACGCAGA AAGCCAAGAA chrX:14679183-14679263 23 1.36e-05 TAAGCCCAAG GTCGCAGG TTCGACCCCT chrX:8608850-8608930 9 1.36e-05 GAACTCGG GTCGCAGG ATTCAGAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15200871-15200951 3.6e-06 35_[+4]_37 chrV:5131608-5131688 3.6e-06 12_[+4]_60 chrI:2587586-2587666 1e-05 59_[+4]_13 chrI:7679196-7679276 1e-05 28_[+4]_44 chrV:16309657-16309737 1e-05 64_[+4]_8 chrIII:2076903-2076983 1e-05 41_[+4]_31 chrX:14679183-14679263 1.4e-05 22_[+4]_50 chrX:8608850-8608930 1.4e-05 8_[+4]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACGCAGR width=8 seqs=8 chrX:15200871-15200951 ( 36) GACGCAGG 1 chrV:5131608-5131688 ( 13) GACGCAGG 1 chrI:2587586-2587666 ( 60) GACGCAGA 1 chrI:7679196-7679276 ( 29) GACGCAGA 1 chrV:16309657-16309737 ( 65) GACGCAGA 1 chrIII:2076903-2076983 ( 42) GACGCAGA 1 chrX:14679183-14679263 ( 23) GTCGCAGG 1 chrX:8608850-8608930 ( 9) GTCGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 2.1e+003 -965 -965 246 -965 120 -965 -965 -33 -965 249 -965 -965 -965 -965 246 -965 -965 249 -965 -965 161 -965 -965 -965 -965 -965 246 -965 61 -965 146 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+003 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGR MEME-4 regular expression -------------------------------------------------------------------------------- G[AT]CGCAG[AG] -------------------------------------------------------------------------------- Time 17.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKCCCCC MEME-5 width = 8 sites = 7 llr = 77 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKCCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a97aa probability G 9a4::::: matrix T 1:6:13:: bits 2.5 * * ** 2.2 * * ** 2.0 * * ** 1.7 ** ** ** Relative 1.5 ** ***** Entropy 1.2 ** ***** (15.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCCCCC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7392308-7392388 29 1.06e-06 TGCAATAAGT GGGCCCCC GACTGGGTAC chrX:4246289-4246369 59 2.90e-06 GACAACAACC GGTCCCCC GTATTTTCGG chrV:19399629-19399709 68 2.90e-06 CCTCACACAT GGTCCCCC ATTTT chrX:5713631-5713711 19 4.78e-06 GAACAATGGA GGGCCTCC TTAGCTCAGT chrX:15607694-15607774 36 8.04e-06 GAAGAAGGGC GGTCCTCC CTCTAGTCAT chrV:10048290-10048370 47 1.18e-05 AATAGTCACT TGGCCCCC AAGTTGTGCA chrX:16378020-16378100 9 1.82e-05 AGATAAGA GGTCTCCC GATGATGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7392308-7392388 1.1e-06 28_[+5]_44 chrX:4246289-4246369 2.9e-06 58_[+5]_14 chrV:19399629-19399709 2.9e-06 67_[+5]_5 chrX:5713631-5713711 4.8e-06 18_[+5]_54 chrX:15607694-15607774 8e-06 35_[+5]_37 chrV:10048290-10048370 1.2e-05 46_[+5]_26 chrX:16378020-16378100 1.8e-05 8_[+5]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKCCCCC width=8 seqs=7 chrII:7392308-7392388 ( 29) GGGCCCCC 1 chrX:4246289-4246369 ( 59) GGTCCCCC 1 chrV:19399629-19399709 ( 68) GGTCCCCC 1 chrX:5713631-5713711 ( 19) GGGCCTCC 1 chrX:15607694-15607774 ( 36) GGTCCTCC 1 chrV:10048290-10048370 ( 47) TGGCCCCC 1 chrX:16378020-16378100 ( 9) GGTCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.5704 E= 2.2e+003 -945 -945 224 -114 -945 -945 246 -945 -945 -945 124 86 -945 249 -945 -945 -945 227 -945 -114 -945 200 -945 -14 -945 249 -945 -945 -945 249 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.2e+003 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.714286 0.000000 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKCCCCC MEME-5 regular expression -------------------------------------------------------------------------------- GG[TG]CC[CT]CC -------------------------------------------------------------------------------- Time 21.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13153151-13153231 9.89e-03 80 chrX:13381502-13381582 5.77e-02 80 chrIII:8086175-8086255 5.25e-02 80 chrIV:6209469-6209549 4.90e-03 65_[+1(1.09e-05)]_7 chrV:5594202-5594282 5.16e-01 80 chrV:699205-699285 7.24e-02 35_[+1(1.09e-05)]_37 chrI:5486307-5486387 4.59e-01 80 chrV:4164730-4164810 2.85e-01 80 chrIII:2076903-2076983 8.66e-03 41_[+4(1.01e-05)]_31 chrX:1044497-1044577 1.56e-01 80 chrX:14510520-14510600 1.05e-01 80 chrV:104128-104208 7.27e-02 80 chrIII:5581216-5581296 1.50e-01 24_[+1(5.00e-05)]_25_[+1(1.09e-05)]_\ 15 chrV:5085235-5085315 2.38e-02 49_[+1(3.00e-05)]_23 chrV:11042703-11042783 2.98e-01 37_[+1(5.00e-05)]_35 chrX:10859268-10859348 6.40e-02 80 chrIV:11173499-11173579 4.54e-01 80 chrIII:9490957-9491037 3.19e-01 18_[+1(5.00e-05)]_54 chrV:5548652-5548732 7.69e-02 43_[+1(1.09e-05)]_29 chrX:13527888-13527968 2.47e-01 80 chrV:12939624-12939704 3.40e-01 80 chrV:15052542-15052622 2.86e-01 80 chrII:15037934-15038014 8.90e-03 53_[+2(1.46e-05)]_19 chrX:10877486-10877566 1.96e-03 32_[+1(1.09e-05)]_40 chrII:12809878-12809958 5.96e-02 30_[+1(3.00e-05)]_42 chrV:10255301-10255381 3.25e-01 80 chrIII:4242607-4242687 5.34e-04 26_[+2(2.04e-05)]_4_[+1(3.00e-05)]_\ 2_[+1(3.00e-05)]_24 chrIII:1284759-1284839 2.17e-02 26_[+1(3.00e-05)]_46 chrV:16395311-16395391 1.00e-01 44_[+1(3.00e-05)]_2_[+1(3.00e-05)]_\ 18 chrV:4042014-4042094 2.05e-02 35_[+1(3.00e-05)]_37 chrIII:1308347-1308427 4.22e-01 80 chrV:5131608-5131688 2.83e-04 12_[+4(3.61e-06)]_60 chrV:16160244-16160324 9.40e-02 10_[+1(3.00e-05)]_62 chrX:2679771-2679851 3.49e-01 80 chrIII:8611428-8611508 1.44e-01 44_[+1(3.00e-05)]_28 chrV:123612-123692 2.74e-01 80 chrIV:9371302-9371382 4.01e-01 80 chrV:5087138-5087218 9.04e-02 80 chrIII:2948452-2948532 3.75e-02 20_[+1(3.00e-05)]_52 chrI:14491037-14491117 3.20e-01 55_[+1(5.00e-05)]_17 chrIII:1243401-1243481 3.01e-01 80 chrII:14754495-14754575 3.28e-01 70_[+1(5.00e-05)]_2 chrIII:1288834-1288914 1.82e-01 80 chrV:15816379-15816459 3.57e-02 80 chrI:12426784-12426864 1.41e-01 47_[+1(5.00e-05)]_25 chrIII:11139055-11139135 6.97e-02 80 chrV:10477223-10477303 5.65e-01 80 chrV:18787570-18787650 6.91e-04 34_[+1(5.00e-05)]_20_[+2(1.46e-05)]_\ 10 chrIV:11480200-11480280 1.22e-01 80 chrI:4721071-4721151 2.30e-03 61_[+3(5.77e-06)]_11 chrV:4042217-4042297 8.05e-01 80 chrIV:10003526-10003606 4.59e-01 80 chrV:5587184-5587264 9.71e-02 80 chrV:10938834-10938914 7.25e-04 18_[+2(9.67e-06)]_24_[+1(3.00e-05)]_\ 22 chrI:9862723-9862803 4.45e-02 80 chrI:5377950-5378030 5.63e-01 80 chrV:4024985-4025065 5.50e-02 80 chrIII:5260829-5260909 1.50e-01 80 chrV:5423309-5423389 2.56e-01 80 chrV:12245944-12246024 4.00e-01 80 chrV:204102-204182 5.83e-01 80 chrIV:7165880-7165960 5.30e-02 80 chrII:7025662-7025742 2.17e-02 21_[+1(5.00e-05)]_51 chrV:5081090-5081170 1.34e-04 21_[+3(5.77e-06)]_22_[+1(3.00e-05)]_\ 21 chrIV:9514276-9514356 5.54e-01 80 chrIII:946526-946606 2.76e-01 80 chrIII:6857399-6857479 4.47e-01 80 chrV:4038698-4038778 1.64e-01 65_[+1(5.00e-05)]_7 chrIV:6550247-6550327 5.65e-01 80 chrI:4727199-4727279 8.86e-02 80 chrV:4034455-4034535 9.88e-04 35_[+1(5.00e-05)]_37 chrV:5587391-5587471 9.59e-01 80 chrV:16309657-16309737 8.28e-02 64_[+4(1.01e-05)]_8 chrV:12763440-12763520 1.97e-01 32_[+1(3.00e-05)]_40 chrIII:9805061-9805141 2.29e-02 22_[+1(3.00e-05)]_50 chrIII:6357374-6357454 3.57e-01 80 chrIII:1279376-1279456 7.78e-02 80 chrI:2333243-2333323 6.75e-02 80 chrII:8128282-8128362 6.50e-01 80 chrIV:2711399-2711479 8.33e-01 80 chrII:12150393-12150473 2.13e-01 80 chrII:1820038-1820118 8.47e-03 13_[+1(3.00e-05)]_59 chrV:9373659-9373739 7.58e-02 80 chrI:316168-316248 7.76e-02 80 chrV:532152-532232 4.28e-05 [+5(5.10e-05)]_35_[+3(5.77e-06)]_29 chrV:5576161-5576241 7.46e-01 80 chrX:15796788-15796868 3.80e-01 80 chrIII:8010513-8010593 8.21e-01 80 chrX:573455-573535 4.00e-02 27_[+1(3.00e-05)]_13_[+1(1.09e-05)]_\ 24 chrIII:7238926-7239006 1.17e-01 24_[+1(3.00e-05)]_48 chrV:19432153-19432233 5.09e-01 80 chrV:19401617-19401697 5.93e-01 80 chrII:7392308-7392388 1.03e-06 5_[+1(3.00e-05)]_15_[+5(1.06e-06)]_\ 15_[+2(2.04e-05)]_21 chrX:14476764-14476844 6.67e-06 27_[+1(1.09e-05)]_15_[+2(7.76e-06)]_\ 22 chrI:1628724-1628804 1.00e-01 38_[+1(5.00e-05)]_34 chrX:14945997-14946077 1.88e-01 80 chrX:15983438-15983518 1.35e-01 80 chrII:7397544-7397624 6.99e-01 80 chrV:3644501-3644581 4.95e-02 80 chrIII:120284-120364 4.31e-01 80 chrI:12968753-12968833 2.69e-01 80 chrV:14410095-14410175 3.15e-01 80 chrII:3062291-3062371 9.63e-01 80 chrV:6278134-6278214 9.33e-01 80 chrI:5375565-5375645 1.66e-01 80 chrV:8939927-8940007 2.80e-01 80 chrIII:5917464-5917544 8.70e-01 80 chrX:13349349-13349429 8.78e-01 80 chrIII:2152480-2152560 1.58e-01 41_[+1(3.00e-05)]_31 chrV:15880864-15880944 4.72e-01 80 chrIV:14822316-14822396 3.88e-01 80 chrIV:10180388-10180468 4.91e-02 34_[+5(5.10e-05)]_38 chrIII:3874666-3874746 1.30e-01 35_[+1(3.00e-05)]_37 chrIV:13388939-13389019 7.37e-01 80 chrIV:1817191-1817271 8.18e-02 80 chrII:4710249-4710329 7.99e-01 80 chrV:10940864-10940944 1.01e-01 50_[+1(5.00e-05)]_22 chrX:10667611-10667691 9.28e-02 80 chrIV:7754914-7754994 9.93e-01 80 chrV:6019418-6019498 8.13e-02 80 chrV:14773171-14773251 1.72e-02 66_[+3(5.77e-06)]_6 chrV:11119509-11119589 9.77e-01 80 chrII:12806135-12806215 8.14e-02 56_[+1(3.00e-05)]_16 chrX:7906659-7906739 9.00e-01 80 chrX:8083682-8083762 5.27e-01 80 chrV:10048290-10048370 1.18e-02 46_[+5(1.18e-05)]_26 chrI:3983042-3983122 1.52e-02 57_[+1(5.00e-05)]_15 chrI:7091543-7091623 8.75e-01 80 chrIII:6900930-6901010 6.17e-01 80 chrIV:14612715-14612795 5.10e-01 80 chrIII:6888660-6888740 7.36e-01 80 chrV:13909648-13909728 7.63e-02 54_[+1(3.00e-05)]_18 chrV:6433922-6434002 2.07e-01 80 chrI:6061556-6061636 9.99e-01 80 chrV:6223367-6223447 9.67e-01 80 chrX:11409782-11409862 5.90e-01 80 chrI:8508623-8508703 9.90e-01 80 chrX:15736621-15736701 5.72e-01 80 chrIII:5940846-5940926 1.12e-01 48_[+1(3.00e-05)]_24 chrV:13530873-13530953 9.80e-01 80 chrII:4372424-4372504 7.11e-01 80 chrX:15036309-15036389 4.01e-02 39_[+2(3.21e-05)]_33 chrIV:291971-292051 9.99e-01 80 chrX:8969884-8969964 9.57e-01 80 chrI:4633403-4633483 6.70e-02 37_[+1(3.00e-05)]_35 chrV:14362616-14362696 7.24e-01 80 chrIII:7723945-7724025 7.42e-01 80 chrIV:9995257-9995337 1.51e-02 48_[+1(5.00e-05)]_24 chrIII:6375233-6375313 2.37e-01 80 chrIII:7278657-7278737 8.04e-02 80 chrX:16930836-16930916 1.58e-01 70_[+1(5.00e-05)]_2 chrIV:17281046-17281126 1.62e-01 80 chrX:3362557-3362637 4.90e-02 80 chrV:12882658-12882738 7.41e-01 80 chrX:14438014-14438094 7.83e-02 80 chrI:7090234-7090314 1.79e-02 80 chrV:6223571-6223651 9.27e-01 80 chrX:10142131-10142211 1.65e-01 80 chrX:14478890-14478970 8.83e-02 80 chrV:19399629-19399709 2.12e-03 67_[+5(2.90e-06)]_5 chrII:9620167-9620247 9.93e-01 80 chrIV:11080911-11080991 2.82e-01 80 chrX:6739275-6739355 3.91e-01 80 chrIII:5943848-5943928 6.14e-01 80 chrI:8288745-8288825 6.31e-01 80 chrIV:11082403-11082483 3.33e-01 80 chrV:5032272-5032352 9.14e-01 80 chrX:5713631-5713711 2.72e-02 18_[+5(4.78e-06)]_54 chrX:8608850-8608930 1.59e-02 8_[+4(1.36e-05)]_64 chrI:7679196-7679276 6.54e-03 28_[+4(1.01e-05)]_44 chrII:12542772-12542852 6.36e-01 80 chrV:13745071-13745151 9.13e-01 80 chrII:9284060-9284140 6.91e-01 80 chrX:10051838-10051918 6.50e-01 80 chrII:14408053-14408133 3.28e-01 80 chrX:14679183-14679263 2.87e-04 22_[+4(1.36e-05)]_11_[+2(1.27e-05)]_\ 31 chrII:6413864-6413944 2.72e-01 80 chrV:727215-727295 9.26e-03 80 chrV:724093-724173 2.15e-01 80 chrV:6229181-6229261 3.98e-01 80 chrX:1888578-1888658 6.31e-03 [+2(7.76e-06)]_72 chrIII:943713-943793 8.20e-01 80 chrV:20162454-20162534 8.81e-02 80 chrIII:7974515-7974595 8.77e-01 80 chrX:10084379-10084459 1.48e-02 14_[+1(5.00e-05)]_58 chrII:1233214-1233294 8.58e-01 80 chrIII:6361673-6361753 9.75e-01 80 chrX:13310843-13310923 5.80e-01 80 chrX:10901972-10902052 3.98e-01 80 chrI:7575605-7575685 5.11e-01 80 chrIII:10844979-10845059 2.21e-02 80 chrX:11924327-11924407 1.42e-01 80 chrI:6094396-6094476 1.23e-01 80 chrIV:14594493-14594573 6.86e-03 41_[+2(3.50e-05)]_31 chrIII:6148203-6148283 6.09e-01 80 chrX:13165849-13165929 5.07e-01 80 chrX:2531477-2531557 5.34e-01 80 chrI:7739988-7740068 1.59e-01 80 chrX:7825872-7825952 8.80e-01 80 chrX:1323150-1323230 1.32e-01 80 chrV:6098873-6098953 7.45e-01 80 chrX:4193417-4193497 8.60e-01 80 chrX:1445748-1445828 7.74e-01 80 chrX:1909544-1909624 7.27e-03 44_[+2(7.76e-06)]_28 chrX:6286381-6286461 8.40e-01 80 chrI:10409738-10409818 6.26e-01 80 chrV:11344306-11344386 2.21e-01 80 chrX:8109629-8109709 3.51e-01 80 chrII:11464593-11464673 4.72e-03 65_[+3(5.77e-06)]_7 chrII:7945324-7945404 4.98e-03 80 chrX:15200871-15200951 9.86e-03 35_[+4(3.61e-06)]_37 chrII:9128347-9128427 6.95e-01 80 chrIII:8237980-8238060 6.40e-01 80 chrV:14028303-14028383 1.05e-01 80 chrV:18710067-18710147 4.10e-01 80 chrX:7181755-7181835 9.19e-01 80 chrIV:13254025-13254105 9.69e-01 80 chrIII:7494815-7494895 5.48e-01 80 chrX:16378020-16378100 6.78e-03 8_[+5(1.82e-05)]_64 chrI:15040299-15040379 1.46e-01 80 chrX:12627910-12627990 7.71e-03 40_[+2(2.93e-06)]_32 chrI:7662072-7662152 9.23e-01 80 chrV:20848062-20848142 6.20e-01 80 chrI:108627-108707 4.30e-01 80 chrX:13396702-13396782 4.93e-01 80 chrX:13514545-13514625 3.75e-01 80 chrI:2587586-2587666 5.22e-02 59_[+4(1.01e-05)]_13 chrIV:5666139-5666219 4.93e-01 80 chrX:11522268-11522348 1.71e-01 80 chrII:9591211-9591291 3.28e-01 80 chrV:13650180-13650260 7.93e-01 80 chrI:9320226-9320306 3.00e-02 80 chrI:14953388-14953468 9.68e-01 80 chrX:4208656-4208736 6.53e-01 80 chrX:4246289-4246369 5.73e-04 58_[+5(2.90e-06)]_14 chrIII:4004106-4004186 6.13e-02 15_[+1(5.00e-05)]_57 chrIII:12549759-12549839 8.33e-01 80 chrIV:10502384-10502464 9.87e-01 80 chrII:12541785-12541865 7.45e-01 80 chrIII:154309-154389 6.64e-02 80 chrII:14801392-14801472 9.65e-02 80 chrX:13528771-13528851 2.16e-01 80 chrI:5416428-5416508 9.53e-01 80 chrIV:6481110-6481190 3.07e-01 80 chrI:11964901-11964981 6.96e-01 80 chrX:9622700-9622780 9.72e-01 80 chrIV:3338876-3338956 1.97e-01 80 chrX:4148569-4148649 4.89e-01 80 chrX:15607694-15607774 2.73e-04 35_[+5(8.04e-06)]_23_[+1(5.00e-05)]_\ 6 chrII:7060314-7060394 7.15e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************