******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/zim-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:195743-195823 1.0000 80 chrIV:119938-120018 1.0000 80 chrIV:215894-215974 1.0000 80 chrIV:236297-236377 1.0000 80 chrIV:230873-230953 1.0000 80 chrIV:123417-123497 1.0000 80 chrIV:125165-125245 1.0000 80 chrIV:122822-122902 1.0000 80 chrIV:196043-196123 1.0000 80 chrIII:8867992-8868072 1.0000 80 chrIV:234681-234761 1.0000 80 chrIII:13656819-13656899 1.0000 80 chrI:96070-96150 1.0000 80 chrIII:1626773-1626853 1.0000 80 chrIV:237229-237309 1.0000 80 chrIV:196473-196553 1.0000 80 chrV:6222473-6222553 1.0000 80 chrIV:15900300-15900380 1.0000 80 chrX:3554415-3554495 1.0000 80 chrII:7057788-7057868 1.0000 80 chrII:9275301-9275381 1.0000 80 chrIV:10950886-10950966 1.0000 80 chrX:1487268-1487348 1.0000 80 chrIII:10712207-10712287 1.0000 80 chrIV:13392420-13392500 1.0000 80 chrII:7075783-7075863 1.0000 80 chrIV:2610546-2610626 1.0000 80 chrX:1503573-1503653 1.0000 80 chrIII:2424924-2425004 1.0000 80 chrI:8023982-8024062 1.0000 80 chrII:12736793-12736873 1.0000 80 chrIII:4216409-4216489 1.0000 80 chrX:14941882-14941962 1.0000 80 chrII:9889266-9889346 1.0000 80 chrV:19520291-19520371 1.0000 80 chrV:18638478-18638558 1.0000 80 chrV:7774567-7774647 1.0000 80 chrII:15230280-15230360 1.0000 80 chrX:12503553-12503633 1.0000 80 chrI:1225337-1225417 1.0000 80 chrII:7319670-7319750 1.0000 80 chrI:1154109-1154189 1.0000 80 chrI:2254171-2254251 1.0000 80 chrX:7218102-7218182 1.0000 80 chrIII:9773495-9773575 1.0000 80 chrIV:3112285-3112365 1.0000 80 chrV:19050676-19050756 1.0000 80 chrII:6890182-6890262 1.0000 80 chrI:9670452-9670532 1.0000 80 chrI:6755304-6755384 1.0000 80 chrII:5337992-5338072 1.0000 80 chrIV:17471502-17471582 1.0000 80 chrIV:13300294-13300374 1.0000 80 chrIII:12052018-12052098 1.0000 80 chrII:10542811-10542891 1.0000 80 chrI:7601382-7601462 1.0000 80 chrX:16803825-16803905 1.0000 80 chrV:724675-724755 1.0000 80 chrIV:3032144-3032224 1.0000 80 chrX:14808862-14808942 1.0000 80 chrI:8866878-8866958 1.0000 80 chrIV:4698544-4698624 1.0000 80 chrII:8746424-8746504 1.0000 80 chrV:19519652-19519732 1.0000 80 chrII:3835596-3835676 1.0000 80 chrI:14952706-14952786 1.0000 80 chrIII:13411323-13411403 1.0000 80 chrIII:6383853-6383933 1.0000 80 chrX:9561102-9561182 1.0000 80 chrX:14423636-14423716 1.0000 80 chrV:4689388-4689468 1.0000 80 chrI:111320-111400 1.0000 80 chrIV:3871331-3871411 1.0000 80 chrV:18573385-18573465 1.0000 80 chrX:16766719-16766799 1.0000 80 chrII:10543820-10543900 1.0000 80 chrIV:427337-427417 1.0000 80 chrIV:8264252-8264332 1.0000 80 chrII:15123823-15123903 1.0000 80 chrX:3631722-3631802 1.0000 80 chrV:14688212-14688292 1.0000 80 chrIV:2888682-2888762 1.0000 80 chrV:11975804-11975884 1.0000 80 chrII:4458554-4458634 1.0000 80 chrIII:9626702-9626782 1.0000 80 chrV:13783965-13784045 1.0000 80 chrIII:6148719-6148799 1.0000 80 chrIII:13780434-13780514 1.0000 80 chrX:11993485-11993565 1.0000 80 chrV:103232-103312 1.0000 80 chrX:4147738-4147818 1.0000 80 chrV:6277529-6277609 1.0000 80 chrIV:7051579-7051659 1.0000 80 chrII:14032813-14032893 1.0000 80 chrI:12596047-12596127 1.0000 80 chrV:11138-11218 1.0000 80 chrV:20841650-20841730 1.0000 80 chrI:8612389-8612469 1.0000 80 chrIV:10933786-10933866 1.0000 80 chrII:9934739-9934819 1.0000 80 chrV:9744984-9745064 1.0000 80 chrV:13090578-13090658 1.0000 80 chrI:95078-95158 1.0000 80 chrI:5376755-5376835 1.0000 80 chrV:20715569-20715649 1.0000 80 chrIII:8446154-8446234 1.0000 80 chrIII:7733083-7733163 1.0000 80 chrIV:11146189-11146269 1.0000 80 chrI:14103831-14103911 1.0000 80 chrIII:3871831-3871911 1.0000 80 chrIV:6913024-6913104 1.0000 80 chrII:9618756-9618836 1.0000 80 chrI:13657981-13658061 1.0000 80 chrV:15515518-15515598 1.0000 80 chrIII:7737943-7738023 1.0000 80 chrIII:11831293-11831373 1.0000 80 chrIV:17088993-17089073 1.0000 80 chrIV:5375034-5375114 1.0000 80 chrV:5835434-5835514 1.0000 80 chrV:6229273-6229353 1.0000 80 chrIII:9805082-9805162 1.0000 80 chrIV:4460444-4460524 1.0000 80 chrIII:12942516-12942596 1.0000 80 chrII:13152234-13152314 1.0000 80 chrIV:2771259-2771339 1.0000 80 chrV:4516585-4516665 1.0000 80 chrX:1310766-1310846 1.0000 80 chrV:19430501-19430581 1.0000 80 chrII:12336386-12336466 1.0000 80 chrII:2986190-2986270 1.0000 80 chrX:13469560-13469640 1.0000 80 chrIII:9227689-9227769 1.0000 80 chrIII:6442644-6442724 1.0000 80 chrIII:13724612-13724692 1.0000 80 chrI:13953352-13953432 1.0000 80 chrIV:11373996-11374076 1.0000 80 chrI:5654233-5654313 1.0000 80 chrI:6135831-6135911 1.0000 80 chrIII:11921761-11921841 1.0000 80 chrV:12477319-12477399 1.0000 80 chrI:9100917-9100997 1.0000 80 chrV:3694119-3694199 1.0000 80 chrV:3207388-3207468 1.0000 80 chrII:10559849-10559929 1.0000 80 chrV:20847964-20848044 1.0000 80 chrIII:6971378-6971458 1.0000 80 chrX:15076317-15076397 1.0000 80 chrX:13544616-13544696 1.0000 80 chrIV:2710425-2710505 1.0000 80 chrIV:653208-653288 1.0000 80 chrIV:2772453-2772533 1.0000 80 chrV:5667493-5667573 1.0000 80 chrX:986518-986598 1.0000 80 chrIII:4172433-4172513 1.0000 80 chrV:13163636-13163716 1.0000 80 chrIII:5951082-5951162 1.0000 80 chrII:11726835-11726915 1.0000 80 chrX:4146115-4146195 1.0000 80 chrIII:10711295-10711375 1.0000 80 chrX:17611436-17611516 1.0000 80 chrX:13349286-13349366 1.0000 80 chrIII:11833712-11833792 1.0000 80 chrI:7658305-7658385 1.0000 80 chrI:7238240-7238320 1.0000 80 chrII:12058449-12058529 1.0000 80 chrV:7776993-7777073 1.0000 80 chrIII:11694525-11694605 1.0000 80 chrII:8034924-8035004 1.0000 80 chrIV:15931391-15931471 1.0000 80 chrII:5575078-5575158 1.0000 80 chrV:6738816-6738896 1.0000 80 chrV:4653005-4653085 1.0000 80 chrIII:3795212-3795292 1.0000 80 chrV:4823733-4823813 1.0000 80 chrIV:126261-126341 1.0000 80 chrX:3970931-3971011 1.0000 80 chrII:9886252-9886332 1.0000 80 chrIV:1711188-1711268 1.0000 80 chrV:6426988-6427068 1.0000 80 chrI:2377390-2377470 1.0000 80 chrI:7656675-7656755 1.0000 80 chrII:13071384-13071464 1.0000 80 chrV:20840532-20840612 1.0000 80 chrI:7657288-7657368 1.0000 80 chrIV:991301-991381 1.0000 80 chrV:13649984-13650064 1.0000 80 chrIII:8646190-8646270 1.0000 80 chrV:16338532-16338612 1.0000 80 chrII:3933168-3933248 1.0000 80 chrV:4688049-4688129 1.0000 80 chrIII:5230665-5230745 1.0000 80 chrX:14437967-14438047 1.0000 80 chrX:15913164-15913244 1.0000 80 chrV:117554-117634 1.0000 80 chrII:2923459-2923539 1.0000 80 chrIII:5310576-5310656 1.0000 80 chrIV:16168102-16168182 1.0000 80 chrIII:13626402-13626482 1.0000 80 chrII:5353831-5353911 1.0000 80 chrX:7956594-7956674 1.0000 80 chrI:11763981-11764061 1.0000 80 chrIV:16860772-16860852 1.0000 80 chrIV:2655197-2655277 1.0000 80 chrIII:11830620-11830700 1.0000 80 chrIII:13614649-13614729 1.0000 80 chrIV:13323801-13323881 1.0000 80 chrX:8608870-8608950 1.0000 80 chrI:7015773-7015853 1.0000 80 chrI:2878746-2878826 1.0000 80 chrX:1483890-1483970 1.0000 80 chrV:1158412-1158492 1.0000 80 chrII:14237477-14237557 1.0000 80 chrIII:9768080-9768160 1.0000 80 chrIV:15049611-15049691 1.0000 80 chrIII:7495022-7495102 1.0000 80 chrIV:234882-234962 1.0000 80 chrI:9787930-9788010 1.0000 80 chrX:8846666-8846746 1.0000 80 chrIV:12206972-12207052 1.0000 80 chrIV:15932056-15932136 1.0000 80 chrII:4449042-4449122 1.0000 80 chrIII:6168784-6168864 1.0000 80 chrX:8001845-8001925 1.0000 80 chrIII:12428965-12429045 1.0000 80 chrX:14164199-14164279 1.0000 80 chrI:7858301-7858381 1.0000 80 chrIII:11692555-11692635 1.0000 80 chrIV:10934002-10934082 1.0000 80 chrIV:2765238-2765318 1.0000 80 chrI:5377663-5377743 1.0000 80 chrX:4969361-4969441 1.0000 80 chrIV:10573394-10573474 1.0000 80 chrII:5336227-5336307 1.0000 80 chrI:10036449-10036529 1.0000 80 chrIII:10714640-10714720 1.0000 80 chrV:20163274-20163354 1.0000 80 chrX:16930920-16931000 1.0000 80 chrX:13116470-13116550 1.0000 80 chrIV:2802425-2802505 1.0000 80 chrI:6498083-6498163 1.0000 80 chrIII:13546690-13546770 1.0000 80 chrV:18412500-18412580 1.0000 80 chrIII:5273454-5273534 1.0000 80 chrX:2528117-2528197 1.0000 80 chrV:4345782-4345862 1.0000 80 chrII:11691102-11691182 1.0000 80 chrIII:2786895-2786975 1.0000 80 chrI:12964557-12964637 1.0000 80 chrIII:6462658-6462738 1.0000 80 chrIII:8979030-8979110 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_zim-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/zim-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.224 G 0.233 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.224 G 0.233 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTTGAGGC MEME-1 width = 8 sites = 12 llr = 123 E-value = 5.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTGAGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::2:::9 probability G a:18:aa1 matrix T :a9::::: bits 2.2 * ** 1.9 ** *** 1.7 ** **** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTGAGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGAGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:234882-234962 45 1.33e-05 GGATTTTTTG GTTGAGGC TCAGTATTTT chrIII:5230665-5230745 34 1.33e-05 TATAAGCTCT GTTGAGGC AGCGAACTCT chrIV:234681-234761 23 1.33e-05 AGAATTTTTT GTTGAGGC TGAGGATTTT chrIV:122822-122902 30 1.33e-05 CTCGATGTTG GTTGAGGC TCGCGATGTT chrIV:125165-125245 27 1.33e-05 TGGATTTTTG GTTGAGGC TCTCAGGATT chrIV:123417-123497 36 1.33e-05 CTCGATGTTG GTTGAGGC TTTAATTTTG chrIV:236297-236377 41 1.33e-05 TTGATTTTTG GTTGAGGC TCTCTGGATT chrIV:119938-120018 40 1.33e-05 CTCTATTTTG GTTGAGGC TCTCTATTTT chrV:117554-117634 26 2.61e-05 GCCATCAGCT GTTCAGGC GACTTTGATG chrV:4688049-4688129 6 2.61e-05 CAGAA GTTCAGGC GGAGAAGGAA chrII:3933168-3933248 18 3.74e-05 TGTTGCAGCT GTGGAGGC GACTGTGCGA chrII:10543820-10543900 71 5.12e-05 GCATTTTAGA GTTGAGGG GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGAGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:234882-234962 1.3e-05 44_[+1]_28 chrIII:5230665-5230745 1.3e-05 33_[+1]_39 chrIV:234681-234761 1.3e-05 22_[+1]_50 chrIV:122822-122902 1.3e-05 29_[+1]_43 chrIV:125165-125245 1.3e-05 26_[+1]_46 chrIV:123417-123497 1.3e-05 35_[+1]_37 chrIV:236297-236377 1.3e-05 40_[+1]_32 chrIV:119938-120018 1.3e-05 39_[+1]_33 chrV:117554-117634 2.6e-05 25_[+1]_47 chrV:4688049-4688129 2.6e-05 5_[+1]_67 chrII:3933168-3933248 3.7e-05 17_[+1]_55 chrII:10543820-10543900 5.1e-05 70_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGAGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTGAGGC width=8 seqs=12 chrIV:234882-234962 ( 45) GTTGAGGC 1 chrIII:5230665-5230745 ( 34) GTTGAGGC 1 chrIV:234681-234761 ( 23) GTTGAGGC 1 chrIV:122822-122902 ( 30) GTTGAGGC 1 chrIV:125165-125245 ( 27) GTTGAGGC 1 chrIV:123417-123497 ( 36) GTTGAGGC 1 chrIV:236297-236377 ( 41) GTTGAGGC 1 chrIV:119938-120018 ( 40) GTTGAGGC 1 chrV:117554-117634 ( 26) GTTCAGGC 1 chrV:4688049-4688129 ( 6) GTTCAGGC 1 chrII:3933168-3933248 ( 18) GTGGAGGC 1 chrII:10543820-10543900 ( 71) GTTGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGAGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0174 E= 5.7e+001 -1023 -1023 210 -1023 -1023 -1023 -1023 187 -1023 -1023 -148 175 -1023 -43 184 -1023 189 -1023 -1023 -1023 -1023 -1023 210 -1023 -1023 -1023 210 -1023 -1023 203 -148 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGAGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.7e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGAGGC MEME-1 regular expression -------------------------------------------------------------------------------- GTTGAGGC -------------------------------------------------------------------------------- Time 5.21 secs. ******************************************************************************** ******************************************************************************** MOTIF KCTGCTGC MEME-2 width = 8 sites = 24 llr = 204 E-value = 6.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCTGCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:1::::: pos.-specific C 1a::9::9 probability G 3::8::a1 matrix T 5:921a:: bits 2.2 * * 1.9 * * 1.7 * **** 1.5 * **** Relative 1.3 ******* Entropy 1.1 ******* (12.3 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TCTGCTGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTGCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:12964557-12964637 52 1.24e-05 AGAACAAGCG TCTGCTGC TCAAATACTG chrII:13071384-13071464 29 1.24e-05 ATCCGTCATC TCTGCTGC AAGTTCCACA chrII:11726835-11726915 5 1.24e-05 TTCG TCTGCTGC TCGCGCTGCT chrV:12477319-12477399 21 1.24e-05 TCATTCATTT TCTGCTGC TCCGAAAGAG chrV:4345782-4345862 25 2.30e-05 TTGAATGGAG GCTGCTGC TGAGCTGAAT chrIII:9768080-9768160 37 2.30e-05 TGGACCACAA GCTGCTGC AGCACAACAC chrIII:11833712-11833792 57 2.30e-05 tgctgctgga gctgctgc tggcgctcct chrII:13152234-13152314 72 2.30e-05 Tctggtgccg gctgctgc t chrV:11975804-11975884 53 2.30e-05 TGGAAAGTAC GCTGCTGC CCACTCCGAT chrII:2986190-2986270 41 3.32e-05 GCGACAACTC CCTGCTGC AGTCTAGCAG chrX:8001845-8001925 55 4.77e-05 TGGGTGGTCT TCTTCTGC TAAAACGGCG chrIII:6383853-6383933 3 4.77e-05 GT TCTTCTGC ATACCGCTGG chrX:14423636-14423716 15 6.02e-05 TGTCCAGGAT GCTTCTGC TCAATACTAC chrIII:6462658-6462738 47 7.24e-05 TATGAGAAAC ACTGCTGC AGCACGAGCG chrV:19050676-19050756 27 7.24e-05 CACCTGGATG ACTGCTGC GGAGCATGCC chrIV:17471502-17471582 68 8.47e-05 AGCTGATGGC TCAGCTGC GAAAG chrV:6426988-6427068 50 1.08e-04 GTGACGAAAG TCTGCTGG ATCAAGTCCT chrV:15515518-15515598 15 1.31e-04 GAACCGGCGA CCTTCTGC GTGTGAAGCA chrIV:3112285-3112365 5 1.31e-04 CGTG GCTGCTGG TGATGATAGT chrII:3933168-3933248 6 1.46e-04 ATTGA TCTGTTGC AGCTGTGGAG chrX:15076317-15076397 38 1.46e-04 GCATCACTTT TCTGTTGC GATTCGTATC chrV:20847964-20848044 61 1.69e-04 TCGGATTTAT CCAGCTGC ATCGCCTTCA chrX:1487268-1487348 16 2.06e-04 TTCCGGCAAC GCTGCAGC CACTGCAAAG chrX:4147738-4147818 26 2.21e-04 ACCAATCACC TCATCTGC TCTTTTTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTGCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:12964557-12964637 1.2e-05 51_[+2]_21 chrII:13071384-13071464 1.2e-05 28_[+2]_44 chrII:11726835-11726915 1.2e-05 4_[+2]_68 chrV:12477319-12477399 1.2e-05 20_[+2]_52 chrV:4345782-4345862 2.3e-05 24_[+2]_48 chrIII:9768080-9768160 2.3e-05 36_[+2]_36 chrIII:11833712-11833792 2.3e-05 56_[+2]_16 chrII:13152234-13152314 2.3e-05 71_[+2]_1 chrV:11975804-11975884 2.3e-05 52_[+2]_20 chrII:2986190-2986270 3.3e-05 40_[+2]_32 chrX:8001845-8001925 4.8e-05 54_[+2]_18 chrIII:6383853-6383933 4.8e-05 2_[+2]_70 chrX:14423636-14423716 6e-05 14_[+2]_58 chrIII:6462658-6462738 7.2e-05 46_[+2]_26 chrV:19050676-19050756 7.2e-05 26_[+2]_46 chrIV:17471502-17471582 8.5e-05 67_[+2]_5 chrV:6426988-6427068 0.00011 49_[+2]_23 chrV:15515518-15515598 0.00013 14_[+2]_58 chrIV:3112285-3112365 0.00013 4_[+2]_68 chrII:3933168-3933248 0.00015 5_[+2]_67 chrX:15076317-15076397 0.00015 37_[+2]_35 chrV:20847964-20848044 0.00017 60_[+2]_12 chrX:1487268-1487348 0.00021 15_[+2]_57 chrX:4147738-4147818 0.00022 25_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTGCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCTGCTGC width=8 seqs=24 chrI:12964557-12964637 ( 52) TCTGCTGC 1 chrII:13071384-13071464 ( 29) TCTGCTGC 1 chrII:11726835-11726915 ( 5) TCTGCTGC 1 chrV:12477319-12477399 ( 21) TCTGCTGC 1 chrV:4345782-4345862 ( 25) GCTGCTGC 1 chrIII:9768080-9768160 ( 37) GCTGCTGC 1 chrIII:11833712-11833792 ( 57) GCTGCTGC 1 chrII:13152234-13152314 ( 72) GCTGCTGC 1 chrV:11975804-11975884 ( 53) GCTGCTGC 1 chrII:2986190-2986270 ( 41) CCTGCTGC 1 chrX:8001845-8001925 ( 55) TCTTCTGC 1 chrIII:6383853-6383933 ( 3) TCTTCTGC 1 chrX:14423636-14423716 ( 15) GCTTCTGC 1 chrIII:6462658-6462738 ( 47) ACTGCTGC 1 chrV:19050676-19050756 ( 27) ACTGCTGC 1 chrIV:17471502-17471582 ( 68) TCAGCTGC 1 chrV:6426988-6427068 ( 50) TCTGCTGG 1 chrV:15515518-15515598 ( 15) CCTTCTGC 1 chrIV:3112285-3112365 ( 5) GCTGCTGG 1 chrII:3933168-3933248 ( 6) TCTGTTGC 1 chrX:15076317-15076397 ( 38) TCTGTTGC 1 chrV:20847964-20848044 ( 61) CCAGCTGC 1 chrX:1487268-1487348 ( 16) GCTGCAGC 1 chrX:4147738-4147818 ( 26) TCATCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTGCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 6.9e+003 -170 -84 52 75 -1123 216 -1123 -1123 -111 -1123 -1123 168 -1123 -1123 177 -39 -1123 203 -1123 -171 -269 -1123 -1123 181 -1123 -1123 210 -1123 -1123 203 -148 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTGCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 6.9e+003 0.083333 0.125000 0.333333 0.458333 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 0.791667 0.208333 0.000000 0.916667 0.000000 0.083333 0.041667 0.000000 0.000000 0.958333 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTGCTGC MEME-2 regular expression -------------------------------------------------------------------------------- [TG]CT[GT]CTGC -------------------------------------------------------------------------------- Time 9.07 secs. ******************************************************************************** ******************************************************************************** MOTIF CGACCCCC MEME-3 width = 8 sites = 2 llr = 23 E-value = 4.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGACCCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C a::aaaaa probability G :a:::::: matrix T :::::::: bits 2.2 ** ***** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGACCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACCCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10036449-10036529 47 7.95e-06 AATGGGCCCG CGACCCCC GTTTTCCACA chrV:103232-103312 1 7.95e-06 . CGACCCCC GTTTTCACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACCCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10036449-10036529 7.9e-06 46_[+3]_26 chrV:103232-103312 7.9e-06 [+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACCCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGACCCCC width=8 seqs=2 chrI:10036449-10036529 ( 47) CGACCCCC 1 chrV:103232-103312 ( 1) CGACCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACCCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 4.2e+004 -765 215 -765 -765 -765 -765 210 -765 188 -765 -765 -765 -765 215 -765 -765 -765 215 -765 -765 -765 215 -765 -765 -765 215 -765 -765 -765 215 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACCCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACCCCC MEME-3 regular expression -------------------------------------------------------------------------------- CGACCCCC -------------------------------------------------------------------------------- Time 12.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCMACC MEME-4 width = 8 sites = 11 llr = 108 E-value = 6.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCMACC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::5a:: pos.-specific C aa:a5:88 probability G :::::::2 matrix T ::a:::2: bits 2.2 ** * 1.9 **** * 1.7 **** * 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCAACC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCMACC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:7495022-7495102 55 2.05e-05 TGAATACCGA CCTCAACC ATTGCCGCTG chrI:14103831-14103911 55 2.05e-05 AAACTTTGCC CCTCCACC ACAATCGGGA chrIV:196473-196553 41 2.05e-05 ATCCTGGTAG CCTCAACC AAAAATCCTG chrIV:196043-196123 11 2.05e-05 ATATCCTGAG CCTCAACC AAAAATCCTG chrIV:230873-230953 39 2.05e-05 AAAATCTCAG CCTCAACC AAACTCTTTA chrIV:215894-215974 9 2.05e-05 ATTCTCAG CCTCAACC TAAAATTCTC chrIV:195743-195823 3 2.05e-05 AG CCTCAACC AAAAATCCTG chrIV:2765238-2765318 21 4.19e-05 gtctccccct cctccacg ctctctcacc chrX:7218102-7218182 39 4.19e-05 AGCTCCGTGC CCTCCACG TCCACGAGTT chrIV:7051579-7051659 44 6.69e-05 CATTTCAAGT CCTCCATC AATACCAACA chrV:724675-724755 48 6.69e-05 GTGGCAGCGT CCTCCATC AAGTTGTAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCMACC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7495022-7495102 2.1e-05 54_[+4]_18 chrI:14103831-14103911 2.1e-05 54_[+4]_18 chrIV:196473-196553 2.1e-05 40_[+4]_32 chrIV:196043-196123 2.1e-05 10_[+4]_62 chrIV:230873-230953 2.1e-05 38_[+4]_34 chrIV:215894-215974 2.1e-05 8_[+4]_64 chrIV:195743-195823 2.1e-05 2_[+4]_70 chrIV:2765238-2765318 4.2e-05 20_[+4]_52 chrX:7218102-7218182 4.2e-05 38_[+4]_34 chrIV:7051579-7051659 6.7e-05 43_[+4]_29 chrV:724675-724755 6.7e-05 47_[+4]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCMACC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCMACC width=8 seqs=11 chrIII:7495022-7495102 ( 55) CCTCAACC 1 chrI:14103831-14103911 ( 55) CCTCCACC 1 chrIV:196473-196553 ( 41) CCTCAACC 1 chrIV:196043-196123 ( 11) CCTCAACC 1 chrIV:230873-230953 ( 39) CCTCAACC 1 chrIV:215894-215974 ( 9) CCTCAACC 1 chrIV:195743-195823 ( 3) CCTCAACC 1 chrIV:2765238-2765318 ( 21) CCTCCACG 1 chrX:7218102-7218182 ( 39) CCTCCACG 1 chrIV:7051579-7051659 ( 44) CCTCCATC 1 chrV:724675-724755 ( 48) CCTCCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCMACC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 6.8e+004 -1010 216 -1010 -1010 -1010 216 -1010 -1010 -1010 -1010 -1010 187 -1010 216 -1010 -1010 101 102 -1010 -1010 189 -1010 -1010 -1010 -1010 187 -1010 -58 -1010 187 -36 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCMACC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.454545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.818182 0.181818 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCMACC MEME-4 regular expression -------------------------------------------------------------------------------- CCTC[AC]ACC -------------------------------------------------------------------------------- Time 16.59 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCAACC MEME-5 width = 8 sites = 6 llr = 65 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCAACC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2:::aa:: pos.-specific C 8a:a::aa probability G :::::::: matrix T ::a::::: bits 2.2 * * ** 1.9 ******* 1.7 ******* 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCAACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCAACC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:196473-196553 19 1.12e-05 AAATCCTTAG CCTCAACC AAAAATCCTG chrIV:196043-196123 55 1.12e-05 ATCCTGGTAG CCTCAACC AAAAATCCTG chrIV:230873-230953 58 1.12e-05 AACTCTTTAG CCTCAACC AAATTCTCAG chrIV:215894-215974 69 1.12e-05 AAATCCTCAG CCTCAACC AAAA chrIV:195743-195823 43 1.12e-05 AAATCCTTAG CCTCAACC AAAAATCCTT chrI:13953352-13953432 46 2.48e-05 TAGTTGTATG ACTCAACC GAAGGCGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCAACC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:196473-196553 1.1e-05 18_[+5]_54 chrIV:196043-196123 1.1e-05 54_[+5]_18 chrIV:230873-230953 1.1e-05 57_[+5]_15 chrIV:215894-215974 1.1e-05 68_[+5]_4 chrIV:195743-195823 1.1e-05 42_[+5]_30 chrI:13953352-13953432 2.5e-05 45_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCAACC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCAACC width=8 seqs=6 chrIV:196473-196553 ( 19) CCTCAACC 1 chrIV:196043-196123 ( 55) CCTCAACC 1 chrIV:230873-230953 ( 58) CCTCAACC 1 chrIV:215894-215974 ( 69) CCTCAACC 1 chrIV:195743-195823 ( 43) CCTCAACC 1 chrI:13953352-13953432 ( 46) ACTCAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCAACC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 2.6e+004 -70 189 -923 -923 -923 216 -923 -923 -923 -923 -923 187 -923 216 -923 -923 189 -923 -923 -923 189 -923 -923 -923 -923 216 -923 -923 -923 216 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCAACC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.6e+004 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCAACC MEME-5 regular expression -------------------------------------------------------------------------------- CCTCAACC -------------------------------------------------------------------------------- Time 20.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:195743-195823 1.31e-03 2_[+5(1.12e-05)]_12_[+4(6.69e-05)]_\ 12_[+5(1.12e-05)]_12_[+5(1.12e-05)]_10 chrIV:119938-120018 1.34e-01 1_[+1(1.33e-05)]_11_[+1(1.33e-05)]_\ 11_[+1(1.33e-05)]_11_[+1(1.33e-05)]_14 chrIV:215894-215974 1.11e-03 8_[+5(1.12e-05)]_12_[+5(1.12e-05)]_\ 12_[+4(6.69e-05)]_12_[+5(1.12e-05)]_4 chrIV:236297-236377 1.49e-01 18_[+1(1.33e-05)]_14_[+1(1.33e-05)]_\ 32 chrIV:230873-230953 7.82e-05 38_[+5(1.12e-05)]_11_[+5(1.12e-05)]_\ 15 chrIV:123417-123497 9.40e-02 16_[+1(1.33e-05)]_11_[+1(1.33e-05)]_\ 10_[+1(1.33e-05)]_19 chrIV:125165-125245 1.19e-01 4_[+1(1.33e-05)]_14_[+1(1.33e-05)]_\ 14_[+1(1.33e-05)]_24 chrIV:122822-122902 9.40e-02 10_[+1(1.33e-05)]_11_[+1(1.33e-05)]_\ 11_[+1(1.33e-05)]_10_[+1(1.33e-05)]_6 chrIV:196043-196123 1.76e-03 10_[+5(1.12e-05)]_14_[+5(1.12e-05)]_\ 14_[+5(1.12e-05)]_18 chrIII:8867992-8868072 3.07e-01 80 chrIV:234681-234761 1.51e-01 2_[+1(1.33e-05)]_12_[+1(1.33e-05)]_\ 12_[+1(1.33e-05)]_30 chrIII:13656819-13656899 1.23e-01 80 chrI:96070-96150 8.69e-01 80 chrIII:1626773-1626853 9.62e-01 80 chrIV:237229-237309 2.18e-01 80 chrIV:196473-196553 1.31e-03 18_[+5(1.12e-05)]_14_[+5(1.12e-05)]_\ 12_[+4(6.69e-05)]_12 chrV:6222473-6222553 8.58e-01 80 chrIV:15900300-15900380 1.96e-01 80 chrX:3554415-3554495 9.28e-01 80 chrII:7057788-7057868 6.46e-01 80 chrII:9275301-9275381 9.65e-01 80 chrIV:10950886-10950966 9.40e-01 80 chrX:1487268-1487348 1.40e-01 80 chrIII:10712207-10712287 6.00e-01 80 chrIV:13392420-13392500 2.39e-02 80 chrII:7075783-7075863 6.93e-01 80 chrIV:2610546-2610626 2.48e-01 80 chrX:1503573-1503653 5.91e-01 80 chrIII:2424924-2425004 8.88e-01 80 chrI:8023982-8024062 9.13e-01 80 chrII:12736793-12736873 9.60e-02 80 chrIII:4216409-4216489 3.09e-02 80 chrX:14941882-14941962 1.09e-01 80 chrII:9889266-9889346 1.49e-01 80 chrV:19520291-19520371 4.22e-01 80 chrV:18638478-18638558 4.74e-01 80 chrV:7774567-7774647 6.31e-02 80 chrII:15230280-15230360 2.11e-02 80 chrX:12503553-12503633 9.96e-01 80 chrI:1225337-1225417 8.00e-01 80 chrII:7319670-7319750 7.77e-01 80 chrI:1154109-1154189 8.97e-02 80 chrI:2254171-2254251 6.50e-01 80 chrX:7218102-7218182 2.85e-02 38_[+4(4.19e-05)]_34 chrIII:9773495-9773575 1.00e-01 80 chrIV:3112285-3112365 1.44e-01 80 chrV:19050676-19050756 9.24e-02 26_[+2(7.24e-05)]_46 chrII:6890182-6890262 5.71e-01 80 chrI:9670452-9670532 1.71e-01 80 chrI:6755304-6755384 3.98e-01 80 chrII:5337992-5338072 7.72e-01 80 chrIV:17471502-17471582 9.93e-02 67_[+2(8.47e-05)]_5 chrIV:13300294-13300374 6.55e-02 80 chrIII:12052018-12052098 1.86e-01 80 chrII:10542811-10542891 8.29e-01 80 chrI:7601382-7601462 4.06e-01 80 chrX:16803825-16803905 2.16e-01 80 chrV:724675-724755 1.06e-02 47_[+4(6.69e-05)]_25 chrIV:3032144-3032224 3.44e-01 80 chrX:14808862-14808942 9.96e-01 80 chrI:8866878-8866958 6.53e-01 80 chrIV:4698544-4698624 9.53e-01 80 chrII:8746424-8746504 9.60e-01 80 chrV:19519652-19519732 4.55e-01 80 chrII:3835596-3835676 6.04e-01 80 chrI:14952706-14952786 9.75e-01 80 chrIII:13411323-13411403 2.31e-01 80 chrIII:6383853-6383933 1.71e-01 2_[+2(4.77e-05)]_70 chrX:9561102-9561182 3.85e-01 80 chrX:14423636-14423716 1.05e-01 14_[+2(6.02e-05)]_58 chrV:4689388-4689468 6.81e-01 80 chrI:111320-111400 8.90e-01 80 chrIV:3871331-3871411 2.04e-01 80 chrV:18573385-18573465 9.54e-01 80 chrX:16766719-16766799 9.58e-01 80 chrII:10543820-10543900 1.42e-01 70_[+1(5.12e-05)]_2 chrIV:427337-427417 4.78e-01 80 chrIV:8264252-8264332 8.59e-02 80 chrII:15123823-15123903 9.97e-01 80 chrX:3631722-3631802 9.16e-01 80 chrV:14688212-14688292 6.58e-02 80 chrIV:2888682-2888762 3.71e-01 80 chrV:11975804-11975884 2.62e-02 52_[+2(2.30e-05)]_20 chrII:4458554-4458634 6.28e-01 80 chrIII:9626702-9626782 7.28e-02 80 chrV:13783965-13784045 9.99e-01 80 chrIII:6148719-6148799 4.49e-01 80 chrIII:13780434-13780514 4.79e-01 80 chrX:11993485-11993565 8.82e-02 80 chrV:103232-103312 3.62e-02 [+3(7.95e-06)]_72 chrX:4147738-4147818 6.03e-02 80 chrV:6277529-6277609 6.89e-01 80 chrIV:7051579-7051659 4.34e-02 43_[+4(6.69e-05)]_29 chrII:14032813-14032893 9.60e-01 80 chrI:12596047-12596127 2.24e-01 80 chrV:11138-11218 1.47e-01 80 chrV:20841650-20841730 2.71e-01 58_[+1(9.85e-05)]_14 chrI:8612389-8612469 6.63e-01 80 chrIV:10933786-10933866 4.45e-01 80 chrII:9934739-9934819 9.55e-01 80 chrV:9744984-9745064 4.97e-01 80 chrV:13090578-13090658 6.65e-01 80 chrI:95078-95158 9.63e-01 80 chrI:5376755-5376835 9.92e-01 80 chrV:20715569-20715649 9.13e-01 80 chrIII:8446154-8446234 9.79e-01 80 chrIII:7733083-7733163 6.61e-01 80 chrIV:11146189-11146269 2.60e-01 80 chrI:14103831-14103911 1.14e-03 54_[+4(2.05e-05)]_18 chrIII:3871831-3871911 6.53e-03 80 chrIV:6913024-6913104 9.88e-01 80 chrII:9618756-9618836 3.93e-01 80 chrI:13657981-13658061 1.00e+00 80 chrV:15515518-15515598 6.72e-02 80 chrIII:7737943-7738023 1.00e+00 80 chrIII:11831293-11831373 9.26e-01 80 chrIV:17088993-17089073 9.92e-01 80 chrIV:5375034-5375114 5.46e-01 80 chrV:5835434-5835514 1.73e-01 80 chrV:6229273-6229353 6.91e-01 80 chrIII:9805082-9805162 9.61e-01 80 chrIV:4460444-4460524 6.40e-01 80 chrIII:12942516-12942596 1.24e-01 80 chrII:13152234-13152314 1.98e-02 71_[+2(2.30e-05)]_1 chrIV:2771259-2771339 9.23e-01 80 chrV:4516585-4516665 9.97e-01 80 chrX:1310766-1310846 3.62e-01 80 chrV:19430501-19430581 9.68e-01 80 chrII:12336386-12336466 9.97e-01 80 chrII:2986190-2986270 1.13e-02 40_[+2(3.32e-05)]_32 chrX:13469560-13469640 9.95e-01 80 chrIII:9227689-9227769 8.56e-01 80 chrIII:6442644-6442724 9.95e-01 80 chrIII:13724612-13724692 7.56e-01 80 chrI:13953352-13953432 1.64e-02 45_[+5(2.48e-05)]_27 chrIV:11373996-11374076 6.03e-01 80 chrI:5654233-5654313 8.03e-01 80 chrI:6135831-6135911 6.43e-01 80 chrIII:11921761-11921841 5.25e-01 80 chrV:12477319-12477399 2.63e-03 20_[+2(1.24e-05)]_52 chrI:9100917-9100997 9.66e-01 80 chrV:3694119-3694199 1.66e-01 80 chrV:3207388-3207468 1.88e-02 80 chrII:10559849-10559929 9.94e-01 80 chrV:20847964-20848044 2.05e-01 80 chrIII:6971378-6971458 5.31e-02 80 chrX:15076317-15076397 4.79e-01 80 chrX:13544616-13544696 9.28e-01 80 chrIV:2710425-2710505 4.50e-01 80 chrIV:653208-653288 2.95e-01 80 chrIV:2772453-2772533 1.00e+00 80 chrV:5667493-5667573 9.37e-01 80 chrX:986518-986598 4.14e-01 80 chrIII:4172433-4172513 9.55e-01 80 chrV:13163636-13163716 5.72e-01 80 chrIII:5951082-5951162 7.31e-01 80 chrII:11726835-11726915 4.40e-03 4_[+2(1.24e-05)]_68 chrX:4146115-4146195 2.68e-01 80 chrIII:10711295-10711375 8.46e-01 80 chrX:17611436-17611516 9.69e-01 80 chrX:13349286-13349366 1.00e+00 80 chrIII:11833712-11833792 7.02e-02 44_[+2(2.30e-05)]_4_[+2(2.30e-05)]_\ 16 chrI:7658305-7658385 9.56e-01 80 chrI:7238240-7238320 6.20e-01 80 chrII:12058449-12058529 5.49e-01 80 chrV:7776993-7777073 6.06e-01 80 chrIII:11694525-11694605 6.39e-01 80 chrII:8034924-8035004 4.49e-01 80 chrIV:15931391-15931471 6.99e-01 80 chrII:5575078-5575158 9.97e-01 80 chrV:6738816-6738896 7.30e-01 80 chrV:4653005-4653085 7.64e-01 80 chrIII:3795212-3795292 1.70e-01 80 chrV:4823733-4823813 9.96e-01 80 chrIV:126261-126341 9.98e-01 80 chrX:3970931-3971011 8.80e-01 80 chrII:9886252-9886332 7.83e-01 80 chrIV:1711188-1711268 7.49e-01 80 chrV:6426988-6427068 1.67e-01 80 chrI:2377390-2377470 7.05e-01 80 chrI:7656675-7656755 1.00e+00 80 chrII:13071384-13071464 3.53e-02 28_[+2(1.24e-05)]_44 chrV:20840532-20840612 8.85e-01 80 chrI:7657288-7657368 5.82e-01 80 chrIV:991301-991381 8.27e-01 80 chrV:13649984-13650064 5.84e-01 80 chrIII:8646190-8646270 5.22e-01 80 chrV:16338532-16338612 6.98e-01 80 chrII:3933168-3933248 2.12e-02 17_[+1(3.74e-05)]_55 chrV:4688049-4688129 7.75e-02 5_[+1(2.61e-05)]_67 chrIII:5230665-5230745 5.96e-02 33_[+1(1.33e-05)]_39 chrX:14437967-14438047 5.46e-01 80 chrX:15913164-15913244 6.42e-01 80 chrV:117554-117634 2.87e-03 25_[+1(2.61e-05)]_47 chrII:2923459-2923539 8.27e-01 80 chrIII:5310576-5310656 2.94e-01 80 chrIV:16168102-16168182 1.91e-01 80 chrIII:13626402-13626482 1.44e-01 80 chrII:5353831-5353911 5.37e-01 80 chrX:7956594-7956674 2.29e-01 80 chrI:11763981-11764061 9.35e-01 80 chrIV:16860772-16860852 8.91e-03 80 chrIV:2655197-2655277 3.45e-01 80 chrIII:11830620-11830700 5.47e-01 80 chrIII:13614649-13614729 9.17e-01 80 chrIV:13323801-13323881 2.71e-01 80 chrX:8608870-8608950 7.52e-01 80 chrI:7015773-7015853 3.38e-01 80 chrI:2878746-2878826 9.32e-01 80 chrX:1483890-1483970 6.70e-01 80 chrV:1158412-1158492 3.76e-03 7_[+3(5.56e-05)]_65 chrII:14237477-14237557 5.30e-01 80 chrIII:9768080-9768160 1.03e-02 36_[+2(2.30e-05)]_25_[+2(2.30e-05)]_\ 3 chrIV:15049611-15049691 8.55e-01 80 chrIII:7495022-7495102 1.88e-04 54_[+5(1.12e-05)]_18 chrIV:234882-234962 1.38e-01 44_[+1(1.33e-05)]_28 chrI:9787930-9788010 4.29e-01 80 chrX:8846666-8846746 9.87e-01 80 chrIV:12206972-12207052 6.00e-01 80 chrIV:15932056-15932136 8.02e-01 80 chrII:4449042-4449122 3.61e-01 80 chrIII:6168784-6168864 9.97e-01 80 chrX:8001845-8001925 2.04e-01 54_[+2(4.77e-05)]_18 chrIII:12428965-12429045 9.94e-01 80 chrX:14164199-14164279 7.55e-01 80 chrI:7858301-7858381 9.05e-01 80 chrIII:11692555-11692635 4.73e-01 80 chrIV:10934002-10934082 6.90e-01 80 chrIV:2765238-2765318 1.01e-02 20_[+4(4.19e-05)]_52 chrI:5377663-5377743 6.28e-01 80 chrX:4969361-4969441 9.57e-01 80 chrIV:10573394-10573474 4.40e-01 80 chrII:5336227-5336307 4.42e-02 80 chrI:10036449-10036529 4.87e-03 46_[+3(7.95e-06)]_26 chrIII:10714640-10714720 5.69e-01 80 chrV:20163274-20163354 8.51e-01 80 chrX:16930920-16931000 2.67e-01 80 chrX:13116470-13116550 9.02e-01 80 chrIV:2802425-2802505 9.49e-01 80 chrI:6498083-6498163 9.36e-01 80 chrIII:13546690-13546770 1.04e-02 80 chrV:18412500-18412580 2.79e-01 80 chrIII:5273454-5273534 1.00e+00 80 chrX:2528117-2528197 3.31e-01 80 chrV:4345782-4345862 6.50e-03 24_[+2(2.30e-05)]_48 chrII:11691102-11691182 2.70e-01 80 chrIII:2786895-2786975 7.07e-01 80 chrI:12964557-12964637 8.32e-02 51_[+2(1.24e-05)]_21 chrIII:6462658-6462738 1.20e-01 46_[+2(7.24e-05)]_26 chrIII:8979030-8979110 1.00e+00 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************