******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/zfp-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:5272-5352 1.0000 80 chrM:3301-3381 1.0000 80 chrM:8170-8250 1.0000 80 chrI:12903650-12903730 1.0000 80 chrM:10182-10262 1.0000 80 chrIV:1709903-1709983 1.0000 80 chrM:5970-6050 1.0000 80 chrIII:7189881-7189961 1.0000 80 chrIV:10129137-10129217 1.0000 80 chrM:3609-3689 1.0000 80 chrIII:7573035-7573115 1.0000 80 chrI:4769649-4769729 1.0000 80 chrII:1157315-1157395 1.0000 80 chrIV:3313453-3313533 1.0000 80 chrII:10658895-10658975 1.0000 80 chrI:4647215-4647295 1.0000 80 chrIII:7179807-7179887 1.0000 80 chrM:10945-11025 1.0000 80 chrM:9095-9175 1.0000 80 chrM:8417-8497 1.0000 80 chrI:3037938-3038018 1.0000 80 chrM:7205-7285 1.0000 80 chrV:15590377-15590457 1.0000 80 chrII:1315422-1315502 1.0000 80 chrIII:13466357-13466437 1.0000 80 chrII:7105117-7105197 1.0000 80 chrM:4593-4673 1.0000 80 chrIII:3068066-3068146 1.0000 80 chrI:12968596-12968676 1.0000 80 chrII:3523683-3523763 1.0000 80 chrIII:62495-62575 1.0000 80 chrX:14437869-14437949 1.0000 80 chrM:2156-2236 1.0000 80 chrIII:7208046-7208126 1.0000 80 chrIII:1420002-1420082 1.0000 80 chrIII:1418849-1418929 1.0000 80 chrI:852201-852281 1.0000 80 chrII:1531450-1531530 1.0000 80 chrII:1075736-1075816 1.0000 80 chrM:2360-2440 1.0000 80 chrV:12967967-12968047 1.0000 80 chrX:15535424-15535504 1.0000 80 chrIV:14033206-14033286 1.0000 80 chrII:4048137-4048217 1.0000 80 chrM:6170-6250 1.0000 80 chrV:2600689-2600769 1.0000 80 chrX:4145656-4145736 1.0000 80 chrIII:2528776-2528856 1.0000 80 chrIII:7181988-7182068 1.0000 80 chrX:9024430-9024510 1.0000 80 chrIV:11149743-11149823 1.0000 80 chrIII:7184214-7184294 1.0000 80 chrIV:10481805-10481885 1.0000 80 chrIII:2101038-2101118 1.0000 80 chrV:6559753-6559833 1.0000 80 chrV:7196621-7196701 1.0000 80 chrII:11980281-11980361 1.0000 80 chrIII:1080720-1080800 1.0000 80 chrIV:16656390-16656470 1.0000 80 chrM:1187-1267 1.0000 80 chrIII:8164038-8164118 1.0000 80 chrII:1344570-1344650 1.0000 80 chrII:8569478-8569558 1.0000 80 chrI:12995760-12995840 1.0000 80 chrIII:9456279-9456359 1.0000 80 chrII:7337648-7337728 1.0000 80 chrIV:4450080-4450160 1.0000 80 chrM:12386-12466 1.0000 80 chrI:382476-382556 1.0000 80 chrII:14349638-14349718 1.0000 80 chrIII:6888697-6888777 1.0000 80 chrIII:7162481-7162561 1.0000 80 chrIII:5706392-5706472 1.0000 80 chrII:4044509-4044589 1.0000 80 chrX:6841009-6841089 1.0000 80 chrII:11874841-11874921 1.0000 80 chrIV:16845524-16845604 1.0000 80 chrI:4789996-4790076 1.0000 80 chrIV:11147125-11147205 1.0000 80 chrIII:4754321-4754401 1.0000 80 chrIII:11936156-11936236 1.0000 80 chrI:8808093-8808173 1.0000 80 chrV:8235491-8235571 1.0000 80 chrII:6489918-6489998 1.0000 80 chrI:9422344-9422424 1.0000 80 chrIV:4468124-4468204 1.0000 80 chrIII:10407443-10407523 1.0000 80 chrX:14162153-14162233 1.0000 80 chrII:12541738-12541818 1.0000 80 chrIII:7336331-7336411 1.0000 80 chrM:4805-4885 1.0000 80 chrI:2928166-2928246 1.0000 80 chrIV:16389261-16389341 1.0000 80 chrM:9298-9378 1.0000 80 chrI:4139413-4139493 1.0000 80 chrI:11611424-11611504 1.0000 80 chrI:3266714-3266794 1.0000 80 chrIV:4727989-4728069 1.0000 80 chrI:8813433-8813513 1.0000 80 chrX:5984728-5984808 1.0000 80 chrIII:8797351-8797431 1.0000 80 chrV:17858049-17858129 1.0000 80 chrX:8650655-8650735 1.0000 80 chrI:7578900-7578980 1.0000 80 chrV:5684693-5684773 1.0000 80 chrIII:12978959-12979039 1.0000 80 chrIV:2657521-2657601 1.0000 80 chrIV:15931992-15932072 1.0000 80 chrV:14347360-14347440 1.0000 80 chrI:13324208-13324288 1.0000 80 chrX:7181788-7181868 1.0000 80 chrX:11603453-11603533 1.0000 80 chrI:5843051-5843131 1.0000 80 chrII:5714974-5715054 1.0000 80 chrI:15034074-15034154 1.0000 80 chrI:10553909-10553989 1.0000 80 chrIV:4728188-4728268 1.0000 80 chrIV:7320051-7320131 1.0000 80 chrI:8816537-8816617 1.0000 80 chrIV:4445859-4445939 1.0000 80 chrX:7794535-7794615 1.0000 80 chrX:2531445-2531525 1.0000 80 chrI:1842040-1842120 1.0000 80 chrIII:12598615-12598695 1.0000 80 chrX:2364891-2364971 1.0000 80 chrIII:12615268-12615348 1.0000 80 chrX:6867876-6867956 1.0000 80 chrI:12665015-12665095 1.0000 80 chrI:378824-378904 1.0000 80 chrV:19142795-19142875 1.0000 80 chrX:2598931-2599011 1.0000 80 chrX:13730326-13730406 1.0000 80 chrV:10965639-10965719 1.0000 80 chrX:8971627-8971707 1.0000 80 chrI:7021434-7021514 1.0000 80 chrV:7237246-7237326 1.0000 80 chrV:3391179-3391259 1.0000 80 chrV:12968167-12968247 1.0000 80 chrIV:796809-796889 1.0000 80 chrX:2527967-2528047 1.0000 80 chrV:10353182-10353262 1.0000 80 chrX:16202298-16202378 1.0000 80 chrV:9980973-9981053 1.0000 80 chrI:8748022-8748102 1.0000 80 chrV:7728301-7728381 1.0000 80 chrV:10579111-10579191 1.0000 80 chrV:9318216-9318296 1.0000 80 chrIV:7084935-7085015 1.0000 80 chrX:17544459-17544539 1.0000 80 chrI:315206-315286 1.0000 80 chrV:16965802-16965882 1.0000 80 chrIV:4748507-4748587 1.0000 80 chrIV:16399236-16399316 1.0000 80 chrX:13653760-13653840 1.0000 80 chrIII:11792800-11792880 1.0000 80 chrIII:7278654-7278734 1.0000 80 chrIII:3505325-3505405 1.0000 80 chrI:14756791-14756871 1.0000 80 chrIII:3249152-3249232 1.0000 80 chrI:4584831-4584911 1.0000 80 chrII:13872655-13872735 1.0000 80 chrIV:4390624-4390704 1.0000 80 chrIII:7973339-7973419 1.0000 80 chrIII:13463072-13463152 1.0000 80 chrIII:12399919-12399999 1.0000 80 chrI:9688831-9688911 1.0000 80 chrII:11620100-11620180 1.0000 80 chrV:11532334-11532414 1.0000 80 chrI:5429883-5429963 1.0000 80 chrI:6835326-6835406 1.0000 80 chrIII:8130525-8130605 1.0000 80 chrX:15040902-15040982 1.0000 80 chrIV:16776088-16776168 1.0000 80 chrX:2242957-2243037 1.0000 80 chrIV:6321871-6321951 1.0000 80 chrX:4190703-4190783 1.0000 80 chrX:1389554-1389634 1.0000 80 chrIV:6919509-6919589 1.0000 80 chrV:11078517-11078597 1.0000 80 chrI:11978802-11978882 1.0000 80 chrI:8615173-8615253 1.0000 80 chrI:2996329-2996409 1.0000 80 chrI:12654799-12654879 1.0000 80 chrV:8606445-8606525 1.0000 80 chrI:2929695-2929775 1.0000 80 chrX:5729093-5729173 1.0000 80 chrI:9163479-9163559 1.0000 80 chrII:5181797-5181877 1.0000 80 chrIV:6336842-6336922 1.0000 80 chrIV:6376730-6376810 1.0000 80 chrI:5870708-5870788 1.0000 80 chrIII:10742621-10742701 1.0000 80 chrI:3822692-3822772 1.0000 80 chrIV:13395347-13395427 1.0000 80 chrIII:10214535-10214615 1.0000 80 chrIII:8307515-8307595 1.0000 80 chrX:2237590-2237670 1.0000 80 chrIV:4093257-4093337 1.0000 80 chrI:535402-535482 1.0000 80 chrIV:11179309-11179389 1.0000 80 chrI:10178391-10178471 1.0000 80 chrIV:11593624-11593704 1.0000 80 chrX:16604774-16604854 1.0000 80 chrIII:12351460-12351540 1.0000 80 chrIII:13464660-13464740 1.0000 80 chrX:4395591-4395671 1.0000 80 chrII:10851176-10851256 1.0000 80 chrII:156071-156151 1.0000 80 chrI:6799621-6799701 1.0000 80 chrIV:11956442-11956522 1.0000 80 chrI:3987190-3987270 1.0000 80 chrI:8786908-8786988 1.0000 80 chrV:9789956-9790036 1.0000 80 chrV:10715926-10716006 1.0000 80 chrIV:16491786-16491866 1.0000 80 chrII:13976358-13976438 1.0000 80 chrII:411009-411089 1.0000 80 chrI:3516411-3516491 1.0000 80 chrII:14063254-14063334 1.0000 80 chrI:6780227-6780307 1.0000 80 chrIV:14767866-14767946 1.0000 80 chrX:6220039-6220119 1.0000 80 chrI:13756534-13756614 1.0000 80 chrX:6737701-6737781 1.0000 80 chrIII:1424448-1424528 1.0000 80 chrI:8808292-8808372 1.0000 80 chrIII:10845010-10845090 1.0000 80 chrI:8426810-8426890 1.0000 80 chrIV:6790623-6790703 1.0000 80 chrX:10435737-10435817 1.0000 80 chrI:110687-110767 1.0000 80 chrIV:14825114-14825194 1.0000 80 chrX:13514576-13514656 1.0000 80 chrIV:14464243-14464323 1.0000 80 chrIII:8874348-8874428 1.0000 80 chrV:14351153-14351233 1.0000 80 chrIII:9443630-9443710 1.0000 80 chrI:12652224-12652304 1.0000 80 chrI:13337261-13337341 1.0000 80 chrI:9268948-9269028 1.0000 80 chrI:9665176-9665256 1.0000 80 chrIV:7791303-7791383 1.0000 80 chrIV:8687926-8688006 1.0000 80 chrI:8245557-8245637 1.0000 80 chrIII:9546143-9546223 1.0000 80 chrIII:6551756-6551836 1.0000 80 chrV:8228962-8229042 1.0000 80 chrII:8787539-8787619 1.0000 80 chrIV:4725527-4725607 1.0000 80 chrX:6744013-6744093 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_zfp-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/zfp-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.256 C 0.237 G 0.242 T 0.266 Background letter frequencies (from file dataset with add-one prior applied): A 0.255 C 0.237 G 0.242 T 0.266 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGACSCR MEME-1 width = 8 sites = 33 llr = 303 E-value = 1.4e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACSCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9:a:1:6 pos.-specific C :1::a5a: probability G a:a::4:4 matrix T :::::1:: bits 2.1 * * * * 1.9 * *** * 1.7 * *** * 1.5 ***** * Relative 1.2 ***** * Entropy 1.0 ***** ** (13.2 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGACCCA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACSCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:11956442-11956522 47 1.29e-05 TCAACGATTA GAGACCCA CGTGGGTGAG chrV:5684693-5684773 51 1.29e-05 TCTTCCCTGC GAGACCCA AGGGAGGGGA chrI:11611424-11611504 57 1.29e-05 TCGTCGTTGC GAGACCCA CCACTCGTAT chrIII:5706392-5706472 48 1.29e-05 TCTTCTGTGT GAGACCCA TAGGGGTCAC chrI:12903650-12903730 32 1.29e-05 GAATCGTGGC GAGACCCA CAAAAACCTA chrI:8786908-8786988 64 2.61e-05 GTGAGACATA GAGACGCA GACAATCAG chrII:10851176-10851256 72 2.61e-05 CAGGACGTGT GAGACGCA G chrX:2237590-2237670 21 2.61e-05 ACGGCTAGTA GAGACGCA GATAGAAAAG chrIV:13395347-13395427 31 2.61e-05 TCCCCGCGTC GAGACGCA GAGGCGTCAC chrII:13872655-13872735 21 2.61e-05 ACAAAACGAG GAGACGCA GAGTTGGGTC chrV:16965802-16965882 45 2.61e-05 GGGAAAGGTG GAGACGCA GACGAGAAAG chrI:8813433-8813513 9 2.61e-05 CAAACGTG GAGACGCA GACGATTGTA chrI:9422344-9422424 6 2.61e-05 GTGAA GAGACGCA GACATATGTC chrII:10658895-10658975 8 2.61e-05 CCAAAAA GAGACGCA GACAGTGGAC chrI:1842040-1842120 38 3.84e-05 ATATCGTGAC GAGACCCG TCCACTCTGC chrI:10553909-10553989 26 3.84e-05 AGCACGTGGC GAGACCCG ACCTCGCAGC chrIV:15931992-15932072 60 3.84e-05 tgtcacatgc gagacccg ggttcaattc chrIII:7336331-7336411 50 3.84e-05 TTTTCGCGGC GAGACCCG CCACTCTTTT chrIII:10407443-10407523 3 3.84e-05 gc gagacccg ttgactttcg chrI:8808093-8808173 64 3.84e-05 AAAACAAATT GAGACCCG AAGAACTCG chrI:4789996-4790076 47 3.84e-05 TTTTCGTGGC GAGACCCG CCGCAGGACA chrII:11874841-11874921 53 3.84e-05 CGTTCGCTGC GAGACCCG ACGCTCTTAG chrIII:1080720-1080800 54 3.84e-05 CTGTCGTGGT GAGACCCG ATGGCGCGAA chrIII:1418849-1418929 34 3.84e-05 CGAGCGTGGC GAGACCCG CTGCGTCCCT chrIII:4754321-4754401 53 5.09e-05 TCGCACGGAA GAGACGCG TGTGTAGATT chrIV:14464243-14464323 69 6.48e-05 TCGCACGGAA GAGACACA GGGA chrI:13756534-13756614 5 6.48e-05 GCGA GAGACACA GAGACTTGCT chrII:11620100-11620180 33 6.48e-05 CGTTTCACTA GAGACACA GACAGTAAGA chrV:8606445-8606525 18 1.05e-04 CAATCGCTTC GAGACTCA GGGGGCAGTG chrIII:7973339-7973419 3 1.05e-04 GC GAGACTCA AAGTCTGTCG chrIV:7791303-7791383 62 1.17e-04 TTCAATAAAC GCGACGCA GCTGCTCGCG chrV:7196621-7196701 7 1.17e-04 GTGACC GCGACGCA GGGTAAACGC chrIII:12598615-12598695 18 1.54e-04 TCGCGGTCGT GCGACGCG TGCAGCAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACSCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:11956442-11956522 1.3e-05 46_[+1]_26 chrV:5684693-5684773 1.3e-05 50_[+1]_22 chrI:11611424-11611504 1.3e-05 56_[+1]_16 chrIII:5706392-5706472 1.3e-05 47_[+1]_25 chrI:12903650-12903730 1.3e-05 31_[+1]_41 chrI:8786908-8786988 2.6e-05 63_[+1]_9 chrII:10851176-10851256 2.6e-05 71_[+1]_1 chrX:2237590-2237670 2.6e-05 20_[+1]_52 chrIV:13395347-13395427 2.6e-05 30_[+1]_42 chrII:13872655-13872735 2.6e-05 20_[+1]_52 chrV:16965802-16965882 2.6e-05 44_[+1]_28 chrI:8813433-8813513 2.6e-05 8_[+1]_64 chrI:9422344-9422424 2.6e-05 5_[+1]_67 chrII:10658895-10658975 2.6e-05 7_[+1]_65 chrI:1842040-1842120 3.8e-05 37_[+1]_35 chrI:10553909-10553989 3.8e-05 25_[+1]_47 chrIV:15931992-15932072 3.8e-05 59_[+1]_13 chrIII:7336331-7336411 3.8e-05 49_[+1]_23 chrIII:10407443-10407523 3.8e-05 2_[+1]_70 chrI:8808093-8808173 3.8e-05 63_[+1]_9 chrI:4789996-4790076 3.8e-05 46_[+1]_26 chrII:11874841-11874921 3.8e-05 52_[+1]_20 chrIII:1080720-1080800 3.8e-05 53_[+1]_19 chrIII:1418849-1418929 3.8e-05 33_[+1]_39 chrIII:4754321-4754401 5.1e-05 52_[+1]_20 chrIV:14464243-14464323 6.5e-05 68_[+1]_4 chrI:13756534-13756614 6.5e-05 4_[+1]_68 chrII:11620100-11620180 6.5e-05 32_[+1]_40 chrV:8606445-8606525 0.0001 17_[+1]_55 chrIII:7973339-7973419 0.0001 2_[+1]_70 chrIV:7791303-7791383 0.00012 61_[+1]_11 chrV:7196621-7196701 0.00012 6_[+1]_66 chrIII:12598615-12598695 0.00015 17_[+1]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACSCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACSCR width=8 seqs=33 chrIV:11956442-11956522 ( 47) GAGACCCA 1 chrV:5684693-5684773 ( 51) GAGACCCA 1 chrI:11611424-11611504 ( 57) GAGACCCA 1 chrIII:5706392-5706472 ( 48) GAGACCCA 1 chrI:12903650-12903730 ( 32) GAGACCCA 1 chrI:8786908-8786988 ( 64) GAGACGCA 1 chrII:10851176-10851256 ( 72) GAGACGCA 1 chrX:2237590-2237670 ( 21) GAGACGCA 1 chrIV:13395347-13395427 ( 31) GAGACGCA 1 chrII:13872655-13872735 ( 21) GAGACGCA 1 chrV:16965802-16965882 ( 45) GAGACGCA 1 chrI:8813433-8813513 ( 9) GAGACGCA 1 chrI:9422344-9422424 ( 6) GAGACGCA 1 chrII:10658895-10658975 ( 8) GAGACGCA 1 chrI:1842040-1842120 ( 38) GAGACCCG 1 chrI:10553909-10553989 ( 26) GAGACCCG 1 chrIV:15931992-15932072 ( 60) GAGACCCG 1 chrIII:7336331-7336411 ( 50) GAGACCCG 1 chrIII:10407443-10407523 ( 3) GAGACCCG 1 chrI:8808093-8808173 ( 64) GAGACCCG 1 chrI:4789996-4790076 ( 47) GAGACCCG 1 chrII:11874841-11874921 ( 53) GAGACCCG 1 chrIII:1080720-1080800 ( 54) GAGACCCG 1 chrIII:1418849-1418929 ( 34) GAGACCCG 1 chrIII:4754321-4754401 ( 53) GAGACGCG 1 chrIV:14464243-14464323 ( 69) GAGACACA 1 chrI:13756534-13756614 ( 5) GAGACACA 1 chrII:11620100-11620180 ( 33) GAGACACA 1 chrV:8606445-8606525 ( 18) GAGACTCA 1 chrIII:7973339-7973419 ( 3) GAGACTCA 1 chrIV:7791303-7791383 ( 62) GCGACGCA 1 chrV:7196621-7196701 ( 7) GCGACGCA 1 chrIII:12598615-12598695 ( 18) GCGACGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACSCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.14407 E= 1.4e-013 -1169 -1169 205 -1169 183 -138 -1169 -1169 -1169 -1169 205 -1169 197 -1169 -1169 -1169 -1169 208 -1169 -1169 -149 94 70 -213 -1169 208 -1169 -1169 132 -1169 59 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACSCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.4e-013 0.000000 0.000000 1.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.454545 0.393939 0.060606 0.000000 1.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACSCR MEME-1 regular expression -------------------------------------------------------------------------------- GAGAC[CG]C[AG] -------------------------------------------------------------------------------- Time 7.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGTCTCG MEME-2 width = 8 sites = 25 llr = 239 E-value = 1.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGTCTCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :4::a:a: probability G a6a::2:8 matrix T :::a:8:2 bits 2.1 * * * * 1.9 * *** * 1.7 * *** * 1.5 * *** ** Relative 1.2 * ****** Entropy 1.0 ******** (13.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTCTCG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTCTCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:13337261-13337341 5 1.36e-05 TGGT GGGTCTCG TCGCGAAAAC chrI:110687-110767 43 1.36e-05 AAGCCTCCTC GGGTCTCG GCACGACAAC chrX:2237590-2237670 72 1.36e-05 GCCGTACGAC GGGTCTCG C chrIII:3505325-3505405 19 1.36e-05 GAGGTTCGAT GGGTCTCG CCACGATACG chrI:7021434-7021514 70 1.36e-05 TCCGCCCAAT GGGTCTCG CAC chrIII:12978959-12979039 14 1.36e-05 CCGTGGTGAT GGGTCTCG CCGCGAAATT chrI:3266714-3266794 69 1.36e-05 TCCCGCGCGC GGGTCTCG CAAC chrI:2928166-2928246 12 1.36e-05 CCGGTGCGAC GGGTCTCG CCGCGAAAGT chrI:382476-382556 41 1.36e-05 CATGCGGCAT GGGTCTCG CCACGACCGA chrIII:2528776-2528856 26 1.36e-05 GAGATGCCGC GGGTCTCG CAGGGAAGAG chrIII:7208046-7208126 53 1.36e-05 AGTCAGACGC GGGTCTCG CCGCGACGAG chrI:4647215-4647295 42 1.36e-05 TCCAACGTCG GGGTCTCG CCGCGATGAG chrII:10658895-10658975 26 1.36e-05 GACAGTGGAC GGGTCTCG CAGCGACAAG chrIV:10129137-10129217 68 1.36e-05 ATTTAGTGAT GGGTCTCG GCACG chrIV:14767866-14767946 23 2.70e-05 TGCATACTCT GCGTCTCG TCTTTTTGCA chrV:8606445-8606525 45 5.15e-05 GCTGTTCGGT GCGTCGCG GTTCGCGCGC chrIII:12598615-12598695 5 5.15e-05 AGAC GCGTCGCG GTCGTGCGAC chrIII:7162481-7162561 4 5.15e-05 GTC GCGTCGCG GTCGTCTAGT chrIV:16656390-16656470 2 5.15e-05 C GCGTCGCG GTCGATTCTG chrV:7196621-7196701 23 5.15e-05 CAGGGTAAAC GCGTCGCG TGTCTGCGTA chrV:2600689-2600769 47 5.15e-05 ATGCAAAAGT GCGTCGCG GTGTTTGCGT chrV:8235491-8235571 66 6.65e-05 TCGGATTCCT GGGTCTCT TCAAGAG chrI:1842040-1842120 54 8.12e-05 CGTCCACTCT GCGTCTCT CGCCGTCGCG chrIII:10407443-10407523 68 8.12e-05 TGAGTGTCGC GCGTCTCT CACGG chrIII:7184214-7184294 8 8.12e-05 GTTCTCT GCGTCTCT GAGTTACATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTCTCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13337261-13337341 1.4e-05 4_[+2]_68 chrI:110687-110767 1.4e-05 42_[+2]_30 chrX:2237590-2237670 1.4e-05 71_[+2]_1 chrIII:3505325-3505405 1.4e-05 18_[+2]_54 chrI:7021434-7021514 1.4e-05 69_[+2]_3 chrIII:12978959-12979039 1.4e-05 13_[+2]_59 chrI:3266714-3266794 1.4e-05 68_[+2]_4 chrI:2928166-2928246 1.4e-05 11_[+2]_61 chrI:382476-382556 1.4e-05 40_[+2]_32 chrIII:2528776-2528856 1.4e-05 25_[+2]_47 chrIII:7208046-7208126 1.4e-05 52_[+2]_20 chrI:4647215-4647295 1.4e-05 41_[+2]_31 chrII:10658895-10658975 1.4e-05 25_[+2]_47 chrIV:10129137-10129217 1.4e-05 67_[+2]_5 chrIV:14767866-14767946 2.7e-05 22_[+2]_50 chrV:8606445-8606525 5.2e-05 44_[+2]_28 chrIII:12598615-12598695 5.2e-05 4_[+2]_68 chrIII:7162481-7162561 5.2e-05 3_[+2]_69 chrIV:16656390-16656470 5.2e-05 1_[+2]_71 chrV:7196621-7196701 5.2e-05 22_[+2]_50 chrV:2600689-2600769 5.2e-05 46_[+2]_26 chrV:8235491-8235571 6.7e-05 65_[+2]_7 chrI:1842040-1842120 8.1e-05 53_[+2]_19 chrIII:10407443-10407523 8.1e-05 67_[+2]_5 chrIII:7184214-7184294 8.1e-05 7_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTCTCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGTCTCG width=8 seqs=25 chrI:13337261-13337341 ( 5) GGGTCTCG 1 chrI:110687-110767 ( 43) GGGTCTCG 1 chrX:2237590-2237670 ( 72) GGGTCTCG 1 chrIII:3505325-3505405 ( 19) GGGTCTCG 1 chrI:7021434-7021514 ( 70) GGGTCTCG 1 chrIII:12978959-12979039 ( 14) GGGTCTCG 1 chrI:3266714-3266794 ( 69) GGGTCTCG 1 chrI:2928166-2928246 ( 12) GGGTCTCG 1 chrI:382476-382556 ( 41) GGGTCTCG 1 chrIII:2528776-2528856 ( 26) GGGTCTCG 1 chrIII:7208046-7208126 ( 53) GGGTCTCG 1 chrI:4647215-4647295 ( 42) GGGTCTCG 1 chrII:10658895-10658975 ( 26) GGGTCTCG 1 chrIV:10129137-10129217 ( 68) GGGTCTCG 1 chrIV:14767866-14767946 ( 23) GCGTCTCG 1 chrV:8606445-8606525 ( 45) GCGTCGCG 1 chrIII:12598615-12598695 ( 5) GCGTCGCG 1 chrIII:7162481-7162561 ( 4) GCGTCGCG 1 chrIV:16656390-16656470 ( 2) GCGTCGCG 1 chrV:7196621-7196701 ( 23) GCGTCGCG 1 chrV:2600689-2600769 ( 47) GCGTCGCG 1 chrV:8235491-8235571 ( 66) GGGTCTCT 1 chrI:1842040-1842120 ( 54) GCGTCTCT 1 chrIII:10407443-10407523 ( 68) GCGTCTCT 1 chrIII:7184214-7184294 ( 8) GCGTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTCTCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 1.9e-008 -1129 -1129 205 -1129 -1129 76 131 -1129 -1129 -1129 205 -1129 -1129 -1129 -1129 191 -1129 208 -1129 -1129 -1129 -1129 -1 152 -1129 208 -1129 -1129 -1129 -1129 179 -73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTCTCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.9e-008 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.240000 0.760000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.840000 0.160000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTCTCG MEME-2 regular expression -------------------------------------------------------------------------------- G[GC]GTC[TG]CG -------------------------------------------------------------------------------- Time 11.61 secs. ******************************************************************************** ******************************************************************************** MOTIF TVGMGCGC MEME-3 width = 8 sites = 41 llr = 334 E-value = 8.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TVGMGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 13:4:::: pos.-specific C 13:6:a:a probability G 23a:a:a: matrix T 51:::::: bits 2.1 * **** 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.2 * **** Entropy 1.0 ****** (11.8 bits) 0.8 ****** 0.6 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel TAGCGCGC consensus C A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVGMGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10715926-10716006 19 1.19e-05 CGCGCTCGTC TCGCGCGC ACGTGACCGG chrV:8606445-8606525 55 1.19e-05 GCGTCGCGGT TCGCGCGC GTCTCCCGTT chrV:11078517-11078597 33 1.19e-05 AGGCGTGGCT TCGCGCGC TAATTCAAAT chrX:15040902-15040982 64 1.19e-05 TTGGCTGCCC TCGCGCGC GCGCGCGTA chrI:15034074-15034154 52 1.19e-05 AATTTGTTTT TCGCGCGC TCTCCTCCTA chrI:4789996-4790076 21 1.19e-05 TCGGTTCAAA TCGCGCGC CGGTCGCGTT chrV:10579111-10579191 37 3.68e-05 CGACGTCCAC TGGCGCGC TTTTGGTGTT chrII:7337648-7337728 70 4.96e-05 AAAGAACATT TCGAGCGC GTG chrI:3516411-3516491 10 7.65e-05 ATTGTGCGG TAGAGCGC GAATGCGTTT chrII:411009-411089 20 7.65e-05 GCTTTTTCAA TAGAGCGC GAATGCTTGC chrI:10178391-10178471 38 7.65e-05 AGATTTGCGA TGGAGCGC GTTTGCACTT chrI:2996329-2996409 55 7.65e-05 GAATTCTCAA TGGAGCGC GGTTGCGTTA chrI:5429883-5429963 66 7.65e-05 GTCAGTTCAG TAGAGCGC ATTTGGT chrV:16965802-16965882 69 7.65e-05 AAAGGTGCAG TGGAGCGC GCTT chrV:9318216-9318296 4 7.65e-05 GGG TAGAGCGC TCGCTTCGCA chrI:8816537-8816617 62 7.65e-05 CAGAATTCGG TGGAGCGC GGTTGCAATT chrI:10553909-10553989 71 7.65e-05 AGAATTGCAA TGGAGCGC CT chrIV:4468124-4468204 55 7.65e-05 ATTTTCTCAG TAGAGCGC AGCTTCAACG chrI:9422344-9422424 50 7.65e-05 CTGTCTTGAT TAGAGCGC GTTTGCACTA chrIII:1080720-1080800 9 7.65e-05 GAGAGCGA TGGAGCGC ACTTGCACTT chrIV:4390624-4390704 73 8.73e-05 TGCGCCTTTT GCGCGCGC chrV:7237246-7237326 48 8.73e-05 CAATGGCACC GCGCGCGC TATTTTTTTA chrIV:14767866-14767946 63 1.10e-04 TCAATAAACT GGGCGCGC ATGCATTTCG chrI:6780227-6780307 71 1.10e-04 CGCGCGAAAT GAGCGCGC GA chrIV:7791303-7791383 36 1.32e-04 CTCGAGAGCA ACGCGCGC GAAATGATTT chrIII:10742621-10742701 71 1.32e-04 GCGTCGCAAT ACGCGCGC GT chrI:3266714-3266794 61 1.32e-04 TTTCAAACTC CCGCGCGC GGGTCTCGCA chrI:12652224-12652304 7 1.90e-04 GTCAGC AAGCGCGC CCCACTGAGA chrV:14351153-14351233 70 1.90e-04 tctctgctct cggcgcgc tgt chrX:6737701-6737781 26 1.90e-04 CACCACTATC AGGCGCGC ATGCATGGGA chrII:14063254-14063334 67 1.90e-04 GCCTCCTCGC AAGCGCGC TCCACT chrII:11620100-11620180 69 1.90e-04 AATGAAAAGC GCGAGCGC CCCC chrI:12665015-12665095 26 1.90e-04 GCAAACACGG CGGCGCGC ACTTGCGTAC chrIII:3068066-3068146 21 1.90e-04 ATTTTAATGC AAGCGCGC CCCACCGCAC chrX:4190703-4190783 73 2.14e-04 GAAACGGCAA GAGAGCGC chrIII:12351460-12351540 38 3.01e-04 AGATTGCCAA CAGAGCGC GATTGCGCCG chrI:9163479-9163559 6 3.01e-04 GTTGG CAGAGCGC CAAGTgtttg chrI:315206-315286 10 3.01e-04 GATTCTCAA CGGAGCGC ACTTGCTGCG chrII:4044509-4044589 54 3.01e-04 ACTGCGGACT TTGCGCGC GATATGACGA chrIII:8164038-8164118 50 3.01e-04 CTCGACACAA TTGCGCGC GTTGTTTAGA chrIII:13463072-13463152 72 3.27e-04 CTCACGGGCT GTGCGCGC A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVGMGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10715926-10716006 1.2e-05 18_[+3]_54 chrV:8606445-8606525 1.2e-05 54_[+3]_18 chrV:11078517-11078597 1.2e-05 32_[+3]_40 chrX:15040902-15040982 1.2e-05 63_[+3]_9 chrI:15034074-15034154 1.2e-05 51_[+3]_21 chrI:4789996-4790076 1.2e-05 20_[+3]_52 chrV:10579111-10579191 3.7e-05 36_[+3]_36 chrII:7337648-7337728 5e-05 69_[+3]_3 chrI:3516411-3516491 7.6e-05 9_[+3]_63 chrII:411009-411089 7.6e-05 19_[+3]_53 chrI:10178391-10178471 7.6e-05 37_[+3]_35 chrI:2996329-2996409 7.6e-05 54_[+3]_18 chrI:5429883-5429963 7.6e-05 65_[+3]_7 chrV:16965802-16965882 7.6e-05 68_[+3]_4 chrV:9318216-9318296 7.6e-05 3_[+3]_69 chrI:8816537-8816617 7.6e-05 61_[+3]_11 chrI:10553909-10553989 7.6e-05 70_[+3]_2 chrIV:4468124-4468204 7.6e-05 54_[+3]_18 chrI:9422344-9422424 7.6e-05 49_[+3]_23 chrIII:1080720-1080800 7.6e-05 8_[+3]_64 chrIV:4390624-4390704 8.7e-05 72_[+3] chrV:7237246-7237326 8.7e-05 47_[+3]_25 chrIV:14767866-14767946 0.00011 62_[+3]_10 chrI:6780227-6780307 0.00011 70_[+3]_2 chrIV:7791303-7791383 0.00013 35_[+3]_37 chrIII:10742621-10742701 0.00013 70_[+3]_2 chrI:3266714-3266794 0.00013 60_[+3]_12 chrI:12652224-12652304 0.00019 6_[+3]_66 chrV:14351153-14351233 0.00019 69_[+3]_3 chrX:6737701-6737781 0.00019 25_[+3]_47 chrII:14063254-14063334 0.00019 66_[+3]_6 chrII:11620100-11620180 0.00019 68_[+3]_4 chrI:12665015-12665095 0.00019 25_[+3]_47 chrIII:3068066-3068146 0.00019 20_[+3]_52 chrX:4190703-4190783 0.00021 72_[+3] chrIII:12351460-12351540 0.0003 37_[+3]_35 chrI:9163479-9163559 0.0003 5_[+3]_67 chrI:315206-315286 0.0003 9_[+3]_63 chrII:4044509-4044589 0.0003 53_[+3]_19 chrIII:8164038-8164118 0.0003 49_[+3]_23 chrIII:13463072-13463152 0.00033 71_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVGMGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TVGMGCGC width=8 seqs=41 chrV:10715926-10716006 ( 19) TCGCGCGC 1 chrV:8606445-8606525 ( 55) TCGCGCGC 1 chrV:11078517-11078597 ( 33) TCGCGCGC 1 chrX:15040902-15040982 ( 64) TCGCGCGC 1 chrI:15034074-15034154 ( 52) TCGCGCGC 1 chrI:4789996-4790076 ( 21) TCGCGCGC 1 chrV:10579111-10579191 ( 37) TGGCGCGC 1 chrII:7337648-7337728 ( 70) TCGAGCGC 1 chrI:3516411-3516491 ( 10) TAGAGCGC 1 chrII:411009-411089 ( 20) TAGAGCGC 1 chrI:10178391-10178471 ( 38) TGGAGCGC 1 chrI:2996329-2996409 ( 55) TGGAGCGC 1 chrI:5429883-5429963 ( 66) TAGAGCGC 1 chrV:16965802-16965882 ( 69) TGGAGCGC 1 chrV:9318216-9318296 ( 4) TAGAGCGC 1 chrI:8816537-8816617 ( 62) TGGAGCGC 1 chrI:10553909-10553989 ( 71) TGGAGCGC 1 chrIV:4468124-4468204 ( 55) TAGAGCGC 1 chrI:9422344-9422424 ( 50) TAGAGCGC 1 chrIII:1080720-1080800 ( 9) TGGAGCGC 1 chrIV:4390624-4390704 ( 73) GCGCGCGC 1 chrV:7237246-7237326 ( 48) GCGCGCGC 1 chrIV:14767866-14767946 ( 63) GGGCGCGC 1 chrI:6780227-6780307 ( 71) GAGCGCGC 1 chrIV:7791303-7791383 ( 36) ACGCGCGC 1 chrIII:10742621-10742701 ( 71) ACGCGCGC 1 chrI:3266714-3266794 ( 61) CCGCGCGC 1 chrI:12652224-12652304 ( 7) AAGCGCGC 1 chrV:14351153-14351233 ( 70) CGGCGCGC 1 chrX:6737701-6737781 ( 26) AGGCGCGC 1 chrII:14063254-14063334 ( 67) AAGCGCGC 1 chrII:11620100-11620180 ( 69) GCGAGCGC 1 chrI:12665015-12665095 ( 26) CGGCGCGC 1 chrIII:3068066-3068146 ( 21) AAGCGCGC 1 chrX:4190703-4190783 ( 73) GAGAGCGC 1 chrIII:12351460-12351540 ( 38) CAGAGCGC 1 chrI:9163479-9163559 ( 6) CAGAGCGC 1 chrI:315206-315286 ( 10) CGGAGCGC 1 chrII:4044509-4044589 ( 54) TTGCGCGC 1 chrIII:8164038-8164118 ( 50) TTGCGCGC 1 chrIII:13463072-13463152 ( 72) GTGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVGMGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 8.2e-006 -80 -69 -50 101 31 42 27 -186 -1200 -1200 205 -1200 78 124 -1200 -1200 -1200 -1200 205 -1200 -1200 208 -1200 -1200 -1200 -1200 205 -1200 -1200 208 -1200 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVGMGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 8.2e-006 0.146341 0.146341 0.170732 0.536585 0.317073 0.317073 0.292683 0.073171 0.000000 0.000000 1.000000 0.000000 0.439024 0.560976 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVGMGCGC MEME-3 regular expression -------------------------------------------------------------------------------- T[ACG]G[CA]GCGC -------------------------------------------------------------------------------- Time 15.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CTACCGTA MEME-4 width = 8 sites = 17 llr = 168 E-value = 2.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTACCGTA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::a pos.-specific C 73:aa::: probability G :::::a:: matrix T 37::::a: bits 2.1 *** 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.2 * ****** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTACCGTA consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACCGTA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4725527-4725607 59 1.48e-05 cgagaattct ctaccgta ttccaatttg chrI:12652224-12652304 46 1.48e-05 ATGCCAACAC CTACCGTA TACCAGACAA chrI:110687-110767 60 1.48e-05 GGCACGACAA CTACCGTA CCCCTTTCGC chrI:9163479-9163559 34 1.48e-05 aattggcgct ctaccgta ctttgcctgc chrV:11532334-11532414 4 1.48e-05 CGT CTACCGTA TTCTTCAACT chrIV:16845524-16845604 70 1.48e-05 tgtaaaatct ctaccgta gta chrIV:11149743-11149823 8 1.48e-05 TCGGCCC CTACCGTA GTCGTCTCCC chrIII:1418849-1418929 12 1.48e-05 CCCCGCCCAT CTACCGTA CTCACGAGCG chrII:7105117-7105197 73 1.48e-05 GCAGGCATTT CTACCGTA chrIII:3505325-3505405 70 2.80e-05 ACAGAAAAAT CCACCGTA GTC chrIII:7336331-7336411 15 2.80e-05 GCTCCACCGG CCACCGTA CCCTGCTGAA chrIII:9456279-9456359 38 2.80e-05 CAAGCCAAAC CCACCGTA CCCAAGCAAA chrIII:9546143-9546223 20 4.47e-05 CTTCCGCCAA TTACCGTA TTCTCTCATC chrI:4584831-4584911 40 4.47e-05 GAAACGAGTG TTACCGTA CTCTTGCTGC chrIII:12598615-12598695 57 4.47e-05 GCGGACTTGC TTACCGTA TACCTGGAGA chrV:8235491-8235571 44 5.95e-05 CTCGGCCATC TCACCGTA AAAATCGGAT chrIII:7208046-7208126 36 5.95e-05 AAAACGAGTG TCACCGTA GTCAGACGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACCGTA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4725527-4725607 1.5e-05 58_[+4]_14 chrI:12652224-12652304 1.5e-05 45_[+4]_27 chrI:110687-110767 1.5e-05 59_[+4]_13 chrI:9163479-9163559 1.5e-05 33_[+4]_39 chrV:11532334-11532414 1.5e-05 3_[+4]_69 chrIV:16845524-16845604 1.5e-05 69_[+4]_3 chrIV:11149743-11149823 1.5e-05 7_[+4]_65 chrIII:1418849-1418929 1.5e-05 11_[+4]_61 chrII:7105117-7105197 1.5e-05 72_[+4] chrIII:3505325-3505405 2.8e-05 69_[+4]_3 chrIII:7336331-7336411 2.8e-05 14_[+4]_58 chrIII:9456279-9456359 2.8e-05 37_[+4]_35 chrIII:9546143-9546223 4.5e-05 19_[+4]_53 chrI:4584831-4584911 4.5e-05 39_[+4]_33 chrIII:12598615-12598695 4.5e-05 56_[+4]_16 chrV:8235491-8235571 5.9e-05 43_[+4]_29 chrIII:7208046-7208126 5.9e-05 35_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACCGTA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTACCGTA width=8 seqs=17 chrIV:4725527-4725607 ( 59) CTACCGTA 1 chrI:12652224-12652304 ( 46) CTACCGTA 1 chrI:110687-110767 ( 60) CTACCGTA 1 chrI:9163479-9163559 ( 34) CTACCGTA 1 chrV:11532334-11532414 ( 4) CTACCGTA 1 chrIV:16845524-16845604 ( 70) CTACCGTA 1 chrIV:11149743-11149823 ( 8) CTACCGTA 1 chrIII:1418849-1418929 ( 12) CTACCGTA 1 chrII:7105117-7105197 ( 73) CTACCGTA 1 chrIII:3505325-3505405 ( 70) CCACCGTA 1 chrIII:7336331-7336411 ( 15) CCACCGTA 1 chrIII:9456279-9456359 ( 38) CCACCGTA 1 chrIII:9546143-9546223 ( 20) TTACCGTA 1 chrI:4584831-4584911 ( 40) TTACCGTA 1 chrIII:12598615-12598695 ( 57) TTACCGTA 1 chrV:8235491-8235571 ( 44) TCACCGTA 1 chrIII:7208046-7208126 ( 36) TCACCGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACCGTA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 2.5e-002 -1073 158 -1073 15 -1073 31 -1073 141 197 -1073 -1073 -1073 -1073 208 -1073 -1073 -1073 208 -1073 -1073 -1073 -1073 205 -1073 -1073 -1073 -1073 191 197 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACCGTA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.5e-002 0.000000 0.705882 0.000000 0.294118 0.000000 0.294118 0.000000 0.705882 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACCGTA MEME-4 regular expression -------------------------------------------------------------------------------- [CT][TC]ACCGTA -------------------------------------------------------------------------------- Time 18.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCASAT MEME-5 width = 8 sites = 17 llr = 163 E-value = 9.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCASAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::6:a: pos.-specific C a::a:6:: probability G ::a:24:: matrix T :a::2::a bits 2.1 * ** 1.9 **** ** 1.7 **** ** 1.5 **** ** Relative 1.2 **** ** Entropy 1.0 **** *** (13.8 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCACAT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCASAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:13976358-13976438 12 1.48e-05 TGTGTACACA CTGCACAT AGCCCCCCCC chrI:9163479-9163559 48 1.48e-05 cgtactttgc ctgcacat ctaacAGATC chrX:2242957-2243037 37 1.48e-05 TGTGTCCTGC CTGCACAT CTAACTTTAC chrI:6835326-6835406 43 1.48e-05 CTTATCATTC CTGCACAT CTAACATAGA chrII:11980281-11980361 33 1.48e-05 GTCCAGCAAC CTGCACAT CTAATTTGCT chrIV:11149743-11149823 44 1.48e-05 GCTATATGAC CTGCACAT CTAACTCGAT chrIV:1709903-1709983 40 1.48e-05 ACCGGACTGC CTGCACAT CTAACTTTCC chrI:4139413-4139493 58 3.00e-05 TAGAGAGAAC CTGCAGAT CTAACTGCGC chrIII:9456279-9456359 57 3.00e-05 CCAAGCAAAC CTGCAGAT CAAACTCGAG chrIII:8164038-8164118 15 3.00e-05 CCTCAAACAC CTGCAGAT CTAAGTACGA chrV:6559753-6559833 34 3.00e-05 GAGCATTCGA CTGCAGAT CGAGAGGTCC chrV:9789956-9790036 63 4.40e-05 GCAAGCGACT CTGCGCAT CTTGTTGGCA chrII:8569478-8569558 21 4.40e-05 ATTCCCGCGC CTGCGCAT CAAACTTTAT chrX:16202298-16202378 4 5.95e-05 CTG CTGCTCAT CTTTTAATCG chrV:7196621-7196701 47 5.95e-05 CGTAGCGACT CTGCTCAT CATTGTGTGC chrII:5714974-5715054 54 7.38e-05 GCGTGTCACC CTGCGGAT CTTACTCAAG chrII:10851176-10851256 44 8.96e-05 AGACAGGCAT CTGCTGAT GAGAGTGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCASAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:13976358-13976438 1.5e-05 11_[+5]_61 chrI:9163479-9163559 1.5e-05 47_[+5]_25 chrX:2242957-2243037 1.5e-05 36_[+5]_36 chrI:6835326-6835406 1.5e-05 42_[+5]_30 chrII:11980281-11980361 1.5e-05 32_[+5]_40 chrIV:11149743-11149823 1.5e-05 43_[+5]_29 chrIV:1709903-1709983 1.5e-05 39_[+5]_33 chrI:4139413-4139493 3e-05 57_[+5]_15 chrIII:9456279-9456359 3e-05 56_[+5]_16 chrIII:8164038-8164118 3e-05 14_[+5]_58 chrV:6559753-6559833 3e-05 33_[+5]_39 chrV:9789956-9790036 4.4e-05 62_[+5]_10 chrII:8569478-8569558 4.4e-05 20_[+5]_52 chrX:16202298-16202378 5.9e-05 3_[+5]_69 chrV:7196621-7196701 5.9e-05 46_[+5]_26 chrII:5714974-5715054 7.4e-05 53_[+5]_19 chrII:10851176-10851256 9e-05 43_[+5]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCASAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCASAT width=8 seqs=17 chrII:13976358-13976438 ( 12) CTGCACAT 1 chrI:9163479-9163559 ( 48) CTGCACAT 1 chrX:2242957-2243037 ( 37) CTGCACAT 1 chrI:6835326-6835406 ( 43) CTGCACAT 1 chrII:11980281-11980361 ( 33) CTGCACAT 1 chrIV:11149743-11149823 ( 44) CTGCACAT 1 chrIV:1709903-1709983 ( 40) CTGCACAT 1 chrI:4139413-4139493 ( 58) CTGCAGAT 1 chrIII:9456279-9456359 ( 57) CTGCAGAT 1 chrIII:8164038-8164118 ( 15) CTGCAGAT 1 chrV:6559753-6559833 ( 34) CTGCAGAT 1 chrV:9789956-9790036 ( 63) CTGCGCAT 1 chrII:8569478-8569558 ( 21) CTGCGCAT 1 chrX:16202298-16202378 ( 4) CTGCTCAT 1 chrV:7196621-7196701 ( 47) CTGCTCAT 1 chrII:5714974-5715054 ( 54) CTGCGGAT 1 chrII:10851176-10851256 ( 44) CTGCTGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCASAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 9.8e+000 -1073 208 -1073 -1073 -1073 -1073 -1073 191 -1073 -1073 205 -1073 -1073 208 -1073 -1073 134 -1073 -46 -59 -1073 145 54 -1073 197 -1073 -1073 -1073 -1073 -1073 -1073 191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCASAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 9.8e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.647059 0.000000 0.176471 0.176471 0.000000 0.647059 0.352941 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCASAT MEME-5 regular expression -------------------------------------------------------------------------------- CTGCA[CG]AT -------------------------------------------------------------------------------- Time 22.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:5272-5352 8.67e-01 80 chrM:3301-3381 9.29e-01 80 chrM:8170-8250 8.75e-01 80 chrI:12903650-12903730 4.98e-02 31_[+1(1.29e-05)]_41 chrM:10182-10262 1.00e+00 80 chrIV:1709903-1709983 1.70e-03 39_[+5(1.48e-05)]_33 chrM:5970-6050 5.52e-01 80 chrIII:7189881-7189961 2.54e-01 80 chrIV:10129137-10129217 4.70e-02 67_[+2(1.36e-05)]_5 chrM:3609-3689 9.16e-01 80 chrIII:7573035-7573115 1.76e-01 80 chrI:4769649-4769729 3.22e-01 80 chrII:1157315-1157395 7.73e-01 80 chrIV:3313453-3313533 9.00e-01 80 chrII:10658895-10658975 3.16e-04 7_[+1(2.61e-05)]_10_[+2(1.36e-05)]_\ 47 chrI:4647215-4647295 8.50e-03 41_[+2(1.36e-05)]_31 chrIII:7179807-7179887 2.39e-01 80 chrM:10945-11025 1.00e+00 80 chrM:9095-9175 8.36e-01 80 chrM:8417-8497 8.97e-01 80 chrI:3037938-3038018 2.98e-01 80 chrM:7205-7285 7.82e-01 80 chrV:15590377-15590457 4.92e-01 80 chrII:1315422-1315502 7.49e-01 80 chrIII:13466357-13466437 5.26e-01 80 chrII:7105117-7105197 6.00e-02 72_[+4(1.48e-05)] chrM:4593-4673 9.16e-01 80 chrIII:3068066-3068146 1.75e-02 80 chrI:12968596-12968676 5.66e-01 80 chrII:3523683-3523763 5.28e-01 80 chrIII:62495-62575 4.60e-01 80 chrX:14437869-14437949 6.02e-01 80 chrM:2156-2236 9.94e-01 80 chrIII:7208046-7208126 8.07e-04 35_[+4(5.95e-05)]_9_[+2(1.36e-05)]_\ 20 chrIII:1420002-1420082 6.36e-01 80 chrIII:1418849-1418929 5.72e-05 11_[+4(1.48e-05)]_14_[+1(3.84e-05)]_\ 39 chrI:852201-852281 1.84e-01 80 chrII:1531450-1531530 3.29e-01 80 chrII:1075736-1075816 2.07e-01 80 chrM:2360-2440 9.87e-01 80 chrV:12967967-12968047 4.61e-01 80 chrX:15535424-15535504 5.78e-01 80 chrIV:14033206-14033286 4.33e-01 80 chrII:4048137-4048217 8.49e-01 80 chrM:6170-6250 8.91e-01 80 chrV:2600689-2600769 4.32e-02 46_[+2(5.15e-05)]_26 chrX:4145656-4145736 1.15e-01 80 chrIII:2528776-2528856 7.50e-03 25_[+2(1.36e-05)]_47 chrIII:7181988-7182068 3.82e-01 80 chrX:9024430-9024510 5.67e-01 80 chrIV:11149743-11149823 7.46e-04 7_[+4(1.48e-05)]_28_[+5(1.48e-05)]_\ 29 chrIII:7184214-7184294 2.17e-01 7_[+2(8.12e-05)]_65 chrIV:10481805-10481885 7.95e-01 80 chrIII:2101038-2101118 3.93e-01 80 chrV:6559753-6559833 8.86e-02 33_[+5(3.00e-05)]_39 chrV:7196621-7196701 1.42e-04 22_[+2(5.15e-05)]_16_[+5(5.95e-05)]_\ 26 chrII:11980281-11980361 1.18e-01 32_[+5(1.48e-05)]_40 chrIII:1080720-1080800 2.65e-03 8_[+3(7.65e-05)]_37_[+1(3.84e-05)]_\ 19 chrIV:16656390-16656470 7.78e-02 1_[+2(5.15e-05)]_71 chrM:1187-1267 1.00e+00 80 chrIII:8164038-8164118 8.02e-03 14_[+5(3.00e-05)]_58 chrII:1344570-1344650 9.72e-01 80 chrII:8569478-8569558 2.59e-02 20_[+5(4.40e-05)]_52 chrI:12995760-12995840 4.28e-01 80 chrIII:9456279-9456359 3.76e-04 37_[+4(2.80e-05)]_11_[+5(3.00e-05)]_\ 16 chrII:7337648-7337728 4.46e-02 69_[+3(4.96e-05)]_3 chrIV:4450080-4450160 2.11e-01 80 chrM:12386-12466 9.86e-01 80 chrI:382476-382556 5.67e-04 40_[+2(1.36e-05)]_32 chrII:14349638-14349718 2.35e-01 80 chrIII:6888697-6888777 3.69e-01 80 chrIII:7162481-7162561 6.12e-03 3_[+2(5.15e-05)]_69 chrIII:5706392-5706472 8.34e-03 47_[+1(1.29e-05)]_25 chrII:4044509-4044589 7.14e-02 80 chrX:6841009-6841089 5.40e-01 80 chrII:11874841-11874921 2.26e-03 52_[+1(3.84e-05)]_20 chrIV:16845524-16845604 1.05e-02 69_[+4(1.48e-05)]_3 chrI:4789996-4790076 8.03e-05 20_[+3(1.19e-05)]_18_[+1(3.84e-05)]_\ 26 chrIV:11147125-11147205 5.31e-01 80 chrIII:4754321-4754401 4.04e-02 52_[+1(5.09e-05)]_20 chrIII:11936156-11936236 2.96e-01 80 chrI:8808093-8808173 2.84e-02 63_[+1(3.84e-05)]_9 chrV:8235491-8235571 3.61e-03 43_[+4(5.95e-05)]_14_[+2(6.65e-05)]_\ 7 chrII:6489918-6489998 2.75e-01 80 chrI:9422344-9422424 4.53e-03 5_[+1(2.61e-05)]_36_[+3(7.65e-05)]_\ 23 chrIV:4468124-4468204 7.07e-02 54_[+3(7.65e-05)]_18 chrIII:10407443-10407523 8.73e-04 2_[+1(3.84e-05)]_57_[+2(8.12e-05)]_\ 5 chrX:14162153-14162233 8.47e-01 80 chrII:12541738-12541818 1.00e+00 80 chrIII:7336331-7336411 3.26e-04 14_[+4(2.80e-05)]_27_[+1(3.84e-05)]_\ 23 chrM:4805-4885 1.00e+00 80 chrI:2928166-2928246 2.83e-02 11_[+2(1.36e-05)]_61 chrIV:16389261-16389341 6.34e-01 80 chrM:9298-9378 9.05e-01 80 chrI:4139413-4139493 2.40e-02 57_[+5(3.00e-05)]_15 chrI:11611424-11611504 2.02e-02 56_[+1(1.29e-05)]_16 chrI:3266714-3266794 5.44e-03 68_[+2(1.36e-05)]_4 chrIV:4727989-4728069 6.53e-01 80 chrI:8813433-8813513 5.44e-03 8_[+1(2.61e-05)]_64 chrX:5984728-5984808 1.45e-01 80 chrIII:8797351-8797431 7.93e-01 80 chrV:17858049-17858129 5.12e-01 80 chrX:8650655-8650735 4.97e-01 80 chrI:7578900-7578980 8.72e-01 80 chrV:5684693-5684773 4.20e-02 50_[+1(1.29e-05)]_22 chrIII:12978959-12979039 1.89e-03 13_[+2(1.36e-05)]_59 chrIV:2657521-2657601 9.17e-01 80 chrIV:15931992-15932072 3.71e-02 59_[+1(3.84e-05)]_13 chrV:14347360-14347440 6.19e-01 80 chrI:13324208-13324288 4.81e-01 80 chrX:7181788-7181868 5.78e-01 80 chrX:11603453-11603533 9.53e-01 80 chrI:5843051-5843131 5.17e-01 80 chrII:5714974-5715054 1.93e-02 53_[+5(7.38e-05)]_19 chrI:15034074-15034154 1.58e-02 28_[+3(8.73e-05)]_15_[+3(1.19e-05)]_\ 21 chrI:10553909-10553989 2.37e-04 25_[+1(3.84e-05)]_37_[+3(7.65e-05)]_\ 2 chrIV:4728188-4728268 1.00e+00 80 chrIV:7320051-7320131 4.49e-01 80 chrI:8816537-8816617 2.66e-02 61_[+3(7.65e-05)]_11 chrIV:4445859-4445939 1.71e-03 10_[+4(8.72e-05)]_62 chrX:7794535-7794615 9.81e-01 80 chrX:2531445-2531525 5.81e-01 80 chrI:1842040-1842120 4.64e-04 37_[+1(3.84e-05)]_8_[+2(8.12e-05)]_\ 19 chrIII:12598615-12598695 5.84e-05 4_[+2(5.15e-05)]_44_[+4(4.47e-05)]_\ 16 chrX:2364891-2364971 7.84e-01 80 chrIII:12615268-12615348 8.82e-01 80 chrX:6867876-6867956 2.29e-01 80 chrI:12665015-12665095 2.47e-02 80 chrI:378824-378904 9.72e-01 80 chrV:19142795-19142875 6.10e-01 80 chrX:2598931-2599011 6.93e-01 80 chrX:13730326-13730406 3.12e-01 80 chrV:10965639-10965719 8.56e-01 80 chrX:8971627-8971707 4.26e-01 80 chrI:7021434-7021514 1.02e-02 69_[+2(1.36e-05)]_3 chrV:7237246-7237326 2.57e-01 47_[+3(8.73e-05)]_25 chrV:3391179-3391259 2.30e-01 80 chrV:12968167-12968247 2.42e-01 80 chrIV:796809-796889 9.23e-01 80 chrX:2527967-2528047 1.57e-01 80 chrV:10353182-10353262 5.28e-01 80 chrX:16202298-16202378 8.24e-02 3_[+5(5.95e-05)]_69 chrV:9980973-9981053 7.04e-01 80 chrI:8748022-8748102 2.61e-01 80 chrV:7728301-7728381 4.47e-01 80 chrV:10579111-10579191 1.55e-01 36_[+3(3.68e-05)]_36 chrV:9318216-9318296 4.64e-02 3_[+3(7.65e-05)]_69 chrIV:7084935-7085015 6.87e-01 80 chrX:17544459-17544539 5.03e-01 80 chrI:315206-315286 6.21e-02 80 chrV:16965802-16965882 4.73e-03 44_[+1(2.61e-05)]_16_[+3(7.65e-05)]_\ 4 chrIV:4748507-4748587 5.00e-01 80 chrIV:16399236-16399316 9.98e-01 80 chrX:13653760-13653840 9.71e-01 80 chrIII:11792800-11792880 7.84e-01 80 chrIII:7278654-7278734 9.91e-01 80 chrIII:3505325-3505405 1.15e-04 18_[+2(1.36e-05)]_43_[+4(2.80e-05)]_\ 3 chrI:14756791-14756871 2.27e-01 80 chrIII:3249152-3249232 8.76e-01 80 chrI:4584831-4584911 6.21e-03 39_[+4(4.47e-05)]_33 chrII:13872655-13872735 7.39e-04 20_[+1(2.61e-05)]_52 chrIV:4390624-4390704 5.05e-02 72_[+3(8.73e-05)] chrIII:7973339-7973419 1.35e-01 80 chrIII:13463072-13463152 1.46e-03 80 chrIII:12399919-12399999 2.32e-01 80 chrI:9688831-9688911 1.40e-01 80 chrII:11620100-11620180 5.28e-03 32_[+1(6.48e-05)]_40 chrV:11532334-11532414 4.02e-02 3_[+4(1.48e-05)]_69 chrI:5429883-5429963 8.25e-02 65_[+3(7.65e-05)]_7 chrI:6835326-6835406 4.92e-02 42_[+5(1.48e-05)]_30 chrIII:8130525-8130605 8.21e-03 80 chrX:15040902-15040982 3.11e-02 63_[+3(1.19e-05)]_9 chrIV:16776088-16776168 4.73e-01 80 chrX:2242957-2243037 9.33e-03 36_[+5(1.48e-05)]_36 chrIV:6321871-6321951 9.01e-01 80 chrX:4190703-4190783 3.53e-02 80 chrX:1389554-1389634 6.25e-01 80 chrIV:6919509-6919589 2.57e-01 80 chrV:11078517-11078597 1.09e-02 32_[+3(1.19e-05)]_40 chrI:11978802-11978882 7.60e-01 80 chrI:8615173-8615253 4.77e-01 80 chrI:2996329-2996409 9.99e-02 54_[+3(7.65e-05)]_18 chrI:12654799-12654879 5.56e-01 80 chrV:8606445-8606525 2.36e-05 44_[+2(5.15e-05)]_2_[+3(1.19e-05)]_\ 18 chrI:2929695-2929775 3.94e-01 80 chrX:5729093-5729173 9.95e-01 80 chrI:9163479-9163559 3.53e-05 33_[+4(1.48e-05)]_6_[+5(1.48e-05)]_\ 25 chrII:5181797-5181877 1.01e-01 80 chrIV:6336842-6336922 9.56e-01 80 chrIV:6376730-6376810 3.42e-01 80 chrI:5870708-5870788 7.09e-01 80 chrIII:10742621-10742701 3.33e-02 80 chrI:3822692-3822772 9.09e-01 80 chrIV:13395347-13395427 1.95e-02 30_[+1(2.61e-05)]_42 chrIII:10214535-10214615 9.11e-01 80 chrIII:8307515-8307595 9.00e-01 80 chrX:2237590-2237670 1.37e-04 20_[+1(2.61e-05)]_43_[+2(1.36e-05)]_\ 1 chrIV:4093257-4093337 9.39e-01 80 chrI:535402-535482 2.84e-01 80 chrIV:11179309-11179389 7.36e-01 80 chrI:10178391-10178471 1.06e-01 37_[+3(7.65e-05)]_35 chrIV:11593624-11593704 7.00e-01 80 chrX:16604774-16604854 5.25e-01 80 chrIII:12351460-12351540 3.42e-01 80 chrIII:13464660-13464740 6.51e-01 80 chrX:4395591-4395671 6.92e-01 80 chrII:10851176-10851256 3.37e-03 43_[+5(8.96e-05)]_20_[+1(2.61e-05)]_\ 1 chrII:156071-156151 4.63e-01 80 chrI:6799621-6799701 1.99e-01 80 chrIV:11956442-11956522 1.84e-02 46_[+1(1.29e-05)]_26 chrI:3987190-3987270 9.96e-01 80 chrI:8786908-8786988 2.04e-01 63_[+1(2.61e-05)]_9 chrV:9789956-9790036 3.62e-03 62_[+5(4.40e-05)]_10 chrV:10715926-10716006 6.72e-03 18_[+3(1.19e-05)]_54 chrIV:16491786-16491866 5.10e-01 80 chrII:13976358-13976438 3.14e-02 11_[+5(1.48e-05)]_61 chrII:411009-411089 3.93e-02 19_[+3(7.65e-05)]_53 chrI:3516411-3516491 1.86e-03 9_[+3(7.65e-05)]_63 chrII:14063254-14063334 2.34e-01 80 chrI:6780227-6780307 3.47e-02 80 chrIV:14767866-14767946 1.02e-03 22_[+2(2.70e-05)]_50 chrX:6220039-6220119 5.31e-01 80 chrI:13756534-13756614 5.61e-02 4_[+1(6.48e-05)]_68 chrX:6737701-6737781 7.26e-02 80 chrIII:1424448-1424528 9.56e-01 80 chrI:8808292-8808372 6.13e-01 80 chrIII:10845010-10845090 3.70e-01 80 chrI:8426810-8426890 3.67e-01 80 chrIV:6790623-6790703 4.23e-01 80 chrX:10435737-10435817 3.76e-01 80 chrI:110687-110767 9.24e-05 42_[+2(1.36e-05)]_9_[+4(1.48e-05)]_\ 13 chrIV:14825114-14825194 7.77e-01 80 chrX:13514576-13514656 9.85e-01 80 chrIV:14464243-14464323 7.98e-03 68_[+1(6.48e-05)]_4 chrIII:8874348-8874428 5.00e-01 80 chrV:14351153-14351233 1.72e-01 80 chrIII:9443630-9443710 4.37e-01 80 chrI:12652224-12652304 1.75e-03 45_[+4(1.48e-05)]_27 chrI:13337261-13337341 1.59e-02 4_[+2(1.36e-05)]_68 chrI:9268948-9269028 1.39e-01 80 chrI:9665176-9665256 3.69e-01 80 chrIV:7791303-7791383 1.41e-02 80 chrIV:8687926-8688006 9.47e-01 80 chrI:8245557-8245637 7.94e-01 80 chrIII:9546143-9546223 3.71e-02 19_[+4(4.47e-05)]_53 chrIII:6551756-6551836 2.13e-01 80 chrV:8228962-8229042 2.82e-01 80 chrII:8787539-8787619 5.90e-01 80 chrIV:4725527-4725607 1.40e-01 58_[+4(1.48e-05)]_14 chrX:6744013-6744093 4.67e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************