******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/zag-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:535917-535997 1.0000 80 chrIV:11147141-11147221 1.0000 80 chrIV:11071046-11071126 1.0000 80 chrIII:13275947-13276027 1.0000 80 chrV:9343688-9343768 1.0000 80 chrV:10858527-10858607 1.0000 80 chrIV:11809929-11810009 1.0000 80 chrX:2536607-2536687 1.0000 80 chrX:11603717-11603797 1.0000 80 chrV:10712248-10712328 1.0000 80 chrIII:6137599-6137679 1.0000 80 chrI:5874501-5874581 1.0000 80 chrV:20790884-20790964 1.0000 80 chrV:15071472-15071552 1.0000 80 chrIV:1070464-1070544 1.0000 80 chrX:11643710-11643790 1.0000 80 chrI:14566154-14566234 1.0000 80 chrV:7728303-7728383 1.0000 80 chrIV:11149755-11149835 1.0000 80 chrX:2364891-2364971 1.0000 80 chrI:4224945-4225025 1.0000 80 chrI:7658788-7658868 1.0000 80 chrIII:12583650-12583730 1.0000 80 chrIII:10284371-10284451 1.0000 80 chrI:12548027-12548107 1.0000 80 chrI:2878694-2878774 1.0000 80 chrX:4222984-4223064 1.0000 80 chrIII:25637-25717 1.0000 80 chrI:2291182-2291262 1.0000 80 chrV:6228574-6228654 1.0000 80 chrI:5906178-5906258 1.0000 80 chrIV:11027709-11027789 1.0000 80 chrV:18722232-18722312 1.0000 80 chrV:10178321-10178401 1.0000 80 chrX:17513715-17513795 1.0000 80 chrX:4389005-4389085 1.0000 80 chrI:5870698-5870778 1.0000 80 chrI:1691468-1691548 1.0000 80 chrX:1909613-1909693 1.0000 80 chrIII:6352537-6352617 1.0000 80 chrX:10435754-10435834 1.0000 80 chrX:8477498-8477578 1.0000 80 chrV:10174825-10174905 1.0000 80 chrX:1389537-1389617 1.0000 80 chrIII:8800423-8800503 1.0000 80 chrX:13527533-13527613 1.0000 80 chrV:3712681-3712761 1.0000 80 chrX:17544562-17544642 1.0000 80 chrI:7492063-7492143 1.0000 80 chrI:8426832-8426912 1.0000 80 chrII:14040432-14040512 1.0000 80 chrX:12889903-12889983 1.0000 80 chrX:15607599-15607679 1.0000 80 chrIV:14464282-14464362 1.0000 80 chrII:10552093-10552173 1.0000 80 chrII:8185146-8185226 1.0000 80 chrIV:7845623-7845703 1.0000 80 chrV:17921544-17921624 1.0000 80 chrV:10961568-10961648 1.0000 80 chrIV:11119246-11119326 1.0000 80 chrIII:3068102-3068182 1.0000 80 chrX:2242970-2243050 1.0000 80 chrX:13687165-13687245 1.0000 80 chrIV:14071065-14071145 1.0000 80 chrX:5729140-5729220 1.0000 80 chrII:11746977-11747057 1.0000 80 chrV:17857881-17857961 1.0000 80 chrIV:10252451-10252531 1.0000 80 chrI:9097760-9097840 1.0000 80 chrIV:5607571-5607651 1.0000 80 chrIII:10096718-10096798 1.0000 80 chrV:12465497-12465577 1.0000 80 chrV:6246790-6246870 1.0000 80 chrX:949637-949717 1.0000 80 chrX:6742265-6742345 1.0000 80 chrIII:3460209-3460289 1.0000 80 chrX:10637590-10637670 1.0000 80 chrX:1446974-1447054 1.0000 80 chrI:5316274-5316354 1.0000 80 chrIII:8130566-8130646 1.0000 80 chrX:15354041-15354121 1.0000 80 chrI:12815954-12816034 1.0000 80 chrIV:15471578-15471658 1.0000 80 chrIII:3801542-3801622 1.0000 80 chrX:12018099-12018179 1.0000 80 chrIV:11082954-11083034 1.0000 80 chrV:14355885-14355965 1.0000 80 chrX:16056561-16056641 1.0000 80 chrII:11635275-11635355 1.0000 80 chrIII:13061261-13061341 1.0000 80 chrX:7334543-7334623 1.0000 80 chrX:14853941-14854021 1.0000 80 chrI:12039935-12040015 1.0000 80 chrX:1345028-1345108 1.0000 80 chrX:12363178-12363258 1.0000 80 chrI:9163481-9163561 1.0000 80 chrII:6589051-6589131 1.0000 80 chrX:16797012-16797092 1.0000 80 chrX:13969573-13969653 1.0000 80 chrI:535348-535428 1.0000 80 chrI:8816524-8816604 1.0000 80 chrII:5055335-5055415 1.0000 80 chrIII:7498518-7498598 1.0000 80 chrIII:9619306-9619386 1.0000 80 chrI:13514360-13514440 1.0000 80 chrIII:9668087-9668167 1.0000 80 chrX:11031451-11031531 1.0000 80 chrIV:12391246-12391326 1.0000 80 chrIV:15646733-15646813 1.0000 80 chrV:10715949-10716029 1.0000 80 chrIV:17249820-17249900 1.0000 80 chrV:9546975-9547055 1.0000 80 chrIV:11566310-11566390 1.0000 80 chrIII:1923725-1923805 1.0000 80 chrI:3824383-3824463 1.0000 80 chrX:5984783-5984863 1.0000 80 chrIII:5679096-5679176 1.0000 80 chrII:4851810-4851890 1.0000 80 chrII:2974073-2974153 1.0000 80 chrIII:8795879-8795959 1.0000 80 chrI:8786938-8787018 1.0000 80 chrX:14708348-14708428 1.0000 80 chrI:1873765-1873845 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_zag-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/zag-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 123 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 9840 N= 123 sample: seed= 0 hsfrac= 0 searchsize= 9840 norand= no csites= 1000 Letter frequencies in dataset: A 0.253 C 0.242 G 0.241 T 0.265 Background letter frequencies (from file dataset with add-one prior applied): A 0.253 C 0.242 G 0.241 T 0.265 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KCKTCTCT MEME-1 width = 8 sites = 52 llr = 372 E-value = 1.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C 171:7:9: probability G 3:4::::: matrix T 533a3a1a bits 2.1 1.9 * * * 1.6 * *** 1.4 * *** Relative 1.2 * ***** Entropy 1.0 * ***** (10.3 bits) 0.8 * ***** 0.6 * ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel TCGTCTCT consensus GTT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8130566-8130646 52 1.68e-05 GCACGTTTTT TCGTCTCT CGCCTCCATT chrX:6742265-6742345 52 1.68e-05 GCCCTGCATA TCGTCTCT CCCAGGGCCC chrX:4389005-4389085 61 1.68e-05 CCCGTCTATG TCGTCTCT TCTCACTCTC chrIV:11809929-11810009 29 1.68e-05 TCGAGCCTCT TCGTCTCT ATACGTCTGC chrIII:3801542-3801622 46 3.54e-05 TTTCTCAGTC TCTTCTCT TTGTATTTCT chrV:6246790-6246870 50 3.54e-05 TTTGCCTCCC TCTTCTCT TTTTCCTCTT chrV:17921544-17921624 65 3.54e-05 TGTCTGCGTC TCTTCTCT CTCGCACG chrV:10174825-10174905 41 3.54e-05 TCTCTATGAG TCTTCTCT TCGATTTCAG chrIV:11566310-11566390 61 5.07e-05 CCAGCGTGCT GCGTCTCT TCAGGCAACA chrX:11031451-11031531 45 5.07e-05 AAATTTCTCT GCGTCTCT GATGCGAACT chrI:13514360-13514440 17 5.07e-05 TCAACTCTCT GCGTCTCT ACTCTCTACG chrI:12039935-12040015 57 5.07e-05 ACAAGTGCCT GCGTCTCT TACTCTCCCC chrI:12815954-12816034 62 5.07e-05 CTGAGTGTCT GCGTCTCT GATGACTCAT chrIII:25637-25717 60 5.07e-05 CTATTTCTCT GCGTCTCT CACCTCTCAG chrIII:12583650-12583730 13 5.07e-05 GTGTGTGTCT GCGTCTCT GACCAGTAAG chrV:15071472-15071552 51 5.07e-05 TGATGTCTCT GCGTCTCT ATCCGTCTCT chrX:15607599-15607679 64 6.75e-05 TGATGCACGA GCTTCTCT CATCGCCAC chrV:9546975-9547055 6 1.04e-04 ATTTT TCGTTTCT GTGACGCTTT chrII:6589051-6589131 39 1.04e-04 CTCTGTCTCG TCGTTTCT CATACTCCTT chrX:7334543-7334623 9 1.04e-04 AGTCGGCC TCGTTTCT GCCTCTGTAC chrX:2242970-2243050 1 1.04e-04 . TCGTTTCT GGCTGTGTGT chrI:3824383-3824463 14 1.22e-04 ctatctctct tcatctct ctTGTTATAG chrX:8477498-8477578 23 1.22e-04 CGCCCTCTTC TCATCTCT CACTCTCTGC chrX:2536607-2536687 8 1.22e-04 gagCGCG TCAtctct ctctctctcc chrIV:14071065-14071145 66 1.63e-04 GCGAATGTCG TTTTCTCT GCACTCT chrX:13527533-13527613 63 1.63e-04 tctatgtctc ttttctct cactctcttt chrX:10435754-10435834 3 1.63e-04 CT TTTTCTCT CTTCCTCCCG chrI:1691468-1691548 58 1.63e-04 TCATTTCTCA TTTTCTCT GGGGGTTCTT chrIII:13275947-13276027 41 1.63e-04 TGGCTCTTCC TTTTCTCT CTCTCGTGCT chrIII:8800423-8800503 34 2.29e-04 CGTGCATAGA GTGTCTCT CTCTCTCTCA chrI:4224945-4225025 70 2.29e-04 TGTCTCCGTC TCCTCTCT ATG chrV:7728303-7728383 61 2.29e-04 ATCTTTCTTG CCGTCTCT TCCCTCCGCA chrX:16797012-16797092 14 2.98e-04 CGACCAAAAG GCTTTTCT TCTTTTTGTC chrI:5316274-5316354 36 2.98e-04 GCCATCAGAT CCTTCTCT CTCTCTCTTT chrV:12465497-12465577 72 2.98e-04 ATCTTTTTCT GTTTCTCT C chrI:9097760-9097840 64 2.98e-04 AAACAAGTTT GTTTCTCT ATCTCTGTC chrV:10178321-10178401 67 3.73e-04 ATATGTTGTA TCATTTCT TCATGA chrIV:10252451-10252531 6 3.95e-04 CCAAC TTTTTTCT TCCTGTTAGG chrX:17513715-17513795 59 5.54e-04 TTATCGTCAT GCATTTCT CGTTGTGCGG chrIV:17249820-17249900 8 6.31e-04 GTGTAGA GTTTTTCT CAGAAACTCG chrIII:3068102-3068182 49 6.31e-04 TTTAGGACGA CTTTCTCT ATTTTTCAAC chrX:949637-949717 23 6.97e-04 GGTGctctct ccctctct tcatctcact chrIII:6137599-6137679 46 7.16e-04 CTTTCCGGCC GCTTCTTT CCTCAGTCGG chrX:12363178-12363258 73 7.53e-04 TTTGGTTTAT TTATTTCT chrIV:14464282-14464362 72 7.53e-04 CGGGATGATT TTATTTCT T chrI:5870698-5870778 27 7.53e-04 AAGTGTATCT ACGTCTCT TCCCTCTCGT chrV:3712681-3712761 46 8.50e-04 TTGTATTGTT TCGTTTTT ATCGGCAAAA chrIV:11149755-11149835 5 9.39e-04 GTAG TCGTCTCC CGTCACTTTG chrIV:15646733-15646813 64 1.13e-03 TGCGTACTCA CCCTTTCT TATTATTTC chrX:14853941-14854021 68 1.13e-03 GCAGACACAT TCCTCTTT CCGTC chrV:14355885-14355965 42 1.13e-03 AAATCTCTTG GCGTTTTT CGCGTGCACG chrI:7492063-7492143 2 1.13e-03 T CTCTCTCT CACTTGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8130566-8130646 1.7e-05 51_[+1]_21 chrX:6742265-6742345 1.7e-05 51_[+1]_21 chrX:4389005-4389085 1.7e-05 60_[+1]_12 chrIV:11809929-11810009 1.7e-05 28_[+1]_44 chrIII:3801542-3801622 3.5e-05 45_[+1]_27 chrV:6246790-6246870 3.5e-05 49_[+1]_23 chrV:17921544-17921624 3.5e-05 64_[+1]_8 chrV:10174825-10174905 3.5e-05 40_[+1]_32 chrIV:11566310-11566390 5.1e-05 60_[+1]_12 chrX:11031451-11031531 5.1e-05 44_[+1]_28 chrI:13514360-13514440 5.1e-05 16_[+1]_56 chrI:12039935-12040015 5.1e-05 56_[+1]_16 chrI:12815954-12816034 5.1e-05 61_[+1]_11 chrIII:25637-25717 5.1e-05 59_[+1]_13 chrIII:12583650-12583730 5.1e-05 12_[+1]_60 chrV:15071472-15071552 5.1e-05 50_[+1]_22 chrX:15607599-15607679 6.8e-05 63_[+1]_9 chrV:9546975-9547055 0.0001 5_[+1]_67 chrII:6589051-6589131 0.0001 38_[+1]_34 chrX:7334543-7334623 0.0001 8_[+1]_64 chrX:2242970-2243050 0.0001 [+1]_72 chrI:3824383-3824463 0.00012 13_[+1]_59 chrX:8477498-8477578 0.00012 22_[+1]_50 chrX:2536607-2536687 0.00012 7_[+1]_65 chrIV:14071065-14071145 0.00016 65_[+1]_7 chrX:13527533-13527613 0.00016 62_[+1]_10 chrX:10435754-10435834 0.00016 2_[+1]_70 chrI:1691468-1691548 0.00016 57_[+1]_15 chrIII:13275947-13276027 0.00016 40_[+1]_32 chrIII:8800423-8800503 0.00023 33_[+1]_39 chrI:4224945-4225025 0.00023 69_[+1]_3 chrV:7728303-7728383 0.00023 60_[+1]_12 chrX:16797012-16797092 0.0003 13_[+1]_59 chrI:5316274-5316354 0.0003 35_[+1]_37 chrV:12465497-12465577 0.0003 71_[+1]_1 chrI:9097760-9097840 0.0003 63_[+1]_9 chrV:10178321-10178401 0.00037 66_[+1]_6 chrIV:10252451-10252531 0.00039 5_[+1]_67 chrX:17513715-17513795 0.00055 58_[+1]_14 chrIV:17249820-17249900 0.00063 7_[+1]_65 chrIII:3068102-3068182 0.00063 48_[+1]_24 chrX:949637-949717 0.0007 22_[+1]_50 chrIII:6137599-6137679 0.00072 45_[+1]_27 chrX:12363178-12363258 0.00075 72_[+1] chrIV:14464282-14464362 0.00075 71_[+1]_1 chrI:5870698-5870778 0.00075 26_[+1]_46 chrV:3712681-3712761 0.00085 45_[+1]_27 chrIV:11149755-11149835 0.00094 4_[+1]_68 chrIV:15646733-15646813 0.0011 63_[+1]_9 chrX:14853941-14854021 0.0011 67_[+1]_5 chrV:14355885-14355965 0.0011 41_[+1]_31 chrI:7492063-7492143 0.0011 1_[+1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCKTCTCT width=8 seqs=52 chrIII:8130566-8130646 ( 52) TCGTCTCT 1 chrX:6742265-6742345 ( 52) TCGTCTCT 1 chrX:4389005-4389085 ( 61) TCGTCTCT 1 chrIV:11809929-11810009 ( 29) TCGTCTCT 1 chrIII:3801542-3801622 ( 46) TCTTCTCT 1 chrV:6246790-6246870 ( 50) TCTTCTCT 1 chrV:17921544-17921624 ( 65) TCTTCTCT 1 chrV:10174825-10174905 ( 41) TCTTCTCT 1 chrIV:11566310-11566390 ( 61) GCGTCTCT 1 chrX:11031451-11031531 ( 45) GCGTCTCT 1 chrI:13514360-13514440 ( 17) GCGTCTCT 1 chrI:12039935-12040015 ( 57) GCGTCTCT 1 chrI:12815954-12816034 ( 62) GCGTCTCT 1 chrIII:25637-25717 ( 60) GCGTCTCT 1 chrIII:12583650-12583730 ( 13) GCGTCTCT 1 chrV:15071472-15071552 ( 51) GCGTCTCT 1 chrX:15607599-15607679 ( 64) GCTTCTCT 1 chrV:9546975-9547055 ( 6) TCGTTTCT 1 chrII:6589051-6589131 ( 39) TCGTTTCT 1 chrX:7334543-7334623 ( 9) TCGTTTCT 1 chrX:2242970-2243050 ( 1) TCGTTTCT 1 chrI:3824383-3824463 ( 14) TCATCTCT 1 chrX:8477498-8477578 ( 23) TCATCTCT 1 chrX:2536607-2536687 ( 8) TCATCTCT 1 chrIV:14071065-14071145 ( 66) TTTTCTCT 1 chrX:13527533-13527613 ( 63) TTTTCTCT 1 chrX:10435754-10435834 ( 3) TTTTCTCT 1 chrI:1691468-1691548 ( 58) TTTTCTCT 1 chrIII:13275947-13276027 ( 41) TTTTCTCT 1 chrIII:8800423-8800503 ( 34) GTGTCTCT 1 chrI:4224945-4225025 ( 70) TCCTCTCT 1 chrV:7728303-7728383 ( 61) CCGTCTCT 1 chrX:16797012-16797092 ( 14) GCTTTTCT 1 chrI:5316274-5316354 ( 36) CCTTCTCT 1 chrV:12465497-12465577 ( 72) GTTTCTCT 1 chrI:9097760-9097840 ( 64) GTTTCTCT 1 chrV:10178321-10178401 ( 67) TCATTTCT 1 chrIV:10252451-10252531 ( 6) TTTTTTCT 1 chrX:17513715-17513795 ( 59) GCATTTCT 1 chrIV:17249820-17249900 ( 8) GTTTTTCT 1 chrIII:3068102-3068182 ( 49) CTTTCTCT 1 chrX:949637-949717 ( 23) CCCTCTCT 1 chrIII:6137599-6137679 ( 46) GCTTCTTT 1 chrX:12363178-12363258 ( 73) TTATTTCT 1 chrIV:14464282-14464362 ( 72) TTATTTCT 1 chrI:5870698-5870778 ( 27) ACGTCTCT 1 chrV:3712681-3712761 ( 46) TCGTTTTT 1 chrIV:11149755-11149835 ( 5) TCGTCTCC 1 chrIV:15646733-15646813 ( 64) CCCTTTCT 1 chrX:14853941-14854021 ( 68) TCCTCTTT 1 chrV:14355885-14355965 ( 42) GCGTTTTT 1 chrI:7492063-7492143 ( 2) CTCTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 8979 bayes= 7.95662 E= 1.6e-011 -371 -107 44 102 -1234 160 -1234 2 -91 -133 81 39 -1234 -1234 -1234 192 -1234 160 -1234 2 -1234 -1234 -1234 192 -1234 193 -1234 -178 -1234 -365 -1234 189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.6e-011 0.019231 0.115385 0.326923 0.538462 0.000000 0.730769 0.000000 0.269231 0.134615 0.096154 0.423077 0.346154 0.000000 0.000000 0.000000 1.000000 0.000000 0.730769 0.000000 0.269231 0.000000 0.000000 0.000000 1.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.019231 0.000000 0.980769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-1 regular expression -------------------------------------------------------------------------------- [TG][CT][GT]T[CT]TCT -------------------------------------------------------------------------------- Time 1.66 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAVRCAG MEME-2 width = 8 sites = 40 llr = 303 E-value = 9.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAVRCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:9341a: pos.-specific C ::1417:: probability G :a:453:8 matrix T :::::::2 bits 2.1 * * 1.9 ** * 1.6 *** * 1.4 *** * Relative 1.2 *** ** Entropy 1.0 *** ** (10.9 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGGCAG consensus CAG T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAVRCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:1873765-1873845 70 2.65e-05 GAAGTGTTAG AGACGCAG AGA chrI:8786938-8787018 35 2.65e-05 TGAGACATAG AGACGCAG ACAATCAGGG chrI:3824383-3824463 30 2.65e-05 ctctTGTTAT AGACGCAG AGATAACCCT chrX:14853941-14854021 54 2.65e-05 TAGTGTCTAG AGACGCAG ACACATTCCT chrIV:15471578-15471658 36 2.65e-05 AGAGAGTACG AGACGCAG AGATCGTTGG chrIII:3460209-3460289 27 2.65e-05 CAAAGCATGG AGACGCAG ACACGCACGA chrIII:10096718-10096798 28 2.65e-05 GAGAGAATTG AGACGCAG ATTGTTAGAT chrIV:11119246-11119326 34 2.65e-05 TGTTTGCAAG AGACGCAG ACACTGTGCG chrII:14040432-14040512 70 2.65e-05 AAAGACGTCT AGACGCAG TTG chrI:5870698-5870778 3 2.65e-05 AT AGACGCAG AAGGAAAAGT chrX:535917-535997 18 2.65e-05 AAAGAACATG AGACGCAG ATAGCTAGAG chrIV:11082954-11083034 7 4.04e-05 AACGAC AGAGACAG AAATAACACA chrIII:12583650-12583730 31 4.04e-05 GACCAGTAAG AGAGACAG GCACGTGTGG chrIV:14464282-14464362 31 5.43e-05 CGCACGGAAG AGACACAG GGAAGAGCCG chrII:5055335-5055415 27 8.14e-05 CAGATGCATA AGAGGGAG GTACGCACAG chrI:12039935-12040015 37 8.14e-05 GCCGAGAGAG AGAGGGAG AGACAAGTGC chrII:2974073-2974153 45 1.23e-04 AGGCGCAGAG AGAGAGAG GGCGCCGAGC chrIII:9619306-9619386 51 1.23e-04 AGTAAGCAAT AGAGAGAG AGAAGGAGGC chrX:15354041-15354121 66 1.23e-04 GTCTCAagtg agagagag tgagaga chrIV:11027709-11027789 6 1.23e-04 gagag agagagag agatagGAAT chrX:4222984-4223064 71 1.23e-04 TGTCATGCGG AGAGAGAG CG chrIII:13061261-13061341 1 1.37e-04 . AGACAGAG AGCGCATTAA chrIII:7498518-7498598 67 1.65e-04 GCGACGAGTG AGAGGCAT TTCGCT chrIV:5607571-5607651 29 1.94e-04 CAAGTGACAG AGAAAGAG AGACGTGTAT chrIII:8800423-8800503 15 1.94e-04 AGTTTGGAAG AGAAAGAG ACGTGCATAG chrIII:8795879-8795959 53 2.10e-04 GGTTCGCATG AGAGACAT AGAGAAGCTA chrX:17544562-17544642 38 2.10e-04 ATAGTAATTA AGAGACAT GCTTGAAAAC chrI:7658788-7658868 39 2.40e-04 TCTTCTGAGA AGAAGCAT GTGACGCTCA chrIII:5679096-5679176 73 2.71e-04 GGAGTGATAC AGAAACAT chrX:11643710-11643790 67 2.71e-04 TTAACACAAC AGAAACAT CGCGTT chrI:9097760-9097840 2 2.98e-04 G AGAGCCAG AGAGCACATA chrI:12815954-12816034 3 3.26e-04 TC AGAGAGAT GTGGGGGGCC chrII:11746977-11747057 24 3.26e-04 GGCCAGCAGT AGCGGCAG AAATTGAGAG chrIV:11566310-11566390 47 3.53e-04 AATCGCTGCG AGACCCAG CGTGCTGCGT chrX:16056561-16056641 70 5.09e-04 AAGCGAATTT AGCAGCAG GGA chrV:10961568-10961648 49 5.09e-04 GGCGGGGAAA AGAAAGAT AAAGAAAAGT chrV:10858527-10858607 30 5.09e-04 GCgctgcagc agcagcag cagTCGCTCT chrX:5729140-5729220 3 5.37e-04 ga agaagaag tagcaaggag chrV:6228574-6228654 49 5.37e-04 CATTTGAGGA AGAAGAAG AACAAGGACT chrX:13527533-13527613 5 6.31e-04 CCCA ACAGGCAG CGTTGGTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAVRCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1873765-1873845 2.6e-05 69_[+2]_3 chrI:8786938-8787018 2.6e-05 34_[+2]_38 chrI:3824383-3824463 2.6e-05 29_[+2]_43 chrX:14853941-14854021 2.6e-05 53_[+2]_19 chrIV:15471578-15471658 2.6e-05 35_[+2]_37 chrIII:3460209-3460289 2.6e-05 26_[+2]_46 chrIII:10096718-10096798 2.6e-05 27_[+2]_45 chrIV:11119246-11119326 2.6e-05 33_[+2]_39 chrII:14040432-14040512 2.6e-05 69_[+2]_3 chrI:5870698-5870778 2.6e-05 2_[+2]_70 chrX:535917-535997 2.6e-05 17_[+2]_55 chrIV:11082954-11083034 4e-05 6_[+2]_66 chrIII:12583650-12583730 4e-05 30_[+2]_42 chrIV:14464282-14464362 5.4e-05 30_[+2]_42 chrII:5055335-5055415 8.1e-05 26_[+2]_46 chrI:12039935-12040015 8.1e-05 36_[+2]_36 chrII:2974073-2974153 0.00012 44_[+2]_28 chrIII:9619306-9619386 0.00012 50_[+2]_22 chrX:15354041-15354121 0.00012 65_[+2]_7 chrIV:11027709-11027789 0.00012 5_[+2]_67 chrX:4222984-4223064 0.00012 70_[+2]_2 chrIII:13061261-13061341 0.00014 [+2]_72 chrIII:7498518-7498598 0.00017 66_[+2]_6 chrIV:5607571-5607651 0.00019 28_[+2]_44 chrIII:8800423-8800503 0.00019 14_[+2]_58 chrIII:8795879-8795959 0.00021 52_[+2]_20 chrX:17544562-17544642 0.00021 37_[+2]_35 chrI:7658788-7658868 0.00024 38_[+2]_34 chrIII:5679096-5679176 0.00027 72_[+2] chrX:11643710-11643790 0.00027 66_[+2]_6 chrI:9097760-9097840 0.0003 1_[+2]_71 chrI:12815954-12816034 0.00033 2_[+2]_70 chrII:11746977-11747057 0.00033 23_[+2]_49 chrIV:11566310-11566390 0.00035 46_[+2]_26 chrX:16056561-16056641 0.00051 69_[+2]_3 chrV:10961568-10961648 0.00051 48_[+2]_24 chrV:10858527-10858607 0.00051 29_[+2]_43 chrX:5729140-5729220 0.00054 2_[+2]_70 chrV:6228574-6228654 0.00054 48_[+2]_24 chrX:13527533-13527613 0.00063 4_[+2]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAVRCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAVRCAG width=8 seqs=40 chrI:1873765-1873845 ( 70) AGACGCAG 1 chrI:8786938-8787018 ( 35) AGACGCAG 1 chrI:3824383-3824463 ( 30) AGACGCAG 1 chrX:14853941-14854021 ( 54) AGACGCAG 1 chrIV:15471578-15471658 ( 36) AGACGCAG 1 chrIII:3460209-3460289 ( 27) AGACGCAG 1 chrIII:10096718-10096798 ( 28) AGACGCAG 1 chrIV:11119246-11119326 ( 34) AGACGCAG 1 chrII:14040432-14040512 ( 70) AGACGCAG 1 chrI:5870698-5870778 ( 3) AGACGCAG 1 chrX:535917-535997 ( 18) AGACGCAG 1 chrIV:11082954-11083034 ( 7) AGAGACAG 1 chrIII:12583650-12583730 ( 31) AGAGACAG 1 chrIV:14464282-14464362 ( 31) AGACACAG 1 chrII:5055335-5055415 ( 27) AGAGGGAG 1 chrI:12039935-12040015 ( 37) AGAGGGAG 1 chrII:2974073-2974153 ( 45) AGAGAGAG 1 chrIII:9619306-9619386 ( 51) AGAGAGAG 1 chrX:15354041-15354121 ( 66) AGAGAGAG 1 chrIV:11027709-11027789 ( 6) AGAGAGAG 1 chrX:4222984-4223064 ( 71) AGAGAGAG 1 chrIII:13061261-13061341 ( 1) AGACAGAG 1 chrIII:7498518-7498598 ( 67) AGAGGCAT 1 chrIV:5607571-5607651 ( 29) AGAAAGAG 1 chrIII:8800423-8800503 ( 15) AGAAAGAG 1 chrIII:8795879-8795959 ( 53) AGAGACAT 1 chrX:17544562-17544642 ( 38) AGAGACAT 1 chrI:7658788-7658868 ( 39) AGAAGCAT 1 chrIII:5679096-5679176 ( 73) AGAAACAT 1 chrX:11643710-11643790 ( 67) AGAAACAT 1 chrI:9097760-9097840 ( 2) AGAGCCAG 1 chrI:12815954-12816034 ( 3) AGAGAGAT 1 chrII:11746977-11747057 ( 24) AGCGGCAG 1 chrIV:11566310-11566390 ( 47) AGACCCAG 1 chrX:16056561-16056641 ( 70) AGCAGCAG 1 chrV:10961568-10961648 ( 49) AGAAAGAT 1 chrV:10858527-10858607 ( 30) AGCAGCAG 1 chrX:5729140-5729220 ( 3) AGAAGAAG 1 chrV:6228574-6228654 ( 49) AGAAGAAG 1 chrX:13527533-13527613 ( 5) ACAGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAVRCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 8979 bayes= 8.75048 E= 9.5e-008 198 -1197 -1197 -1197 -1197 -327 202 -1197 187 -169 -1197 -1197 -2 53 73 -1197 75 -227 113 -1197 -234 143 32 -1197 198 -1197 -1197 -1197 -1197 -1197 173 -41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAVRCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 9.5e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.025000 0.975000 0.000000 0.925000 0.075000 0.000000 0.000000 0.250000 0.350000 0.400000 0.000000 0.425000 0.050000 0.525000 0.000000 0.050000 0.650000 0.300000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAVRCAG MEME-2 regular expression -------------------------------------------------------------------------------- AGA[GCA][GA][CG]A[GT] -------------------------------------------------------------------------------- Time 2.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CWCTCTCT MEME-3 width = 8 sites = 10 llr = 96 E-value = 8.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWCTCTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 26:::::: pos.-specific C 8:a:a:a: probability G :1:::::: matrix T :3:a:a:a bits 2.1 * * * 1.9 ****** 1.6 ****** 1.4 ****** Relative 1.2 * ****** Entropy 1.0 * ****** (13.9 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTCTCT consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTCTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:949637-949717 37 1.61e-05 ctcttcatct cactctct GTGCGGTGTC chrX:13687165-13687245 4 1.61e-05 CCA CACTCTCT AACCTTGCCG chrX:13527533-13527613 71 1.61e-05 tcttttctct cactctct tt chrX:8477498-8477578 31 1.61e-05 TCTCATCTCT CACTCTCT GCCTTACCGT chrX:4389005-4389085 72 1.61e-05 CGTCTCTTCT CACTCTCT G chrI:5316274-5316354 44 3.31e-05 ATCCTTCTCT CTCTCTCT TTCATTCCAC chrIII:8800423-8800503 42 3.31e-05 GAGTGTCTCT CTCTCTCT CAATTTCATA chrI:13514360-13514440 9 4.99e-05 AATGCGTC AACTCTCT GCGTCTCTAC chrX:17513715-17513795 1 6.53e-05 . CGCTCTCT CAATGTTCAG chrI:3824383-3824463 6 8.30e-05 tctct atctctct tcatctctct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTCTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:949637-949717 1.6e-05 36_[+3]_36 chrX:13687165-13687245 1.6e-05 3_[+3]_69 chrX:13527533-13527613 1.6e-05 70_[+3]_2 chrX:8477498-8477578 1.6e-05 30_[+3]_42 chrX:4389005-4389085 1.6e-05 71_[+3]_1 chrI:5316274-5316354 3.3e-05 43_[+3]_29 chrIII:8800423-8800503 3.3e-05 41_[+3]_31 chrI:13514360-13514440 5e-05 8_[+3]_64 chrX:17513715-17513795 6.5e-05 [+3]_72 chrI:3824383-3824463 8.3e-05 5_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTCTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWCTCTCT width=8 seqs=10 chrX:949637-949717 ( 37) CACTCTCT 1 chrX:13687165-13687245 ( 4) CACTCTCT 1 chrX:13527533-13527613 ( 71) CACTCTCT 1 chrX:8477498-8477578 ( 31) CACTCTCT 1 chrX:4389005-4389085 ( 72) CACTCTCT 1 chrI:5316274-5316354 ( 44) CTCTCTCT 1 chrIII:8800423-8800503 ( 42) CTCTCTCT 1 chrI:13514360-13514440 ( 9) AACTCTCT 1 chrX:17513715-17513795 ( 1) CGCTCTCT 1 chrI:3824383-3824463 ( 6) ATCTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTCTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 8979 bayes= 10.0606 E= 8.6e+003 -34 173 -997 -997 125 -997 -126 18 -997 205 -997 -997 -997 -997 -997 191 -997 205 -997 -997 -997 -997 -997 191 -997 205 -997 -997 -997 -997 -997 191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTCTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 8.6e+003 0.200000 0.800000 0.000000 0.000000 0.600000 0.000000 0.100000 0.300000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCTCTCT MEME-3 regular expression -------------------------------------------------------------------------------- [CA][AT]CTCTCT -------------------------------------------------------------------------------- Time 4.20 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGYGG MEME-4 width = 8 sites = 2 llr = 21 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGYGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::5:: probability G aaaaa:aa matrix T :::::5:: bits 2.1 ***** ** 1.9 ***** ** 1.6 ***** ** 1.4 ***** ** Relative 1.2 ***** ** Entropy 1.0 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGCGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGYGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14566154-14566234 4 1.14e-05 TGT GGGGGCGG AGCTAAAATT chrV:6228574-6228654 3 2.39e-05 AA GGGGGTGG TTGGACCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGYGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14566154-14566234 1.1e-05 3_[+4]_69 chrV:6228574-6228654 2.4e-05 2_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGYGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGYGG width=8 seqs=2 chrI:14566154-14566234 ( 4) GGGGGCGG 1 chrV:6228574-6228654 ( 3) GGGGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGYGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 8979 bayes= 12.132 E= 2.9e+004 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 105 -765 91 -765 -765 205 -765 -765 -765 205 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGYGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGYGG MEME-4 regular expression -------------------------------------------------------------------------------- GGGGG[CT]GG -------------------------------------------------------------------------------- Time 9.06 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGCGG MEME-5 width = 8 sites = 2 llr = 23 E-value = 9.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a::a:: probability G aa:aa:aa matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:17857881-17857961 1 1.15e-05 . GGCGGCGG AAATGCGAAA chrII:11746977-11747057 47 1.15e-05 GAGAGCATTC GGCGGCGG GGCCCCGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:17857881-17857961 1.1e-05 [+5]_72 chrII:11746977-11747057 1.1e-05 46_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCGG width=8 seqs=2 chrV:17857881-17857961 ( 1) GGCGGCGG 1 chrII:11746977-11747057 ( 47) GGCGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 8979 bayes= 12.132 E= 9.1e+003 -765 -765 205 -765 -765 -765 205 -765 -765 204 -765 -765 -765 -765 205 -765 -765 -765 205 -765 -765 204 -765 -765 -765 -765 205 -765 -765 -765 205 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-5 regular expression -------------------------------------------------------------------------------- GGCGGCGG -------------------------------------------------------------------------------- Time 10.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:535917-535997 2.45e-01 17_[+2(2.65e-05)]_55 chrIV:11147141-11147221 6.62e-01 80 chrIV:11071046-11071126 9.99e-01 80 chrIII:13275947-13276027 2.15e-02 44_[+3(3.31e-05)]_28 chrV:9343688-9343768 9.82e-01 80 chrV:10858527-10858607 1.94e-01 80 chrIV:11809929-11810009 1.01e-01 28_[+1(1.68e-05)]_44 chrX:2536607-2536687 1.26e-02 11_[+3(3.31e-05)]_6_[+3(3.31e-05)]_\ 47 chrX:11603717-11603797 5.02e-01 80 chrV:10712248-10712328 5.34e-01 80 chrIII:6137599-6137679 4.98e-01 80 chrI:5874501-5874581 9.18e-01 80 chrV:20790884-20790964 9.88e-01 80 chrV:15071472-15071552 5.85e-02 50_[+1(5.07e-05)]_22 chrIV:1070464-1070544 8.60e-01 80 chrX:11643710-11643790 3.97e-01 80 chrI:14566154-14566234 2.26e-04 3_[+4(1.14e-05)]_69 chrV:7728303-7728383 1.38e-02 80 chrIV:11149755-11149835 6.44e-01 80 chrX:2364891-2364971 8.61e-01 80 chrI:4224945-4225025 1.37e-01 80 chrI:7658788-7658868 6.45e-02 80 chrIII:12583650-12583730 7.61e-03 12_[+1(5.07e-05)]_10_[+2(4.04e-05)]_\ 42 chrIII:10284371-10284451 2.59e-01 80 chrI:12548027-12548107 8.55e-02 80 chrI:2878694-2878774 9.99e-01 80 chrX:4222984-4223064 4.03e-01 80 chrIII:25637-25717 1.96e-02 59_[+1(5.07e-05)]_13 chrI:2291182-2291262 8.89e-01 80 chrV:6228574-6228654 8.58e-03 2_[+4(2.39e-05)]_70 chrI:5906178-5906258 9.94e-01 80 chrIV:11027709-11027789 4.89e-01 80 chrV:18722232-18722312 6.98e-01 80 chrV:10178321-10178401 5.33e-01 80 chrX:17513715-17513795 3.30e-02 [+3(6.53e-05)]_72 chrX:4389005-4389085 1.05e-04 60_[+1(1.68e-05)]_3_[+3(1.61e-05)]_\ 1 chrI:5870698-5870778 1.35e-02 2_[+2(2.65e-05)]_70 chrI:1691468-1691548 6.56e-02 80 chrX:1909613-1909693 3.16e-01 80 chrIII:6352537-6352617 6.50e-01 80 chrX:10435754-10435834 9.83e-02 80 chrX:8477498-8477578 1.89e-03 30_[+3(1.61e-05)]_42 chrV:10174825-10174905 1.93e-02 40_[+1(3.54e-05)]_32 chrX:1389537-1389617 7.26e-01 80 chrIII:8800423-8800503 1.29e-03 37_[+3(3.31e-05)]_35 chrX:13527533-13527613 4.10e-04 70_[+3(1.61e-05)]_2 chrV:3712681-3712761 7.94e-01 80 chrX:17544562-17544642 5.30e-01 80 chrI:7492063-7492143 9.04e-03 1_[+3(3.31e-05)]_71 chrI:8426832-8426912 4.50e-01 80 chrII:14040432-14040512 1.83e-03 69_[+2(2.65e-05)]_3 chrX:12889903-12889983 9.73e-01 80 chrX:15607599-15607679 1.85e-01 63_[+1(6.75e-05)]_9 chrIV:14464282-14464362 2.34e-02 30_[+2(5.43e-05)]_42 chrII:10552093-10552173 1.85e-01 80 chrII:8185146-8185226 3.91e-01 80 chrIV:7845623-7845703 1.21e-01 80 chrV:17921544-17921624 3.85e-02 64_[+1(3.54e-05)]_8 chrV:10961568-10961648 6.86e-02 80 chrIV:11119246-11119326 7.84e-03 33_[+2(2.65e-05)]_39 chrIII:3068102-3068182 5.55e-03 80 chrX:2242970-2243050 1.20e-01 80 chrX:13687165-13687245 1.28e-02 3_[+3(1.61e-05)]_69 chrIV:14071065-14071145 1.71e-01 80 chrX:5729140-5729220 1.03e-01 80 chrII:11746977-11747057 7.45e-04 46_[+5(1.15e-05)]_26 chrV:17857881-17857961 9.69e-03 [+5(1.15e-05)]_72 chrIV:10252451-10252531 7.89e-02 80 chrI:9097760-9097840 1.99e-02 80 chrIV:5607571-5607651 5.25e-01 80 chrIII:10096718-10096798 5.91e-02 27_[+2(2.65e-05)]_45 chrV:12465497-12465577 7.30e-02 80 chrV:6246790-6246870 4.83e-02 49_[+1(3.54e-05)]_23 chrX:949637-949717 1.39e-02 36_[+3(1.61e-05)]_36 chrX:6742265-6742345 5.36e-02 51_[+1(1.68e-05)]_21 chrIII:3460209-3460289 1.65e-01 26_[+2(2.65e-05)]_46 chrX:10637590-10637670 3.65e-01 80 chrX:1446974-1447054 8.13e-01 80 chrI:5316274-5316354 4.15e-03 39_[+3(3.31e-05)]_33 chrIII:8130566-8130646 8.05e-02 51_[+1(1.68e-05)]_21 chrX:15354041-15354121 5.04e-03 80 chrI:12815954-12816034 7.45e-04 61_[+1(5.07e-05)]_11 chrIV:15471578-15471658 3.09e-02 35_[+2(2.65e-05)]_37 chrIII:3801542-3801622 3.25e-02 45_[+1(3.54e-05)]_27 chrX:12018099-12018179 2.38e-02 80 chrIV:11082954-11083034 2.55e-01 6_[+2(4.04e-05)]_66 chrV:14355885-14355965 1.81e-01 80 chrX:16056561-16056641 3.79e-01 80 chrII:11635275-11635355 7.30e-01 80 chrIII:13061261-13061341 7.95e-03 80 chrX:7334543-7334623 1.92e-01 80 chrX:14853941-14854021 1.19e-02 53_[+2(2.65e-05)]_19 chrI:12039935-12040015 1.32e-03 36_[+2(8.14e-05)]_12_[+1(5.07e-05)]_\ 16 chrX:1345028-1345108 8.19e-01 80 chrX:12363178-12363258 3.11e-01 80 chrI:9163481-9163561 9.59e-01 80 chrII:6589051-6589131 3.62e-02 80 chrX:16797012-16797092 2.79e-01 80 chrX:13969573-13969653 9.95e-01 80 chrI:535348-535428 7.17e-01 80 chrI:8816524-8816604 9.63e-01 80 chrII:5055335-5055415 1.04e-01 26_[+2(8.14e-05)]_46 chrIII:7498518-7498598 1.04e-01 80 chrIII:9619306-9619386 2.51e-02 80 chrI:13514360-13514440 6.10e-05 8_[+3(4.99e-05)]_[+1(5.07e-05)]_56 chrIII:9668087-9668167 2.46e-01 80 chrX:11031451-11031531 9.62e-02 44_[+1(5.07e-05)]_28 chrIV:12391246-12391326 9.95e-01 80 chrIV:15646733-15646813 4.39e-01 80 chrV:10715949-10716029 9.74e-01 80 chrIV:17249820-17249900 2.39e-01 80 chrV:9546975-9547055 1.99e-01 80 chrIV:11566310-11566390 5.54e-03 60_[+1(5.07e-05)]_12 chrIII:1923725-1923805 7.75e-01 80 chrI:3824383-3824463 3.76e-04 5_[+3(8.30e-05)]_2_[+3(8.30e-05)]_6_\ [+2(2.65e-05)]_43 chrX:5984783-5984863 9.32e-01 80 chrIII:5679096-5679176 8.32e-02 80 chrII:4851810-4851890 5.65e-01 80 chrII:2974073-2974153 1.10e-01 80 chrIII:8795879-8795959 4.04e-01 80 chrI:8786938-8787018 2.30e-01 34_[+2(2.65e-05)]_38 chrX:14708348-14708428 8.87e-02 80 chrI:1873765-1873845 1.46e-01 69_[+2(2.65e-05)]_3 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************