******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/xnd-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:4004743-4004823 1.0000 80 chrV:16950185-16950265 1.0000 80 chrIII:3127346-3127426 1.0000 80 chrV:8521205-8521285 1.0000 80 chrI:9127088-9127168 1.0000 80 chrIII:6283206-6283286 1.0000 80 chrV:11921819-11921899 1.0000 80 chrIV:11498332-11498412 1.0000 80 chrV:4552545-4552625 1.0000 80 chrV:18137840-18137920 1.0000 80 chrIV:4188073-4188153 1.0000 80 chrIV:8205809-8205889 1.0000 80 chrI:13368276-13368356 1.0000 80 chrIV:11124831-11124911 1.0000 80 chrI:7244867-7244947 1.0000 80 chrII:9289294-9289374 1.0000 80 chrI:8412611-8412691 1.0000 80 chrIII:4987811-4987891 1.0000 80 chrII:3808788-3808868 1.0000 80 chrV:5514130-5514210 1.0000 80 chrX:182401-182481 1.0000 80 chrII:9842290-9842370 1.0000 80 chrI:12539648-12539728 1.0000 80 chrI:5859789-5859869 1.0000 80 chrV:7981136-7981216 1.0000 80 chrIV:14455262-14455342 1.0000 80 chrIV:10546732-10546812 1.0000 80 chrI:1977909-1977989 1.0000 80 chrII:7690575-7690655 1.0000 80 chrV:4195440-4195520 1.0000 80 chrIII:12880873-12880953 1.0000 80 chrII:6860186-6860266 1.0000 80 chrI:2980497-2980577 1.0000 80 chrII:3934246-3934326 1.0000 80 chrIV:12618114-12618194 1.0000 80 chrIII:2461218-2461298 1.0000 80 chrIV:5486447-5486527 1.0000 80 chrV:6268131-6268211 1.0000 80 chrIV:1420765-1420845 1.0000 80 chrII:11536652-11536732 1.0000 80 chrI:7352191-7352271 1.0000 80 chrII:1153423-1153503 1.0000 80 chrIII:2782013-2782093 1.0000 80 chrII:4566392-4566472 1.0000 80 chrIV:2223285-2223365 1.0000 80 chrI:6368122-6368202 1.0000 80 chrII:437435-437515 1.0000 80 chrV:13193811-13193891 1.0000 80 chrV:19771015-19771095 1.0000 80 chrIV:4751974-4752054 1.0000 80 chrV:19125440-19125520 1.0000 80 chrIV:11298313-11298393 1.0000 80 chrI:398493-398573 1.0000 80 chrIII:5047886-5047966 1.0000 80 chrV:16747161-16747241 1.0000 80 chrII:3546657-3546737 1.0000 80 chrII:2815172-2815252 1.0000 80 chrIII:3534343-3534423 1.0000 80 chrV:4692729-4692809 1.0000 80 chrIII:4891148-4891228 1.0000 80 chrI:8309277-8309357 1.0000 80 chrI:10798348-10798428 1.0000 80 chrII:4222560-4222640 1.0000 80 chrI:4653268-4653348 1.0000 80 chrIII:8831514-8831594 1.0000 80 chrIV:15029708-15029788 1.0000 80 chrI:2004017-2004097 1.0000 80 chrIV:10858445-10858525 1.0000 80 chrII:4460431-4460511 1.0000 80 chrIII:2101425-2101505 1.0000 80 chrIV:11038358-11038438 1.0000 80 chrX:12283066-12283146 1.0000 80 chrV:20476624-20476704 1.0000 80 chrIV:10242588-10242668 1.0000 80 chrIII:311348-311428 1.0000 80 chrI:12483762-12483842 1.0000 80 chrV:14293995-14294075 1.0000 80 chrV:5666478-5666558 1.0000 80 chrII:4236144-4236224 1.0000 80 chrI:180060-180140 1.0000 80 chrIII:4439759-4439839 1.0000 80 chrV:19916159-19916239 1.0000 80 chrI:7984830-7984910 1.0000 80 chrIV:13104907-13104987 1.0000 80 chrII:13575203-13575283 1.0000 80 chrI:5511855-5511935 1.0000 80 chrII:7098746-7098826 1.0000 80 chrIV:6347949-6348029 1.0000 80 chrII:10863429-10863509 1.0000 80 chrII:9319201-9319281 1.0000 80 chrIV:1051931-1052011 1.0000 80 chrI:6758766-6758846 1.0000 80 chrIV:13311481-13311561 1.0000 80 chrV:4963687-4963767 1.0000 80 chrI:6089446-6089526 1.0000 80 chrV:17924536-17924616 1.0000 80 chrV:3204594-3204674 1.0000 80 chrV:4637336-4637416 1.0000 80 chrV:14594304-14594384 1.0000 80 chrI:12647109-12647189 1.0000 80 chrV:11787906-11787986 1.0000 80 chrI:715957-716037 1.0000 80 chrII:7065556-7065636 1.0000 80 chrI:4210431-4210511 1.0000 80 chrV:969204-969284 1.0000 80 chrI:2586783-2586863 1.0000 80 chrIII:13561376-13561456 1.0000 80 chrV:16059023-16059103 1.0000 80 chrIV:12805743-12805823 1.0000 80 chrV:13009401-13009481 1.0000 80 chrIII:3471128-3471208 1.0000 80 chrIII:12575539-12575619 1.0000 80 chrI:1446181-1446261 1.0000 80 chrI:6954256-6954336 1.0000 80 chrII:6782119-6782199 1.0000 80 chrII:5497733-5497813 1.0000 80 chrIII:11195313-11195393 1.0000 80 chrI:9544417-9544497 1.0000 80 chrV:13550097-13550177 1.0000 80 chrV:11917341-11917421 1.0000 80 chrIV:10985710-10985790 1.0000 80 chrV:5046730-5046810 1.0000 80 chrV:4374742-4374822 1.0000 80 chrI:10808354-10808434 1.0000 80 chrIII:10442727-10442807 1.0000 80 chrI:7985083-7985163 1.0000 80 chrV:6702868-6702948 1.0000 80 chrII:11241636-11241716 1.0000 80 chrV:15065952-15066032 1.0000 80 chrIII:6140945-6141025 1.0000 80 chrI:4114600-4114680 1.0000 80 chrIII:10330804-10330884 1.0000 80 chrV:10049611-10049691 1.0000 80 chrIV:12047714-12047794 1.0000 80 chrV:16055188-16055268 1.0000 80 chrV:17658984-17659064 1.0000 80 chrV:2691140-2691220 1.0000 80 chrIV:11470371-11470451 1.0000 80 chrII:12808928-12809008 1.0000 80 chrIII:5209153-5209233 1.0000 80 chrI:13839345-13839425 1.0000 80 chrIII:10469820-10469900 1.0000 80 chrI:10881232-10881312 1.0000 80 chrII:12036242-12036322 1.0000 80 chrII:13130707-13130787 1.0000 80 chrIV:11142951-11143031 1.0000 80 chrII:4525338-4525418 1.0000 80 chrIII:8492115-8492195 1.0000 80 chrI:6007763-6007843 1.0000 80 chrII:8127957-8128037 1.0000 80 chrI:7914740-7914820 1.0000 80 chrII:13695763-13695843 1.0000 80 chrIV:183702-183782 1.0000 80 chrV:8355603-8355683 1.0000 80 chrV:9993216-9993296 1.0000 80 chrI:6573829-6573909 1.0000 80 chrIII:8429180-8429260 1.0000 80 chrII:3554800-3554880 1.0000 80 chrII:14778237-14778317 1.0000 80 chrIV:10157179-10157259 1.0000 80 chrIII:12457347-12457427 1.0000 80 chrIV:2276734-2276814 1.0000 80 chrII:14125948-14126028 1.0000 80 chrII:5465904-5465984 1.0000 80 chrV:7877234-7877314 1.0000 80 chrIII:9566129-9566209 1.0000 80 chrII:220788-220868 1.0000 80 chrIV:4667980-4668060 1.0000 80 chrV:7199268-7199348 1.0000 80 chrIII:11534851-11534931 1.0000 80 chrII:8253323-8253403 1.0000 80 chrI:1445979-1446059 1.0000 80 chrIII:3040869-3040949 1.0000 80 chrII:13043633-13043713 1.0000 80 chrII:8270204-8270284 1.0000 80 chrIV:12127237-12127317 1.0000 80 chrIII:13641033-13641113 1.0000 80 chrIII:5406443-5406523 1.0000 80 chrII:4230940-4231020 1.0000 80 chrV:9985394-9985474 1.0000 80 chrIII:13104565-13104645 1.0000 80 chrIV:829844-829924 1.0000 80 chrI:5411742-5411822 1.0000 80 chrII:1501110-1501190 1.0000 80 chrII:4604870-4604950 1.0000 80 chrII:4320622-4320702 1.0000 80 chrII:7025068-7025148 1.0000 80 chrIII:5988622-5988702 1.0000 80 chrIV:1708159-1708239 1.0000 80 chrI:3212676-3212756 1.0000 80 chrII:4301156-4301236 1.0000 80 chrII:11974199-11974279 1.0000 80 chrI:4608501-4608581 1.0000 80 chrIV:2914721-2914801 1.0000 80 chrII:7758914-7758994 1.0000 80 chrII:4375075-4375155 1.0000 80 chrI:2905767-2905847 1.0000 80 chrII:13260706-13260786 1.0000 80 chrI:10349875-10349955 1.0000 80 chrI:3105695-3105775 1.0000 80 chrIII:5958689-5958769 1.0000 80 chrV:9784368-9784448 1.0000 80 chrII:4753270-4753350 1.0000 80 chrI:9274753-9274833 1.0000 80 chrI:8484144-8484224 1.0000 80 chrIV:12445673-12445753 1.0000 80 chrIV:2783344-2783424 1.0000 80 chrII:10853045-10853125 1.0000 80 chrII:10783707-10783787 1.0000 80 chrIII:2790710-2790790 1.0000 80 chrV:16746392-16746472 1.0000 80 chrV:3892492-3892572 1.0000 80 chrII:1306715-1306795 1.0000 80 chrII:4888640-4888720 1.0000 80 chrV:8057963-8058043 1.0000 80 chrIII:10870325-10870405 1.0000 80 chrIV:984237-984317 1.0000 80 chrIII:8479730-8479810 1.0000 80 chrIII:9504513-9504593 1.0000 80 chrI:3035615-3035695 1.0000 80 chrI:2156652-2156732 1.0000 80 chrII:14310544-14310624 1.0000 80 chrII:13732270-13732350 1.0000 80 chrII:6683084-6683164 1.0000 80 chrI:6003096-6003176 1.0000 80 chrV:2589998-2590078 1.0000 80 chrIII:12316719-12316799 1.0000 80 chrI:8531586-8531666 1.0000 80 chrIV:11660078-11660158 1.0000 80 chrX:1397856-1397936 1.0000 80 chrI:502609-502689 1.0000 80 chrIV:3212085-3212165 1.0000 80 chrI:1360210-1360290 1.0000 80 chrIII:13755861-13755941 1.0000 80 chrIV:13154793-13154873 1.0000 80 chrII:9647605-9647685 1.0000 80 chrIV:12031178-12031258 1.0000 80 chrV:7622199-7622279 1.0000 80 chrI:2432304-2432384 1.0000 80 chrIII:5543203-5543283 1.0000 80 chrIII:8852831-8852911 1.0000 80 chrII:11824075-11824155 1.0000 80 chrII:4226743-4226823 1.0000 80 chrV:1701744-1701824 1.0000 80 chrIII:3844296-3844376 1.0000 80 chrII:7394459-7394539 1.0000 80 chrV:5203740-5203820 1.0000 80 chrIII:2966089-2966169 1.0000 80 chrV:13660274-13660354 1.0000 80 chrIII:8618733-8618813 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_xnd-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/xnd-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.298 C 0.202 G 0.197 T 0.302 Background letter frequencies (from file dataset with add-one prior applied): A 0.298 C 0.202 G 0.197 T 0.302 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCGCCTT MEME-1 width = 8 sites = 78 llr = 736 E-value = 5.7e-089 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGCCTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C 1:71aa:: probability G :a:7:::: matrix T 9:31::aa bits 2.3 * * 2.1 * ** 1.9 * ** 1.6 * **** Relative 1.4 ** **** Entropy 1.2 *** **** (13.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCGCCTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7394459-7394539 55 8.81e-06 ATTTGGTGTG TGCGCCTT TAAGATTACT chrII:4226743-4226823 56 8.81e-06 AAGTGGGCCG TGCGCCTT TGAAGATACG chrII:9647605-9647685 56 8.81e-06 CTTTTAGTAC TGCGCCTT TAAATTACTG chrIV:13154793-13154873 41 8.81e-06 GAAATCGGTA TGCGCCTT GTAGTTACGG chrI:1360210-1360290 59 8.81e-06 CATTCTGTAA TGCGCCTT TAAGGTTTAT chrI:8531586-8531666 49 8.81e-06 TATGATGGCA TGCGCCTT CGAAATACGG chrI:6003096-6003176 73 8.81e-06 CAAAATGGCA TGCGCCTT chrII:10853045-10853125 39 8.81e-06 ATTTCAGATA TGCGCCTT TAAGAACAGG chrIV:2783344-2783424 73 8.81e-06 ATTCCTCATA TGCGCCTT chrII:7758914-7758994 46 8.81e-06 TTTTTGTGTA TGCGCCTT TAAAATTACT chrI:3212676-3212756 51 8.81e-06 CTTTTTAGCA TGCGCCTT TAAAATATTA chrII:7025068-7025148 36 8.81e-06 AATCATTGCA TGCGCCTT GATTTACCGT chrII:1501110-1501190 48 8.81e-06 AAATCTGCAA TGCGCCTT TAAAGTGTTA chrIV:829844-829924 44 8.81e-06 AAATGAGCTA TGCGCCTT TAAGTTCTAC chrV:7199268-7199348 40 8.81e-06 AAAATTGCAA TGCGCCTT TAAGGCTACA chrIV:4667980-4668060 48 8.81e-06 CAACTATGTA TGCGCCTT TAAGCTAGGG chrIII:9566129-9566209 55 8.81e-06 GAGTATGCAA TGCGCCTT TAATTTTGCT chrI:6573829-6573909 54 8.81e-06 aaaaaatccg tgcgcctt taGAAACGCA chrII:8127957-8128037 61 8.81e-06 aataaacctg tgcgcctt taagaaggca chrII:12036242-12036322 41 8.81e-06 taaaaagatg tgcgcctt taaagattac chrIII:5209153-5209233 39 8.81e-06 cgaaaaggtg tgcgcctt taaaggttac chrIV:11470371-11470451 22 8.81e-06 TGGTTGGGAA TGCGCCTT AGTTACCGTA chrIV:12047714-12047794 52 8.81e-06 ATTTGGCACT TGCGCCTT TAAGAAACTC chrIII:10442727-10442807 36 8.81e-06 ATTTAATGTC TGCGCCTT TAAAGAATAC chrIII:13561376-13561456 67 8.81e-06 CTTTGAGCGA TGCGCCTT TAAAGT chrI:2586783-2586863 59 8.81e-06 AGGGaaggcg tgcgcctt taaaggatta chrIV:1051931-1052011 3 8.81e-06 GA TGCGCCTT TAAGCTGGCG chrII:9319201-9319281 68 8.81e-06 TTCTGACTCT TGCGCCTT GAAAA chrII:10863429-10863509 33 8.81e-06 ATTAAAGGTA TGCGCCTT TAATTGAAGA chrI:180060-180140 29 8.81e-06 ACATTACCTA TGCGCCTT TAAAGCTACC chrIV:11038358-11038438 70 8.81e-06 GTATTCTAGA TGCGCCTT TAA chrI:4653268-4653348 37 8.81e-06 AATCGAGGCA TGCGCCTT TAAAAACTAC chrII:4222560-4222640 10 8.81e-06 CCACGATTA TGCGCCTT TAAATAAGCT chrIII:3534343-3534423 61 8.81e-06 GAAAGGTGCA TGCGCCTT TAAATGTGGG chrI:398493-398573 59 8.81e-06 AAAGAAGTCG TGCGCCTT TAAACTGTGT chrIV:2223285-2223365 38 8.81e-06 TTTTGGAGTA TGCGCCTT GGAGACTACG chrIII:2461218-2461298 24 8.81e-06 ATTCGAGTGC TGCGCCTT TAAAGAGTAC chrI:2980497-2980577 63 8.81e-06 AAATGACCCT TGCGCCTT TAAAATATTA chrIV:14455262-14455342 46 8.81e-06 CTAAAGGCGA TGCGCCTT TAAGCTGGCG chrV:7981136-7981216 59 8.81e-06 AAATAATACA TGCGCCTT TGAAGGAGTA chrI:12539648-12539728 73 8.81e-06 AGTTCTGCCA TGCGCCTT chrV:5514130-5514210 61 8.81e-06 GCGTTAGGTA TGCGCCTT TAAGTTATAC chrIV:8205809-8205889 24 8.81e-06 aaaaattgca tgcgcctt taaggttacg chrIII:2790710-2790790 29 2.20e-05 aaaacgtgtg tgtgcctt taaagagtac chrII:13260706-13260786 65 2.20e-05 ACGTTGTGTG TGTGCCTT TAAAATTA chrI:8412611-8412691 44 2.20e-05 TGAATTGTTG TGTGCCTT TAAAACTACC chrIV:11498332-11498412 48 2.20e-05 ATATTCAGTG TGTGCCTT TAAAATTGAC chrV:8521205-8521285 56 2.20e-05 ATTTTTCTAC TGTGCCTT TACTATTACC chrIII:3471128-3471208 73 3.10e-05 ATTTTACTTG TGCCCCTT chrI:6954256-6954336 43 3.69e-05 TTTTCATGTA CGCGCCTT TAACAGATTA chrIV:12805743-12805823 34 3.69e-05 CAAAATCTTA CGCGCCTT TAAATTGACC chrV:3204594-3204674 66 3.69e-05 TTTTGAGATC CGCGCCTT TTTACTA chrIII:4439759-4439839 33 5.02e-05 CCGACATGCA TGCACCTT TAAGTGTGAC chrV:13193811-13193891 42 5.02e-05 GCTGACGTAT TGCACCTT TGAAAGTTAC chrV:1701744-1701824 58 6.37e-05 CAAAAATGCG TGCTCCTT TAAATGTGGA chrV:4195440-4195520 7 6.37e-05 TTTTTT TGCTCCTT AAATTGAAAC chrIII:5988622-5988702 58 7.73e-05 ATTTTCCTCA TGTCCCTT TTATTTTTAC chrII:4320622-4320702 58 7.73e-05 AATTATACCA TGTCCCTT GAAGCGGTAC chrIV:12127237-12127317 49 7.73e-05 GAAAGGAGTG TGTCCCTT TAAGGTAATT chrI:6758766-6758846 40 7.73e-05 TTATTAGTCA TGTCCCTT TAAAGTATAC chrII:7098746-7098826 25 7.73e-05 GAAGTGTGTG TGTCCCTT TAAAAGATGA chrIII:8831514-8831594 39 7.73e-05 AGTTGAGGCA TGTCCCTT TAATACAGTA chrII:3934246-3934326 69 7.73e-05 TATTCCGCGC TGTCCCTT TAGA chrV:18137840-18137920 50 7.73e-05 GATATCTGTG TGTCCCTT TAAATTTACA chrIII:8429180-8429260 44 9.80e-05 ACACAATGTC TGCGCCTC TCATCTCTCT chrI:10881232-10881312 61 9.80e-05 CATGCAAGCG CGCCCCTT TGAGAAATTT chrI:5411742-5411822 68 1.18e-04 taattccatg tgtacctt taaGT chrI:13839345-13839425 52 1.18e-04 aattttgcta tgtacctt taatTTTGCC chrI:8309277-8309357 54 1.18e-04 AATCTGCATA TGTACCTT TAATTTACTA chrII:3546657-3546737 18 1.18e-04 ACTTCCTCCA TGTACCTT TAAAGAAGGC chrII:8270204-8270284 30 1.47e-04 ATTTTATTTA TGTTCCTT TGTTACAAAA chrIII:8492115-8492195 47 1.47e-04 TAAAGTAGAA TGTTCCTT TAAACTTCGG chrIII:11195313-11195393 11 1.47e-04 AATTACTGCA TGTTCCTT TAAAACTACA chrV:4552545-4552625 42 1.47e-04 TAAACAAGTA AGCGCCTT TGTTAAATGG chrIII:11534851-11534931 47 1.56e-04 CGCCGCGATA TGCGCCAT TTTGCTGAAA chrI:7984830-7984910 36 1.69e-04 TTGTCGGCCG TGAGCCTT CAATATCGTA chrII:4460431-4460511 40 1.82e-04 CTTCAATGTA TGCGTCTT CAAGACTACG chrIII:4891148-4891228 52 2.17e-04 CGAGCAAGAA CGTCCCTT TAACAATACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7394459-7394539 8.8e-06 54_[+1]_18 chrII:4226743-4226823 8.8e-06 55_[+1]_17 chrII:9647605-9647685 8.8e-06 55_[+1]_17 chrIV:13154793-13154873 8.8e-06 40_[+1]_32 chrI:1360210-1360290 8.8e-06 58_[+1]_14 chrI:8531586-8531666 8.8e-06 48_[+1]_24 chrI:6003096-6003176 8.8e-06 72_[+1] chrII:10853045-10853125 8.8e-06 38_[+1]_34 chrIV:2783344-2783424 8.8e-06 72_[+1] chrII:7758914-7758994 8.8e-06 45_[+1]_27 chrI:3212676-3212756 8.8e-06 50_[+1]_22 chrII:7025068-7025148 8.8e-06 35_[+1]_37 chrII:1501110-1501190 8.8e-06 47_[+1]_25 chrIV:829844-829924 8.8e-06 43_[+1]_29 chrV:7199268-7199348 8.8e-06 39_[+1]_33 chrIV:4667980-4668060 8.8e-06 47_[+1]_25 chrIII:9566129-9566209 8.8e-06 54_[+1]_18 chrI:6573829-6573909 8.8e-06 53_[+1]_19 chrII:8127957-8128037 8.8e-06 60_[+1]_12 chrII:12036242-12036322 8.8e-06 40_[+1]_32 chrIII:5209153-5209233 8.8e-06 38_[+1]_34 chrIV:11470371-11470451 8.8e-06 21_[+1]_51 chrIV:12047714-12047794 8.8e-06 51_[+1]_21 chrIII:10442727-10442807 8.8e-06 35_[+1]_37 chrIII:13561376-13561456 8.8e-06 66_[+1]_6 chrI:2586783-2586863 8.8e-06 58_[+1]_14 chrIV:1051931-1052011 8.8e-06 2_[+1]_70 chrII:9319201-9319281 8.8e-06 67_[+1]_5 chrII:10863429-10863509 8.8e-06 32_[+1]_40 chrI:180060-180140 8.8e-06 28_[+1]_44 chrIV:11038358-11038438 8.8e-06 69_[+1]_3 chrI:4653268-4653348 8.8e-06 36_[+1]_36 chrII:4222560-4222640 8.8e-06 9_[+1]_63 chrIII:3534343-3534423 8.8e-06 60_[+1]_12 chrI:398493-398573 8.8e-06 58_[+1]_14 chrIV:2223285-2223365 8.8e-06 37_[+1]_35 chrIII:2461218-2461298 8.8e-06 23_[+1]_49 chrI:2980497-2980577 8.8e-06 62_[+1]_10 chrIV:14455262-14455342 8.8e-06 45_[+1]_27 chrV:7981136-7981216 8.8e-06 58_[+1]_14 chrI:12539648-12539728 8.8e-06 72_[+1] chrV:5514130-5514210 8.8e-06 60_[+1]_12 chrIV:8205809-8205889 8.8e-06 23_[+1]_49 chrIII:2790710-2790790 2.2e-05 28_[+1]_44 chrII:13260706-13260786 2.2e-05 64_[+1]_8 chrI:8412611-8412691 2.2e-05 43_[+1]_29 chrIV:11498332-11498412 2.2e-05 47_[+1]_25 chrV:8521205-8521285 2.2e-05 55_[+1]_17 chrIII:3471128-3471208 3.1e-05 72_[+1] chrI:6954256-6954336 3.7e-05 42_[+1]_30 chrIV:12805743-12805823 3.7e-05 33_[+1]_39 chrV:3204594-3204674 3.7e-05 65_[+1]_7 chrIII:4439759-4439839 5e-05 32_[+1]_40 chrV:13193811-13193891 5e-05 41_[+1]_31 chrV:1701744-1701824 6.4e-05 57_[+1]_15 chrV:4195440-4195520 6.4e-05 6_[+1]_66 chrIII:5988622-5988702 7.7e-05 57_[+1]_15 chrII:4320622-4320702 7.7e-05 57_[+1]_15 chrIV:12127237-12127317 7.7e-05 48_[+1]_24 chrI:6758766-6758846 7.7e-05 39_[+1]_33 chrII:7098746-7098826 7.7e-05 24_[+1]_48 chrIII:8831514-8831594 7.7e-05 38_[+1]_34 chrII:3934246-3934326 7.7e-05 68_[+1]_4 chrV:18137840-18137920 7.7e-05 49_[+1]_23 chrIII:8429180-8429260 9.8e-05 43_[+1]_29 chrI:10881232-10881312 9.8e-05 60_[+1]_12 chrI:5411742-5411822 0.00012 67_[+1]_5 chrI:13839345-13839425 0.00012 51_[+1]_21 chrI:8309277-8309357 0.00012 53_[+1]_19 chrII:3546657-3546737 0.00012 17_[+1]_55 chrII:8270204-8270284 0.00015 29_[+1]_43 chrIII:8492115-8492195 0.00015 46_[+1]_26 chrIII:11195313-11195393 0.00015 10_[+1]_62 chrV:4552545-4552625 0.00015 41_[+1]_31 chrIII:11534851-11534931 0.00016 46_[+1]_26 chrI:7984830-7984910 0.00017 35_[+1]_37 chrII:4460431-4460511 0.00018 39_[+1]_33 chrIII:4891148-4891228 0.00022 51_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGCCTT width=8 seqs=78 chrII:7394459-7394539 ( 55) TGCGCCTT 1 chrII:4226743-4226823 ( 56) TGCGCCTT 1 chrII:9647605-9647685 ( 56) TGCGCCTT 1 chrIV:13154793-13154873 ( 41) TGCGCCTT 1 chrI:1360210-1360290 ( 59) TGCGCCTT 1 chrI:8531586-8531666 ( 49) TGCGCCTT 1 chrI:6003096-6003176 ( 73) TGCGCCTT 1 chrII:10853045-10853125 ( 39) TGCGCCTT 1 chrIV:2783344-2783424 ( 73) TGCGCCTT 1 chrII:7758914-7758994 ( 46) TGCGCCTT 1 chrI:3212676-3212756 ( 51) TGCGCCTT 1 chrII:7025068-7025148 ( 36) TGCGCCTT 1 chrII:1501110-1501190 ( 48) TGCGCCTT 1 chrIV:829844-829924 ( 44) TGCGCCTT 1 chrV:7199268-7199348 ( 40) TGCGCCTT 1 chrIV:4667980-4668060 ( 48) TGCGCCTT 1 chrIII:9566129-9566209 ( 55) TGCGCCTT 1 chrI:6573829-6573909 ( 54) TGCGCCTT 1 chrII:8127957-8128037 ( 61) TGCGCCTT 1 chrII:12036242-12036322 ( 41) TGCGCCTT 1 chrIII:5209153-5209233 ( 39) TGCGCCTT 1 chrIV:11470371-11470451 ( 22) TGCGCCTT 1 chrIV:12047714-12047794 ( 52) TGCGCCTT 1 chrIII:10442727-10442807 ( 36) TGCGCCTT 1 chrIII:13561376-13561456 ( 67) TGCGCCTT 1 chrI:2586783-2586863 ( 59) TGCGCCTT 1 chrIV:1051931-1052011 ( 3) TGCGCCTT 1 chrII:9319201-9319281 ( 68) TGCGCCTT 1 chrII:10863429-10863509 ( 33) TGCGCCTT 1 chrI:180060-180140 ( 29) TGCGCCTT 1 chrIV:11038358-11038438 ( 70) TGCGCCTT 1 chrI:4653268-4653348 ( 37) TGCGCCTT 1 chrII:4222560-4222640 ( 10) TGCGCCTT 1 chrIII:3534343-3534423 ( 61) TGCGCCTT 1 chrI:398493-398573 ( 59) TGCGCCTT 1 chrIV:2223285-2223365 ( 38) TGCGCCTT 1 chrIII:2461218-2461298 ( 24) TGCGCCTT 1 chrI:2980497-2980577 ( 63) TGCGCCTT 1 chrIV:14455262-14455342 ( 46) TGCGCCTT 1 chrV:7981136-7981216 ( 59) TGCGCCTT 1 chrI:12539648-12539728 ( 73) TGCGCCTT 1 chrV:5514130-5514210 ( 61) TGCGCCTT 1 chrIV:8205809-8205889 ( 24) TGCGCCTT 1 chrIII:2790710-2790790 ( 29) TGTGCCTT 1 chrII:13260706-13260786 ( 65) TGTGCCTT 1 chrI:8412611-8412691 ( 44) TGTGCCTT 1 chrIV:11498332-11498412 ( 48) TGTGCCTT 1 chrV:8521205-8521285 ( 56) TGTGCCTT 1 chrIII:3471128-3471208 ( 73) TGCCCCTT 1 chrI:6954256-6954336 ( 43) CGCGCCTT 1 chrIV:12805743-12805823 ( 34) CGCGCCTT 1 chrV:3204594-3204674 ( 66) CGCGCCTT 1 chrIII:4439759-4439839 ( 33) TGCACCTT 1 chrV:13193811-13193891 ( 42) TGCACCTT 1 chrV:1701744-1701824 ( 58) TGCTCCTT 1 chrV:4195440-4195520 ( 7) TGCTCCTT 1 chrIII:5988622-5988702 ( 58) TGTCCCTT 1 chrII:4320622-4320702 ( 58) TGTCCCTT 1 chrIV:12127237-12127317 ( 49) TGTCCCTT 1 chrI:6758766-6758846 ( 40) TGTCCCTT 1 chrII:7098746-7098826 ( 25) TGTCCCTT 1 chrIII:8831514-8831594 ( 39) TGTCCCTT 1 chrII:3934246-3934326 ( 69) TGTCCCTT 1 chrV:18137840-18137920 ( 50) TGTCCCTT 1 chrIII:8429180-8429260 ( 44) TGCGCCTC 1 chrI:10881232-10881312 ( 61) CGCCCCTT 1 chrI:5411742-5411822 ( 68) TGTACCTT 1 chrI:13839345-13839425 ( 52) TGTACCTT 1 chrI:8309277-8309357 ( 54) TGTACCTT 1 chrII:3546657-3546737 ( 18) TGTACCTT 1 chrII:8270204-8270284 ( 30) TGTTCCTT 1 chrIII:8492115-8492195 ( 47) TGTTCCTT 1 chrIII:11195313-11195393 ( 11) TGTTCCTT 1 chrV:4552545-4552625 ( 42) AGCGCCTT 1 chrIII:11534851-11534931 ( 47) TGCGCCAT 1 chrI:7984830-7984910 ( 36) TGAGCCTT 1 chrII:4460431-4460511 ( 40) TGCGTCTT 1 chrIII:4891148-4891228 ( 52) CGTCCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.08854 E= 5.7e-089 -454 -166 -1293 161 -1293 -1293 234 -1293 -454 183 -1293 -17 -195 -52 186 -224 -1293 229 -1293 -456 -1293 231 -1293 -1293 -454 -1293 -1293 171 -1293 -398 -1293 171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 5.7e-089 0.012821 0.064103 0.000000 0.923077 0.000000 0.000000 1.000000 0.000000 0.012821 0.717949 0.000000 0.269231 0.076923 0.141026 0.717949 0.064103 0.000000 0.987179 0.000000 0.012821 0.000000 1.000000 0.000000 0.000000 0.012821 0.000000 0.000000 0.987179 0.000000 0.012821 0.000000 0.987179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCTT MEME-1 regular expression -------------------------------------------------------------------------------- TG[CT]GCCTT -------------------------------------------------------------------------------- Time 6.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TACNGTAV MEME-2 width = 8 sites = 118 llr = 903 E-value = 1.7e-077 ******************************************************************************** -------------------------------------------------------------------------------- Motif TACNGTAV MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:3::93 pos.-specific C ::a2:::2 probability G 1::3a:14 matrix T 9::2:a:1 bits 2.3 * * 2.1 * * 1.9 * * 1.6 ** ** Relative 1.4 ** *** Entropy 1.2 *** *** (11.0 bits) 0.9 *** *** 0.7 *** *** 0.5 *** *** 0.2 *** **** 0.0 -------- Multilevel TACGGTAG consensus A A sequence C C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10783707-10783787 61 1.25e-05 TTGCAAAGGG TACGGTAG CCGATTCAAA chrII:10853045-10853125 58 1.25e-05 AAGAACAGGG TACGGTAG CTGATTAAAA chrII:4320622-4320702 73 1.25e-05 CTTGAAGCGG TACGGTAG chrIII:13641033-13641113 57 1.25e-05 TTTAAGTCAT TACGGTAG TTTTGATACC chrV:4963687-4963767 15 1.25e-05 CTTTAAAATG TACGGTAG GGTTTTGCGA chrII:7098746-7098826 44 1.25e-05 AAAAGATGAA TACGGTAG GACAGTTTGC chrII:4460431-4460511 54 1.25e-05 TCTTCAAGAC TACGGTAG CCAAAGCTTT chrV:19771015-19771095 33 1.25e-05 caaattttac tacggtag agattttaca chrII:7690575-7690655 49 1.25e-05 AAAAACTTGT TACGGTAG CGCGCAATTA chrIV:8205809-8205889 38 1.25e-05 cctttaaggt tacggtag tcggaaaatt chrIII:5958689-5958769 44 2.53e-05 TCGTTACGAT TACCGTAG TAAAACTGTT chrII:7025068-7025148 48 2.53e-05 CGCCTTGATT TACCGTAG ACGAGAGGCG chrII:4566392-4566472 28 2.53e-05 AAAAACCTGA TACCGTAG TCTTTAGAGG chrII:1501110-1501190 64 5.71e-05 TTTAAAGTGT TACGGTAC CTCGCAAAT chrI:6573829-6573909 73 5.71e-05 aGAAACGCAT TACGGTAC chrV:13009401-13009481 38 5.71e-05 GGTTAAAAAC TACAGTAG TTTCGTCTCT chrI:4210431-4210511 69 5.71e-05 TAGAACAAAC TACAGTAG CGAA chrI:715957-716037 33 5.71e-05 GGAAAAAAAC TACAGTAG TAATTTAAAG chrII:4222560-4222640 27 5.71e-05 TTAAATAAGC TACGGTAC TTTTTTTTTT chrII:2815172-2815252 61 5.71e-05 CTTTCACAGC TACAGTAG TCGACGAGAA chrIV:11298313-11298393 16 5.71e-05 AAATTCGGGG TACGGTAC TTCTTTAAAG chrIV:2223285-2223365 52 5.71e-05 CCTTGGAGAC TACGGTAC CCCCGCGTTG chrV:6268131-6268211 16 5.71e-05 TCGATTTTGC TACAGTAG TCATAATTTA chrI:2980497-2980577 19 5.71e-05 AATTAAGGAA TACGGTAC ACAATCGCGG chrII:4226743-4226823 70 8.92e-05 CCTTTGAAGA TACGGTAA CCA chrIII:5543203-5543283 15 8.92e-05 TGACTAACTG TACCGTAC CACTTCTAGG chrIV:13154793-13154873 54 8.92e-05 GCCTTGTAGT TACGGTAA GAAAAACGGG chrIV:3212085-3212165 17 8.92e-05 TGTTCCAATC TACCGTAC CCCTAGTCTC chrI:6003096-6003176 32 8.92e-05 AATATCAAGT TACGGTAA GCGTTGCGGG chrII:6683084-6683164 34 8.92e-05 TCGTCACGAC TACCGTAC CTTGAAATTT chrII:11974199-11974279 17 8.92e-05 AAGATAAGGA TACGGTAA CGGGGGGGAg chrII:5465904-5465984 19 8.92e-05 CCCGATGCAT TACCGTAC CACCAAACTA chrI:13839345-13839425 71 8.92e-05 aatTTTGCCG TACGGTAA GC chrII:11241636-11241716 54 8.92e-05 attttTCAGC TACCGTAC TCGCAATTAT chrV:11787906-11787986 18 8.92e-05 CAGCGCGTGC TACCGTAC CACTAACAGT chrI:8309277-8309357 70 8.92e-05 TTTAATTTAC TACGGTAA TTA chrIII:3534343-3534423 3 8.92e-05 AA TACCGTAC CCCGAACGTA chrI:7352191-7352271 25 8.92e-05 AACTCCCGGC TACCGTAC CCTGATATAT chrII:6860186-6860266 29 8.92e-05 TTTCGAAAAC TACCGTAC TCCTTCATTC chrV:4552545-4552625 61 8.92e-05 GTTAAATGGT TACGGTAA GTTGGAAAAT chrII:7394459-7394539 69 1.28e-04 CCTTTAAGAT TACTGTAG AAGT chrI:1360210-1360290 13 1.28e-04 ATTCAAAAAG TACTGTAG AAACTTTCGC chrIII:9504513-9504593 20 1.28e-04 CCTAATGGGC TACTGTAG CTAATAAGTT chrIII:2790710-2790790 44 1.28e-04 ctttaaagag tactgtag ttgtgaactt chrII:7758914-7758994 60 1.28e-04 CCTTTAAAAT TACTGTAG TGAATAGTAG chrIV:2914721-2914801 54 1.28e-04 TCTCTCCTCC TACTGTAG TGTGCAACAT chrIV:4667980-4668060 67 1.28e-04 AAGCTAGGGG TACTGTAG TTTAAA chrIII:9566129-9566209 9 1.28e-04 TTCCCAGT TACTGTAG GAGTGCGCGT chrII:14778237-14778317 19 1.28e-04 GAATCTCATC TACCGTAA GACTTAAAGG chrII:12036242-12036322 56 1.28e-04 ctttaaagat tactgtag tctcgaattt chrIII:5209153-5209233 54 1.28e-04 ctttaaaggt tactgtag tttgaaattt chrII:12808928-12809008 17 1.28e-04 AAATTATTGT TACTGTAG GCTATTAAAG chrI:180060-180140 43 1.28e-04 CCTTTAAAGC TACCGTAA CCCTATTTTT chrI:12483762-12483842 1 1.28e-04 . TACTGTAG TCAATACATT chrIII:311348-311428 38 1.28e-04 TCTCTCCTCC TACTGTAG AGTGTAATGT chrV:20476624-20476704 14 1.28e-04 AACTTTAGAA TACCGTAA GAAACATCAA chrIV:10858445-10858525 37 1.28e-04 CTTTAAATTT TACCGTAA CTAGCATTAA chrV:13193811-13193891 57 1.28e-04 CTTTGAAAGT TACTGTAG CAGTAAATAT chrII:11536652-11536732 2 1.28e-04 T TACCGTAA TCCTTTAAAG chrIII:2461218-2461298 39 1.28e-04 CTTTAAAGAG TACTGTAG TTTTTGTCTT chrII:9842290-9842370 47 1.28e-04 CGAAATGGGG TACTGTAG CGAGTAATGT chrII:3808788-3808868 24 1.28e-04 GAGAAGCTCG TACCGTAA TCTAGTTTTG chrIII:4987811-4987891 10 1.28e-04 TTAAAATGT TACCGTAA CTTTGCTCGa chrI:8412611-8412691 58 1.28e-04 CCTTTAAAAC TACCGTAA CCTGGAAGTT chrIII:6283206-6283286 11 1.28e-04 cttacaatag tactgtag tttcaaactt chrV:8521205-8521285 70 1.28e-04 CCTTTACTAT TACCGTAA TTT chrI:4608501-4608581 60 1.47e-04 aatgagagat tacagtac tctttaaagg chrIII:3040869-3040949 50 1.47e-04 CATTCGCAGG TACAGTAC CCCGGGAAAA chrV:17658984-17659064 53 1.47e-04 CTTTGCCGCC TACAGTAC CCAATTTTTT chrI:10808354-10808434 35 1.47e-04 GCCGACAGAC TACAGTAC TCAATTAGAA chrIII:8831514-8831594 50 1.47e-04 GTCCCTTTAA TACAGTAC CCGGCAAAAG chrI:10798348-10798428 12 1.47e-04 gtctataaat tacagtac ccctttaaag chrI:2905767-2905847 16 1.76e-04 AACATTCATG TACAGTAA CCTTAAAGGC chrIV:829844-829924 59 1.76e-04 CTTTAAGTTC TACAGTAA CTTTTTCATG chrIII:13104565-13104645 39 1.76e-04 AGCTTTCAAG TACAGTAA GAACTTAAAG chrI:7914740-7914820 6 1.76e-04 TTTTC TACAGTAA CCTTAAAGGC chrIII:10330804-10330884 19 1.76e-04 ACTTCACAAA TACAGTAA TCAGACATAA chrI:4114600-4114680 3 1.76e-04 GC TACAGTAA ACCACCACAC chrV:5046730-5046810 5 1.76e-04 TTTC TACAGTAA ACTTGAAACG chrIV:10985710-10985790 19 1.76e-04 TCTAACCCGC TACAGTAA ACCACCACAC chrV:11917341-11917421 16 1.76e-04 GAAAATTATC TACAGTAA TCCTAAAGGC chrIII:11195313-11195393 25 1.76e-04 CCTTTAAAAC TACAGTAA GGCTCGATTA chrII:4236144-4236224 14 1.76e-04 CCTTCAAATT TACAGTAA ACTCGGCGTG chrI:4653268-4653348 52 1.76e-04 CTTTAAAAAC TACAGTAA CCCTTGTCCG chrIII:4891148-4891228 4 1.76e-04 ATA TACAGTAA TCCTATACCG chrV:18137840-18137920 64 1.76e-04 CCTTTAAATT TACAGTAA TATTTGCGT chrII:4604870-4604950 10 1.95e-04 TTTGTAGGG tactgtac tctttaaagg chrI:1445979-1446059 20 2.24e-04 ATATTTTGGG TACTGTAA TTTTTAAAGT chrIV:183702-183782 7 2.24e-04 AGAGAC TACTGTAA AAATTAAAGG chrII:10863429-10863509 59 2.24e-04 GAAGAGAGAT TACTGTAA TTTTTTAAAG chrIV:11124831-11124911 69 2.24e-04 ATCGGAGTAG TACTGTAA TTTT chrV:13660274-13660354 19 2.52e-04 CGAAAGTGAT TACGGTAT AATTTAAAGG chrII:6782119-6782199 41 2.52e-04 ATTTTGCGAC TACGGTAT ACAATATGTC chrIV:11498332-11498412 67 2.52e-04 AAAATTGACC TACGGTAT AGGCTA chrI:8531586-8531666 62 2.88e-04 GCCTTCGAAA TACGGTGG TAAATTAACG chrIV:11470371-11470451 33 2.88e-04 GCGCCTTAGT TACCGTAT TCCATCATCC chrI:5511855-5511935 62 2.88e-04 CGCTACGAAG TACCGTAT TGGCTTTAAA chrIV:10546732-10546812 38 2.88e-04 TTTTTTCAAC TACCGTAT GCATTAAAGG chrIV:12127237-12127317 67 3.46e-04 TAAGGTAATT GACAGTAG CACACA chrV:7199268-7199348 54 3.46e-04 CCTTTAAGGC TACAGTAT TCGATTTCAG chrIII:8429180-8429260 70 3.46e-04 CTTTTTGTAT GACAGTAG AGC chrI:2432304-2432384 4 3.97e-04 AAA GACCGTAC TTTCTTAAAG chrIV:11660078-11660158 51 3.97e-04 gcgccaaaat tacggtgc caggtctcgg chrII:4888640-4888720 35 3.97e-04 TTTTATTAAT TACGGTCG GTTTAAAGGC chrV:19125440-19125520 22 3.97e-04 AAAATTGGGT TACGGTCG GTTTAAAGGC chrV:10049611-10049691 4 4.81e-04 ATA TACGGTGA CTCTCTCATA chrIV:12805743-12805823 48 4.81e-04 CCTTTAAATT GACCGTAA CCTCAAGCCG chrI:6758766-6758846 55 4.81e-04 CTTTAAAGTA TACCGTGC TCTCATATTG chrIII:5047886-5047966 41 5.07e-04 CTTCGCCGAT TACTGTGG TTTTAAAGGA chrI:7985083-7985163 62 5.28e-04 AAACATACCA GACAGTAC GTAATTTTAA chrV:5666478-5666558 19 5.89e-04 GAAATGtttt gacagtaa tctttaaagg chrIII:10442727-10442807 68 6.43e-04 CAAAGAGGGT TACGGTCA AATTC chrII:1306715-1306795 54 7.01e-04 AGGAACATCT TACTGTCG CTTTCAAATT chrIII:4439759-4439839 48 7.01e-04 CTTTAAGTGT GACTGTAA CCGGATTGAA chrII:9647605-9647685 69 7.41e-04 GCCTTTAAAT TACTGTGA GAGT chrIV:10157179-10157259 8 7.76e-04 CAGAAGG CACCGTAC ACTAACAATT chrI:6007763-6007843 2 7.76e-04 A CACCGTAC CATTTCTTTA chrV:8355603-8355683 44 8.67e-04 ACCGAAGTTG CACAGTAC CCCTTCAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10783707-10783787 1.3e-05 60_[+2]_12 chrII:10853045-10853125 1.3e-05 57_[+2]_15 chrII:4320622-4320702 1.3e-05 72_[+2] chrIII:13641033-13641113 1.3e-05 56_[+2]_16 chrV:4963687-4963767 1.3e-05 14_[+2]_58 chrII:7098746-7098826 1.3e-05 43_[+2]_29 chrII:4460431-4460511 1.3e-05 53_[+2]_19 chrV:19771015-19771095 1.3e-05 32_[+2]_40 chrII:7690575-7690655 1.3e-05 48_[+2]_24 chrIV:8205809-8205889 1.3e-05 37_[+2]_35 chrIII:5958689-5958769 2.5e-05 43_[+2]_29 chrII:7025068-7025148 2.5e-05 47_[+2]_25 chrII:4566392-4566472 2.5e-05 27_[+2]_45 chrII:1501110-1501190 5.7e-05 63_[+2]_9 chrI:6573829-6573909 5.7e-05 72_[+2] chrV:13009401-13009481 5.7e-05 37_[+2]_35 chrI:4210431-4210511 5.7e-05 68_[+2]_4 chrI:715957-716037 5.7e-05 32_[+2]_40 chrII:4222560-4222640 5.7e-05 26_[+2]_46 chrII:2815172-2815252 5.7e-05 60_[+2]_12 chrIV:11298313-11298393 5.7e-05 15_[+2]_57 chrIV:2223285-2223365 5.7e-05 51_[+2]_21 chrV:6268131-6268211 5.7e-05 15_[+2]_57 chrI:2980497-2980577 5.7e-05 18_[+2]_54 chrII:4226743-4226823 8.9e-05 69_[+2]_3 chrIII:5543203-5543283 8.9e-05 14_[+2]_58 chrIV:13154793-13154873 8.9e-05 53_[+2]_19 chrIV:3212085-3212165 8.9e-05 16_[+2]_56 chrI:6003096-6003176 8.9e-05 31_[+2]_41 chrII:6683084-6683164 8.9e-05 33_[+2]_39 chrII:11974199-11974279 8.9e-05 16_[+2]_56 chrII:5465904-5465984 8.9e-05 18_[+2]_54 chrI:13839345-13839425 8.9e-05 70_[+2]_2 chrII:11241636-11241716 8.9e-05 53_[+2]_19 chrV:11787906-11787986 8.9e-05 17_[+2]_55 chrI:8309277-8309357 8.9e-05 69_[+2]_3 chrIII:3534343-3534423 8.9e-05 2_[+2]_70 chrI:7352191-7352271 8.9e-05 24_[+2]_48 chrII:6860186-6860266 8.9e-05 28_[+2]_44 chrV:4552545-4552625 8.9e-05 60_[+2]_12 chrII:7394459-7394539 0.00013 68_[+2]_4 chrI:1360210-1360290 0.00013 12_[+2]_60 chrIII:9504513-9504593 0.00013 19_[+2]_53 chrIII:2790710-2790790 0.00013 43_[+2]_29 chrII:7758914-7758994 0.00013 59_[+2]_13 chrIV:2914721-2914801 0.00013 53_[+2]_19 chrIV:4667980-4668060 0.00013 66_[+2]_6 chrIII:9566129-9566209 0.00013 8_[+2]_64 chrII:14778237-14778317 0.00013 18_[+2]_54 chrII:12036242-12036322 0.00013 55_[+2]_17 chrIII:5209153-5209233 0.00013 53_[+2]_19 chrII:12808928-12809008 0.00013 16_[+2]_56 chrI:180060-180140 0.00013 42_[+2]_30 chrI:12483762-12483842 0.00013 [+2]_72 chrIII:311348-311428 0.00013 37_[+2]_35 chrV:20476624-20476704 0.00013 13_[+2]_59 chrIV:10858445-10858525 0.00013 36_[+2]_36 chrV:13193811-13193891 0.00013 56_[+2]_16 chrII:11536652-11536732 0.00013 1_[+2]_71 chrIII:2461218-2461298 0.00013 38_[+2]_34 chrII:9842290-9842370 0.00013 46_[+2]_26 chrII:3808788-3808868 0.00013 23_[+2]_49 chrIII:4987811-4987891 0.00013 9_[+2]_63 chrI:8412611-8412691 0.00013 57_[+2]_15 chrIII:6283206-6283286 0.00013 10_[+2]_62 chrV:8521205-8521285 0.00013 69_[+2]_3 chrI:4608501-4608581 0.00015 59_[+2]_13 chrIII:3040869-3040949 0.00015 49_[+2]_23 chrV:17658984-17659064 0.00015 52_[+2]_20 chrI:10808354-10808434 0.00015 34_[+2]_38 chrIII:8831514-8831594 0.00015 49_[+2]_23 chrI:10798348-10798428 0.00015 11_[+2]_61 chrI:2905767-2905847 0.00018 15_[+2]_57 chrIV:829844-829924 0.00018 58_[+2]_14 chrIII:13104565-13104645 0.00018 38_[+2]_34 chrI:7914740-7914820 0.00018 5_[+2]_67 chrIII:10330804-10330884 0.00018 18_[+2]_54 chrI:4114600-4114680 0.00018 2_[+2]_70 chrV:5046730-5046810 0.00018 4_[+2]_68 chrIV:10985710-10985790 0.00018 18_[+2]_54 chrV:11917341-11917421 0.00018 15_[+2]_57 chrIII:11195313-11195393 0.00018 24_[+2]_48 chrII:4236144-4236224 0.00018 13_[+2]_59 chrI:4653268-4653348 0.00018 51_[+2]_21 chrIII:4891148-4891228 0.00018 3_[+2]_69 chrV:18137840-18137920 0.00018 63_[+2]_9 chrII:4604870-4604950 0.0002 9_[+2]_63 chrI:1445979-1446059 0.00022 19_[+2]_53 chrIV:183702-183782 0.00022 6_[+2]_66 chrII:10863429-10863509 0.00022 58_[+2]_14 chrIV:11124831-11124911 0.00022 68_[+2]_4 chrV:13660274-13660354 0.00025 18_[+2]_54 chrII:6782119-6782199 0.00025 40_[+2]_32 chrIV:11498332-11498412 0.00025 66_[+2]_6 chrI:8531586-8531666 0.00029 61_[+2]_11 chrIV:11470371-11470451 0.00029 32_[+2]_40 chrI:5511855-5511935 0.00029 61_[+2]_11 chrIV:10546732-10546812 0.00029 37_[+2]_35 chrIV:12127237-12127317 0.00035 66_[+2]_6 chrV:7199268-7199348 0.00035 53_[+2]_19 chrIII:8429180-8429260 0.00035 69_[+2]_3 chrI:2432304-2432384 0.0004 3_[+2]_69 chrIV:11660078-11660158 0.0004 50_[+2]_22 chrII:4888640-4888720 0.0004 34_[+2]_38 chrV:19125440-19125520 0.0004 21_[+2]_51 chrV:10049611-10049691 0.00048 3_[+2]_69 chrIV:12805743-12805823 0.00048 47_[+2]_25 chrI:6758766-6758846 0.00048 54_[+2]_18 chrIII:5047886-5047966 0.00051 40_[+2]_32 chrI:7985083-7985163 0.00053 61_[+2]_11 chrV:5666478-5666558 0.00059 18_[+2]_54 chrIII:10442727-10442807 0.00064 67_[+2]_5 chrII:1306715-1306795 0.0007 53_[+2]_19 chrIII:4439759-4439839 0.0007 47_[+2]_25 chrII:9647605-9647685 0.00074 68_[+2]_4 chrIV:10157179-10157259 0.00078 7_[+2]_65 chrI:6007763-6007843 0.00078 1_[+2]_71 chrV:8355603-8355683 0.00087 43_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TACNGTAV width=8 seqs=118 chrII:10783707-10783787 ( 61) TACGGTAG 1 chrII:10853045-10853125 ( 58) TACGGTAG 1 chrII:4320622-4320702 ( 73) TACGGTAG 1 chrIII:13641033-13641113 ( 57) TACGGTAG 1 chrV:4963687-4963767 ( 15) TACGGTAG 1 chrII:7098746-7098826 ( 44) TACGGTAG 1 chrII:4460431-4460511 ( 54) TACGGTAG 1 chrV:19771015-19771095 ( 33) TACGGTAG 1 chrII:7690575-7690655 ( 49) TACGGTAG 1 chrIV:8205809-8205889 ( 38) TACGGTAG 1 chrIII:5958689-5958769 ( 44) TACCGTAG 1 chrII:7025068-7025148 ( 48) TACCGTAG 1 chrII:4566392-4566472 ( 28) TACCGTAG 1 chrII:1501110-1501190 ( 64) TACGGTAC 1 chrI:6573829-6573909 ( 73) TACGGTAC 1 chrV:13009401-13009481 ( 38) TACAGTAG 1 chrI:4210431-4210511 ( 69) TACAGTAG 1 chrI:715957-716037 ( 33) TACAGTAG 1 chrII:4222560-4222640 ( 27) TACGGTAC 1 chrII:2815172-2815252 ( 61) TACAGTAG 1 chrIV:11298313-11298393 ( 16) TACGGTAC 1 chrIV:2223285-2223365 ( 52) TACGGTAC 1 chrV:6268131-6268211 ( 16) TACAGTAG 1 chrI:2980497-2980577 ( 19) TACGGTAC 1 chrII:4226743-4226823 ( 70) TACGGTAA 1 chrIII:5543203-5543283 ( 15) TACCGTAC 1 chrIV:13154793-13154873 ( 54) TACGGTAA 1 chrIV:3212085-3212165 ( 17) TACCGTAC 1 chrI:6003096-6003176 ( 32) TACGGTAA 1 chrII:6683084-6683164 ( 34) TACCGTAC 1 chrII:11974199-11974279 ( 17) TACGGTAA 1 chrII:5465904-5465984 ( 19) TACCGTAC 1 chrI:13839345-13839425 ( 71) TACGGTAA 1 chrII:11241636-11241716 ( 54) TACCGTAC 1 chrV:11787906-11787986 ( 18) TACCGTAC 1 chrI:8309277-8309357 ( 70) TACGGTAA 1 chrIII:3534343-3534423 ( 3) TACCGTAC 1 chrI:7352191-7352271 ( 25) TACCGTAC 1 chrII:6860186-6860266 ( 29) TACCGTAC 1 chrV:4552545-4552625 ( 61) TACGGTAA 1 chrII:7394459-7394539 ( 69) TACTGTAG 1 chrI:1360210-1360290 ( 13) TACTGTAG 1 chrIII:9504513-9504593 ( 20) TACTGTAG 1 chrIII:2790710-2790790 ( 44) TACTGTAG 1 chrII:7758914-7758994 ( 60) TACTGTAG 1 chrIV:2914721-2914801 ( 54) TACTGTAG 1 chrIV:4667980-4668060 ( 67) TACTGTAG 1 chrIII:9566129-9566209 ( 9) TACTGTAG 1 chrII:14778237-14778317 ( 19) TACCGTAA 1 chrII:12036242-12036322 ( 56) TACTGTAG 1 chrIII:5209153-5209233 ( 54) TACTGTAG 1 chrII:12808928-12809008 ( 17) TACTGTAG 1 chrI:180060-180140 ( 43) TACCGTAA 1 chrI:12483762-12483842 ( 1) TACTGTAG 1 chrIII:311348-311428 ( 38) TACTGTAG 1 chrV:20476624-20476704 ( 14) TACCGTAA 1 chrIV:10858445-10858525 ( 37) TACCGTAA 1 chrV:13193811-13193891 ( 57) TACTGTAG 1 chrII:11536652-11536732 ( 2) TACCGTAA 1 chrIII:2461218-2461298 ( 39) TACTGTAG 1 chrII:9842290-9842370 ( 47) TACTGTAG 1 chrII:3808788-3808868 ( 24) TACCGTAA 1 chrIII:4987811-4987891 ( 10) TACCGTAA 1 chrI:8412611-8412691 ( 58) TACCGTAA 1 chrIII:6283206-6283286 ( 11) TACTGTAG 1 chrV:8521205-8521285 ( 70) TACCGTAA 1 chrI:4608501-4608581 ( 60) TACAGTAC 1 chrIII:3040869-3040949 ( 50) TACAGTAC 1 chrV:17658984-17659064 ( 53) TACAGTAC 1 chrI:10808354-10808434 ( 35) TACAGTAC 1 chrIII:8831514-8831594 ( 50) TACAGTAC 1 chrI:10798348-10798428 ( 12) TACAGTAC 1 chrI:2905767-2905847 ( 16) TACAGTAA 1 chrIV:829844-829924 ( 59) TACAGTAA 1 chrIII:13104565-13104645 ( 39) TACAGTAA 1 chrI:7914740-7914820 ( 6) TACAGTAA 1 chrIII:10330804-10330884 ( 19) TACAGTAA 1 chrI:4114600-4114680 ( 3) TACAGTAA 1 chrV:5046730-5046810 ( 5) TACAGTAA 1 chrIV:10985710-10985790 ( 19) TACAGTAA 1 chrV:11917341-11917421 ( 16) TACAGTAA 1 chrIII:11195313-11195393 ( 25) TACAGTAA 1 chrII:4236144-4236224 ( 14) TACAGTAA 1 chrI:4653268-4653348 ( 52) TACAGTAA 1 chrIII:4891148-4891228 ( 4) TACAGTAA 1 chrV:18137840-18137920 ( 64) TACAGTAA 1 chrII:4604870-4604950 ( 10) TACTGTAC 1 chrI:1445979-1446059 ( 20) TACTGTAA 1 chrIV:183702-183782 ( 7) TACTGTAA 1 chrII:10863429-10863509 ( 59) TACTGTAA 1 chrIV:11124831-11124911 ( 69) TACTGTAA 1 chrV:13660274-13660354 ( 19) TACGGTAT 1 chrII:6782119-6782199 ( 41) TACGGTAT 1 chrIV:11498332-11498412 ( 67) TACGGTAT 1 chrI:8531586-8531666 ( 62) TACGGTGG 1 chrIV:11470371-11470451 ( 33) TACCGTAT 1 chrI:5511855-5511935 ( 62) TACCGTAT 1 chrIV:10546732-10546812 ( 38) TACCGTAT 1 chrIV:12127237-12127317 ( 67) GACAGTAG 1 chrV:7199268-7199348 ( 54) TACAGTAT 1 chrIII:8429180-8429260 ( 70) GACAGTAG 1 chrI:2432304-2432384 ( 4) GACCGTAC 1 chrIV:11660078-11660158 ( 51) TACGGTGC 1 chrII:4888640-4888720 ( 35) TACGGTCG 1 chrV:19125440-19125520 ( 22) TACGGTCG 1 chrV:10049611-10049691 ( 4) TACGGTGA 1 chrIV:12805743-12805823 ( 48) GACCGTAA 1 chrI:6758766-6758846 ( 55) TACCGTGC 1 chrIII:5047886-5047966 ( 41) TACTGTGG 1 chrI:7985083-7985163 ( 62) GACAGTAC 1 chrV:5666478-5666558 ( 19) GACAGTAA 1 chrIII:10442727-10442807 ( 68) TACGGTCA 1 chrII:1306715-1306795 ( 54) TACTGTCG 1 chrIII:4439759-4439839 ( 48) GACTGTAA 1 chrII:9647605-9647685 ( 69) TACTGTGA 1 chrIV:10157179-10157259 ( 8) CACCGTAC 1 chrI:6007763-6007843 ( 2) CACCGTAC 1 chrV:8355603-8355683 ( 44) CACAGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.16833 E= 1.7e-077 -1353 -299 -173 160 175 -1353 -1353 -1353 -1353 231 -1353 -1353 -18 28 46 -46 -1353 -1353 234 -1353 -1353 -1353 -1353 173 162 -258 -196 -1353 19 28 85 -235 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 1.7e-077 0.000000 0.025424 0.059322 0.915254 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.262712 0.245763 0.271186 0.220339 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.915254 0.033898 0.050847 0.000000 0.338983 0.245763 0.355932 0.059322 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAV MEME-2 regular expression -------------------------------------------------------------------------------- TAC[GACT]GTA[GAC] -------------------------------------------------------------------------------- Time 10.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CGAGACCC MEME-3 width = 8 sites = 63 llr = 605 E-value = 3.6e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGAGACCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::91a::1 pos.-specific C 9::::aa7 probability G :a19:::: matrix T 1::::::1 bits 2.3 * 2.1 * ** 1.9 ** * ** 1.6 ** * ** Relative 1.4 ** **** Entropy 1.2 ******* (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGAGACCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGACCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8618733-8618813 30 5.74e-06 TTCCGCGTGG CGAGACCC ATCCAAAGAA chrII:9647605-9647685 31 5.74e-06 TATAGCGTGG CGAGACCC GTTCAAACTT chrI:1360210-1360290 33 5.74e-06 ACTTTCGCAG CGAGACCC ATAGAGCCCA chrIV:2783344-2783424 46 5.74e-06 ATTTTCCAGT CGAGACCC GCTGCACAAA chrI:3212676-3212756 26 5.74e-06 GAGATCGCGC CGAGACCC GCTCAAACTT chrII:7025068-7025148 9 5.74e-06 AATCGGTG CGAGACCC AAAGCGCTAA chrI:5411742-5411822 43 5.74e-06 actttcgcgt cgagaccc attagaataa chrIII:13641033-13641113 16 5.74e-06 CCACTCGCTG CGAGACCC CTCGTCTCGG chrII:8270204-8270284 5 5.74e-06 GTGG CGAGACCC TCTAAAAATT chrI:6573829-6573909 31 5.74e-06 tttctcgtgg cgagaccc atccgaaaaa chrII:8127957-8128037 38 5.74e-06 ttttgcgcac cgagaccc atctgaataa chrI:13839345-13839425 26 5.74e-06 actttcgcgt cgagaccc accacttgaa chrV:5046730-5046810 28 5.74e-06 AAACGCGCTG CGAGACCC AACCCTTCAA chrI:6954256-6954336 17 5.74e-06 ATTTTCTCGA CGAGACCC CTACAAATTT chrIII:3471128-3471208 46 5.74e-06 TAGTTCGTTG CGAGACCC ATCACTTAGA chrV:3204594-3204674 39 5.74e-06 AAAGTCGCGT CGAGACCC TTCACACTTT chrI:8309277-8309357 29 5.74e-06 CAAGTCGCTG CGAGACCC AGGTGAAAAT chrV:13193811-13193891 19 5.74e-06 AAGATCGCGT CGAGACCC TCACCGCTGA chrII:3934246-3934326 46 5.74e-06 CAAATCGTTG CGAGACCC ATTGGTATTC chrV:4195440-4195520 51 5.74e-06 GTTTTCGTTG CGAGACCC GGGCTTAAAT chrIV:14455262-14455342 20 5.74e-06 TTCATCGCGT CGAGACCC ATCGAACACT chrI:12539648-12539728 47 5.74e-06 AAATTCGTGG CGAGACCC GTCGAAAAAG chrI:8412611-8412691 18 5.74e-06 ATATGCGCTG CGAGACCC AAAGCAAGTG chrV:18137840-18137920 23 5.74e-06 CACATCGCGG CGAGACCC GTGCAGAAAG chrV:4552545-4552625 16 5.74e-06 TCAATCGTTT CGAGACCC AACGATGTTA chrII:4226743-4226823 30 9.53e-06 CTTTTCGCGG CGGGACCC AAATCACCAA chrIV:13154793-13154873 15 9.53e-06 GTGATCGTTG CGGGACCC GATGAACCGA chrI:6003096-6003176 46 9.53e-06 GTAAGCGTTG CGGGACCC GCGTGCACAC chrII:1501110-1501190 22 9.53e-06 GCTTTCCCTT CGGGACCC GGCTATGAAA chrV:11787906-11787986 41 9.53e-06 ACAGTCGCTG CGGGACCC AATCAAAGAG chrII:9319201-9319281 42 9.53e-06 AAAGTCGTTG CGGGACCC GTCTGGTTTT chrI:2905767-2905847 60 1.80e-05 GTTTTCGCTT CGAGACCA TCCGTAATTA chrI:7914740-7914820 59 1.80e-05 ACGCGCGCGG CGAGACCA TTCTGCAAAA chrV:11917341-11917421 68 1.80e-05 AAAcgcgtgg cgagacca ttttg chrI:6758766-6758846 15 1.80e-05 ACGATCCCTG CGAGACCA TTATGCTTTA chrI:7984830-7984910 10 1.80e-05 TATTCCATG CGAGACCA CACGAAGCTT chrIV:11038358-11038438 45 1.80e-05 AAAGTCGCGT CGAGACCA TTACAAAGTA chrII:6860186-6860266 58 1.80e-05 CATATCGCTG CGAGACCA TTTGGTGCAT chrIII:9566129-9566209 29 2.66e-05 GTGCGCGTGC CGAGACCT GACCTTAGGA chrIII:13561376-13561456 40 2.66e-05 AAGTTCGCGA CGAGACCT GATTTGTAAC chrI:180060-180140 3 2.66e-05 AG CGAGACCT CAACGATCAC chrIII:4891148-4891228 29 2.66e-05 CCGAGCGTTG CGAGACCT CATCCCGAGC chrV:8521205-8521285 30 2.66e-05 GTGTTCCGTG CGAGACCT GCGTTTAAAT chrI:8531586-8531666 23 4.38e-05 TCATTCCCTG CGAAACCC AATAAACATA chrII:4320622-4320702 33 4.38e-05 TCAATCGTTG CGAAACCC GTGCAAGAAT chrIV:829844-829924 18 4.38e-05 AAAGGCGTGG CGAAACCC AAACGAAGAA chrII:5465904-5465984 4 4.38e-05 TTG CGAAACCC GATGCATTAC chrIII:10442727-10442807 9 4.38e-05 TTCCGTGC TGAGACCC GATGTGAAAA chrI:10808354-10808434 59 4.38e-05 AGAATCGCGG TGAGACCC AGTGGGCAAA chrI:2586783-2586863 32 4.38e-05 GAAATCGCAG TGAGACCC GAAGCCAGAA chrI:2980497-2980577 37 4.38e-05 ACAATCGCGG TGAGACCC GAAACCTCAA chrIV:12127237-12127317 24 5.83e-05 TCTAGCGCTT CAAGACCC GCACCCCGAA chrIII:10469820-10469900 38 5.83e-05 ATAAGTTTAC CGAGTCCC GCCAAGAACT chrV:5514130-5514210 35 5.83e-05 ATTTTCGTGG CAAGACCC GCCAGTCAGC chrIV:3212085-3212165 67 7.34e-05 TCAGTCGCTT CGAGGCCC GGCAAA chrV:6268131-6268211 66 7.34e-05 GCAATCGTCG CGGGACCT TTATGCT chrIV:11498332-11498412 22 7.90e-05 TGAGTCGCGT CGAGACCG ATGCGCAGAT chrIV:12805743-12805823 8 9.90e-05 TTCCACG CGAGACTC ATTCACAACA chrV:13550097-13550177 22 1.34e-04 tcagcacgct cgaaacca tgcgaaatca chrV:16747161-16747241 70 1.34e-04 TTATTCGTGG CAGGACCC AGC chrIV:11124831-11124911 44 1.34e-04 AAATAAAGCA CGGGTCCC GCAGCGAATC chrIII:4439759-4439839 10 1.60e-04 GTGGCGTGG TGAGACCT GTGAACCGAC chrIV:1420765-1420845 3 1.79e-04 AA TGAAACCC ATTGTCATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGACCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8618733-8618813 5.7e-06 29_[+3]_43 chrII:9647605-9647685 5.7e-06 30_[+3]_42 chrI:1360210-1360290 5.7e-06 32_[+3]_40 chrIV:2783344-2783424 5.7e-06 45_[+3]_27 chrI:3212676-3212756 5.7e-06 25_[+3]_47 chrII:7025068-7025148 5.7e-06 8_[+3]_64 chrI:5411742-5411822 5.7e-06 42_[+3]_30 chrIII:13641033-13641113 5.7e-06 15_[+3]_57 chrII:8270204-8270284 5.7e-06 4_[+3]_68 chrI:6573829-6573909 5.7e-06 30_[+3]_42 chrII:8127957-8128037 5.7e-06 37_[+3]_35 chrI:13839345-13839425 5.7e-06 25_[+3]_47 chrV:5046730-5046810 5.7e-06 27_[+3]_45 chrI:6954256-6954336 5.7e-06 16_[+3]_56 chrIII:3471128-3471208 5.7e-06 45_[+3]_27 chrV:3204594-3204674 5.7e-06 38_[+3]_34 chrI:8309277-8309357 5.7e-06 28_[+3]_44 chrV:13193811-13193891 5.7e-06 18_[+3]_54 chrII:3934246-3934326 5.7e-06 45_[+3]_27 chrV:4195440-4195520 5.7e-06 50_[+3]_22 chrIV:14455262-14455342 5.7e-06 19_[+3]_53 chrI:12539648-12539728 5.7e-06 46_[+3]_26 chrI:8412611-8412691 5.7e-06 17_[+3]_55 chrV:18137840-18137920 5.7e-06 22_[+3]_50 chrV:4552545-4552625 5.7e-06 15_[+3]_57 chrII:4226743-4226823 9.5e-06 29_[+3]_43 chrIV:13154793-13154873 9.5e-06 14_[+3]_58 chrI:6003096-6003176 9.5e-06 45_[+3]_27 chrII:1501110-1501190 9.5e-06 21_[+3]_51 chrV:11787906-11787986 9.5e-06 40_[+3]_32 chrII:9319201-9319281 9.5e-06 41_[+3]_31 chrI:2905767-2905847 1.8e-05 59_[+3]_13 chrI:7914740-7914820 1.8e-05 58_[+3]_14 chrV:11917341-11917421 1.8e-05 67_[+3]_5 chrI:6758766-6758846 1.8e-05 14_[+3]_58 chrI:7984830-7984910 1.8e-05 9_[+3]_63 chrIV:11038358-11038438 1.8e-05 44_[+3]_28 chrII:6860186-6860266 1.8e-05 57_[+3]_15 chrIII:9566129-9566209 2.7e-05 28_[+3]_44 chrIII:13561376-13561456 2.7e-05 39_[+3]_33 chrI:180060-180140 2.7e-05 2_[+3]_70 chrIII:4891148-4891228 2.7e-05 28_[+3]_44 chrV:8521205-8521285 2.7e-05 29_[+3]_43 chrI:8531586-8531666 4.4e-05 22_[+3]_50 chrII:4320622-4320702 4.4e-05 32_[+3]_40 chrIV:829844-829924 4.4e-05 17_[+3]_55 chrII:5465904-5465984 4.4e-05 3_[+3]_69 chrIII:10442727-10442807 4.4e-05 8_[+3]_64 chrI:10808354-10808434 4.4e-05 58_[+3]_14 chrI:2586783-2586863 4.4e-05 31_[+3]_41 chrI:2980497-2980577 4.4e-05 36_[+3]_36 chrIV:12127237-12127317 5.8e-05 23_[+3]_49 chrIII:10469820-10469900 5.8e-05 37_[+3]_35 chrV:5514130-5514210 5.8e-05 34_[+3]_38 chrIV:3212085-3212165 7.3e-05 66_[+3]_6 chrV:6268131-6268211 7.3e-05 65_[+3]_7 chrIV:11498332-11498412 7.9e-05 21_[+3]_51 chrIV:12805743-12805823 9.9e-05 7_[+3]_65 chrV:13550097-13550177 0.00013 21_[+3]_51 chrV:16747161-16747241 0.00013 69_[+3]_3 chrIV:11124831-11124911 0.00013 43_[+3]_29 chrIII:4439759-4439839 0.00016 9_[+3]_63 chrIV:1420765-1420845 0.00018 2_[+3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGACCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGAGACCC width=8 seqs=63 chrIII:8618733-8618813 ( 30) CGAGACCC 1 chrII:9647605-9647685 ( 31) CGAGACCC 1 chrI:1360210-1360290 ( 33) CGAGACCC 1 chrIV:2783344-2783424 ( 46) CGAGACCC 1 chrI:3212676-3212756 ( 26) CGAGACCC 1 chrII:7025068-7025148 ( 9) CGAGACCC 1 chrI:5411742-5411822 ( 43) CGAGACCC 1 chrIII:13641033-13641113 ( 16) CGAGACCC 1 chrII:8270204-8270284 ( 5) CGAGACCC 1 chrI:6573829-6573909 ( 31) CGAGACCC 1 chrII:8127957-8128037 ( 38) CGAGACCC 1 chrI:13839345-13839425 ( 26) CGAGACCC 1 chrV:5046730-5046810 ( 28) CGAGACCC 1 chrI:6954256-6954336 ( 17) CGAGACCC 1 chrIII:3471128-3471208 ( 46) CGAGACCC 1 chrV:3204594-3204674 ( 39) CGAGACCC 1 chrI:8309277-8309357 ( 29) CGAGACCC 1 chrV:13193811-13193891 ( 19) CGAGACCC 1 chrII:3934246-3934326 ( 46) CGAGACCC 1 chrV:4195440-4195520 ( 51) CGAGACCC 1 chrIV:14455262-14455342 ( 20) CGAGACCC 1 chrI:12539648-12539728 ( 47) CGAGACCC 1 chrI:8412611-8412691 ( 18) CGAGACCC 1 chrV:18137840-18137920 ( 23) CGAGACCC 1 chrV:4552545-4552625 ( 16) CGAGACCC 1 chrII:4226743-4226823 ( 30) CGGGACCC 1 chrIV:13154793-13154873 ( 15) CGGGACCC 1 chrI:6003096-6003176 ( 46) CGGGACCC 1 chrII:1501110-1501190 ( 22) CGGGACCC 1 chrV:11787906-11787986 ( 41) CGGGACCC 1 chrII:9319201-9319281 ( 42) CGGGACCC 1 chrI:2905767-2905847 ( 60) CGAGACCA 1 chrI:7914740-7914820 ( 59) CGAGACCA 1 chrV:11917341-11917421 ( 68) CGAGACCA 1 chrI:6758766-6758846 ( 15) CGAGACCA 1 chrI:7984830-7984910 ( 10) CGAGACCA 1 chrIV:11038358-11038438 ( 45) CGAGACCA 1 chrII:6860186-6860266 ( 58) CGAGACCA 1 chrIII:9566129-9566209 ( 29) CGAGACCT 1 chrIII:13561376-13561456 ( 40) CGAGACCT 1 chrI:180060-180140 ( 3) CGAGACCT 1 chrIII:4891148-4891228 ( 29) CGAGACCT 1 chrV:8521205-8521285 ( 30) CGAGACCT 1 chrI:8531586-8531666 ( 23) CGAAACCC 1 chrII:4320622-4320702 ( 33) CGAAACCC 1 chrIV:829844-829924 ( 18) CGAAACCC 1 chrII:5465904-5465984 ( 4) CGAAACCC 1 chrIII:10442727-10442807 ( 9) TGAGACCC 1 chrI:10808354-10808434 ( 59) TGAGACCC 1 chrI:2586783-2586863 ( 32) TGAGACCC 1 chrI:2980497-2980577 ( 37) TGAGACCC 1 chrIV:12127237-12127317 ( 24) CAAGACCC 1 chrIII:10469820-10469900 ( 38) CGAGTCCC 1 chrV:5514130-5514210 ( 35) CAAGACCC 1 chrIV:3212085-3212165 ( 67) CGAGGCCC 1 chrV:6268131-6268211 ( 66) CGGGACCT 1 chrIV:11498332-11498412 ( 22) CGAGACCG 1 chrIV:12805743-12805823 ( 8) CGAGACTC 1 chrV:13550097-13550177 ( 22) CGAAACCA 1 chrV:16747161-16747241 ( 70) CAGGACCC 1 chrIV:11124831-11124911 ( 44) CGGGTCCC 1 chrIII:4439759-4439839 ( 10) TGAGACCT 1 chrIV:1420765-1420845 ( 3) TGAAACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGACCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.15507 E= 3.6e-068 -1262 216 -1262 -167 -265 -1262 227 -1262 152 -1262 -47 -1262 -165 -1262 220 -1262 168 -1262 -363 -325 -1262 231 -1262 -1262 -1262 228 -1262 -425 -123 188 -363 -144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGACCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 3.6e-068 0.000000 0.904762 0.000000 0.095238 0.047619 0.000000 0.952381 0.000000 0.857143 0.000000 0.142857 0.000000 0.095238 0.000000 0.904762 0.000000 0.952381 0.000000 0.015873 0.031746 0.000000 1.000000 0.000000 0.000000 0.000000 0.984127 0.000000 0.015873 0.126984 0.746032 0.015873 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGACCC MEME-3 regular expression -------------------------------------------------------------------------------- CGAGACCC -------------------------------------------------------------------------------- Time 13.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGGCGC MEME-4 width = 8 sites = 48 llr = 492 E-value = 1.1e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 9aa:::1: pos.-specific C 1::::a:9 probability G :::a9:9: matrix T :::::::: bits 2.3 * 2.1 * * 1.9 ***** 1.6 ******* Relative 1.4 ******** Entropy 1.2 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAGGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13660274-13660354 32 8.26e-06 GGTATAATTT AAAGGCGC GTAGTAGAAT chrV:1701744-1701824 1 8.26e-06 . AAAGGCGC ACACACAAAA chrI:2432304-2432384 18 8.26e-06 GTACTTTCTT AAAGGCGC ACTCCTCATT chrIII:10870325-10870405 9 8.26e-06 gacctttt aaaggcgc acgtgttttt chrI:2905767-2905847 28 8.26e-06 CAGTAACCTT AAAGGCGC ACGCCTTGAA chrI:4608501-4608581 73 8.26e-06 agtactcttt aaaggcgc chrIV:1708159-1708239 9 8.26e-06 tacccttt aaaggcgc acacccgttt chrII:4604870-4604950 23 8.26e-06 tgtactcttt aaaggcgc acacctttGA chrIII:11534851-11534931 3 8.26e-06 TT AAAGGCGC AGCTCGCAAA chrV:7877234-7877314 16 8.26e-06 GGTATTTATT AAAGGCGC ATCCAGGATT chrII:5465904-5465984 36 8.26e-06 CCACCAAACT AAAGGCGC AGGCCCGGCG chrII:14778237-14778317 32 8.26e-06 CGTAAGACTT AAAGGCGC ACGTGCAAAA chrI:7914740-7914820 18 8.26e-06 CAGTAACCTT AAAGGCGC ACACACAATT chrIII:10469820-10469900 12 8.26e-06 GTATCTTTTT AAAGGCGC ACGAACTAAT chrIII:10330804-10330884 41 8.26e-06 ACATAAATTT AAAGGCGC ATATGTTATT chrV:5046730-5046810 44 8.26e-06 CCAACCCTTC AAAGGCGC ACGGATTTTC chrV:11917341-11917421 28 8.26e-06 CAGTAATCCT AAAGGCGC ACACACAAAA chrIII:3471128-3471208 4 8.26e-06 CTT AAAGGCGC GCCTCAAGAA chrI:715957-716037 47 8.26e-06 GTAGTAATTT AAAGGCGC ATACCTCGAA chrI:6089446-6089526 25 8.26e-06 CGGTTTGAAA AAAGGCGC ATGCCACTAT chrI:5511855-5511935 18 8.26e-06 TATCCTATTT AAAGGCGC ATACGGTCAA chrV:5666478-5666558 32 8.26e-06 agtaatcttt aaaggcgc acaggtttat chrV:20476624-20476704 30 8.26e-06 AAGAAACATC AAAGGCGC ATAGCTGCCA chrIV:10858445-10858525 53 8.26e-06 AACTAGCATT AAAGGCGC ATATGGTTCA chrI:10798348-10798428 26 8.26e-06 gtaccccttt aaaggcgc acgccacttt chrIII:3534343-3534423 20 8.26e-06 CCCCGAACGT AAAGGCGC ATCCCTAATT chrV:19125440-19125520 34 8.26e-06 CGGTCGGTTT AAAGGCGC ATAACTCGAA chrIV:4751974-4752054 34 8.26e-06 CGGTCTCTTT AAAGGCGC AACCGAAAAA chrI:7352191-7352271 45 8.26e-06 TGATATATTT AAAGGCGC GTGTTTTTAA chrII:11536652-11536732 16 8.26e-06 GTAATCCTTT AAAGGCGC ACACCTCTTT chrV:6268131-6268211 33 8.26e-06 GTCATAATTT AAAGGCGC GTGAGCGAAA chrIV:10546732-10546812 51 8.26e-06 CGTATGCATT AAAGGCGC ATCACACATT chrIII:13755861-13755941 8 1.39e-05 TGTTTTT CAAGGCGC GCGCATTGAA chrIII:12316719-12316799 56 1.39e-05 AACAAGTGCG CAAGGCGC GAAACTTGTT chrII:8253323-8253403 27 1.39e-05 GTGGTTCACG CAAGGCGC ATTGCACACT chrII:4888640-4888720 47 2.63e-05 CGGTCGGTTT AAAGGCAC AGAAGGAAAA chrIII:13104565-13104645 53 2.63e-05 GTAAGAACTT AAAGGCAC ATGCATTAAT chrI:6007763-6007843 19 2.63e-05 CCATTTCTTT AAAGGCAC ACACAGCTAA chrV:3204594-3204674 7 3.18e-05 TTTTTT GAAGGCGC ATGGCTGAAT chrII:4566392-4566472 41 3.73e-05 CGTAGTCTTT AGAGGCGC ATAGTTCAAG chrII:13260706-13260786 9 7.41e-05 CCACATTT AAAGGAGC ACGCACTTCT chrV:16059023-16059103 42 7.41e-05 GAAATGCGAA AAAGACGC GCGCGGGGGT chrI:4210431-4210511 22 7.41e-05 TGTAGTTTTT AAAGGAGC ATAGCTAAAT chrIV:6347949-6348029 39 7.41e-05 ATTTCGCGAG AAAGGCGA AAACTATATG chrIV:15029708-15029788 28 7.41e-05 ttgcgggaga aaagacgc agacttttca chrIV:14455262-14455342 38 7.41e-05 ATCGAACACT AAAGGCGA TGCGCCTTTA chrIV:829844-829924 8 9.91e-05 aatGAGT AAAGGCGT GGCGAAACCC chrIV:11038358-11038438 35 9.91e-05 TACAACAATG AAAGTCGC GTCGAGACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13660274-13660354 8.3e-06 31_[+4]_41 chrV:1701744-1701824 8.3e-06 [+4]_72 chrI:2432304-2432384 8.3e-06 17_[+4]_55 chrIII:10870325-10870405 8.3e-06 8_[+4]_64 chrI:2905767-2905847 8.3e-06 27_[+4]_45 chrI:4608501-4608581 8.3e-06 72_[+4] chrIV:1708159-1708239 8.3e-06 8_[+4]_64 chrII:4604870-4604950 8.3e-06 22_[+4]_50 chrIII:11534851-11534931 8.3e-06 2_[+4]_70 chrV:7877234-7877314 8.3e-06 15_[+4]_57 chrII:5465904-5465984 8.3e-06 35_[+4]_37 chrII:14778237-14778317 8.3e-06 31_[+4]_41 chrI:7914740-7914820 8.3e-06 17_[+4]_55 chrIII:10469820-10469900 8.3e-06 11_[+4]_61 chrIII:10330804-10330884 8.3e-06 40_[+4]_32 chrV:5046730-5046810 8.3e-06 43_[+4]_29 chrV:11917341-11917421 8.3e-06 27_[+4]_45 chrIII:3471128-3471208 8.3e-06 3_[+4]_69 chrI:715957-716037 8.3e-06 46_[+4]_26 chrI:6089446-6089526 8.3e-06 24_[+4]_48 chrI:5511855-5511935 8.3e-06 17_[+4]_55 chrV:5666478-5666558 8.3e-06 31_[+4]_41 chrV:20476624-20476704 8.3e-06 29_[+4]_43 chrIV:10858445-10858525 8.3e-06 52_[+4]_20 chrI:10798348-10798428 8.3e-06 25_[+4]_47 chrIII:3534343-3534423 8.3e-06 19_[+4]_53 chrV:19125440-19125520 8.3e-06 33_[+4]_39 chrIV:4751974-4752054 8.3e-06 33_[+4]_39 chrI:7352191-7352271 8.3e-06 44_[+4]_28 chrII:11536652-11536732 8.3e-06 15_[+4]_57 chrV:6268131-6268211 8.3e-06 32_[+4]_40 chrIV:10546732-10546812 8.3e-06 50_[+4]_22 chrIII:13755861-13755941 1.4e-05 7_[+4]_65 chrIII:12316719-12316799 1.4e-05 55_[+4]_17 chrII:8253323-8253403 1.4e-05 26_[+4]_46 chrII:4888640-4888720 2.6e-05 46_[+4]_26 chrIII:13104565-13104645 2.6e-05 52_[+4]_20 chrI:6007763-6007843 2.6e-05 18_[+4]_54 chrV:3204594-3204674 3.2e-05 6_[+4]_66 chrII:4566392-4566472 3.7e-05 40_[+4]_32 chrII:13260706-13260786 7.4e-05 8_[+4]_64 chrV:16059023-16059103 7.4e-05 41_[+4]_31 chrI:4210431-4210511 7.4e-05 21_[+4]_51 chrIV:6347949-6348029 7.4e-05 38_[+4]_34 chrIV:15029708-15029788 7.4e-05 27_[+4]_45 chrIV:14455262-14455342 7.4e-05 37_[+4]_35 chrIV:829844-829924 9.9e-05 7_[+4]_65 chrIV:11038358-11038438 9.9e-05 34_[+4]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGGCGC width=8 seqs=48 chrV:13660274-13660354 ( 32) AAAGGCGC 1 chrV:1701744-1701824 ( 1) AAAGGCGC 1 chrI:2432304-2432384 ( 18) AAAGGCGC 1 chrIII:10870325-10870405 ( 9) AAAGGCGC 1 chrI:2905767-2905847 ( 28) AAAGGCGC 1 chrI:4608501-4608581 ( 73) AAAGGCGC 1 chrIV:1708159-1708239 ( 9) AAAGGCGC 1 chrII:4604870-4604950 ( 23) AAAGGCGC 1 chrIII:11534851-11534931 ( 3) AAAGGCGC 1 chrV:7877234-7877314 ( 16) AAAGGCGC 1 chrII:5465904-5465984 ( 36) AAAGGCGC 1 chrII:14778237-14778317 ( 32) AAAGGCGC 1 chrI:7914740-7914820 ( 18) AAAGGCGC 1 chrIII:10469820-10469900 ( 12) AAAGGCGC 1 chrIII:10330804-10330884 ( 41) AAAGGCGC 1 chrV:5046730-5046810 ( 44) AAAGGCGC 1 chrV:11917341-11917421 ( 28) AAAGGCGC 1 chrIII:3471128-3471208 ( 4) AAAGGCGC 1 chrI:715957-716037 ( 47) AAAGGCGC 1 chrI:6089446-6089526 ( 25) AAAGGCGC 1 chrI:5511855-5511935 ( 18) AAAGGCGC 1 chrV:5666478-5666558 ( 32) AAAGGCGC 1 chrV:20476624-20476704 ( 30) AAAGGCGC 1 chrIV:10858445-10858525 ( 53) AAAGGCGC 1 chrI:10798348-10798428 ( 26) AAAGGCGC 1 chrIII:3534343-3534423 ( 20) AAAGGCGC 1 chrV:19125440-19125520 ( 34) AAAGGCGC 1 chrIV:4751974-4752054 ( 34) AAAGGCGC 1 chrI:7352191-7352271 ( 45) AAAGGCGC 1 chrII:11536652-11536732 ( 16) AAAGGCGC 1 chrV:6268131-6268211 ( 33) AAAGGCGC 1 chrIV:10546732-10546812 ( 51) AAAGGCGC 1 chrIII:13755861-13755941 ( 8) CAAGGCGC 1 chrIII:12316719-12316799 ( 56) CAAGGCGC 1 chrII:8253323-8253403 ( 27) CAAGGCGC 1 chrII:4888640-4888720 ( 47) AAAGGCAC 1 chrIII:13104565-13104645 ( 53) AAAGGCAC 1 chrI:6007763-6007843 ( 19) AAAGGCAC 1 chrV:3204594-3204674 ( 7) GAAGGCGC 1 chrII:4566392-4566472 ( 41) AGAGGCGC 1 chrII:13260706-13260786 ( 9) AAAGGAGC 1 chrV:16059023-16059103 ( 42) AAAGACGC 1 chrI:4210431-4210511 ( 22) AAAGGAGC 1 chrIV:6347949-6348029 ( 39) AAAGGCGA 1 chrIV:15029708-15029788 ( 28) AAAGACGC 1 chrIV:14455262-14455342 ( 38) AAAGGCGA 1 chrIV:829844-829924 ( 8) AAAGGCGT 1 chrIV:11038358-11038438 ( 35) AAAGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.01532 E= 1.1e-056 162 -169 -324 -1223 172 -1223 -324 -1223 175 -1223 -1223 -1223 -1223 -1223 234 -1223 -284 -1223 225 -385 -284 224 -1223 -1223 -225 -1223 225 -1223 -284 221 -1223 -385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.1e-056 0.916667 0.062500 0.020833 0.000000 0.979167 0.000000 0.020833 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.041667 0.000000 0.937500 0.020833 0.041667 0.958333 0.000000 0.000000 0.062500 0.000000 0.937500 0.000000 0.041667 0.937500 0.000000 0.020833 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGCGC MEME-4 regular expression -------------------------------------------------------------------------------- AAAGGCGC -------------------------------------------------------------------------------- Time 16.77 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTCTCG MEME-5 width = 8 sites = 37 llr = 366 E-value = 5.6e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C 1:::a19: probability G 6aa::::a matrix T 2::a:91: bits 2.3 ** 2.1 ** * * 1.9 ** * * 1.6 **** ** Relative 1.4 ******* Entropy 1.2 ******* (14.3 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGTCTCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5543203-5543283 55 5.61e-06 TGAGAGCATT GGGTCTCG CCACGATCCG chrIII:10870325-10870405 33 5.61e-06 ttttcaagat gggtctcg cagcgaaaaa chrII:1306715-1306795 28 5.61e-06 TTTCACTGTT GGGTCTCG CCACGCTCAG chrIII:5958689-5958769 29 5.61e-06 TTCAGTCGAC GGGTCTCG TTACGATTAC chrIII:5988622-5988702 18 5.61e-06 AACTCACAGC GGGTCTCG CAGCGAAAAG chrV:8355603-8355683 25 5.61e-06 TTAGTTCTGC GGGTCTCG TACCGAAGTT chrIV:183702-183782 46 5.61e-06 TCTCTTCCCC GGGTCTCG AAGCGATTGA chrIII:8492115-8492195 17 5.61e-06 TTTCCTTCAT GGGTCTCG CCGCGAAATA chrII:12036242-12036322 6 5.61e-06 accta gggtctcg aagcgacaca chrII:12808928-12809008 58 5.61e-06 AATATGCAGC GGGTCTCG TCACGAAAAC chrIV:13311481-13311561 42 5.61e-06 TAACGACCGC GGGTCTCG CAGCGACTTT chrV:20476624-20476704 57 5.61e-06 AACGTGTCAT GGGTCTCG CAGCGAAGCA chrII:4566392-4566472 68 5.61e-06 GCTCTAGAGA GGGTCTCG ACACG chrII:7690575-7690655 25 5.61e-06 TTGAAGGCAT GGGTCTCG AAGCGAAAAA chrIII:4987811-4987891 50 5.61e-06 ttattcggat gggtctcg acgcgaaaaa chrII:7394459-7394539 12 1.42e-05 TAATGCGGAG TGGTCTCG ACACGCGCGA chrII:13260706-13260786 33 1.42e-05 TTCTACTGAA TGGTCTCG GCACGCTAAC chrII:11974199-11974279 40 1.42e-05 GGGAggtcac tggtctcg acacgacagt chrII:14778237-14778317 60 1.42e-05 ATATGCTAGT TGGTCTCG CCACGATTTG chrIV:12047714-12047794 22 1.42e-05 AACTTGAGTC TGGTCTCG CAACGACTTG chrIII:13755861-13755941 35 2.27e-05 AACCTGCGAC AGGTCTCG ACACGATCTA chrIV:11660078-11660158 60 2.27e-05 ttacggtgcc aggtctcg gcacgacaag chrIII:11534851-11534931 31 2.27e-05 TCGAGCGGTT AGGTCTCG CCGCGATATG chrV:7877234-7877314 42 2.27e-05 TTTTTTAGTA AGGTCTCG CCACGAGTTA chrIV:2276734-2276814 8 2.27e-05 TTGTGGG AGGTCTCG CCACGACAGC chrIV:4751974-4752054 61 2.27e-05 AAGTTCGCGC AGGTCTCG TCACGAATAC chrV:13660274-13660354 60 4.06e-05 TTACATAATT GGGTCCCG CAGGGAAAGC chrII:10783707-10783787 33 4.06e-05 CAGAAGGCAA GGGTCTTG CAGCGATTCA chrIV:10157179-10157259 52 4.06e-05 AGCGTCGCTG CGGTCTCG TAGCGATGTG chrV:9993216-9993296 18 4.06e-05 GTTGGGACCA CGGTCTCG CGGGTGATGA chrV:2691140-2691220 69 4.06e-05 caagtgCGGC GGGTCTTG GCGC chrV:5666478-5666558 56 4.06e-05 ttattccaat gggtcttg gcgcgaacaa chrI:2004017-2004097 16 4.88e-05 AAAATTTTGT GGGTCTAG AAAATAATAA chrII:7758914-7758994 7 8.43e-05 GCCGAA TGGTCTTG CCGCGCGCAC chrI:4210431-4210511 49 8.43e-05 TTGTCACTTG TGGTCCCG CATAGAACAA chrIV:11298313-11298393 57 8.43e-05 ATTTATTTTT GGGTTTCG CAACGAGTTT chrIV:2223285-2223365 3 8.43e-05 GT GGGTCTCA CAGCGAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5543203-5543283 5.6e-06 54_[+5]_18 chrIII:10870325-10870405 5.6e-06 32_[+5]_40 chrII:1306715-1306795 5.6e-06 27_[+5]_45 chrIII:5958689-5958769 5.6e-06 28_[+5]_44 chrIII:5988622-5988702 5.6e-06 17_[+5]_55 chrV:8355603-8355683 5.6e-06 24_[+5]_48 chrIV:183702-183782 5.6e-06 45_[+5]_27 chrIII:8492115-8492195 5.6e-06 16_[+5]_56 chrII:12036242-12036322 5.6e-06 5_[+5]_67 chrII:12808928-12809008 5.6e-06 57_[+5]_15 chrIV:13311481-13311561 5.6e-06 41_[+5]_31 chrV:20476624-20476704 5.6e-06 56_[+5]_16 chrII:4566392-4566472 5.6e-06 67_[+5]_5 chrII:7690575-7690655 5.6e-06 24_[+5]_48 chrIII:4987811-4987891 5.6e-06 49_[+5]_23 chrII:7394459-7394539 1.4e-05 11_[+5]_61 chrII:13260706-13260786 1.4e-05 32_[+5]_40 chrII:11974199-11974279 1.4e-05 39_[+5]_33 chrII:14778237-14778317 1.4e-05 59_[+5]_13 chrIV:12047714-12047794 1.4e-05 21_[+5]_51 chrIII:13755861-13755941 2.3e-05 34_[+5]_38 chrIV:11660078-11660158 2.3e-05 59_[+5]_13 chrIII:11534851-11534931 2.3e-05 30_[+5]_42 chrV:7877234-7877314 2.3e-05 41_[+5]_31 chrIV:2276734-2276814 2.3e-05 7_[+5]_65 chrIV:4751974-4752054 2.3e-05 60_[+5]_12 chrV:13660274-13660354 4.1e-05 59_[+5]_13 chrII:10783707-10783787 4.1e-05 32_[+5]_40 chrIV:10157179-10157259 4.1e-05 51_[+5]_21 chrV:9993216-9993296 4.1e-05 17_[+5]_55 chrV:2691140-2691220 4.1e-05 68_[+5]_4 chrV:5666478-5666558 4.1e-05 55_[+5]_17 chrI:2004017-2004097 4.9e-05 15_[+5]_57 chrII:7758914-7758994 8.4e-05 6_[+5]_66 chrI:4210431-4210511 8.4e-05 48_[+5]_24 chrIV:11298313-11298393 8.4e-05 56_[+5]_16 chrIV:2223285-2223365 8.4e-05 2_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTCTCG width=8 seqs=37 chrIII:5543203-5543283 ( 55) GGGTCTCG 1 chrIII:10870325-10870405 ( 33) GGGTCTCG 1 chrII:1306715-1306795 ( 28) GGGTCTCG 1 chrIII:5958689-5958769 ( 29) GGGTCTCG 1 chrIII:5988622-5988702 ( 18) GGGTCTCG 1 chrV:8355603-8355683 ( 25) GGGTCTCG 1 chrIV:183702-183782 ( 46) GGGTCTCG 1 chrIII:8492115-8492195 ( 17) GGGTCTCG 1 chrII:12036242-12036322 ( 6) GGGTCTCG 1 chrII:12808928-12809008 ( 58) GGGTCTCG 1 chrIV:13311481-13311561 ( 42) GGGTCTCG 1 chrV:20476624-20476704 ( 57) GGGTCTCG 1 chrII:4566392-4566472 ( 68) GGGTCTCG 1 chrII:7690575-7690655 ( 25) GGGTCTCG 1 chrIII:4987811-4987891 ( 50) GGGTCTCG 1 chrII:7394459-7394539 ( 12) TGGTCTCG 1 chrII:13260706-13260786 ( 33) TGGTCTCG 1 chrII:11974199-11974279 ( 40) TGGTCTCG 1 chrII:14778237-14778317 ( 60) TGGTCTCG 1 chrIV:12047714-12047794 ( 22) TGGTCTCG 1 chrIII:13755861-13755941 ( 35) AGGTCTCG 1 chrIV:11660078-11660158 ( 60) AGGTCTCG 1 chrIII:11534851-11534931 ( 31) AGGTCTCG 1 chrV:7877234-7877314 ( 42) AGGTCTCG 1 chrIV:2276734-2276814 ( 8) AGGTCTCG 1 chrIV:4751974-4752054 ( 61) AGGTCTCG 1 chrV:13660274-13660354 ( 60) GGGTCCCG 1 chrII:10783707-10783787 ( 33) GGGTCTTG 1 chrIV:10157179-10157259 ( 52) CGGTCTCG 1 chrV:9993216-9993296 ( 18) CGGTCTCG 1 chrV:2691140-2691220 ( 69) GGGTCTTG 1 chrV:5666478-5666558 ( 56) GGGTCTTG 1 chrI:2004017-2004097 ( 16) GGGTCTAG 1 chrII:7758914-7758994 ( 7) TGGTCTTG 1 chrI:4210431-4210511 ( 49) TGGTCCCG 1 chrIV:11298313-11298393 ( 57) GGGTTTCG 1 chrIV:2223285-2223365 ( 3) GGGTCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 5.6e-030 -88 -190 159 -68 -1185 -1185 234 -1185 -1185 -1185 234 -1185 -1185 -1185 -1185 173 -1185 227 -1185 -348 -1185 -190 -1185 165 -346 210 -1185 -148 -346 -1185 230 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 5.6e-030 0.162162 0.054054 0.594595 0.189189 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.972973 0.000000 0.027027 0.000000 0.054054 0.000000 0.945946 0.027027 0.864865 0.000000 0.108108 0.027027 0.000000 0.972973 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-5 regular expression -------------------------------------------------------------------------------- GGGTCTCG -------------------------------------------------------------------------------- Time 19.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4004743-4004823 5.25e-01 80 chrV:16950185-16950265 3.35e-01 80 chrIII:3127346-3127426 9.57e-01 80 chrV:8521205-8521285 2.39e-05 29_[+3(2.66e-05)]_18_[+1(2.20e-05)]_\ 17 chrI:9127088-9127168 6.64e-01 80 chrIII:6283206-6283286 2.27e-01 80 chrV:11921819-11921899 5.16e-01 80 chrIV:11498332-11498412 7.75e-05 21_[+3(7.90e-05)]_18_[+1(2.20e-05)]_\ 25 chrV:4552545-4552625 2.51e-05 15_[+3(5.74e-06)]_37_[+2(8.92e-05)]_\ 12 chrV:18137840-18137920 6.70e-05 22_[+3(5.74e-06)]_19_[+1(7.73e-05)]_\ 23 chrIV:4188073-4188153 6.81e-01 80 chrIV:8205809-8205889 2.89e-04 23_[+1(8.81e-06)]_6_[+2(1.25e-05)]_\ 35 chrI:13368276-13368356 5.87e-01 80 chrIV:11124831-11124911 1.54e-04 44_[+5(4.06e-05)]_28 chrI:7244867-7244947 9.73e-01 80 chrII:9289294-9289374 9.59e-01 80 chrI:8412611-8412691 1.58e-05 17_[+3(5.74e-06)]_18_[+1(2.20e-05)]_\ 29 chrIII:4987811-4987891 3.23e-05 49_[+5(5.61e-06)]_23 chrII:3808788-3808868 1.21e-01 80 chrV:5514130-5514210 8.98e-04 34_[+3(5.83e-05)]_18_[+1(8.81e-06)]_\ 12 chrX:182401-182481 1.00e+00 80 chrII:9842290-9842370 1.71e-02 80 chrI:12539648-12539728 2.55e-04 46_[+3(5.74e-06)]_18_[+1(8.81e-06)] chrI:5859789-5859869 9.00e-01 80 chrV:7981136-7981216 9.29e-03 58_[+1(8.81e-06)]_14 chrIV:14455262-14455342 2.23e-06 19_[+3(5.74e-06)]_10_[+4(7.41e-05)]_\ [+1(8.81e-06)]_27 chrIV:10546732-10546812 6.84e-03 50_[+4(8.26e-06)]_22 chrI:1977909-1977989 6.07e-01 80 chrII:7690575-7690655 9.36e-06 24_[+5(5.61e-06)]_16_[+2(1.25e-05)]_\ 24 chrV:4195440-4195520 5.54e-04 6_[+1(6.37e-05)]_36_[+3(5.74e-06)]_\ 22 chrIII:12880873-12880953 9.58e-01 80 chrII:6860186-6860266 8.84e-04 28_[+2(8.92e-05)]_21_[+3(1.80e-05)]_\ 15 chrI:2980497-2980577 3.04e-05 18_[+2(5.71e-05)]_10_[+3(4.38e-05)]_\ 18_[+1(8.81e-06)]_10 chrII:3934246-3934326 1.88e-03 45_[+3(5.74e-06)]_15_[+1(7.73e-05)]_\ 4 chrIV:12618114-12618194 3.46e-01 80 chrIII:2461218-2461298 1.82e-03 23_[+1(8.81e-06)]_49 chrIV:5486447-5486527 9.89e-01 80 chrV:6268131-6268211 3.91e-05 15_[+2(5.71e-05)]_9_[+4(8.26e-06)]_\ 25_[+3(7.34e-05)]_7 chrIV:1420765-1420845 3.00e-01 80 chrII:11536652-11536732 4.21e-03 15_[+4(8.26e-06)]_57 chrI:7352191-7352271 3.03e-04 24_[+2(8.92e-05)]_12_[+4(8.26e-06)]_\ 28 chrII:1153423-1153503 1.47e-01 80 chrIII:2782013-2782093 4.86e-01 80 chrII:4566392-4566472 8.39e-06 27_[+2(2.53e-05)]_5_[+4(3.73e-05)]_\ 19_[+5(5.61e-06)]_5 chrIV:2223285-2223365 1.57e-05 2_[+5(8.43e-05)]_27_[+1(8.81e-06)]_\ 6_[+2(5.71e-05)]_21 chrI:6368122-6368202 3.45e-01 80 chrII:437435-437515 7.37e-01 80 chrV:13193811-13193891 2.88e-05 18_[+3(5.74e-06)]_15_[+1(5.02e-05)]_\ 31 chrV:19771015-19771095 4.11e-02 32_[+2(1.25e-05)]_40 chrIV:4751974-4752054 6.61e-05 33_[+4(8.26e-06)]_19_[+5(2.27e-05)]_\ 12 chrV:19125440-19125520 2.69e-03 33_[+4(8.26e-06)]_39 chrIV:11298313-11298393 1.43e-03 15_[+2(5.71e-05)]_33_[+5(8.43e-05)]_\ 16 chrI:398493-398573 1.09e-03 58_[+1(8.81e-06)]_14 chrIII:5047886-5047966 2.65e-02 80 chrV:16747161-16747241 8.21e-02 80 chrII:3546657-3546737 2.23e-02 80 chrII:2815172-2815252 9.85e-02 60_[+2(5.71e-05)]_12 chrIII:3534343-3534423 9.28e-06 2_[+2(8.92e-05)]_9_[+4(8.26e-06)]_\ 33_[+1(8.81e-06)]_12 chrV:4692729-4692809 2.03e-01 80 chrIII:4891148-4891228 7.92e-04 28_[+3(2.66e-05)]_44 chrI:8309277-8309357 3.12e-06 28_[+3(5.74e-06)]_33_[+2(8.92e-05)]_\ 3 chrI:10798348-10798428 3.08e-04 25_[+4(8.26e-06)]_47 chrII:4222560-4222640 1.01e-03 9_[+1(8.81e-06)]_9_[+2(5.71e-05)]_\ 46 chrI:4653268-4653348 1.09e-03 36_[+1(8.81e-06)]_36 chrIII:8831514-8831594 3.46e-03 38_[+1(7.73e-05)]_34 chrIV:15029708-15029788 2.12e-01 27_[+4(7.41e-05)]_45 chrI:2004017-2004097 2.83e-02 15_[+5(4.88e-05)]_57 chrIV:10858445-10858525 2.65e-03 52_[+4(8.26e-06)]_20 chrII:4460431-4460511 5.59e-04 53_[+2(1.25e-05)]_19 chrIII:2101425-2101505 9.13e-01 80 chrIV:11038358-11038438 2.27e-05 34_[+4(9.91e-05)]_2_[+3(1.80e-05)]_\ 17_[+1(8.81e-06)]_3 chrX:12283066-12283146 9.06e-01 80 chrV:20476624-20476704 8.71e-07 29_[+4(8.26e-06)]_19_[+5(5.61e-06)]_\ 16 chrIV:10242588-10242668 2.83e-01 80 chrIII:311348-311428 7.60e-02 80 chrI:12483762-12483842 8.27e-02 80 chrV:14293995-14294075 8.02e-01 80 chrV:5666478-5666558 4.21e-05 31_[+4(8.26e-06)]_16_[+5(4.06e-05)]_\ 17 chrII:4236144-4236224 2.93e-01 80 chrI:180060-180140 4.72e-05 2_[+3(2.66e-05)]_18_[+1(8.81e-06)]_\ 44 chrIII:4439759-4439839 3.19e-03 32_[+1(5.02e-05)]_40 chrV:19916159-19916239 1.88e-01 80 chrI:7984830-7984910 4.45e-03 9_[+3(1.80e-05)]_63 chrIV:13104907-13104987 8.61e-01 80 chrII:13575203-13575283 9.06e-01 80 chrI:5511855-5511935 2.99e-04 17_[+4(8.26e-06)]_55 chrII:7098746-7098826 9.60e-04 24_[+1(7.73e-05)]_11_[+2(1.25e-05)]_\ 29 chrIV:6347949-6348029 2.39e-01 38_[+4(7.41e-05)]_34 chrII:10863429-10863509 3.55e-03 32_[+1(8.81e-06)]_40 chrII:9319201-9319281 7.48e-06 41_[+3(9.53e-06)]_18_[+1(8.81e-06)]_\ 5 chrIV:1051931-1052011 2.11e-02 2_[+1(8.81e-06)]_70 chrI:6758766-6758846 2.18e-04 14_[+3(1.80e-05)]_17_[+1(7.73e-05)]_\ 33 chrIV:13311481-13311561 4.27e-03 41_[+5(5.61e-06)]_31 chrV:4963687-4963767 7.43e-03 14_[+2(1.25e-05)]_58 chrI:6089446-6089526 1.61e-03 24_[+4(8.26e-06)]_48 chrV:17924536-17924616 9.62e-01 80 chrV:3204594-3204674 8.96e-06 6_[+4(3.18e-05)]_14_[+4(9.91e-05)]_\ 2_[+3(5.74e-06)]_19_[+1(3.69e-05)]_7 chrV:4637336-4637416 8.24e-01 80 chrV:14594304-14594384 8.19e-01 80 chrI:12647109-12647189 8.44e-01 80 chrV:11787906-11787986 2.65e-04 17_[+2(8.92e-05)]_15_[+3(9.53e-06)]_\ 32 chrI:715957-716037 2.58e-03 32_[+2(5.71e-05)]_6_[+4(8.26e-06)]_\ 26 chrII:7065556-7065636 7.55e-01 80 chrI:4210431-4210511 1.13e-04 21_[+4(7.41e-05)]_19_[+5(8.43e-05)]_\ 12_[+2(5.71e-05)]_4 chrV:969204-969284 9.95e-01 80 chrI:2586783-2586863 1.07e-04 31_[+3(4.38e-05)]_19_[+1(8.81e-06)]_\ 14 chrIII:13561376-13561456 2.40e-04 39_[+3(2.66e-05)]_19_[+1(8.81e-06)]_\ 6 chrV:16059023-16059103 1.74e-01 41_[+4(7.41e-05)]_31 chrIV:12805743-12805823 7.14e-05 7_[+3(9.90e-05)]_18_[+1(3.69e-05)]_\ 39 chrV:13009401-13009481 2.40e-02 37_[+2(5.71e-05)]_35 chrIII:3471128-3471208 4.73e-06 3_[+4(8.26e-06)]_34_[+3(5.74e-06)]_\ 19_[+1(3.10e-05)] chrIII:12575539-12575619 9.63e-01 80 chrI:1446181-1446261 9.72e-02 80 chrI:6954256-6954336 3.58e-04 16_[+3(5.74e-06)]_18_[+1(3.69e-05)]_\ 30 chrII:6782119-6782199 3.41e-01 80 chrII:5497733-5497813 5.24e-01 80 chrIII:11195313-11195393 1.17e-02 80 chrI:9544417-9544497 9.22e-01 80 chrV:13550097-13550177 3.84e-02 80 chrV:11917341-11917421 2.58e-05 27_[+4(8.26e-06)]_32_[+3(1.80e-05)]_\ 5 chrIV:10985710-10985790 3.32e-01 80 chrV:5046730-5046810 1.25e-05 27_[+3(5.74e-06)]_8_[+4(8.26e-06)]_\ 29 chrV:4374742-4374822 3.81e-01 80 chrI:10808354-10808434 6.95e-03 58_[+3(4.38e-05)]_14 chrIII:10442727-10442807 5.16e-05 8_[+3(4.38e-05)]_19_[+1(8.81e-06)]_\ 37 chrI:7985083-7985163 3.46e-01 80 chrV:6702868-6702948 9.90e-01 80 chrII:11241636-11241716 3.66e-01 53_[+2(8.92e-05)]_19 chrV:15065952-15066032 9.99e-01 80 chrIII:6140945-6141025 8.98e-01 80 chrI:4114600-4114680 1.72e-01 80 chrIII:10330804-10330884 4.89e-03 40_[+4(8.26e-06)]_32 chrV:10049611-10049691 5.58e-02 80 chrIV:12047714-12047794 2.51e-04 21_[+5(1.42e-05)]_22_[+1(8.81e-06)]_\ 21 chrV:16055188-16055268 6.61e-01 80 chrV:17658984-17659064 1.50e-01 80 chrV:2691140-2691220 2.01e-02 68_[+5(4.06e-05)]_4 chrIV:11470371-11470451 1.47e-03 21_[+1(8.81e-06)]_51 chrII:12808928-12809008 1.68e-04 57_[+5(5.61e-06)]_15 chrIII:5209153-5209233 1.95e-03 38_[+1(8.81e-06)]_34 chrI:13839345-13839425 6.01e-05 25_[+3(5.74e-06)]_37_[+2(8.92e-05)]_\ 2 chrIII:10469820-10469900 1.29e-04 11_[+4(8.26e-06)]_18_[+3(5.83e-05)]_\ 35 chrI:10881232-10881312 9.51e-02 60_[+1(9.80e-05)]_12 chrII:12036242-12036322 7.71e-06 5_[+5(5.61e-06)]_27_[+1(8.81e-06)]_\ 32 chrII:13130707-13130787 8.31e-01 80 chrIV:11142951-11143031 2.09e-01 80 chrII:4525338-4525418 1.73e-01 80 chrIII:8492115-8492195 7.86e-05 16_[+5(5.61e-06)]_56 chrI:6007763-6007843 2.18e-03 18_[+4(2.63e-05)]_54 chrII:8127957-8128037 7.74e-06 37_[+3(5.74e-06)]_15_[+1(8.81e-06)]_\ 12 chrI:7914740-7914820 4.85e-05 17_[+4(8.26e-06)]_33_[+3(1.80e-05)]_\ 14 chrII:13695763-13695843 9.67e-01 80 chrIV:183702-183782 3.07e-05 45_[+5(5.61e-06)]_27 chrV:8355603-8355683 4.26e-04 24_[+5(5.61e-06)]_48 chrV:9993216-9993296 4.21e-03 17_[+5(4.06e-05)]_55 chrI:6573829-6573909 2.57e-06 30_[+3(5.74e-06)]_15_[+1(8.81e-06)]_\ 11_[+2(5.71e-05)] chrIII:8429180-8429260 2.63e-02 43_[+1(9.80e-05)]_29 chrII:3554800-3554880 8.62e-01 80 chrII:14778237-14778317 4.38e-06 31_[+4(8.26e-06)]_20_[+5(1.42e-05)]_\ 13 chrIV:10157179-10157259 3.77e-04 51_[+5(4.06e-05)]_21 chrIII:12457347-12457427 9.78e-01 80 chrIV:2276734-2276814 6.91e-02 7_[+5(2.27e-05)]_65 chrII:14125948-14126028 7.90e-01 80 chrII:5465904-5465984 2.06e-05 3_[+3(4.38e-05)]_7_[+2(8.92e-05)]_9_\ [+4(8.26e-06)]_37 chrV:7877234-7877314 5.02e-04 15_[+4(8.26e-06)]_18_[+5(2.27e-05)]_\ 31 chrIII:9566129-9566209 9.35e-06 28_[+3(2.66e-05)]_18_[+1(8.81e-06)]_\ 18 chrII:220788-220868 3.17e-01 80 chrIV:4667980-4668060 9.16e-04 47_[+1(8.81e-06)]_25 chrV:7199268-7199348 1.18e-05 39_[+1(8.81e-06)]_33 chrIII:11534851-11534931 2.75e-05 2_[+4(8.26e-06)]_20_[+5(2.27e-05)]_\ 42 chrII:8253323-8253403 7.08e-02 26_[+4(1.39e-05)]_46 chrI:1445979-1446059 1.63e-01 80 chrIII:3040869-3040949 7.24e-02 80 chrII:13043633-13043713 9.96e-01 80 chrII:8270204-8270284 3.36e-03 4_[+3(5.74e-06)]_68 chrIV:12127237-12127317 8.62e-05 23_[+3(5.83e-05)]_17_[+1(7.73e-05)]_\ 24 chrIII:13641033-13641113 2.98e-05 15_[+3(5.74e-06)]_33_[+2(1.25e-05)]_\ 16 chrIII:5406443-5406523 3.30e-01 80 chrII:4230940-4231020 9.67e-01 80 chrV:9985394-9985474 5.26e-01 80 chrIII:13104565-13104645 6.57e-03 52_[+4(2.63e-05)]_20 chrIV:829844-829924 2.19e-06 7_[+4(9.91e-05)]_2_[+3(4.38e-05)]_\ 18_[+1(8.81e-06)]_29 chrI:5411742-5411822 1.05e-03 42_[+3(5.74e-06)]_30 chrII:1501110-1501190 3.45e-07 21_[+3(9.53e-06)]_18_[+1(8.81e-06)]_\ 8_[+2(5.71e-05)]_9 chrII:4604870-4604950 1.19e-04 22_[+4(8.26e-06)]_35_[+4(8.26e-06)]_\ 7 chrII:4320622-4320702 7.34e-05 32_[+3(4.38e-05)]_17_[+1(7.73e-05)]_\ 7_[+2(1.25e-05)] chrII:7025068-7025148 2.10e-07 8_[+3(5.74e-06)]_19_[+1(8.81e-06)]_\ 4_[+2(2.53e-05)]_25 chrIII:5988622-5988702 1.95e-04 17_[+5(5.61e-06)]_32_[+1(7.73e-05)]_\ 15 chrIV:1708159-1708239 7.37e-03 8_[+4(8.26e-06)]_64 chrI:3212676-3212756 2.47e-04 25_[+3(5.74e-06)]_17_[+1(8.81e-06)]_\ 22 chrII:4301156-4301236 5.56e-01 80 chrII:11974199-11974279 2.15e-03 16_[+2(8.92e-05)]_15_[+5(1.42e-05)]_\ 33 chrI:4608501-4608581 5.89e-03 72_[+4(8.26e-06)] chrIV:2914721-2914801 1.81e-01 80 chrII:7758914-7758994 1.36e-04 6_[+5(8.43e-05)]_31_[+1(8.81e-06)]_\ 27 chrII:4375075-4375155 6.54e-01 80 chrI:2905767-2905847 4.83e-06 27_[+4(8.26e-06)]_24_[+3(1.80e-05)]_\ 13 chrII:13260706-13260786 1.78e-05 8_[+4(7.41e-05)]_16_[+5(1.42e-05)]_\ 24_[+1(2.20e-05)]_8 chrI:10349875-10349955 9.08e-01 80 chrI:3105695-3105775 9.97e-01 80 chrIII:5958689-5958769 2.09e-05 28_[+5(5.61e-06)]_7_[+2(2.53e-05)]_\ 29 chrV:9784368-9784448 8.94e-01 80 chrII:4753270-4753350 9.34e-01 80 chrI:9274753-9274833 6.85e-01 80 chrI:8484144-8484224 4.24e-01 80 chrIV:12445673-12445753 5.57e-01 80 chrIV:2783344-2783424 2.13e-04 45_[+3(5.74e-06)]_19_[+1(8.81e-06)] chrII:10853045-10853125 4.15e-04 38_[+1(8.81e-06)]_11_[+2(1.25e-05)]_\ 15 chrII:10783707-10783787 1.14e-04 32_[+5(4.06e-05)]_20_[+2(1.25e-05)]_\ 12 chrIII:2790710-2790790 2.40e-03 28_[+1(2.20e-05)]_44 chrV:16746392-16746472 6.91e-01 80 chrV:3892492-3892572 9.68e-02 80 chrII:1306715-1306795 3.48e-04 27_[+5(5.61e-06)]_45 chrII:4888640-4888720 1.01e-02 46_[+4(2.63e-05)]_26 chrV:8057963-8058043 8.35e-01 80 chrIII:10870325-10870405 3.76e-05 8_[+4(8.26e-06)]_16_[+5(5.61e-06)]_\ 40 chrIV:984237-984317 1.00e+00 80 chrIII:8479730-8479810 5.50e-01 80 chrIII:9504513-9504593 4.33e-02 80 chrI:3035615-3035695 2.31e-01 80 chrI:2156652-2156732 9.87e-01 80 chrII:14310544-14310624 6.64e-01 80 chrII:13732270-13732350 8.85e-01 80 chrII:6683084-6683164 9.75e-03 33_[+2(8.92e-05)]_39 chrI:6003096-6003176 1.44e-06 31_[+2(8.92e-05)]_6_[+3(9.53e-06)]_\ 19_[+1(8.81e-06)] chrV:2589998-2590078 7.36e-01 80 chrIII:12316719-12316799 7.84e-03 55_[+4(1.39e-05)]_17 chrI:8531586-8531666 1.35e-04 22_[+3(4.38e-05)]_18_[+1(8.81e-06)]_\ 24 chrIV:11660078-11660158 1.12e-03 59_[+5(2.27e-05)]_13 chrX:1397856-1397936 3.92e-01 80 chrI:502609-502689 4.54e-01 80 chrIV:3212085-3212165 1.85e-03 16_[+2(8.92e-05)]_42_[+3(7.34e-05)]_\ 6 chrI:1360210-1360290 7.42e-06 32_[+3(5.74e-06)]_18_[+1(8.81e-06)]_\ 14 chrIII:13755861-13755941 2.03e-05 7_[+4(1.39e-05)]_19_[+5(2.27e-05)]_\ 38 chrIV:13154793-13154873 2.19e-06 14_[+3(9.53e-06)]_18_[+1(8.81e-06)]_\ 5_[+2(8.92e-05)]_19 chrII:9647605-9647685 3.69e-05 9_[+1(2.20e-05)]_13_[+3(5.74e-06)]_\ 17_[+1(8.81e-06)]_17 chrIV:12031178-12031258 9.16e-01 80 chrV:7622199-7622279 2.11e-01 80 chrI:2432304-2432384 2.28e-04 17_[+4(8.26e-06)]_55 chrIII:5543203-5543283 6.15e-05 14_[+2(8.92e-05)]_32_[+5(5.61e-06)]_\ 18 chrIII:8852831-8852911 4.41e-01 80 chrII:11824075-11824155 3.88e-01 80 chrII:4226743-4226823 5.27e-06 29_[+3(9.53e-06)]_18_[+1(8.81e-06)]_\ 6_[+2(8.92e-05)]_3 chrV:1701744-1701824 5.74e-04 [+4(8.26e-06)]_49_[+1(6.37e-05)]_15 chrIII:3844296-3844376 2.53e-01 80 chrII:7394459-7394539 2.12e-05 11_[+5(1.42e-05)]_35_[+1(8.81e-06)]_\ 18 chrV:5203740-5203820 9.85e-01 80 chrIII:2966089-2966169 3.67e-01 80 chrV:13660274-13660354 1.09e-05 31_[+4(8.26e-06)]_20_[+5(4.06e-05)]_\ 13 chrIII:8618733-8618813 1.20e-02 29_[+3(5.74e-06)]_43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************