******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/vab-15.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:6047512-6047592 1.0000 80 chrX:9846080-9846160 1.0000 80 chrI:1588207-1588287 1.0000 80 chrX:9848379-9848459 1.0000 80 chrI:283437-283517 1.0000 80 chrIII:10526110-10526190 1.0000 80 chrI:9333202-9333282 1.0000 80 chrV:12300920-12301000 1.0000 80 chrV:14800533-14800613 1.0000 80 chrX:9848586-9848666 1.0000 80 chrIV:3826882-3826962 1.0000 80 chrX:11014591-11014671 1.0000 80 chrV:2076200-2076280 1.0000 80 chrIV:13682887-13682967 1.0000 80 chrI:4328981-4329061 1.0000 80 chrII:10147643-10147723 1.0000 80 chrIV:2083306-2083386 1.0000 80 chrII:7679775-7679855 1.0000 80 chrX:7932603-7932683 1.0000 80 chrI:7867089-7867169 1.0000 80 chrV:10557221-10557301 1.0000 80 chrX:9546770-9546850 1.0000 80 chrIII:6988221-6988301 1.0000 80 chrII:13681250-13681330 1.0000 80 chrII:12053604-12053684 1.0000 80 chrIV:9737295-9737375 1.0000 80 chrV:17728887-17728967 1.0000 80 chrI:11779160-11779240 1.0000 80 chrII:6878071-6878151 1.0000 80 chrIV:9790857-9790937 1.0000 80 chrIV:1623913-1623993 1.0000 80 chrX:15706272-15706352 1.0000 80 chrV:4694879-4694959 1.0000 80 chrI:1069507-1069587 1.0000 80 chrIV:14764103-14764183 1.0000 80 chrIII:7375699-7375779 1.0000 80 chrI:9083063-9083143 1.0000 80 chrX:13113565-13113645 1.0000 80 chrI:13395133-13395213 1.0000 80 chrV:19521820-19521900 1.0000 80 chrV:12512100-12512180 1.0000 80 chrI:2747854-2747934 1.0000 80 chrII:7090134-7090214 1.0000 80 chrI:2678213-2678293 1.0000 80 chrI:130540-130620 1.0000 80 chrX:2582344-2582424 1.0000 80 chrII:14400181-14400261 1.0000 80 chrIII:10290692-10290772 1.0000 80 chrX:16998180-16998260 1.0000 80 chrIV:6099920-6100000 1.0000 80 chrII:11440317-11440397 1.0000 80 chrX:498816-498896 1.0000 80 chrII:7323538-7323618 1.0000 80 chrII:1090889-1090969 1.0000 80 chrI:3100900-3100980 1.0000 80 chrV:7820417-7820497 1.0000 80 chrV:1383677-1383757 1.0000 80 chrX:3902229-3902309 1.0000 80 chrIV:4180022-4180102 1.0000 80 chrII:7815500-7815580 1.0000 80 chrI:6885385-6885465 1.0000 80 chrI:10514028-10514108 1.0000 80 chrX:8236063-8236143 1.0000 80 chrI:4917668-4917748 1.0000 80 chrX:6739211-6739291 1.0000 80 chrX:1011301-1011381 1.0000 80 chrIII:131802-131882 1.0000 80 chrX:2802837-2802917 1.0000 80 chrIII:13063141-13063221 1.0000 80 chrX:8238703-8238783 1.0000 80 chrIV:1856963-1857043 1.0000 80 chrII:6849440-6849520 1.0000 80 chrX:13315232-13315312 1.0000 80 chrII:6848218-6848298 1.0000 80 chrII:5660637-5660717 1.0000 80 chrI:3754674-3754754 1.0000 80 chrI:3481527-3481607 1.0000 80 chrX:11656842-11656922 1.0000 80 chrV:5939983-5940063 1.0000 80 chrII:9601829-9601909 1.0000 80 chrIII:12058578-12058658 1.0000 80 chrIV:247718-247798 1.0000 80 chrII:7339154-7339234 1.0000 80 chrIV:10085836-10085916 1.0000 80 chrII:10149296-10149376 1.0000 80 chrIII:5920135-5920215 1.0000 80 chrII:7621607-7621687 1.0000 80 chrIV:13704246-13704326 1.0000 80 chrV:9654352-9654432 1.0000 80 chrX:5079447-5079527 1.0000 80 chrV:13608688-13608768 1.0000 80 chrIV:12716103-12716183 1.0000 80 chrV:13380334-13380414 1.0000 80 chrIII:10007116-10007196 1.0000 80 chrI:6460799-6460879 1.0000 80 chrX:13337141-13337221 1.0000 80 chrII:6835704-6835784 1.0000 80 chrIV:5946359-5946439 1.0000 80 chrIV:12605520-12605600 1.0000 80 chrIV:519561-519641 1.0000 80 chrV:7804499-7804579 1.0000 80 chrIII:13710827-13710907 1.0000 80 chrX:6735548-6735628 1.0000 80 chrX:13974878-13974958 1.0000 80 chrX:9846829-9846909 1.0000 80 chrII:6486466-6486546 1.0000 80 chrII:11748862-11748942 1.0000 80 chrI:12576375-12576455 1.0000 80 chrIII:8972080-8972160 1.0000 80 chrV:7089406-7089486 1.0000 80 chrI:10122124-10122204 1.0000 80 chrIV:7924196-7924276 1.0000 80 chrIII:9807800-9807880 1.0000 80 chrIII:13256627-13256707 1.0000 80 chrV:7759373-7759453 1.0000 80 chrV:13909572-13909652 1.0000 80 chrI:4941136-4941216 1.0000 80 chrIII:8955977-8956057 1.0000 80 chrII:15089584-15089664 1.0000 80 chrV:12518868-12518948 1.0000 80 chrV:6232093-6232173 1.0000 80 chrII:9093112-9093192 1.0000 80 chrI:323160-323240 1.0000 80 chrII:15205537-15205617 1.0000 80 chrI:6260316-6260396 1.0000 80 chrII:5346482-5346562 1.0000 80 chrX:2891430-2891510 1.0000 80 chrX:8264209-8264289 1.0000 80 chrII:14400388-14400468 1.0000 80 chrIII:13064879-13064959 1.0000 80 chrIII:13012115-13012195 1.0000 80 chrIV:5591290-5591370 1.0000 80 chrIV:884873-884953 1.0000 80 chrII:6619107-6619187 1.0000 80 chrIII:3868065-3868145 1.0000 80 chrIV:1826918-1826998 1.0000 80 chrI:10633196-10633276 1.0000 80 chrIV:15702118-15702198 1.0000 80 chrV:19666490-19666570 1.0000 80 chrIII:7784237-7784317 1.0000 80 chrIV:5764533-5764613 1.0000 80 chrX:11262447-11262527 1.0000 80 chrII:13908748-13908828 1.0000 80 chrII:11135978-11136058 1.0000 80 chrIII:12849308-12849388 1.0000 80 chrIII:4005525-4005605 1.0000 80 chrV:9545128-9545208 1.0000 80 chrV:381338-381418 1.0000 80 chrX:9549107-9549187 1.0000 80 chrV:2672766-2672846 1.0000 80 chrIII:6350011-6350091 1.0000 80 chrIII:6799616-6799696 1.0000 80 chrX:9547388-9547468 1.0000 80 chrI:9096729-9096809 1.0000 80 chrX:12178557-12178637 1.0000 80 chrII:9620886-9620966 1.0000 80 chrIV:3653519-3653599 1.0000 80 chrV:4192806-4192886 1.0000 80 chrX:2590921-2591001 1.0000 80 chrIII:4094468-4094548 1.0000 80 chrI:1155881-1155961 1.0000 80 chrII:5698444-5698524 1.0000 80 chrII:3555447-3555527 1.0000 80 chrII:11750226-11750306 1.0000 80 chrV:7884608-7884688 1.0000 80 chrII:14164360-14164440 1.0000 80 chrII:5880768-5880848 1.0000 80 chrV:18533762-18533842 1.0000 80 chrIII:3783146-3783226 1.0000 80 chrX:12413074-12413154 1.0000 80 chrIV:144785-144865 1.0000 80 chrI:13162185-13162265 1.0000 80 chrV:13790712-13790792 1.0000 80 chrII:14052070-14052150 1.0000 80 chrV:10951712-10951792 1.0000 80 chrIII:6431917-6431997 1.0000 80 chrIV:13695823-13695903 1.0000 80 chrIV:4471458-4471538 1.0000 80 chrIV:14594319-14594399 1.0000 80 chrI:7889196-7889276 1.0000 80 chrIV:8112804-8112884 1.0000 80 chrIII:2376037-2376117 1.0000 80 chrIII:6079059-6079139 1.0000 80 chrIII:10881915-10881995 1.0000 80 chrX:1503989-1504069 1.0000 80 chrX:2552241-2552321 1.0000 80 chrII:8684666-8684746 1.0000 80 chrI:8125426-8125506 1.0000 80 chrX:12210529-12210609 1.0000 80 chrIII:6360871-6360951 1.0000 80 chrII:4518421-4518501 1.0000 80 chrIII:7297222-7297302 1.0000 80 chrII:12738994-12739074 1.0000 80 chrX:4551118-4551198 1.0000 80 chrI:11913107-11913187 1.0000 80 chrII:12224659-12224739 1.0000 80 chrII:8016884-8016964 1.0000 80 chrIII:7872906-7872986 1.0000 80 chrI:7759145-7759225 1.0000 80 chrII:2204233-2204313 1.0000 80 chrI:1443696-1443776 1.0000 80 chrIII:2871941-2872021 1.0000 80 chrX:17062230-17062310 1.0000 80 chrIV:4401017-4401097 1.0000 80 chrV:904752-904832 1.0000 80 chrIV:1347130-1347210 1.0000 80 chrII:10294481-10294561 1.0000 80 chrV:10720002-10720082 1.0000 80 chrV:5269162-5269242 1.0000 80 chrV:13081367-13081447 1.0000 80 chrI:7479400-7479480 1.0000 80 chrI:2571253-2571333 1.0000 80 chrV:6462600-6462680 1.0000 80 chrI:2604320-2604400 1.0000 80 chrIII:10114836-10114916 1.0000 80 chrX:6052919-6052999 1.0000 80 chrIII:8125804-8125884 1.0000 80 chrV:728099-728179 1.0000 80 chrI:7544737-7544817 1.0000 80 chrX:7743362-7743442 1.0000 80 chrII:6838465-6838545 1.0000 80 chrIII:12555312-12555392 1.0000 80 chrIII:11825810-11825890 1.0000 80 chrIII:12369116-12369196 1.0000 80 chrIV:12843016-12843096 1.0000 80 chrIII:12617033-12617113 1.0000 80 chrV:15136932-15137012 1.0000 80 chrIII:7790675-7790755 1.0000 80 chrX:11555804-11555884 1.0000 80 chrI:853278-853358 1.0000 80 chrIII:13530173-13530253 1.0000 80 chrIII:7336327-7336407 1.0000 80 chrII:5334074-5334154 1.0000 80 chrX:10900236-10900316 1.0000 80 chrV:13259597-13259677 1.0000 80 chrIII:11110913-11110993 1.0000 80 chrV:11933352-11933432 1.0000 80 chrII:2787267-2787347 1.0000 80 chrX:2572554-2572634 1.0000 80 chrX:13320830-13320910 1.0000 80 chrI:2710680-2710760 1.0000 80 chrV:6430117-6430197 1.0000 80 chrII:13065400-13065480 1.0000 80 chrIII:10203051-10203131 1.0000 80 chrV:14848729-14848809 1.0000 80 chrV:11799382-11799462 1.0000 80 chrII:8329096-8329176 1.0000 80 chrII:8884416-8884496 1.0000 80 chrV:14423380-14423460 1.0000 80 chrV:4508208-4508288 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_vab-15/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/vab-15.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.219 G 0.208 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.219 G 0.208 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCTCCA MEME-1 width = 8 sites = 11 llr = 126 E-value = 6.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCTCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :a:a:a9: probability G a:a:::1: matrix T ::::a::: bits 2.3 **** * 2.0 **** * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCTCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:7336327-7336407 7 8.14e-06 GTAAAA GCGCTCCA CCGGCCACCG chrIII:13530173-13530253 45 8.14e-06 GTGAGCAAGC GCGCTCCA TCGCTAAGTG chrI:853278-853358 62 8.14e-06 CGCTGCAAAC GCGCTCCA CTGGACACAG chrIII:11825810-11825890 24 8.14e-06 CAGTGCAAAC GCGCTCCA CCGAACAACC chrV:5269162-5269242 51 8.14e-06 CGAGGTAAGT GCGCTCCA CCGCGAACAT chrI:6260316-6260396 65 8.14e-06 ATTTGCACGT GCGCTCCA GGGTAAGA chrIV:12605520-12605600 53 8.14e-06 GAGTGCAACT GCGCTCCA CCGGATTTTT chrIV:10085836-10085916 53 8.14e-06 TAATGTAAGT GCGCTCCA ATCACAATTG chrI:3481527-3481607 22 8.14e-06 TTACGCAATC GCGCTCCA TGGACAACTA chrV:7820417-7820497 53 8.14e-06 AGACGCAATC GCGCTCCA CCGACACCTA chrIV:884873-884953 28 1.59e-05 CAATGCAAAC GCGCTCGA ATGCAAATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7336327-7336407 8.1e-06 6_[+1]_66 chrIII:13530173-13530253 8.1e-06 44_[+1]_28 chrI:853278-853358 8.1e-06 61_[+1]_11 chrIII:11825810-11825890 8.1e-06 23_[+1]_49 chrV:5269162-5269242 8.1e-06 50_[+1]_22 chrI:6260316-6260396 8.1e-06 64_[+1]_8 chrIV:12605520-12605600 8.1e-06 52_[+1]_20 chrIV:10085836-10085916 8.1e-06 52_[+1]_20 chrI:3481527-3481607 8.1e-06 21_[+1]_51 chrV:7820417-7820497 8.1e-06 52_[+1]_20 chrIV:884873-884953 1.6e-05 27_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCTCCA width=8 seqs=11 chrIII:7336327-7336407 ( 7) GCGCTCCA 1 chrIII:13530173-13530253 ( 45) GCGCTCCA 1 chrI:853278-853358 ( 62) GCGCTCCA 1 chrIII:11825810-11825890 ( 24) GCGCTCCA 1 chrV:5269162-5269242 ( 51) GCGCTCCA 1 chrI:6260316-6260396 ( 65) GCGCTCCA 1 chrIV:12605520-12605600 ( 53) GCGCTCCA 1 chrIV:10085836-10085916 ( 53) GCGCTCCA 1 chrI:3481527-3481607 ( 22) GCGCTCCA 1 chrV:7820417-7820497 ( 53) GCGCTCCA 1 chrIV:884873-884953 ( 28) GCGCTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 6.5e-004 -1010 -1010 226 -1010 -1010 219 -1010 -1010 -1010 -1010 226 -1010 -1010 219 -1010 -1010 -1010 -1010 -1010 180 -1010 219 -1010 -1010 -1010 205 -119 -1010 181 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.5e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCTCCA MEME-1 regular expression -------------------------------------------------------------------------------- GCGCTCCA -------------------------------------------------------------------------------- Time 9.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-2 width = 8 sites = 9 llr = 103 E-value = 4.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a::a: probability G ::a:a::: matrix T :a:::a:a bits 2.3 * *** * 2.0 * *** * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11110913-11110993 58 1.07e-05 AAAAGTGACT CTGCGTCT CTCACCTCCA chrIII:13530173-13530253 68 1.07e-05 AAGTGATTGT CTGCGTCT CTAAC chrV:19666490-19666570 35 1.07e-05 CTTTTTCTGT CTGCGTCT CGCATCACAG chrIV:884873-884953 53 1.07e-05 TTAGGGTTCT CTGCGTCT CCACAGCAGG chrII:6486466-6486546 55 1.07e-05 AATTATTTAC CTGCGTCT CCACCACTCT chrIV:519561-519641 46 1.07e-05 TTGCATCCGT CTGCGTCT CGCGTTTTGC chrIV:1623913-1623993 47 1.07e-05 TCTTCTTTCT CTGCGTCT CTTCTCTCTC chrI:11779160-11779240 73 1.07e-05 AGAGAAATGT CTGCGTCT chrIV:2083306-2083386 3 1.07e-05 CG CTGCGtct ctcatctctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11110913-11110993 1.1e-05 57_[+2]_15 chrIII:13530173-13530253 1.1e-05 67_[+2]_5 chrV:19666490-19666570 1.1e-05 34_[+2]_38 chrIV:884873-884953 1.1e-05 52_[+2]_20 chrII:6486466-6486546 1.1e-05 54_[+2]_18 chrIV:519561-519641 1.1e-05 45_[+2]_27 chrIV:1623913-1623993 1.1e-05 46_[+2]_26 chrI:11779160-11779240 1.1e-05 72_[+2] chrIV:2083306-2083386 1.1e-05 2_[+2]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=9 chrIII:11110913-11110993 ( 58) CTGCGTCT 1 chrIII:13530173-13530253 ( 68) CTGCGTCT 1 chrV:19666490-19666570 ( 35) CTGCGTCT 1 chrIV:884873-884953 ( 53) CTGCGTCT 1 chrII:6486466-6486546 ( 55) CTGCGTCT 1 chrIV:519561-519641 ( 46) CTGCGTCT 1 chrIV:1623913-1623993 ( 47) CTGCGTCT 1 chrI:11779160-11779240 ( 73) CTGCGTCT 1 chrIV:2083306-2083386 ( 3) CTGCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 4.2e-001 -982 219 -982 -982 -982 -982 -982 180 -982 -982 226 -982 -982 219 -982 -982 -982 -982 226 -982 -982 -982 -982 180 -982 219 -982 -982 -982 -982 -982 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.2e-001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 14.68 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGARAR MEME-3 width = 8 sites = 22 llr = 201 E-value = 2.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGARAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a:a475 pos.-specific C :::::::: probability G :a:a:635 matrix T :::::::: bits 2.3 * * 2.0 * * 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAA consensus AGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGARAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:12617033-12617113 70 1.23e-05 GACACTTGAG AGAGAGAG AGG chrV:728099-728179 17 1.23e-05 TATCATTAGG AGAGAGAG ACAATTGATG chrII:6848218-6848298 56 1.23e-05 ggagaagaga agagagag aaagagagac chrI:2678213-2678293 67 1.23e-05 CCGAGTGAGG AGAGAGAG CACTGC chrII:10294481-10294561 66 2.93e-05 TTTTTGGAAT AGAGAGAA ACAATGA chrV:2672766-2672846 68 2.93e-05 GTTACGTGCA AGAGAGAA GAGAT chrII:9093112-9093192 17 2.93e-05 TCAATTTGTC AGAGAGAA AAATACAGAT chrI:2747854-2747934 17 2.93e-05 CGAGATGAGA AGAGAGAA TGAGAAATTA chrI:11779160-11779240 61 2.93e-05 AGGGGCAGAA AGAGAGAA ATGTCTGCGT chrI:7759145-7759225 54 5.52e-05 CTATTAAGCA AGAGAGGG AGACAATTCT chrV:7884608-7884688 26 5.52e-05 GTTTCAAAGC AGAGAGGG GAAGACAGAT chrIII:9807800-9807880 29 5.52e-05 AACTAATTGT AGAGAAAG GTCGTAAATT chrIII:10007116-10007196 1 5.52e-05 . agagaggg agaggtatag chrV:9654352-9654432 59 5.52e-05 TGTGAGAAGG AGAGAAAG ATAGAGAGAT chrIII:11110913-11110993 41 9.07e-05 GAGAGACGGC AGAGAAAA AAAGTGACTC chrI:8125426-8125506 49 9.07e-05 ATAGCATCCG AGAGAAAA TGCATTCGGG chrIII:6799616-6799696 60 9.07e-05 GTCAGTGGTC AGAGAAAA GTCACTGACC chrII:6619107-6619187 59 9.07e-05 GGTCTTGTCG AGAGAGGA TGGATACCGA chrX:2891430-2891510 8 9.07e-05 AGAAGAT AGAGAAAA AGGCAAATGG chrV:2076200-2076280 21 9.07e-05 CGGAAGCTCA AGAGAAAA CATGAGAGAT chrI:7889196-7889276 16 1.03e-04 CAAAAAGCGG AGAGAAGG TGACAAAAAG chrX:2590921-2591001 14 1.20e-04 GGGGAGAAAT AGAGAAGA ATGAAGGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGARAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:12617033-12617113 1.2e-05 69_[+3]_3 chrV:728099-728179 1.2e-05 16_[+3]_56 chrII:6848218-6848298 1.2e-05 55_[+3]_17 chrI:2678213-2678293 1.2e-05 66_[+3]_6 chrII:10294481-10294561 2.9e-05 65_[+3]_7 chrV:2672766-2672846 2.9e-05 67_[+3]_5 chrII:9093112-9093192 2.9e-05 16_[+3]_56 chrI:2747854-2747934 2.9e-05 16_[+3]_56 chrI:11779160-11779240 2.9e-05 60_[+3]_12 chrI:7759145-7759225 5.5e-05 53_[+3]_19 chrV:7884608-7884688 5.5e-05 25_[+3]_47 chrIII:9807800-9807880 5.5e-05 28_[+3]_44 chrIII:10007116-10007196 5.5e-05 [+3]_72 chrV:9654352-9654432 5.5e-05 58_[+3]_14 chrIII:11110913-11110993 9.1e-05 40_[+3]_32 chrI:8125426-8125506 9.1e-05 48_[+3]_24 chrIII:6799616-6799696 9.1e-05 59_[+3]_13 chrII:6619107-6619187 9.1e-05 58_[+3]_14 chrX:2891430-2891510 9.1e-05 7_[+3]_65 chrV:2076200-2076280 9.1e-05 20_[+3]_52 chrI:7889196-7889276 0.0001 15_[+3]_57 chrX:2590921-2591001 0.00012 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGARAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGARAR width=8 seqs=22 chrIII:12617033-12617113 ( 70) AGAGAGAG 1 chrV:728099-728179 ( 17) AGAGAGAG 1 chrII:6848218-6848298 ( 56) AGAGAGAG 1 chrI:2678213-2678293 ( 67) AGAGAGAG 1 chrII:10294481-10294561 ( 66) AGAGAGAA 1 chrV:2672766-2672846 ( 68) AGAGAGAA 1 chrII:9093112-9093192 ( 17) AGAGAGAA 1 chrI:2747854-2747934 ( 17) AGAGAGAA 1 chrI:11779160-11779240 ( 61) AGAGAGAA 1 chrI:7759145-7759225 ( 54) AGAGAGGG 1 chrV:7884608-7884688 ( 26) AGAGAGGG 1 chrIII:9807800-9807880 ( 29) AGAGAAAG 1 chrIII:10007116-10007196 ( 1) AGAGAGGG 1 chrV:9654352-9654432 ( 59) AGAGAAAG 1 chrIII:11110913-11110993 ( 41) AGAGAAAA 1 chrI:8125426-8125506 ( 49) AGAGAAAA 1 chrIII:6799616-6799696 ( 60) AGAGAAAA 1 chrII:6619107-6619187 ( 59) AGAGAGGA 1 chrX:2891430-2891510 ( 8) AGAGAAAA 1 chrV:2076200-2076280 ( 21) AGAGAAAA 1 chrI:7889196-7889276 ( 16) AGAGAAGG 1 chrX:2590921-2591001 ( 14) AGAGAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGARAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 2.3e+000 181 -1110 -1110 -1110 -1110 -1110 226 -1110 181 -1110 -1110 -1110 -1110 -1110 226 -1110 181 -1110 -1110 -1110 52 -1110 150 -1110 135 -1110 39 -1110 93 -1110 113 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGARAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 2.3e+000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.409091 0.000000 0.590909 0.000000 0.727273 0.000000 0.272727 0.000000 0.545455 0.000000 0.454545 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGARAR MEME-3 regular expression -------------------------------------------------------------------------------- AGAGA[GA][AG][AG] -------------------------------------------------------------------------------- Time 18.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYYYYTC MEME-4 width = 8 sites = 77 llr = 523 E-value = 6.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYYYYTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 224546:a probability G ::2::::: matrix T 884564a: bits 2.3 * 2.0 * 1.8 ** 1.6 ** Relative 1.4 ** Entropy 1.1 ** *** (9.8 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTCTC consensus C CCCT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYYYYTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:12843016-12843096 23 2.75e-05 ctttcctcct ttcctctc tatttctctc chrV:6462600-6462680 52 2.75e-05 TTGCACTGTC TTCCTCTC AACCCTTCTA chrII:8016884-8016964 39 2.75e-05 TCGAATTATT TTCCTCTC GTCTTCTCGG chrIII:6360871-6360951 68 2.75e-05 TTTCGATCCA TTCCTCTC ATTCA chrIII:6079059-6079139 9 2.75e-05 TTTCTCTA TTCCTCTC TAACTCTCGT chrI:9333202-9333282 5 2.75e-05 GTGA TTCCTCTC AACATTTCAA chrX:12178557-12178637 43 6.36e-05 TTCGTTTCGT TTTCCCTC CCCGGATGAT chrIV:15702118-15702198 63 6.36e-05 TCCCGCCCAC TTTCTCTC GAACTGGTGA chrII:7339154-7339234 24 6.36e-05 TTTATTGCCT TTTCTCTC ATTAATTACT chrIII:12617033-12617113 20 9.96e-05 ACACACCTTG TTCTCCTC CACTCTTATT chrI:1155881-1155961 60 9.96e-05 TTGCTGTTGC TTCTCCTC TGGATAATGT chrI:4941136-4941216 53 9.96e-05 TATACATTGG TTCTTCTC TCGATCTATC chrV:7804499-7804579 41 9.96e-05 GTTTCTCAAT TTCTTCTC CTGTCTTCAT chrX:8236063-8236143 17 9.96e-05 AGATGGGCCA TTCTCCTC ACATCTCATA chrII:1090889-1090969 23 9.96e-05 GAATTAACAC TTCTCCTC TACTCTTCCC chrII:13681250-13681330 12 9.96e-05 CCATAAATCT TTCTCCTC CTCTGTTCTC chrV:14800533-14800613 14 9.96e-05 CTCCAGTATT TTCTCCTC GTGTGTGTGC chrX:12210529-12210609 54 1.47e-04 TAATTATGTC TTTTTCTC GTGTCATCGC chrX:9547388-9547468 41 1.47e-04 TACCTGATGA TTTTTCTC TGCGAATTGA chrIII:131802-131882 29 1.47e-04 GTTGCACACT TTTTCCTC ATATTAAATT chrV:1383677-1383757 32 1.47e-04 AAATCCGTTT TTTTTCTC CAATTATTAA chrI:9083063-9083143 73 1.47e-04 TTTTTGTCCA TTTTCCTC chrI:9096729-9096809 16 1.83e-04 AAGTGGAGAA TTCCTTTC GTTGAGGAAT chrX:10900236-10900316 40 2.56e-04 ATTGCGGACT TTGCCCTC TCCTTTGCAC chrV:10720002-10720082 55 2.56e-04 TCTTGTGTCA TTGCCCTC CCAGTTCTAC chrII:5880768-5880848 38 2.56e-04 AATTTCTTAA TTGCCCTC TCCTATCCAT chrX:11262447-11262527 25 2.56e-04 CATCCCACAA TTTCTTTC CAACTGAATG chrII:11748862-11748942 70 2.56e-04 AGGGAACATA TTGCTCTC CGT chrII:6486466-6486546 9 2.56e-04 TTTGTACT TTGCTCTC AATGGGACCA chrIV:247718-247798 38 2.56e-04 TTTCTCTATG TTTCTTTC GAATTTGTGT chrX:15706272-15706352 56 2.56e-04 TCTTCTTGAT TTTCCTTC TACCACCACA chrI:11779160-11779240 13 2.56e-04 tctctctctc tttccttc tttcAATGAT chrII:2204233-2204313 50 3.04e-04 CACCGCACAC TTCTTTTC GGCGCGAGGT chrIII:10881915-10881995 62 3.04e-04 CGAATAGTGA TTCTTTTC AAGTTAGCCG chrIII:10114836-10114916 67 4.00e-04 ttatttagtt tttttttc ttgaat chrI:11913107-11913187 50 4.00e-04 TCAATCCGAT TTTTCTTC ATCTCCTCTT chrX:2891430-2891510 57 4.00e-04 CAAACGACGA TTTTCTTC TACTTcacac chrII:15089584-15089664 72 4.00e-04 TGATTAAATG TTTTTTTC C chrI:6460799-6460879 22 4.00e-04 CTATTACCAT TTTTTTTC TAACTAATTC chrII:7323538-7323618 47 4.00e-04 TACCTAGTTG TTTTCTTC TTTCAATACA chrV:10557221-10557301 5 4.00e-04 TTTA TTTTCTTC ATTCCGACTA chrIV:1347130-1347210 57 4.55e-04 GCTCGGTGTA CTCCTCTC GGATAATATT chrV:904752-904832 51 4.55e-04 AGGCGGTGTA CTCCTCTC GGACACCTGC chrII:3555447-3555527 54 4.55e-04 ATTACGTCGT CTCCTCTC ATTTTCCAAA chrIII:13064879-13064959 26 4.55e-04 TTCCAATTTT CTCCCCTC TCTCTACACC chrIV:7924196-7924276 61 4.55e-04 TCCACCCGGC TTGCCTTC CAACTGCACG chrIV:2083306-2083386 31 4.55e-04 cctccctctc ctcctctc ACAGTTTCAT chrIII:7784237-7784317 42 4.83e-04 ACATTAAGCC CTTCTCTC TCTCTTCCAG chrIV:1623913-1623993 55 4.83e-04 CTCTGCGTCT CTTCTCTC TCACACACAT chrIII:13012115-13012195 19 5.76e-04 CCACACCATC TTGTCTTC TTCACCGAAT chrIV:12716103-12716183 42 5.76e-04 ATAAGAGAAA TTGTCTTC TGAATATCTG chrV:5939983-5940063 9 5.76e-04 AGCAATCA TTGTTTTC ACATTTTATT chrIII:10290692-10290772 51 5.76e-04 TTTTTAATTT TTGTTTTC TTGAAATCGG chrI:13395133-13395213 20 5.76e-04 TTAATGTTTC TTGTTTTC TTGAAATCCT chrII:12053604-12053684 12 5.76e-04 GCAAGTCCAA TCCCCCTC TCCATCATCA chrV:15136932-15137012 11 6.39e-04 TCGTCTCGAA TCTCTCTC GCGTAGCAAC chrIII:7872906-7872986 5 6.39e-04 GAAT CTTTCCTC GCAACCATCA chrV:10951712-10951792 71 7.87e-04 TGTGACTTAT CTTCTTTC TT chrII:15205537-15205617 55 7.87e-04 CTCCAACGAA CTTCCTTC TTTATCATTT chrIV:13704246-13704326 22 7.87e-04 ATGTGTTGAA TCTTTCTC AATACATACA chrIV:9737295-9737375 67 7.87e-04 CTATCACTCT CTTCTTTC CAATGT chrIII:7336327-7336407 65 8.50e-04 AGACCCGCCA CTCTTTTC ATTCGTTT chrIV:5764533-5764613 17 8.50e-04 AAATAGAACC CTCTCTTC GCGTGGTATA chrIV:14594319-14594399 71 9.80e-04 ACGAGGTAAA CTTTTTTC TT chrV:7759373-7759453 47 9.80e-04 ATTCTCCATT CTTTTTTC ACTCTCTATC chrIV:9790857-9790937 5 9.80e-04 CTTA TCGCCCTC CGTGTCCGTG chrX:9546770-9546850 55 9.80e-04 CACTTTAACC CTGTCCTC GACGCCTAGC chrX:498816-498896 69 1.02e-03 AACTAATCGA TCCTCTTC ACCT chrIII:6350011-6350091 19 1.12e-03 GAAATCGACT TCTTCTTC AACAACAACG chrV:19666490-19666570 24 1.12e-03 CACTGGGTGG TCTTTTTC TGTCTGCGTC chrV:12518868-12518948 31 1.12e-03 TTTGTCGTTT TCTTTTTC ATTGTCTCGC chrIII:8972080-8972160 13 1.12e-03 GCAGGTATTC TCGTTCTC AATATTGATG chrI:3100900-3100980 70 1.12e-03 ACGACCAAGG TCTTTTTC CCT chrIII:3783146-3783226 54 1.19e-03 TTGTCCCCCC CCCCTCTC CTGCTGATGA chrII:14164360-14164440 30 1.19e-03 TCGATGAAAC TCGCCTTC TCGCCACCCT chrIV:13682887-13682967 60 1.19e-03 CAAAAGACCT CCCCCCTC CCATCTCTCA chrI:2571253-2571333 57 1.27e-03 ATCTGGCGAA TCGTTTTC CGTGAAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYYYYTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:12843016-12843096 2.8e-05 22_[+4]_50 chrV:6462600-6462680 2.8e-05 51_[+4]_21 chrII:8016884-8016964 2.8e-05 38_[+4]_34 chrIII:6360871-6360951 2.8e-05 67_[+4]_5 chrIII:6079059-6079139 2.8e-05 8_[+4]_64 chrI:9333202-9333282 2.8e-05 4_[+4]_68 chrX:12178557-12178637 6.4e-05 42_[+4]_30 chrIV:15702118-15702198 6.4e-05 62_[+4]_10 chrII:7339154-7339234 6.4e-05 23_[+4]_49 chrIII:12617033-12617113 0.0001 19_[+4]_53 chrI:1155881-1155961 0.0001 59_[+4]_13 chrI:4941136-4941216 0.0001 52_[+4]_20 chrV:7804499-7804579 0.0001 40_[+4]_32 chrX:8236063-8236143 0.0001 16_[+4]_56 chrII:1090889-1090969 0.0001 22_[+4]_50 chrII:13681250-13681330 0.0001 11_[+4]_61 chrV:14800533-14800613 0.0001 13_[+4]_59 chrX:12210529-12210609 0.00015 53_[+4]_19 chrX:9547388-9547468 0.00015 40_[+4]_32 chrIII:131802-131882 0.00015 28_[+4]_44 chrV:1383677-1383757 0.00015 31_[+4]_41 chrI:9083063-9083143 0.00015 72_[+4] chrI:9096729-9096809 0.00018 15_[+4]_57 chrX:10900236-10900316 0.00026 39_[+4]_33 chrV:10720002-10720082 0.00026 54_[+4]_18 chrII:5880768-5880848 0.00026 37_[+4]_35 chrX:11262447-11262527 0.00026 24_[+4]_48 chrII:11748862-11748942 0.00026 69_[+4]_3 chrII:6486466-6486546 0.00026 8_[+4]_64 chrIV:247718-247798 0.00026 37_[+4]_35 chrX:15706272-15706352 0.00026 55_[+4]_17 chrI:11779160-11779240 0.00026 12_[+4]_60 chrII:2204233-2204313 0.0003 49_[+4]_23 chrIII:10881915-10881995 0.0003 61_[+4]_11 chrIII:10114836-10114916 0.0004 66_[+4]_6 chrI:11913107-11913187 0.0004 49_[+4]_23 chrX:2891430-2891510 0.0004 56_[+4]_16 chrII:15089584-15089664 0.0004 71_[+4]_1 chrI:6460799-6460879 0.0004 21_[+4]_51 chrII:7323538-7323618 0.0004 46_[+4]_26 chrV:10557221-10557301 0.0004 4_[+4]_68 chrIV:1347130-1347210 0.00046 56_[+4]_16 chrV:904752-904832 0.00046 50_[+4]_22 chrII:3555447-3555527 0.00046 53_[+4]_19 chrIII:13064879-13064959 0.00046 25_[+4]_47 chrIV:7924196-7924276 0.00046 60_[+4]_12 chrIV:2083306-2083386 0.00046 30_[+4]_42 chrIII:7784237-7784317 0.00048 41_[+4]_31 chrIV:1623913-1623993 0.00048 54_[+4]_18 chrIII:13012115-13012195 0.00058 18_[+4]_54 chrIV:12716103-12716183 0.00058 41_[+4]_31 chrV:5939983-5940063 0.00058 8_[+4]_64 chrIII:10290692-10290772 0.00058 50_[+4]_22 chrI:13395133-13395213 0.00058 19_[+4]_53 chrII:12053604-12053684 0.00058 11_[+4]_61 chrV:15136932-15137012 0.00064 10_[+4]_62 chrIII:7872906-7872986 0.00064 4_[+4]_68 chrV:10951712-10951792 0.00079 70_[+4]_2 chrII:15205537-15205617 0.00079 54_[+4]_18 chrIV:13704246-13704326 0.00079 21_[+4]_51 chrIV:9737295-9737375 0.00079 66_[+4]_6 chrIII:7336327-7336407 0.00085 64_[+4]_8 chrIV:5764533-5764613 0.00085 16_[+4]_56 chrIV:14594319-14594399 0.00098 70_[+4]_2 chrV:7759373-7759453 0.00098 46_[+4]_26 chrIV:9790857-9790937 0.00098 4_[+4]_68 chrX:9546770-9546850 0.00098 54_[+4]_18 chrX:498816-498896 0.001 68_[+4]_4 chrIII:6350011-6350091 0.0011 18_[+4]_54 chrV:19666490-19666570 0.0011 23_[+4]_49 chrV:12518868-12518948 0.0011 30_[+4]_42 chrIII:8972080-8972160 0.0011 12_[+4]_60 chrI:3100900-3100980 0.0011 69_[+4]_3 chrIII:3783146-3783226 0.0012 53_[+4]_19 chrII:14164360-14164440 0.0012 29_[+4]_43 chrIV:13682887-13682967 0.0012 59_[+4]_13 chrI:2571253-2571333 0.0013 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYYYYTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYYYYTC width=8 seqs=77 chrIV:12843016-12843096 ( 23) TTCCTCTC 1 chrV:6462600-6462680 ( 52) TTCCTCTC 1 chrII:8016884-8016964 ( 39) TTCCTCTC 1 chrIII:6360871-6360951 ( 68) TTCCTCTC 1 chrIII:6079059-6079139 ( 9) TTCCTCTC 1 chrI:9333202-9333282 ( 5) TTCCTCTC 1 chrX:12178557-12178637 ( 43) TTTCCCTC 1 chrIV:15702118-15702198 ( 63) TTTCTCTC 1 chrII:7339154-7339234 ( 24) TTTCTCTC 1 chrIII:12617033-12617113 ( 20) TTCTCCTC 1 chrI:1155881-1155961 ( 60) TTCTCCTC 1 chrI:4941136-4941216 ( 53) TTCTTCTC 1 chrV:7804499-7804579 ( 41) TTCTTCTC 1 chrX:8236063-8236143 ( 17) TTCTCCTC 1 chrII:1090889-1090969 ( 23) TTCTCCTC 1 chrII:13681250-13681330 ( 12) TTCTCCTC 1 chrV:14800533-14800613 ( 14) TTCTCCTC 1 chrX:12210529-12210609 ( 54) TTTTTCTC 1 chrX:9547388-9547468 ( 41) TTTTTCTC 1 chrIII:131802-131882 ( 29) TTTTCCTC 1 chrV:1383677-1383757 ( 32) TTTTTCTC 1 chrI:9083063-9083143 ( 73) TTTTCCTC 1 chrI:9096729-9096809 ( 16) TTCCTTTC 1 chrX:10900236-10900316 ( 40) TTGCCCTC 1 chrV:10720002-10720082 ( 55) TTGCCCTC 1 chrII:5880768-5880848 ( 38) TTGCCCTC 1 chrX:11262447-11262527 ( 25) TTTCTTTC 1 chrII:11748862-11748942 ( 70) TTGCTCTC 1 chrII:6486466-6486546 ( 9) TTGCTCTC 1 chrIV:247718-247798 ( 38) TTTCTTTC 1 chrX:15706272-15706352 ( 56) TTTCCTTC 1 chrI:11779160-11779240 ( 13) TTTCCTTC 1 chrII:2204233-2204313 ( 50) TTCTTTTC 1 chrIII:10881915-10881995 ( 62) TTCTTTTC 1 chrIII:10114836-10114916 ( 67) TTTTTTTC 1 chrI:11913107-11913187 ( 50) TTTTCTTC 1 chrX:2891430-2891510 ( 57) TTTTCTTC 1 chrII:15089584-15089664 ( 72) TTTTTTTC 1 chrI:6460799-6460879 ( 22) TTTTTTTC 1 chrII:7323538-7323618 ( 47) TTTTCTTC 1 chrV:10557221-10557301 ( 5) TTTTCTTC 1 chrIV:1347130-1347210 ( 57) CTCCTCTC 1 chrV:904752-904832 ( 51) CTCCTCTC 1 chrII:3555447-3555527 ( 54) CTCCTCTC 1 chrIII:13064879-13064959 ( 26) CTCCCCTC 1 chrIV:7924196-7924276 ( 61) TTGCCTTC 1 chrIV:2083306-2083386 ( 31) CTCCTCTC 1 chrIII:7784237-7784317 ( 42) CTTCTCTC 1 chrIV:1623913-1623993 ( 55) CTTCTCTC 1 chrIII:13012115-13012195 ( 19) TTGTCTTC 1 chrIV:12716103-12716183 ( 42) TTGTCTTC 1 chrV:5939983-5940063 ( 9) TTGTTTTC 1 chrIII:10290692-10290772 ( 51) TTGTTTTC 1 chrI:13395133-13395213 ( 20) TTGTTTTC 1 chrII:12053604-12053684 ( 12) TCCCCCTC 1 chrV:15136932-15137012 ( 11) TCTCTCTC 1 chrIII:7872906-7872986 ( 5) CTTTCCTC 1 chrV:10951712-10951792 ( 71) CTTCTTTC 1 chrII:15205537-15205617 ( 55) CTTCCTTC 1 chrIV:13704246-13704326 ( 22) TCTTTCTC 1 chrIV:9737295-9737375 ( 67) CTTCTTTC 1 chrIII:7336327-7336407 ( 65) CTCTTTTC 1 chrIV:5764533-5764613 ( 17) CTCTCTTC 1 chrIV:14594319-14594399 ( 71) CTTTTTTC 1 chrV:7759373-7759453 ( 47) CTTTTTTC 1 chrIV:9790857-9790937 ( 5) TCGCCCTC 1 chrX:9546770-9546850 ( 55) CTGTCCTC 1 chrX:498816-498896 ( 69) TCCTCTTC 1 chrIII:6350011-6350091 ( 19) TCTTCTTC 1 chrV:19666490-19666570 ( 24) TCTTTTTC 1 chrV:12518868-12518948 ( 31) TCTTTTTC 1 chrIII:8972080-8972160 ( 13) TCGTTCTC 1 chrI:3100900-3100980 ( 70) TCTTTTTC 1 chrIII:3783146-3783226 ( 54) CCCCTCTC 1 chrII:14164360-14164440 ( 30) TCGCCTTC 1 chrIV:13682887-13682967 ( 60) CCCCCCTC 1 chrI:2571253-2571333 ( 57) TCGTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYYYYTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.33575 E= 6.8e+003 -1291 9 -1291 142 -1291 -27 -1291 151 -1291 73 0 58 -1291 109 -1291 89 -1291 92 -1291 102 -1291 135 -1291 62 -1291 -1291 -1291 180 -1291 219 -1291 -1291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYYYYTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 6.8e+003 0.000000 0.233766 0.000000 0.766234 0.000000 0.181818 0.000000 0.818182 0.000000 0.363636 0.207792 0.428571 0.000000 0.467532 0.000000 0.532468 0.000000 0.415584 0.000000 0.584416 0.000000 0.558442 0.000000 0.441558 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYYYYTC MEME-4 regular expression -------------------------------------------------------------------------------- [TC]T[TCG][TC][TC][CT]TC -------------------------------------------------------------------------------- Time 22.11 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGCGCG MEME-5 width = 8 sites = 6 llr = 66 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGCGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:8:2::: pos.-specific C ::::8:a: probability G :a2a:a:a matrix T :::::::: bits 2.3 * * *** 2.0 * * *** 1.8 ** * *** 1.6 ** ***** Relative 1.4 ** ***** Entropy 1.1 ******** (15.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGCGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGCGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6838465-6838545 23 7.29e-06 TGTGACGAAG AGAGCGCG GACGGGGTGG chrV:904752-904832 23 7.29e-06 AATTCTCAAT AGAGCGCG CTTGCCGAAG chrX:11262447-11262527 60 7.29e-06 GGAGTGCGTT AGAGCGCG GTTGCAAAGA chrX:11656842-11656922 18 7.29e-06 AATTAGCCAC AGAGCGCG TTTGCACTTC chrIV:519561-519641 27 1.26e-05 AATTAGCAGT AGGGCGCG CTTGCATCCG chrI:10633196-10633276 72 2.21e-05 GTGACAAGAA AGAGAGCG A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGCGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6838465-6838545 7.3e-06 22_[+5]_50 chrV:904752-904832 7.3e-06 22_[+5]_50 chrX:11262447-11262527 7.3e-06 59_[+5]_13 chrX:11656842-11656922 7.3e-06 17_[+5]_55 chrIV:519561-519641 1.3e-05 26_[+5]_46 chrI:10633196-10633276 2.2e-05 71_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGCGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGCGCG width=8 seqs=6 chrII:6838465-6838545 ( 23) AGAGCGCG 1 chrV:904752-904832 ( 23) AGAGCGCG 1 chrX:11262447-11262527 ( 60) AGAGCGCG 1 chrX:11656842-11656922 ( 18) AGAGCGCG 1 chrIV:519561-519641 ( 27) AGGGCGCG 1 chrI:10633196-10633276 ( 72) AGAGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGCGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 1.5e+004 181 -923 -923 -923 -923 -923 226 -923 154 -923 -32 -923 -923 -923 226 -923 -77 193 -923 -923 -923 -923 226 -923 -923 219 -923 -923 -923 -923 226 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGCGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.5e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGCGCG MEME-5 regular expression -------------------------------------------------------------------------------- AGAGCGCG -------------------------------------------------------------------------------- Time 25.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6047512-6047592 3.39e-01 80 chrX:9846080-9846160 3.51e-01 80 chrI:1588207-1588287 8.05e-01 80 chrX:9848379-9848459 4.58e-01 80 chrI:283437-283517 7.72e-01 80 chrIII:10526110-10526190 9.49e-01 80 chrI:9333202-9333282 5.06e-02 4_[+4(2.75e-05)]_68 chrV:12300920-12301000 9.64e-01 80 chrV:14800533-14800613 2.87e-02 13_[+4(9.96e-05)]_59 chrX:9848586-9848666 9.81e-01 80 chrIV:3826882-3826962 7.77e-01 80 chrX:11014591-11014671 9.19e-01 80 chrV:2076200-2076280 1.78e-01 20_[+3(9.07e-05)]_52 chrIV:13682887-13682967 4.64e-01 80 chrI:4328981-4329061 4.88e-01 80 chrII:10147643-10147723 4.78e-01 80 chrIV:2083306-2083386 9.16e-03 2_[+2(1.07e-05)]_70 chrII:7679775-7679855 2.06e-02 80 chrX:7932603-7932683 7.88e-01 80 chrI:7867089-7867169 2.00e-01 80 chrV:10557221-10557301 1.67e-01 80 chrX:9546770-9546850 8.56e-02 80 chrIII:6988221-6988301 6.35e-01 80 chrII:13681250-13681330 4.44e-02 11_[+4(9.96e-05)]_61 chrII:12053604-12053684 2.55e-02 80 chrIV:9737295-9737375 6.07e-01 80 chrV:17728887-17728967 4.33e-01 80 chrI:11779160-11779240 5.83e-05 60_[+3(2.93e-05)]_4_[+2(1.07e-05)] chrII:6878071-6878151 8.83e-01 80 chrIV:9790857-9790937 2.06e-01 80 chrIV:1623913-1623993 1.72e-02 46_[+2(1.07e-05)]_26 chrX:15706272-15706352 2.33e-01 80 chrV:4694879-4694959 5.21e-01 80 chrI:1069507-1069587 2.23e-01 80 chrIV:14764103-14764183 2.58e-01 80 chrIII:7375699-7375779 5.13e-01 80 chrI:9083063-9083143 5.18e-01 80 chrX:13113565-13113645 8.65e-01 80 chrI:13395133-13395213 4.91e-01 80 chrV:19521820-19521900 6.00e-01 80 chrV:12512100-12512180 9.24e-01 80 chrI:2747854-2747934 1.00e-02 16_[+3(2.93e-05)]_56 chrII:7090134-7090214 9.91e-01 80 chrI:2678213-2678293 3.70e-03 66_[+3(1.23e-05)]_6 chrI:130540-130620 1.69e-01 80 chrX:2582344-2582424 1.61e-01 80 chrII:14400181-14400261 9.83e-01 80 chrIII:10290692-10290772 6.98e-01 80 chrX:16998180-16998260 6.87e-01 80 chrIV:6099920-6100000 9.23e-01 80 chrII:11440317-11440397 7.19e-01 80 chrX:498816-498896 6.69e-01 80 chrII:7323538-7323618 4.10e-01 80 chrII:1090889-1090969 1.25e-01 22_[+4(9.96e-05)]_50 chrI:3100900-3100980 6.35e-01 80 chrV:7820417-7820497 4.58e-02 52_[+1(8.14e-06)]_20 chrV:1383677-1383757 9.99e-02 80 chrX:3902229-3902309 7.63e-01 80 chrIV:4180022-4180102 3.93e-01 80 chrII:7815500-7815580 9.87e-01 80 chrI:6885385-6885465 6.75e-01 80 chrI:10514028-10514108 5.07e-01 80 chrX:8236063-8236143 4.04e-02 16_[+4(9.96e-05)]_56 chrI:4917668-4917748 5.60e-01 80 chrX:6739211-6739291 9.96e-01 80 chrX:1011301-1011381 6.83e-01 80 chrIII:131802-131882 3.15e-04 63_[+2(9.07e-05)]_9 chrX:2802837-2802917 7.17e-01 80 chrIII:13063141-13063221 9.33e-02 80 chrX:8238703-8238783 7.94e-01 80 chrIV:1856963-1857043 8.17e-01 80 chrII:6849440-6849520 5.39e-01 80 chrX:13315232-13315312 6.82e-01 80 chrII:6848218-6848298 1.61e-02 55_[+3(1.23e-05)]_17 chrII:5660637-5660717 6.31e-01 80 chrI:3754674-3754754 6.70e-01 80 chrI:3481527-3481607 1.87e-02 21_[+1(8.14e-06)]_51 chrX:11656842-11656922 4.42e-03 17_[+5(7.29e-06)]_55 chrV:5939983-5940063 5.66e-01 80 chrII:9601829-9601909 5.92e-01 80 chrIII:12058578-12058658 2.49e-01 80 chrIV:247718-247798 4.22e-01 80 chrII:7339154-7339234 1.52e-01 23_[+4(6.36e-05)]_49 chrIV:10085836-10085916 1.60e-04 31_[+2(9.07e-05)]_13_[+1(8.14e-06)]_\ 20 chrII:10149296-10149376 3.82e-01 80 chrIII:5920135-5920215 8.41e-01 80 chrII:7621607-7621687 8.38e-01 80 chrIV:13704246-13704326 5.61e-01 80 chrV:9654352-9654432 1.96e-01 58_[+3(5.52e-05)]_14 chrX:5079447-5079527 1.73e-01 80 chrV:13608688-13608768 5.96e-01 80 chrIV:12716103-12716183 2.08e-02 80 chrV:13380334-13380414 9.91e-01 80 chrIII:10007116-10007196 4.27e-02 [+3(5.52e-05)]_72 chrI:6460799-6460879 6.65e-01 80 chrX:13337141-13337221 1.22e-01 80 chrII:6835704-6835784 8.41e-01 80 chrIV:5946359-5946439 6.44e-01 80 chrIV:12605520-12605600 3.79e-03 52_[+1(8.14e-06)]_20 chrIV:519561-519641 2.69e-04 26_[+5(1.26e-05)]_11_[+2(1.07e-05)]_\ 27 chrV:7804499-7804579 3.87e-01 40_[+4(9.96e-05)]_32 chrIII:13710827-13710907 9.00e-01 80 chrX:6735548-6735628 3.40e-01 80 chrX:13974878-13974958 9.54e-01 80 chrX:9846829-9846909 7.01e-01 80 chrII:6486466-6486546 3.28e-03 54_[+2(1.07e-05)]_18 chrII:11748862-11748942 7.08e-02 80 chrI:12576375-12576455 9.54e-01 80 chrIII:8972080-8972160 6.84e-01 80 chrV:7089406-7089486 5.54e-01 80 chrI:10122124-10122204 5.67e-01 80 chrIV:7924196-7924276 1.61e-01 80 chrIII:9807800-9807880 1.73e-01 28_[+3(5.52e-05)]_44 chrIII:13256627-13256707 8.28e-01 80 chrV:7759373-7759453 7.87e-01 80 chrV:13909572-13909652 7.96e-01 80 chrI:4941136-4941216 9.40e-02 52_[+4(9.96e-05)]_20 chrIII:8955977-8956057 7.94e-01 80 chrII:15089584-15089664 2.22e-01 80 chrV:12518868-12518948 6.14e-02 80 chrV:6232093-6232173 6.15e-01 80 chrII:9093112-9093192 5.02e-02 16_[+3(2.93e-05)]_56 chrI:323160-323240 5.90e-01 80 chrII:15205537-15205617 6.81e-01 80 chrI:6260316-6260396 5.14e-02 64_[+1(8.14e-06)]_8 chrII:5346482-5346562 7.92e-01 80 chrX:2891430-2891510 2.86e-02 7_[+3(9.07e-05)]_65 chrX:8264209-8264289 9.62e-01 80 chrII:14400388-14400468 7.38e-01 80 chrIII:13064879-13064959 5.73e-01 80 chrIII:13012115-13012195 2.02e-01 80 chrIV:5591290-5591370 6.16e-01 80 chrIV:884873-884953 3.89e-04 27_[+1(1.59e-05)]_17_[+2(1.07e-05)]_\ 20 chrII:6619107-6619187 6.07e-02 58_[+3(9.07e-05)]_14 chrIII:3868065-3868145 8.53e-01 80 chrIV:1826918-1826998 2.80e-01 80 chrI:10633196-10633276 4.76e-04 71_[+5(2.21e-05)]_1 chrIV:15702118-15702198 1.87e-01 62_[+4(6.36e-05)]_10 chrV:19666490-19666570 6.01e-03 34_[+2(1.07e-05)]_38 chrIII:7784237-7784317 5.85e-01 80 chrIV:5764533-5764613 5.11e-01 80 chrX:11262447-11262527 7.28e-04 59_[+5(7.29e-06)]_13 chrII:13908748-13908828 2.34e-01 80 chrII:11135978-11136058 3.71e-01 80 chrIII:12849308-12849388 4.49e-01 80 chrIII:4005525-4005605 8.15e-01 80 chrV:9545128-9545208 3.45e-01 80 chrV:381338-381418 9.52e-01 80 chrX:9549107-9549187 9.30e-01 80 chrV:2672766-2672846 1.30e-02 67_[+3(2.93e-05)]_5 chrIII:6350011-6350091 4.53e-01 80 chrIII:6799616-6799696 4.03e-01 59_[+3(9.07e-05)]_13 chrX:9547388-9547468 1.66e-01 80 chrI:9096729-9096809 3.73e-01 80 chrX:12178557-12178637 2.55e-01 42_[+4(6.36e-05)]_30 chrII:9620886-9620966 7.05e-01 80 chrIV:3653519-3653599 8.90e-02 80 chrV:4192806-4192886 8.05e-01 80 chrX:2590921-2591001 3.55e-01 80 chrIII:4094468-4094548 7.76e-01 80 chrI:1155881-1155961 1.22e-01 59_[+4(9.96e-05)]_13 chrII:5698444-5698524 7.21e-01 80 chrII:3555447-3555527 3.66e-01 80 chrII:11750226-11750306 8.34e-01 80 chrV:7884608-7884688 5.44e-03 25_[+3(5.52e-05)]_47 chrII:14164360-14164440 4.45e-01 80 chrII:5880768-5880848 2.02e-01 80 chrV:18533762-18533842 2.68e-02 80 chrIII:3783146-3783226 4.58e-01 80 chrX:12413074-12413154 4.52e-01 80 chrIV:144785-144865 7.77e-01 80 chrI:13162185-13162265 8.83e-01 80 chrV:13790712-13790792 3.35e-01 80 chrII:14052070-14052150 5.27e-01 80 chrV:10951712-10951792 6.70e-01 80 chrIII:6431917-6431997 5.97e-01 80 chrIV:13695823-13695903 6.02e-01 80 chrIV:4471458-4471538 7.96e-01 80 chrIV:14594319-14594399 8.23e-01 80 chrI:7889196-7889276 2.27e-01 80 chrIV:8112804-8112884 8.16e-01 80 chrIII:2376037-2376117 4.24e-01 80 chrIII:6079059-6079139 1.40e-01 8_[+4(2.75e-05)]_64 chrIII:10881915-10881995 1.80e-01 80 chrX:1503989-1504069 5.80e-01 80 chrX:2552241-2552321 9.10e-01 80 chrII:8684666-8684746 6.21e-01 80 chrI:8125426-8125506 1.69e-02 48_[+3(9.07e-05)]_24 chrX:12210529-12210609 2.82e-02 80 chrIII:6360871-6360951 2.05e-02 67_[+4(2.75e-05)]_5 chrII:4518421-4518501 2.61e-01 80 chrIII:7297222-7297302 6.56e-01 80 chrII:12738994-12739074 5.86e-01 80 chrX:4551118-4551198 3.77e-01 80 chrI:11913107-11913187 9.27e-02 80 chrII:12224659-12224739 5.81e-01 80 chrII:8016884-8016964 4.23e-02 38_[+4(2.75e-05)]_34 chrIII:7872906-7872986 2.90e-01 80 chrI:7759145-7759225 1.17e-02 53_[+3(5.52e-05)]_19 chrII:2204233-2204313 1.34e-02 80 chrI:1443696-1443776 1.29e-01 80 chrIII:2871941-2872021 9.37e-02 80 chrX:17062230-17062310 9.71e-01 80 chrIV:4401017-4401097 7.80e-01 80 chrV:904752-904832 4.98e-04 22_[+5(7.29e-06)]_50 chrIV:1347130-1347210 6.99e-02 80 chrII:10294481-10294561 1.02e-01 65_[+3(2.93e-05)]_7 chrV:10720002-10720082 8.86e-02 80 chrV:5269162-5269242 1.41e-02 50_[+1(8.14e-06)]_22 chrV:13081367-13081447 9.17e-01 80 chrI:7479400-7479480 7.50e-01 80 chrI:2571253-2571333 4.33e-01 80 chrV:6462600-6462680 7.36e-02 51_[+4(2.75e-05)]_21 chrI:2604320-2604400 8.54e-02 80 chrIII:10114836-10114916 2.94e-01 80 chrX:6052919-6052999 8.33e-01 80 chrIII:8125804-8125884 8.13e-01 80 chrV:728099-728179 1.62e-02 16_[+3(1.23e-05)]_37_[+3(2.93e-05)]_\ 11 chrI:7544737-7544817 1.69e-01 80 chrX:7743362-7743442 8.44e-01 80 chrII:6838465-6838545 5.72e-03 22_[+5(7.29e-06)]_50 chrIII:12555312-12555392 2.50e-01 80 chrIII:11825810-11825890 4.73e-03 23_[+1(8.14e-06)]_49 chrIII:12369116-12369196 9.87e-01 80 chrIV:12843016-12843096 9.60e-02 22_[+4(2.75e-05)]_2_[+4(6.36e-05)]_\ 26_[+4(2.75e-05)]_6 chrIII:12617033-12617113 3.44e-04 19_[+4(9.96e-05)]_40_[+3(1.23e-05)]_\ 5 chrV:15136932-15137012 1.15e-02 80 chrIII:7790675-7790755 2.28e-01 80 chrX:11555804-11555884 6.60e-01 80 chrI:853278-853358 9.77e-03 61_[+1(8.14e-06)]_11 chrIII:13530173-13530253 1.61e-05 44_[+1(8.14e-06)]_15_[+2(1.07e-05)]_\ 5 chrIII:7336327-7336407 3.16e-03 6_[+1(8.14e-06)]_66 chrII:5334074-5334154 9.44e-01 80 chrX:10900236-10900316 2.63e-01 80 chrV:13259597-13259677 9.77e-01 80 chrIII:11110913-11110993 4.15e-04 40_[+3(9.07e-05)]_9_[+2(1.07e-05)]_\ 15 chrV:11933352-11933432 1.61e-01 80 chrII:2787267-2787347 4.19e-02 80 chrX:2572554-2572634 2.94e-02 13_[+5(2.90e-05)]_59 chrX:13320830-13320910 3.13e-01 80 chrI:2710680-2710760 3.79e-01 80 chrV:6430117-6430197 2.69e-01 80 chrII:13065400-13065480 2.93e-01 80 chrIII:10203051-10203131 4.02e-01 80 chrV:14848729-14848809 6.07e-01 80 chrV:11799382-11799462 3.78e-01 80 chrII:8329096-8329176 3.69e-01 80 chrII:8884416-8884496 9.62e-01 80 chrV:14423380-14423460 1.67e-01 80 chrV:4508208-4508288 2.58e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************