******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-55.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:9985719-9985799 1.0000 80 chrV:10833021-10833101 1.0000 80 chrX:7964055-7964135 1.0000 80 chrIV:5519199-5519279 1.0000 80 chrIII:8880671-8880751 1.0000 80 chrX:4449873-4449953 1.0000 80 chrX:10081225-10081305 1.0000 80 chrIII:5371680-5371760 1.0000 80 chrV:20006804-20006884 1.0000 80 chrII:6129648-6129728 1.0000 80 chrI:7370255-7370335 1.0000 80 chrIII:7538212-7538292 1.0000 80 chrIII:5571213-5571293 1.0000 80 chrV:12889339-12889419 1.0000 80 chrI:12170838-12170918 1.0000 80 chrX:17466819-17466899 1.0000 80 chrIII:3096253-3096333 1.0000 80 chrII:3960496-3960576 1.0000 80 chrIV:16531805-16531885 1.0000 80 chrII:14792612-14792692 1.0000 80 chrX:11554822-11554902 1.0000 80 chrI:10327811-10327891 1.0000 80 chrII:12372669-12372749 1.0000 80 chrV:11274577-11274657 1.0000 80 chrV:13757518-13757598 1.0000 80 chrX:13645055-13645135 1.0000 80 chrIV:6954768-6954848 1.0000 80 chrIII:7552984-7553064 1.0000 80 chrIII:6297768-6297848 1.0000 80 chrI:5540782-5540862 1.0000 80 chrIII:8255059-8255139 1.0000 80 chrII:7885068-7885148 1.0000 80 chrX:7285962-7286042 1.0000 80 chrIV:13118911-13118991 1.0000 80 chrIII:3899052-3899132 1.0000 80 chrIII:4088703-4088783 1.0000 80 chrII:5309246-5309326 1.0000 80 chrII:1340233-1340313 1.0000 80 chrIV:5054465-5054545 1.0000 80 chrIII:10188076-10188156 1.0000 80 chrV:11850543-11850623 1.0000 80 chrIV:1816276-1816356 1.0000 80 chrIII:2438703-2438783 1.0000 80 chrX:2814461-2814541 1.0000 80 chrV:13683427-13683507 1.0000 80 chrV:12884209-12884289 1.0000 80 chrV:8751900-8751980 1.0000 80 chrX:2604796-2604876 1.0000 80 chrV:5862827-5862907 1.0000 80 chrI:14260643-14260723 1.0000 80 chrX:7322838-7322918 1.0000 80 chrV:9886424-9886504 1.0000 80 chrI:8195327-8195407 1.0000 80 chrIV:6249723-6249803 1.0000 80 chrII:4576956-4577036 1.0000 80 chrV:14930246-14930326 1.0000 80 chrIII:5755366-5755446 1.0000 80 chrV:9915117-9915197 1.0000 80 chrII:9325068-9325148 1.0000 80 chrIII:11039389-11039469 1.0000 80 chrX:5763492-5763572 1.0000 80 chrV:12161405-12161485 1.0000 80 chrIV:5103486-5103566 1.0000 80 chrIII:4204230-4204310 1.0000 80 chrIII:9542969-9543049 1.0000 80 chrI:9200276-9200356 1.0000 80 chrII:4267569-4267649 1.0000 80 chrX:9705763-9705843 1.0000 80 chrIII:10523224-10523304 1.0000 80 chrII:4807250-4807330 1.0000 80 chrIII:4035125-4035205 1.0000 80 chrX:13544554-13544634 1.0000 80 chrII:6705767-6705847 1.0000 80 chrII:8585288-8585368 1.0000 80 chrX:7678607-7678687 1.0000 80 chrII:8432566-8432646 1.0000 80 chrX:15027699-15027779 1.0000 80 chrX:5130947-5131027 1.0000 80 chrV:14007038-14007118 1.0000 80 chrV:10263825-10263905 1.0000 80 chrIII:11332473-11332553 1.0000 80 chrI:9494652-9494732 1.0000 80 chrIV:9932227-9932307 1.0000 80 chrIII:5990231-5990311 1.0000 80 chrIV:17285396-17285476 1.0000 80 chrX:5725028-5725108 1.0000 80 chrI:11839651-11839731 1.0000 80 chrI:8011464-8011544 1.0000 80 chrIII:13271008-13271088 1.0000 80 chrII:5276856-5276936 1.0000 80 chrI:5319360-5319440 1.0000 80 chrIV:5839322-5839402 1.0000 80 chrX:16807213-16807293 1.0000 80 chrX:16778135-16778215 1.0000 80 chrIII:13058312-13058392 1.0000 80 chrII:6117201-6117281 1.0000 80 chrIII:7580754-7580834 1.0000 80 chrIV:11788537-11788617 1.0000 80 chrI:3096335-3096415 1.0000 80 chrIII:13455981-13456061 1.0000 80 chrV:13115022-13115102 1.0000 80 chrX:13493908-13493988 1.0000 80 chrV:8494375-8494455 1.0000 80 chrI:8103101-8103181 1.0000 80 chrI:11187241-11187321 1.0000 80 chrV:7726356-7726436 1.0000 80 chrIII:1284760-1284840 1.0000 80 chrIII:13381858-13381938 1.0000 80 chrI:7430091-7430171 1.0000 80 chrI:13391262-13391342 1.0000 80 chrI:10866720-10866800 1.0000 80 chrI:10839188-10839268 1.0000 80 chrV:19057755-19057835 1.0000 80 chrII:9281803-9281883 1.0000 80 chrII:9207550-9207630 1.0000 80 chrI:9798451-9798531 1.0000 80 chrI:5537246-5537326 1.0000 80 chrI:9430687-9430767 1.0000 80 chrIII:8878063-8878143 1.0000 80 chrI:9796771-9796851 1.0000 80 chrX:5817343-5817423 1.0000 80 chrX:11241598-11241678 1.0000 80 chrI:9797932-9798012 1.0000 80 chrI:6637372-6637452 1.0000 80 chrI:10139971-10140051 1.0000 80 chrI:12426827-12426907 1.0000 80 chrII:2804377-2804457 1.0000 80 chrIV:11734259-11734339 1.0000 80 chrI:8580249-8580329 1.0000 80 chrV:7819080-7819160 1.0000 80 chrIV:11456284-11456364 1.0000 80 chrIV:3520536-3520616 1.0000 80 chrI:12175517-12175597 1.0000 80 chrI:11135798-11135878 1.0000 80 chrX:11068520-11068600 1.0000 80 chrV:15075050-15075130 1.0000 80 chrV:4775307-4775387 1.0000 80 chrIV:16476264-16476344 1.0000 80 chrV:5131569-5131649 1.0000 80 chrIII:8490420-8490500 1.0000 80 chrIV:12651711-12651791 1.0000 80 chrI:8027954-8028034 1.0000 80 chrIII:13272926-13273006 1.0000 80 chrIV:15259730-15259810 1.0000 80 chrIII:8395028-8395108 1.0000 80 chrIV:10650373-10650453 1.0000 80 chrV:16752551-16752631 1.0000 80 chrIV:13272711-13272791 1.0000 80 chrIV:5958653-5958733 1.0000 80 chrIII:7193431-7193511 1.0000 80 chrI:12920711-12920791 1.0000 80 chrIII:10517063-10517143 1.0000 80 chrV:16760126-16760206 1.0000 80 chrIII:4191399-4191479 1.0000 80 chrIII:8696833-8696913 1.0000 80 chrV:8215329-8215409 1.0000 80 chrII:9680002-9680082 1.0000 80 chrIV:8608383-8608463 1.0000 80 chrIII:6355478-6355558 1.0000 80 chrIV:8758759-8758839 1.0000 80 chrI:6574170-6574250 1.0000 80 chrV:13231767-13231847 1.0000 80 chrI:8901555-8901635 1.0000 80 chrII:7380620-7380700 1.0000 80 chrI:7396963-7397043 1.0000 80 chrII:31715-31795 1.0000 80 chrIV:17267645-17267725 1.0000 80 chrV:10255252-10255332 1.0000 80 chrII:9763750-9763830 1.0000 80 chrX:16997363-16997443 1.0000 80 chrII:11599914-11599994 1.0000 80 chrIV:4357441-4357521 1.0000 80 chrX:15956370-15956450 1.0000 80 chrII:11578494-11578574 1.0000 80 chrX:7257190-7257270 1.0000 80 chrIV:11813661-11813741 1.0000 80 chrIV:11785561-11785641 1.0000 80 chrV:20876794-20876874 1.0000 80 chrII:6227149-6227229 1.0000 80 chrI:1540628-1540708 1.0000 80 chrIII:1243381-1243461 1.0000 80 chrIV:14260903-14260983 1.0000 80 chrI:8938794-8938874 1.0000 80 chrIII:7781027-7781107 1.0000 80 chrX:2595374-2595454 1.0000 80 chrIV:8283351-8283431 1.0000 80 chrII:5955968-5956048 1.0000 80 chrII:6808629-6808709 1.0000 80 chrI:9852216-9852296 1.0000 80 chrIV:8144500-8144580 1.0000 80 chrI:7398870-7398950 1.0000 80 chrX:7873529-7873609 1.0000 80 chrIII:9270369-9270449 1.0000 80 chrIV:10461929-10462009 1.0000 80 chrX:12179985-12180065 1.0000 80 chrI:10040543-10040623 1.0000 80 chrX:12038895-12038975 1.0000 80 chrI:9248857-9248937 1.0000 80 chrIII:1905769-1905849 1.0000 80 chrIII:10960167-10960247 1.0000 80 chrI:5057023-5057103 1.0000 80 chrI:14899608-14899688 1.0000 80 chrIII:763228-763308 1.0000 80 chrIII:5153293-5153373 1.0000 80 chrIII:4658552-4658632 1.0000 80 chrX:13768697-13768777 1.0000 80 chrII:9667540-9667620 1.0000 80 chrX:11464550-11464630 1.0000 80 chrII:5302036-5302116 1.0000 80 chrI:13320170-13320250 1.0000 80 chrIII:5760044-5760124 1.0000 80 chrIII:9033945-9034025 1.0000 80 chrI:3785923-3786003 1.0000 80 chrI:3906333-3906413 1.0000 80 chrI:11137586-11137666 1.0000 80 chrX:5114923-5115003 1.0000 80 chrII:5305294-5305374 1.0000 80 chrV:7980530-7980610 1.0000 80 chrII:9209505-9209585 1.0000 80 chrV:14143792-14143872 1.0000 80 chrX:8490018-8490098 1.0000 80 chrIII:4219678-4219758 1.0000 80 chrII:6724060-6724140 1.0000 80 chrII:9010804-9010884 1.0000 80 chrII:15175284-15175364 1.0000 80 chrIII:764507-764587 1.0000 80 chrV:4966265-4966345 1.0000 80 chrX:3114879-3114959 1.0000 80 chrX:5031827-5031907 1.0000 80 chrI:10185747-10185827 1.0000 80 chrV:12100934-12101014 1.0000 80 chrI:4788579-4788659 1.0000 80 chrIII:3136120-3136200 1.0000 80 chrIII:7616304-7616384 1.0000 80 chrX:859564-859644 1.0000 80 chrIV:6601405-6601485 1.0000 80 chrX:11134991-11135071 1.0000 80 chrIII:13348122-13348202 1.0000 80 chrIV:6393444-6393524 1.0000 80 chrX:14478336-14478416 1.0000 80 chrV:6838765-6838845 1.0000 80 chrV:12184468-12184548 1.0000 80 chrV:965035-965115 1.0000 80 chrV:15469707-15469787 1.0000 80 chrIII:491238-491318 1.0000 80 chrIV:4577005-4577085 1.0000 80 chrII:8661675-8661755 1.0000 80 chrI:10045930-10046010 1.0000 80 chrI:39765-39845 1.0000 80 chrI:9707658-9707738 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_unc-55/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-55.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.303 C 0.191 G 0.184 T 0.321 Background letter frequencies (from file dataset with add-one prior applied): A 0.303 C 0.191 G 0.185 T 0.321 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RARARARA MEME-1 width = 8 sites = 97 llr = 680 E-value = 2.2e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif RARARARA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4a394a59 pos.-specific C 2::::::: probability G 5:716:51 matrix T :::::::: bits 2.4 2.2 2.0 1.7 * * Relative 1.5 * * Entropy 1.2 ***** * (10.1 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAAA consensus A A A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARARA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3114879-3114959 12 9.87e-06 AATGCGGTGT GAGAGAGA AAATAGAGAG chrII:6724060-6724140 60 9.87e-06 GAGTGCAAAT GAGAGAGA GAAAATGAAA chrI:9852216-9852296 19 9.87e-06 TAGGGGAAGG GAGAGAGA AAAAAGGAGG chrIV:12651711-12651791 68 9.87e-06 TCTATTCgag gagagaga aaatg chrII:9281803-9281883 42 9.87e-06 CTCTTAGAGT GAGAGAGA AAAGATGATT chrIII:13455981-13456061 1 9.87e-06 . GAGAGAGA GTGGAGAAAC chrI:3096335-3096415 44 9.87e-06 gagagagaga gagagaga gagagagaga chrIII:5755366-5755446 17 9.87e-06 gagagagaga gagagaga gagagagaga chrII:9010804-9010884 73 2.60e-05 tgatgatgag gagagaaa chrI:8027954-8028034 17 2.60e-05 TGCAAAAAAT GAGAGAAA ACTTTCAAGG chrX:5725028-5725108 54 2.60e-05 GCTAAGAGGC GAGAGAAA AAGAAAAGAA chrIII:5571213-5571293 52 2.60e-05 TCACATACAA GAGAGAAA AGTAATCCCA chrI:9707658-9707738 45 4.22e-05 GATTACACTA AAGAGAGA ATGACAGCAC chrI:3906333-3906413 42 4.22e-05 AGAGAAATTG AAGAGAGA ATCGATGGGA chrX:12179985-12180065 68 4.22e-05 ATGGGTGGAA AAGAGAGA GGGGG chrV:8215329-8215409 9 4.22e-05 ACGGACCG AAGAGAGA CTGGCGCCTC chrI:14899608-14899688 11 5.84e-05 TGGAGTAAGG GAGAAAGA GAGATGCAGG chrII:6808629-6808709 54 5.84e-05 tGGTTTTTGC GAGAAAGA GTGTATGCGA chrII:6227149-6227229 27 5.84e-05 TTATGAATTG GAGAAAGA AAAAGAAAAA chrV:9886424-9886504 39 5.84e-05 CGCGGAAAAA GAGAAAGA AGAGAAATAG chrI:39765-39845 65 1.11e-04 TTTTTTTCTG CAGAGAGA ATGGGGGA chrV:12100934-12101014 9 1.11e-04 GAGAATCA GAAAGAGA AGAAACGCAG chrII:5955968-5956048 49 1.11e-04 TTCATCATCA AAGAGAAA ACAGAGAAAA chrIII:7781027-7781107 58 1.11e-04 GTCAAAAAAT GAAAGAGA ACGAAAAAAA chrV:5131569-5131649 46 1.11e-04 GATTGAAGTG GAAAGAGA CGCAGGAGGC chrV:15075050-15075130 69 1.11e-04 CCGGAGGAGT CAGAGAGA CAGA chrI:13391262-13391342 64 1.11e-04 GAGTCATGGC AAGAGAAA TAGAGAAAA chrX:5763492-5763572 62 1.11e-04 AAGAAGAAAA AAGAGAAA GCAAACAAAA chrII:4576956-4577036 25 1.11e-04 TTTGGCATTC CAGAGAGA ATGGACCACC chrIII:1243381-1243461 12 1.38e-04 CCGAGACGCA GAGAAAAA GAGCGTCAGT chrII:31715-31795 73 1.38e-04 CATTCACAGC GAGAAAAA chrII:5276856-5276936 71 1.38e-04 CTCTGAAATG GAGAAAAA AG chrIII:4088703-4088783 49 1.38e-04 gtataaaatt gagaaAAA GGAGTAAATG chrIII:3899052-3899132 45 1.38e-04 ATCTGTGTAG GAGAAAAA AGTTGAAGAA chrX:13645055-13645135 38 1.38e-04 AAGAGGAGTG GAGAAAAA AGAGTATTCT chrII:3960496-3960576 48 1.38e-04 GAGAGAATTA GAGAAAAA AAAGAGCTCT chrIII:7538212-7538292 40 1.38e-04 ATCAAATGAC GAGAAAAA GAGGGAAAAG chrIII:9270369-9270449 16 1.50e-04 GAGTAAAGGA GAGGGAGA AGCTTATATG chrII:5309246-5309326 25 1.50e-04 CAAGAAAAAC GAGAGAGG ATATGTAGGA chrX:5031827-5031907 33 2.19e-04 Gaaaaaagta gaaagaaa aagaaaaaaa chrI:10040543-10040623 39 2.19e-04 GAAGAGTTGC GAAAGAAA AGATAGGGGA chrIV:14260903-14260983 4 2.19e-04 acg cagagaaa cagagTATAA chrV:10255252-10255332 2 2.19e-04 T CAGAGAAA ACGAGTGAAA chrIV:13272711-13272791 69 2.19e-04 GAAGCATATA AAGAAAGA AGAA chrIV:15259730-15259810 72 2.19e-04 CAGAGAGGCG CAGAGAAA A chrX:11241598-11241678 38 2.19e-04 agcaaaaaag gaaagaaa CAACGGGTCC chrV:10263825-10263905 58 2.19e-04 TCGAAATGAG AAGAAAGA TATGGAAAAG chrIV:1816276-1816356 14 2.19e-04 GAAGTGAAAC AAGAAAGA AGGCGAGACG chrIII:5371680-5371760 31 2.19e-04 GTGATTGTTG CAGAGAAA AGAGTCAAGA chrII:4267569-4267649 21 2.39e-04 TTGAGAGAGT GAGAGAAG ACTTTCTCTC chrI:10327811-10327891 61 2.39e-04 CATCTGAAAA GAGGGAAA GGAATAAATG chrV:12889339-12889419 28 2.39e-04 ATGGAAACTG GAGAGAAG GAGGGGACAC chrI:5057023-5057103 55 2.66e-04 AAGAAAACTG AAAAGAGA ATGACTTTAA chrV:14143792-14143872 38 3.52e-04 gaggaaaacg aagaaaaa taagaagGAC chrV:7980530-7980610 18 3.52e-04 CGGACAAGCA GAAAAAGA GTGGCCGCTT chrII:9207550-9207630 26 3.52e-04 CTAGAAACAC AAGAAAAA GTGAGTGGCG chrX:16778135-16778215 65 3.52e-04 tgaaaaaaaa aagaaaaa agcttgaa chrI:9494652-9494732 11 3.52e-04 AGCAAAAGCA AAGAAAAA AAGAAGAAAA chrV:5862827-5862907 69 3.52e-04 AATGACACCA GAAAAAGA CGAG chrX:859564-859644 63 3.72e-04 TCGATTGACG AAGAGAGG CTCACTTGTG chrIV:5958653-5958733 5 3.72e-04 CGAG AAGGGAGA TGCTCTCCCT chrI:8901555-8901635 2 4.52e-04 t aaaagaaa aggaaaaaca chrIII:4191399-4191479 41 4.52e-04 CAATACTTTC CAAAGAGA CGCAGACATA chrI:10866720-10866800 73 4.52e-04 TTCTTGAGAG CAAAGAGA chrIII:13381858-13381938 44 4.52e-04 CTTTTTTTCA AAAAGAAA TTGCAAAGAT chrIII:7552984-7553064 11 4.52e-04 tcTGACTGTG AAAAGAAA AGAAGCTCAC chrIII:5760044-5760124 69 5.23e-04 GATTTGTTGT CAGAAAAA CTTT chrIII:13058312-13058392 32 5.23e-04 TTTTTCTTTG GAAAAAAA AGACAATTTC chrX:15027699-15027779 5 5.23e-04 CCTC GAAAAAAA AAAATCGAGA chrIII:7193431-7193511 57 5.87e-04 GCATGACGGG AAGGGAAA ACACTCACAC chrI:8580249-8580329 59 5.87e-04 GGAAAAGGAG AAGAGAAG GAAAACAGAC chrI:9200276-9200356 71 5.87e-04 TTTTTCTTTG AAGGGAAA AA chrI:12170838-12170918 48 5.87e-04 GGCCGGAGGG AAGGGAAA CATGGGAAAA chrV:4966265-4966345 30 6.19e-04 GGAAATTGCA GAGGAAAA TGACAAATGA chrIII:4219678-4219758 2 6.19e-04 G GAGGAAAA GTTTTTTGAG chrX:13493908-13493988 31 6.19e-04 GAGAAAAGAG GAGAAAAG GCGATTGGTT chrII:11599914-11599994 55 6.94e-04 GCGGACTTTC AAAAAAGA GGGGTTTATT chrIV:10650373-10650453 3 6.94e-04 AC CAAAGAAA ACGACAAAAA chrI:5537246-5537326 46 6.94e-04 GAATTGAGCA AAAAAAGA GCAAAGTGAC chrII:4807250-4807330 48 6.94e-04 CTTTTTCAAA AAAAAAGA AGTACCTACT chrV:12161405-12161485 3 6.94e-04 AG AAAAAAGA GGTCCATAAA chrX:2814461-2814541 36 6.94e-04 ATTAATCAAA AAAAAAGA AGGAGTGTGC chrX:8490018-8490098 31 7.79e-04 ACTGAAAAAT AAGGAAGA TGCTTTTTTC chrI:7396963-7397043 29 7.79e-04 CAAGTACACG AAGAAAGG ATGAAGAGAA chrII:8661675-8661755 11 8.83e-04 TTTTTTCTTT AAAAAAAA GTGTTAAAAT chrIV:5054465-5054545 69 8.83e-04 GTATTTGAAA CAAAAAGA TGTA chrIII:764507-764587 22 1.02e-03 CAaagtagaa gaagaaga agaagTCGCG chrI:7398870-7398950 7 1.02e-03 AACACC AAGGAAAA TATCACAAGA chrI:11839651-11839731 55 1.02e-03 AAAATAGTGT GAAAAAGG TGAGAGACGC chrIII:10523224-10523304 54 1.02e-03 GAATAGGGGG GAAGAAGA AAGTGGTCAA chrV:11850543-11850623 58 1.02e-03 AACTTTAACT AAGAAAAG AAGATTAAGT chrIII:6297768-6297848 54 1.08e-03 tcttttcttc CAAAAAAA TCGAGTATTC chrIV:8283351-8283431 12 1.15e-03 GGAACATTCA AAAAGAAG TTGCATTTCA chrX:7257190-7257270 26 1.15e-03 AGCTGGCGCA AAAAGAAG ACGAATACTG chrIII:9985719-9985799 4 1.15e-03 TTT CAAAGAGG CGGCATCTGT chrX:11134991-11135071 59 1.26e-03 GGAATTACAC GAAGGAGG AGTCTCACTT chrX:11554822-11554902 39 1.35e-03 TCTGGAGCAA CAAAGAAG ACGTTTCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARARA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3114879-3114959 9.9e-06 11_[+1]_61 chrII:6724060-6724140 9.9e-06 59_[+1]_13 chrI:9852216-9852296 9.9e-06 18_[+1]_54 chrIV:12651711-12651791 9.9e-06 67_[+1]_5 chrII:9281803-9281883 9.9e-06 41_[+1]_31 chrIII:13455981-13456061 9.9e-06 [+1]_72 chrI:3096335-3096415 9.9e-06 43_[+1]_29 chrIII:5755366-5755446 9.9e-06 16_[+1]_56 chrII:9010804-9010884 2.6e-05 72_[+1] chrI:8027954-8028034 2.6e-05 16_[+1]_56 chrX:5725028-5725108 2.6e-05 53_[+1]_19 chrIII:5571213-5571293 2.6e-05 51_[+1]_21 chrI:9707658-9707738 4.2e-05 44_[+1]_28 chrI:3906333-3906413 4.2e-05 41_[+1]_31 chrX:12179985-12180065 4.2e-05 67_[+1]_5 chrV:8215329-8215409 4.2e-05 8_[+1]_64 chrI:14899608-14899688 5.8e-05 10_[+1]_62 chrII:6808629-6808709 5.8e-05 53_[+1]_19 chrII:6227149-6227229 5.8e-05 26_[+1]_46 chrV:9886424-9886504 5.8e-05 38_[+1]_34 chrI:39765-39845 0.00011 64_[+1]_8 chrV:12100934-12101014 0.00011 8_[+1]_64 chrII:5955968-5956048 0.00011 48_[+1]_24 chrIII:7781027-7781107 0.00011 57_[+1]_15 chrV:5131569-5131649 0.00011 45_[+1]_27 chrV:15075050-15075130 0.00011 68_[+1]_4 chrI:13391262-13391342 0.00011 63_[+1]_9 chrX:5763492-5763572 0.00011 61_[+1]_11 chrII:4576956-4577036 0.00011 24_[+1]_48 chrIII:1243381-1243461 0.00014 11_[+1]_61 chrII:31715-31795 0.00014 72_[+1] chrII:5276856-5276936 0.00014 70_[+1]_2 chrIII:4088703-4088783 0.00014 48_[+1]_24 chrIII:3899052-3899132 0.00014 44_[+1]_28 chrX:13645055-13645135 0.00014 37_[+1]_35 chrII:3960496-3960576 0.00014 47_[+1]_25 chrIII:7538212-7538292 0.00014 39_[+1]_33 chrIII:9270369-9270449 0.00015 15_[+1]_57 chrII:5309246-5309326 0.00015 24_[+1]_48 chrX:5031827-5031907 0.00022 32_[+1]_40 chrI:10040543-10040623 0.00022 38_[+1]_34 chrIV:14260903-14260983 0.00022 3_[+1]_69 chrV:10255252-10255332 0.00022 1_[+1]_71 chrIV:13272711-13272791 0.00022 68_[+1]_4 chrIV:15259730-15259810 0.00022 71_[+1]_1 chrX:11241598-11241678 0.00022 37_[+1]_35 chrV:10263825-10263905 0.00022 57_[+1]_15 chrIV:1816276-1816356 0.00022 13_[+1]_59 chrIII:5371680-5371760 0.00022 30_[+1]_42 chrII:4267569-4267649 0.00024 20_[+1]_52 chrI:10327811-10327891 0.00024 60_[+1]_12 chrV:12889339-12889419 0.00024 27_[+1]_45 chrI:5057023-5057103 0.00027 54_[+1]_18 chrV:14143792-14143872 0.00035 37_[+1]_35 chrV:7980530-7980610 0.00035 17_[+1]_55 chrII:9207550-9207630 0.00035 25_[+1]_47 chrX:16778135-16778215 0.00035 64_[+1]_8 chrI:9494652-9494732 0.00035 10_[+1]_62 chrV:5862827-5862907 0.00035 68_[+1]_4 chrX:859564-859644 0.00037 62_[+1]_10 chrIV:5958653-5958733 0.00037 4_[+1]_68 chrI:8901555-8901635 0.00045 1_[+1]_71 chrIII:4191399-4191479 0.00045 40_[+1]_32 chrI:10866720-10866800 0.00045 72_[+1] chrIII:13381858-13381938 0.00045 43_[+1]_29 chrIII:7552984-7553064 0.00045 10_[+1]_62 chrIII:5760044-5760124 0.00052 68_[+1]_4 chrIII:13058312-13058392 0.00052 31_[+1]_41 chrX:15027699-15027779 0.00052 4_[+1]_68 chrIII:7193431-7193511 0.00059 56_[+1]_16 chrI:8580249-8580329 0.00059 58_[+1]_14 chrI:9200276-9200356 0.00059 70_[+1]_2 chrI:12170838-12170918 0.00059 47_[+1]_25 chrV:4966265-4966345 0.00062 29_[+1]_43 chrIII:4219678-4219758 0.00062 1_[+1]_71 chrX:13493908-13493988 0.00062 30_[+1]_42 chrII:11599914-11599994 0.00069 54_[+1]_18 chrIV:10650373-10650453 0.00069 2_[+1]_70 chrI:5537246-5537326 0.00069 45_[+1]_27 chrII:4807250-4807330 0.00069 47_[+1]_25 chrV:12161405-12161485 0.00069 2_[+1]_70 chrX:2814461-2814541 0.00069 35_[+1]_37 chrX:8490018-8490098 0.00078 30_[+1]_42 chrI:7396963-7397043 0.00078 28_[+1]_44 chrII:8661675-8661755 0.00088 10_[+1]_62 chrIV:5054465-5054545 0.00088 68_[+1]_4 chrIII:764507-764587 0.001 21_[+1]_51 chrI:7398870-7398950 0.001 6_[+1]_66 chrI:11839651-11839731 0.001 54_[+1]_18 chrIII:10523224-10523304 0.001 53_[+1]_19 chrV:11850543-11850623 0.001 57_[+1]_15 chrIII:6297768-6297848 0.0011 53_[+1]_19 chrIV:8283351-8283431 0.0012 11_[+1]_61 chrX:7257190-7257270 0.0012 25_[+1]_47 chrIII:9985719-9985799 0.0012 3_[+1]_69 chrX:11134991-11135071 0.0013 58_[+1]_14 chrX:11554822-11554902 0.0014 38_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARARA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RARARARA width=8 seqs=97 chrX:3114879-3114959 ( 12) GAGAGAGA 1 chrII:6724060-6724140 ( 60) GAGAGAGA 1 chrI:9852216-9852296 ( 19) GAGAGAGA 1 chrIV:12651711-12651791 ( 68) GAGAGAGA 1 chrII:9281803-9281883 ( 42) GAGAGAGA 1 chrIII:13455981-13456061 ( 1) GAGAGAGA 1 chrI:3096335-3096415 ( 44) GAGAGAGA 1 chrIII:5755366-5755446 ( 17) GAGAGAGA 1 chrII:9010804-9010884 ( 73) GAGAGAAA 1 chrI:8027954-8028034 ( 17) GAGAGAAA 1 chrX:5725028-5725108 ( 54) GAGAGAAA 1 chrIII:5571213-5571293 ( 52) GAGAGAAA 1 chrI:9707658-9707738 ( 45) AAGAGAGA 1 chrI:3906333-3906413 ( 42) AAGAGAGA 1 chrX:12179985-12180065 ( 68) AAGAGAGA 1 chrV:8215329-8215409 ( 9) AAGAGAGA 1 chrI:14899608-14899688 ( 11) GAGAAAGA 1 chrII:6808629-6808709 ( 54) GAGAAAGA 1 chrII:6227149-6227229 ( 27) GAGAAAGA 1 chrV:9886424-9886504 ( 39) GAGAAAGA 1 chrI:39765-39845 ( 65) CAGAGAGA 1 chrV:12100934-12101014 ( 9) GAAAGAGA 1 chrII:5955968-5956048 ( 49) AAGAGAAA 1 chrIII:7781027-7781107 ( 58) GAAAGAGA 1 chrV:5131569-5131649 ( 46) GAAAGAGA 1 chrV:15075050-15075130 ( 69) CAGAGAGA 1 chrI:13391262-13391342 ( 64) AAGAGAAA 1 chrX:5763492-5763572 ( 62) AAGAGAAA 1 chrII:4576956-4577036 ( 25) CAGAGAGA 1 chrIII:1243381-1243461 ( 12) GAGAAAAA 1 chrII:31715-31795 ( 73) GAGAAAAA 1 chrII:5276856-5276936 ( 71) GAGAAAAA 1 chrIII:4088703-4088783 ( 49) GAGAAAAA 1 chrIII:3899052-3899132 ( 45) GAGAAAAA 1 chrX:13645055-13645135 ( 38) GAGAAAAA 1 chrII:3960496-3960576 ( 48) GAGAAAAA 1 chrIII:7538212-7538292 ( 40) GAGAAAAA 1 chrIII:9270369-9270449 ( 16) GAGGGAGA 1 chrII:5309246-5309326 ( 25) GAGAGAGG 1 chrX:5031827-5031907 ( 33) GAAAGAAA 1 chrI:10040543-10040623 ( 39) GAAAGAAA 1 chrIV:14260903-14260983 ( 4) CAGAGAAA 1 chrV:10255252-10255332 ( 2) CAGAGAAA 1 chrIV:13272711-13272791 ( 69) AAGAAAGA 1 chrIV:15259730-15259810 ( 72) CAGAGAAA 1 chrX:11241598-11241678 ( 38) GAAAGAAA 1 chrV:10263825-10263905 ( 58) AAGAAAGA 1 chrIV:1816276-1816356 ( 14) AAGAAAGA 1 chrIII:5371680-5371760 ( 31) CAGAGAAA 1 chrII:4267569-4267649 ( 21) GAGAGAAG 1 chrI:10327811-10327891 ( 61) GAGGGAAA 1 chrV:12889339-12889419 ( 28) GAGAGAAG 1 chrI:5057023-5057103 ( 55) AAAAGAGA 1 chrV:14143792-14143872 ( 38) AAGAAAAA 1 chrV:7980530-7980610 ( 18) GAAAAAGA 1 chrII:9207550-9207630 ( 26) AAGAAAAA 1 chrX:16778135-16778215 ( 65) AAGAAAAA 1 chrI:9494652-9494732 ( 11) AAGAAAAA 1 chrV:5862827-5862907 ( 69) GAAAAAGA 1 chrX:859564-859644 ( 63) AAGAGAGG 1 chrIV:5958653-5958733 ( 5) AAGGGAGA 1 chrI:8901555-8901635 ( 2) AAAAGAAA 1 chrIII:4191399-4191479 ( 41) CAAAGAGA 1 chrI:10866720-10866800 ( 73) CAAAGAGA 1 chrIII:13381858-13381938 ( 44) AAAAGAAA 1 chrIII:7552984-7553064 ( 11) AAAAGAAA 1 chrIII:5760044-5760124 ( 69) CAGAAAAA 1 chrIII:13058312-13058392 ( 32) GAAAAAAA 1 chrX:15027699-15027779 ( 5) GAAAAAAA 1 chrIII:7193431-7193511 ( 57) AAGGGAAA 1 chrI:8580249-8580329 ( 59) AAGAGAAG 1 chrI:9200276-9200356 ( 71) AAGGGAAA 1 chrI:12170838-12170918 ( 48) AAGGGAAA 1 chrV:4966265-4966345 ( 30) GAGGAAAA 1 chrIII:4219678-4219758 ( 2) GAGGAAAA 1 chrX:13493908-13493988 ( 31) GAGAAAAG 1 chrII:11599914-11599994 ( 55) AAAAAAGA 1 chrIV:10650373-10650453 ( 3) CAAAGAAA 1 chrI:5537246-5537326 ( 46) AAAAAAGA 1 chrII:4807250-4807330 ( 48) AAAAAAGA 1 chrV:12161405-12161485 ( 3) AAAAAAGA 1 chrX:2814461-2814541 ( 36) AAAAAAGA 1 chrX:8490018-8490098 ( 31) AAGGAAGA 1 chrI:7396963-7397043 ( 29) AAGAAAGG 1 chrII:8661675-8661755 ( 11) AAAAAAAA 1 chrIV:5054465-5054545 ( 69) CAAAAAGA 1 chrIII:764507-764587 ( 22) GAAGAAGA 1 chrI:7398870-7398950 ( 7) AAGGAAAA 1 chrI:11839651-11839731 ( 55) GAAAAAGG 1 chrIII:10523224-10523304 ( 54) GAAGAAGA 1 chrV:11850543-11850623 ( 58) AAGAAAAG 1 chrIII:6297768-6297848 ( 54) CAAAAAAA 1 chrIV:8283351-8283431 ( 12) AAAAGAAG 1 chrX:7257190-7257270 ( 26) AAAAGAAG 1 chrIII:9985719-9985799 ( 4) CAAAGAGG 1 chrX:11134991-11135071 ( 59) GAAGGAGG 1 chrX:11554822-11554902 ( 39) CAAAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARARA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 2.2e-021 29 -30 136 -1324 172 -1324 -1324 -1324 17 -1324 184 -1324 151 -1324 -46 -1324 51 -1324 162 -1324 172 -1324 -1324 -1324 77 -1324 139 -1324 150 -1324 -35 -1324 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARARA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 2.2e-021 0.371134 0.154639 0.474227 0.000000 1.000000 0.000000 0.000000 0.000000 0.340206 0.000000 0.659794 0.000000 0.865979 0.000000 0.134021 0.000000 0.432990 0.000000 0.567010 0.000000 1.000000 0.000000 0.000000 0.000000 0.515464 0.000000 0.484536 0.000000 0.855670 0.000000 0.144330 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARARA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]A[GA]A[GA]A[AG]A -------------------------------------------------------------------------------- Time 4.76 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTTCTYT MEME-2 width = 8 sites = 121 llr = 801 E-value = 5.0e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTTCTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 432:8163 probability G :::::::: matrix T 678a2947 bits 2.4 2.2 2.0 1.7 * Relative 1.5 ** Entropy 1.2 *** (9.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTCT consensus CC TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8661675-8661755 57 6.37e-05 CCCTACCGCA CTTTCTCT TTGTGACGTC chrIV:6393444-6393524 12 6.37e-05 CTGTGCTCAT TTTTCTCT GTCTCTTTGg chrI:4788579-4788659 22 6.37e-05 CTTCCGCTCA CTTTCTCT CCGTCTCCAC chrII:5302036-5302116 28 6.37e-05 GTAAGACTTC TTTTCTCT TTGCAAAAAC chrI:9248857-9248937 56 6.37e-05 AATTTTGCCT CTTTCTCT GCGTTTCTCT chrIII:7781027-7781107 33 6.37e-05 TTTCTCATGC TTTTCTCT GGTTTCGGTC chrV:20876794-20876874 65 6.37e-05 TCACCCTTCT CTTTCTCT TCTAAATT chrIV:11813661-11813741 38 6.37e-05 TCCAAGGAAT TTTTCTCT GTCTCTCTCT chrI:6574170-6574250 36 6.37e-05 GTATTCAGGA CTTTCTCT CTTTTTTCCT chrIV:8608383-8608463 70 6.37e-05 CTCCATGTTA TTTTCTCT AAA chrIII:8696833-8696913 15 6.37e-05 ACATTCGTCA CTTTCTCT CATTCTCTCG chrV:15075050-15075130 21 6.37e-05 tcttcttctt ctttctct ctgttctCTA chrIII:8878063-8878143 34 6.37e-05 tcgagttcat ttttcTCT CGTCTTCAGA chrI:10839188-10839268 73 6.37e-05 AGCAGAGATG TTTTCTCT chrI:7430091-7430171 66 6.37e-05 ATTTTTCTTT TTTTCTCT ATTTCCC chrIII:1284760-1284840 48 6.37e-05 TTGCGTCTTT CTTTCTCT AAATCTCTAC chrIII:13058312-13058392 11 6.37e-05 CATATTTACT TTTTCTCT TTTTTTTTCT chrIV:5839322-5839402 24 6.37e-05 TCATAATCCC TTTTCTCT TCTTTCCAAA chrIII:5990231-5990311 33 6.37e-05 CTTTTTTTCT TTTTCTCT TCTCCGAAAA chrII:4267569-4267649 30 6.37e-05 TGAGAGAAGA CTTTCTCT CAAAAGTTTT chrIV:5103486-5103566 21 6.37e-05 AAACAAAACA TTTtctct ctcaattctc chrIII:10188076-10188156 34 6.37e-05 TTCGGTCTCT CTTTCTCT TTCTTCTACA chrIII:8255059-8255139 52 6.37e-05 CACTTTCGTT CTTTCTCT GCCAACAATT chrI:5540782-5540862 11 6.37e-05 ctttctatct ctttctct tttcctctct chrIII:6297768-6297848 36 6.37e-05 catctcgtca ttttctct tcttttcttc chrX:10081225-10081305 16 6.37e-05 GACTAATCCT TTTTCTCT TTGCATCGTT chrX:13768697-13768777 44 1.02e-04 CTATTCTTTT CTTTCTCC ATCTGCTTCT chrI:1540628-1540708 20 1.02e-04 CCGTGTGTTT CTTTCTCC ATTGCCCCCC chrIV:16476264-16476344 7 1.02e-04 TTGCAT TTTTCTCC AGGGACATTC chrIV:17285396-17285476 48 1.02e-04 GTTCGTCAGG TTTTCTCC AGCTTTATAA chrV:13683427-13683507 38 1.02e-04 TTTTTCCGTT TTTTCTCC TCCCTATATG chrIV:6601405-6601485 54 1.39e-04 CCCTCCGTCT TCTTCTCT ATACTTGTAA chrIII:9542969-9543049 47 1.39e-04 CTAACTCTTA TCTTCTCT GCGTAACGAT chrI:10327811-10327891 10 1.39e-04 GACTTCTCT CCTTCTCT GCGTCTCTAT chrX:7964055-7964135 60 1.39e-04 ATCTGTCACT TCTTCTCT TCCGAAAACT chrIV:4577005-4577085 4 1.62e-04 TCC CCTTCTCC TCCATTGTTC chrV:19057755-19057835 52 1.62e-04 AATCATTCCT TCTTCTCC GTTTCACTCC chrIII:13271008-13271088 7 1.62e-04 TCTTTT CCTTCTCC TCAACAACTT chrI:10045930-10046010 57 3.07e-04 ctctctctct ctctctct ctctctctcG chrV:14143792-14143872 68 3.07e-04 CTTCTTTTTT TTTTCTTT TTTTC chrI:3785923-3786003 56 3.07e-04 CGCAATACTC TTTTCTTT TTATGTATTT chrII:6808629-6808709 19 3.07e-04 tcgtcttctt ttttcttt tcttttcctt chrII:7380620-7380700 48 3.07e-04 GAAGTTATAT TTTTCTTT GACGTCTCTC chrII:9680002-9680082 63 3.07e-04 TACTATTCCA TTTTCTTT GCCTCCGTCT chrV:16760126-16760206 63 3.07e-04 ccatctctat ctctctct ggatctctCT chrIII:13272926-13273006 17 3.07e-04 GCTCATTCAT CTTTCTTT CCCCCCAAGA chrII:2804377-2804457 20 3.07e-04 TCCATTTCTC TTTTCTTT TGCAAATATC chrI:6637372-6637452 18 3.07e-04 TCCTTCTTCT TTTTCTTT TTTCGACGAC chrI:8103101-8103181 18 3.07e-04 CTCTCGGATG TTCTCTCT GTCTCTTCTT chrV:8494375-8494455 50 3.07e-04 CCTCGTTCCA TTCTCTCT TTCATTTATC chrI:8011464-8011544 65 3.07e-04 TCACTATTCT TTTTCTTT TCGTTTCT chrX:13544554-13544634 43 3.07e-04 AAGTTTTTCG CTTTCTTT TCATCTGCGA chrI:9200276-9200356 62 3.07e-04 TATTTCTAGT TTTTCTTT GAAGGGAAAA chrII:9325068-9325148 15 3.07e-04 attcctctct ctctctct gtccgctctT chrIV:5054465-5054545 16 3.07e-04 CACTAATCCC CTTTCTTT TACTTTTGGA chrIV:13118911-13118991 58 3.07e-04 CATCATCATA CTCTCTCT TTTGCAGTCA chrIII:7552984-7553064 45 3.07e-04 ACTAGAGTCC CTCTCTCT TCCGCCCTCT chrII:3960496-3960576 62 3.07e-04 AAAAAAAGAG CTCTCTCT TCCCATTTTT chrII:6129648-6129728 32 3.07e-04 ATTCAGTTTT TTTTCTTT TCTGATTGAA chrIII:3136120-3136200 63 3.93e-04 TTTTCTCATC TTTTCTTC TTTTTTATAT chrV:7980530-7980610 62 3.93e-04 TTCTTCTTTT TTTTCTTC TTGAGCTTCG chrIII:9033945-9034025 45 3.93e-04 TTTGATCCCC TTTTCTTC TATAATCCTC chrX:11464550-11464630 33 3.93e-04 ATCTCCGTTT CTTTCTTC TCATCTCCAA chrIII:10960167-10960247 47 3.93e-04 TCCCCCACTG CTTTCTTC ATCTTCTTGT chrI:7398870-7398950 66 3.93e-04 GTTCTCCTGT TTTTCTTC ACTATTT chrI:11187241-11187321 17 3.93e-04 TTTTCCCCAA TTTTCTTC GACTTTTCGG chrX:4449873-4449953 66 3.93e-04 TTTATTTGGA TTTTCTTC CATTAAC chrV:10833021-10833101 17 3.93e-04 CTTTTCCAAT TTTTCTTC TTCTCGCCGT chrX:5114923-5115003 43 4.79e-04 gtcgtcttcg tcttcTTT AGTTTTTTGA chrIV:8144500-8144580 20 4.79e-04 TCCAGATGCA TCTTCTTT GAATAATGTG chrIII:6355478-6355558 51 4.79e-04 GCACAATCCA TCCTCTCT CACTTTCCCT chrV:4775307-4775387 61 4.79e-04 CGTCTCTCAC TCTTCTTT TCTCGAGAGT chrI:9797932-9798012 21 4.79e-04 tagatcatct tcttcttt ttTTGTGTTT chrI:9796771-9796851 53 4.79e-04 TTTTCCAGCT CCCTCTCT TTTCATATTT chrV:14930246-14930326 43 4.79e-04 CTCGTCGGCT TCTTCTTT GTGAGTGAGA chrX:2604796-2604876 59 4.79e-04 CATTCAAAAA TCTTCTTT TCTCATTTTC chrIII:763228-763308 18 5.31e-04 TTTCCTTTTT CCTTCTTC CCTCAATTTC chrIII:10517063-10517143 63 5.31e-04 AGcttcttct tcttcttc gtcttcaccg chrI:14260643-14260723 31 5.31e-04 AATTCAGTCG TCTTCTTC TCAATGTCTG chrV:12100934-12101014 50 5.94e-04 TGTCTTTTCA CTCTCTTT CTGTCTAACG chrI:8027954-8028034 72 5.94e-04 TCGCCACGAT TTCTCTTT G chrII:8432566-8432646 61 5.94e-04 AAACGTATCA TTCTCTTT TTTTCGAACA chrIV:6954768-6954848 61 5.94e-04 TCTTTTCACA TTCTCTTT GAATATATAA chrIV:11456284-11456364 50 6.32e-04 AACTCCCCGT TTTTCCCT TCATCATCAT chrI:12426827-12426907 20 6.32e-04 AAATAATTCA TTTTCCCT ATAACATAAA chrIII:11332473-11332553 14 6.32e-04 AACTTCTTGG CTTTCCCT ATTTTTTGCG chrI:39765-39845 56 7.77e-04 CATCGAAAGT TTTTTTCT GCAGAGAGAA chrIV:12651711-12651791 20 7.77e-04 CTGTTTCTTC CTTTTTCT GTCATCTTCC chrX:11241598-11241678 70 7.77e-04 GCTTCTCTTA CTCTCTTC GTT chrV:9915117-9915197 39 7.77e-04 TGTATGAGCA TTCTCTTC TCATTATCTA chrV:12884209-12884289 20 7.77e-04 GAAAACCGGT TTTTTTCT AAATTAAAAA chrII:9281803-9281883 68 7.99e-04 TTGCGAAATG TTTTCCCC GTTTT chrX:8490018-8490098 42 8.63e-04 AGGAAGATGC TTTTTTCC TACATTTTTT chrV:5131569-5131649 22 8.63e-04 TTGCGAAATC TTTTTTCC TCACAGGATT chrIV:3520536-3520616 70 8.63e-04 GAATGCCAAG TTTTTTCC ACG chrIV:6249723-6249803 17 8.63e-04 TTTCTAATCC TTTTTTCC TTTTTTGCTA chrV:20006804-20006884 48 8.63e-04 TGATTAATGT CTTTTTCC CGTCTTGCTA chrX:2595374-2595454 23 9.01e-04 TTGCAATCTT TCCTCTTT TCGACTACTC chrI:10139971-10140051 23 9.01e-04 CGTTGTTATT TCCTCTTT TTTTTCGAGA chrIII:3899052-3899132 14 9.24e-04 CAAGAATATC TCTTCCCT ATCTTTCCTA chrIV:1816276-1816356 71 1.01e-03 TGTTATACCC CCTTTTCT GC chrIII:7616304-7616384 59 1.15e-03 TTATAATGTT CCTTTTCC CATTGATATT chrIV:5958653-5958733 15 1.15e-03 AAGGGAGATG CTCTCCCT TGAAAATACA chrI:9430687-9430767 53 1.15e-03 ATCTCTGTCt ccttttcc ttttttcatt chrX:7678607-7678687 70 1.15e-03 GTTTCTTCGT CCTTTTCC TTC chrX:13645055-13645135 53 1.15e-03 AAAAGAGTAT TCTTTTCC CAGTTTCGAC chrIV:4357441-4357521 66 1.39e-03 acttgccaaa tttttttt attggcg chrI:12175517-12175597 59 1.39e-03 TCTTAACAAA TTTTTTTT GAAAATATAA chrI:13391262-13391342 9 1.39e-03 CAAAATAT TTTTTTTT TCATCAGAAA chrIII:13381858-13381938 34 1.39e-03 ATAGTTTTCA CTTTTTTT CAAAAAGAAA chrI:8938794-8938874 49 1.59e-03 ATTTTCATCC CTTTTTTC AAATCTTTCT chrI:9798451-9798531 12 1.59e-03 TTTTAGCCAA TTTTTTTC AATTTCTCTA chrIV:11788537-11788617 69 1.59e-03 AATTATCCAT CTTTTTTC GTCG chrI:8195327-8195407 10 1.64e-03 AATGAGATA TCCTCCCT CACTGGTTCC chrI:14899608-14899688 58 1.78e-03 TAGTGAACGT TCTTTTTT GTTCGAAAAA chrIII:10523224-10523304 29 1.78e-03 AGATGATGTT TCTTTTTT ACGAGCGGAA chrX:16997363-16997443 31 1.81e-03 ATGCGTATGT TCCTCCCC ACAGCGATCT chrIII:7580754-7580834 40 1.81e-03 GTGCTCAAAC CCTTCCTC GTCCCAAGCT chrII:4807250-4807330 36 2.04e-03 TTTTCATGAC TTCTTTTT CAAAAAAAAA chrIV:5519199-5519279 33 2.13e-03 GAAGACACAT TTCTCCTC TTATCTTTTC chrX:7285962-7286042 21 2.19e-03 CAAGTTTCGT TTCTTTTC ATTCATCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8661675-8661755 6.4e-05 56_[+2]_16 chrIV:6393444-6393524 6.4e-05 11_[+2]_61 chrI:4788579-4788659 6.4e-05 21_[+2]_51 chrII:5302036-5302116 6.4e-05 27_[+2]_45 chrI:9248857-9248937 6.4e-05 55_[+2]_17 chrIII:7781027-7781107 6.4e-05 32_[+2]_40 chrV:20876794-20876874 6.4e-05 64_[+2]_8 chrIV:11813661-11813741 6.4e-05 37_[+2]_35 chrI:6574170-6574250 6.4e-05 35_[+2]_37 chrIV:8608383-8608463 6.4e-05 69_[+2]_3 chrIII:8696833-8696913 6.4e-05 14_[+2]_58 chrV:15075050-15075130 6.4e-05 20_[+2]_52 chrIII:8878063-8878143 6.4e-05 33_[+2]_39 chrI:10839188-10839268 6.4e-05 72_[+2] chrI:7430091-7430171 6.4e-05 65_[+2]_7 chrIII:1284760-1284840 6.4e-05 47_[+2]_25 chrIII:13058312-13058392 6.4e-05 10_[+2]_62 chrIV:5839322-5839402 6.4e-05 23_[+2]_49 chrIII:5990231-5990311 6.4e-05 32_[+2]_40 chrII:4267569-4267649 6.4e-05 29_[+2]_43 chrIV:5103486-5103566 6.4e-05 20_[+2]_52 chrIII:10188076-10188156 6.4e-05 33_[+2]_39 chrIII:8255059-8255139 6.4e-05 51_[+2]_21 chrI:5540782-5540862 6.4e-05 10_[+2]_62 chrIII:6297768-6297848 6.4e-05 35_[+2]_37 chrX:10081225-10081305 6.4e-05 15_[+2]_57 chrX:13768697-13768777 0.0001 43_[+2]_29 chrI:1540628-1540708 0.0001 19_[+2]_53 chrIV:16476264-16476344 0.0001 6_[+2]_66 chrIV:17285396-17285476 0.0001 47_[+2]_25 chrV:13683427-13683507 0.0001 37_[+2]_35 chrIV:6601405-6601485 0.00014 53_[+2]_19 chrIII:9542969-9543049 0.00014 46_[+2]_26 chrI:10327811-10327891 0.00014 9_[+2]_63 chrX:7964055-7964135 0.00014 59_[+2]_13 chrIV:4577005-4577085 0.00016 3_[+2]_69 chrV:19057755-19057835 0.00016 51_[+2]_21 chrIII:13271008-13271088 0.00016 6_[+2]_66 chrI:10045930-10046010 0.00031 56_[+2]_16 chrV:14143792-14143872 0.00031 67_[+2]_5 chrI:3785923-3786003 0.00031 55_[+2]_17 chrII:6808629-6808709 0.00031 18_[+2]_54 chrII:7380620-7380700 0.00031 47_[+2]_25 chrII:9680002-9680082 0.00031 62_[+2]_10 chrV:16760126-16760206 0.00031 62_[+2]_10 chrIII:13272926-13273006 0.00031 16_[+2]_56 chrII:2804377-2804457 0.00031 19_[+2]_53 chrI:6637372-6637452 0.00031 17_[+2]_55 chrI:8103101-8103181 0.00031 17_[+2]_55 chrV:8494375-8494455 0.00031 49_[+2]_23 chrI:8011464-8011544 0.00031 64_[+2]_8 chrX:13544554-13544634 0.00031 42_[+2]_30 chrI:9200276-9200356 0.00031 61_[+2]_11 chrII:9325068-9325148 0.00031 14_[+2]_58 chrIV:5054465-5054545 0.00031 15_[+2]_57 chrIV:13118911-13118991 0.00031 57_[+2]_15 chrIII:7552984-7553064 0.00031 44_[+2]_28 chrII:3960496-3960576 0.00031 61_[+2]_11 chrII:6129648-6129728 0.00031 31_[+2]_41 chrIII:3136120-3136200 0.00039 62_[+2]_10 chrV:7980530-7980610 0.00039 61_[+2]_11 chrIII:9033945-9034025 0.00039 44_[+2]_28 chrX:11464550-11464630 0.00039 32_[+2]_40 chrIII:10960167-10960247 0.00039 46_[+2]_26 chrI:7398870-7398950 0.00039 65_[+2]_7 chrI:11187241-11187321 0.00039 16_[+2]_56 chrX:4449873-4449953 0.00039 65_[+2]_7 chrV:10833021-10833101 0.00039 16_[+2]_56 chrX:5114923-5115003 0.00048 42_[+2]_30 chrIV:8144500-8144580 0.00048 19_[+2]_53 chrIII:6355478-6355558 0.00048 50_[+2]_22 chrV:4775307-4775387 0.00048 60_[+2]_12 chrI:9797932-9798012 0.00048 20_[+2]_52 chrI:9796771-9796851 0.00048 52_[+2]_20 chrV:14930246-14930326 0.00048 42_[+2]_30 chrX:2604796-2604876 0.00048 58_[+2]_14 chrIII:763228-763308 0.00053 17_[+2]_55 chrIII:10517063-10517143 0.00053 62_[+2]_10 chrI:14260643-14260723 0.00053 30_[+2]_42 chrV:12100934-12101014 0.00059 49_[+2]_23 chrI:8027954-8028034 0.00059 71_[+2]_1 chrII:8432566-8432646 0.00059 60_[+2]_12 chrIV:6954768-6954848 0.00059 60_[+2]_12 chrIV:11456284-11456364 0.00063 49_[+2]_23 chrI:12426827-12426907 0.00063 19_[+2]_53 chrIII:11332473-11332553 0.00063 13_[+2]_59 chrI:39765-39845 0.00078 55_[+2]_17 chrIV:12651711-12651791 0.00078 19_[+2]_53 chrX:11241598-11241678 0.00078 69_[+2]_3 chrV:9915117-9915197 0.00078 38_[+2]_34 chrV:12884209-12884289 0.00078 19_[+2]_53 chrII:9281803-9281883 0.0008 67_[+2]_5 chrX:8490018-8490098 0.00086 41_[+2]_31 chrV:5131569-5131649 0.00086 21_[+2]_51 chrIV:3520536-3520616 0.00086 69_[+2]_3 chrIV:6249723-6249803 0.00086 16_[+2]_56 chrV:20006804-20006884 0.00086 47_[+2]_25 chrX:2595374-2595454 0.0009 22_[+2]_50 chrI:10139971-10140051 0.0009 22_[+2]_50 chrIII:3899052-3899132 0.00092 13_[+2]_59 chrIV:1816276-1816356 0.001 70_[+2]_2 chrIII:7616304-7616384 0.0011 58_[+2]_14 chrIV:5958653-5958733 0.0011 14_[+2]_58 chrI:9430687-9430767 0.0011 52_[+2]_20 chrX:7678607-7678687 0.0011 69_[+2]_3 chrX:13645055-13645135 0.0011 52_[+2]_20 chrIV:4357441-4357521 0.0014 65_[+2]_7 chrI:12175517-12175597 0.0014 58_[+2]_14 chrI:13391262-13391342 0.0014 8_[+2]_64 chrIII:13381858-13381938 0.0014 33_[+2]_39 chrI:8938794-8938874 0.0016 48_[+2]_24 chrI:9798451-9798531 0.0016 11_[+2]_61 chrIV:11788537-11788617 0.0016 68_[+2]_4 chrI:8195327-8195407 0.0016 9_[+2]_63 chrI:14899608-14899688 0.0018 57_[+2]_15 chrIII:10523224-10523304 0.0018 28_[+2]_44 chrX:16997363-16997443 0.0018 30_[+2]_42 chrIII:7580754-7580834 0.0018 39_[+2]_33 chrII:4807250-4807330 0.002 35_[+2]_37 chrIV:5519199-5519279 0.0021 32_[+2]_40 chrX:7285962-7286042 0.0022 20_[+2]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTTCTYT width=8 seqs=121 chrII:8661675-8661755 ( 57) CTTTCTCT 1 chrIV:6393444-6393524 ( 12) TTTTCTCT 1 chrI:4788579-4788659 ( 22) CTTTCTCT 1 chrII:5302036-5302116 ( 28) TTTTCTCT 1 chrI:9248857-9248937 ( 56) CTTTCTCT 1 chrIII:7781027-7781107 ( 33) TTTTCTCT 1 chrV:20876794-20876874 ( 65) CTTTCTCT 1 chrIV:11813661-11813741 ( 38) TTTTCTCT 1 chrI:6574170-6574250 ( 36) CTTTCTCT 1 chrIV:8608383-8608463 ( 70) TTTTCTCT 1 chrIII:8696833-8696913 ( 15) CTTTCTCT 1 chrV:15075050-15075130 ( 21) CTTTCTCT 1 chrIII:8878063-8878143 ( 34) TTTTCTCT 1 chrI:10839188-10839268 ( 73) TTTTCTCT 1 chrI:7430091-7430171 ( 66) TTTTCTCT 1 chrIII:1284760-1284840 ( 48) CTTTCTCT 1 chrIII:13058312-13058392 ( 11) TTTTCTCT 1 chrIV:5839322-5839402 ( 24) TTTTCTCT 1 chrIII:5990231-5990311 ( 33) TTTTCTCT 1 chrII:4267569-4267649 ( 30) CTTTCTCT 1 chrIV:5103486-5103566 ( 21) TTTTCTCT 1 chrIII:10188076-10188156 ( 34) CTTTCTCT 1 chrIII:8255059-8255139 ( 52) CTTTCTCT 1 chrI:5540782-5540862 ( 11) CTTTCTCT 1 chrIII:6297768-6297848 ( 36) TTTTCTCT 1 chrX:10081225-10081305 ( 16) TTTTCTCT 1 chrX:13768697-13768777 ( 44) CTTTCTCC 1 chrI:1540628-1540708 ( 20) CTTTCTCC 1 chrIV:16476264-16476344 ( 7) TTTTCTCC 1 chrIV:17285396-17285476 ( 48) TTTTCTCC 1 chrV:13683427-13683507 ( 38) TTTTCTCC 1 chrIV:6601405-6601485 ( 54) TCTTCTCT 1 chrIII:9542969-9543049 ( 47) TCTTCTCT 1 chrI:10327811-10327891 ( 10) CCTTCTCT 1 chrX:7964055-7964135 ( 60) TCTTCTCT 1 chrIV:4577005-4577085 ( 4) CCTTCTCC 1 chrV:19057755-19057835 ( 52) TCTTCTCC 1 chrIII:13271008-13271088 ( 7) CCTTCTCC 1 chrI:10045930-10046010 ( 57) CTCTCTCT 1 chrV:14143792-14143872 ( 68) TTTTCTTT 1 chrI:3785923-3786003 ( 56) TTTTCTTT 1 chrII:6808629-6808709 ( 19) TTTTCTTT 1 chrII:7380620-7380700 ( 48) TTTTCTTT 1 chrII:9680002-9680082 ( 63) TTTTCTTT 1 chrV:16760126-16760206 ( 63) CTCTCTCT 1 chrIII:13272926-13273006 ( 17) CTTTCTTT 1 chrII:2804377-2804457 ( 20) TTTTCTTT 1 chrI:6637372-6637452 ( 18) TTTTCTTT 1 chrI:8103101-8103181 ( 18) TTCTCTCT 1 chrV:8494375-8494455 ( 50) TTCTCTCT 1 chrI:8011464-8011544 ( 65) TTTTCTTT 1 chrX:13544554-13544634 ( 43) CTTTCTTT 1 chrI:9200276-9200356 ( 62) TTTTCTTT 1 chrII:9325068-9325148 ( 15) CTCTCTCT 1 chrIV:5054465-5054545 ( 16) CTTTCTTT 1 chrIV:13118911-13118991 ( 58) CTCTCTCT 1 chrIII:7552984-7553064 ( 45) CTCTCTCT 1 chrII:3960496-3960576 ( 62) CTCTCTCT 1 chrII:6129648-6129728 ( 32) TTTTCTTT 1 chrIII:3136120-3136200 ( 63) TTTTCTTC 1 chrV:7980530-7980610 ( 62) TTTTCTTC 1 chrIII:9033945-9034025 ( 45) TTTTCTTC 1 chrX:11464550-11464630 ( 33) CTTTCTTC 1 chrIII:10960167-10960247 ( 47) CTTTCTTC 1 chrI:7398870-7398950 ( 66) TTTTCTTC 1 chrI:11187241-11187321 ( 17) TTTTCTTC 1 chrX:4449873-4449953 ( 66) TTTTCTTC 1 chrV:10833021-10833101 ( 17) TTTTCTTC 1 chrX:5114923-5115003 ( 43) TCTTCTTT 1 chrIV:8144500-8144580 ( 20) TCTTCTTT 1 chrIII:6355478-6355558 ( 51) TCCTCTCT 1 chrV:4775307-4775387 ( 61) TCTTCTTT 1 chrI:9797932-9798012 ( 21) TCTTCTTT 1 chrI:9796771-9796851 ( 53) CCCTCTCT 1 chrV:14930246-14930326 ( 43) TCTTCTTT 1 chrX:2604796-2604876 ( 59) TCTTCTTT 1 chrIII:763228-763308 ( 18) CCTTCTTC 1 chrIII:10517063-10517143 ( 63) TCTTCTTC 1 chrI:14260643-14260723 ( 31) TCTTCTTC 1 chrV:12100934-12101014 ( 50) CTCTCTTT 1 chrI:8027954-8028034 ( 72) TTCTCTTT 1 chrII:8432566-8432646 ( 61) TTCTCTTT 1 chrIV:6954768-6954848 ( 61) TTCTCTTT 1 chrIV:11456284-11456364 ( 50) TTTTCCCT 1 chrI:12426827-12426907 ( 20) TTTTCCCT 1 chrIII:11332473-11332553 ( 14) CTTTCCCT 1 chrI:39765-39845 ( 56) TTTTTTCT 1 chrIV:12651711-12651791 ( 20) CTTTTTCT 1 chrX:11241598-11241678 ( 70) CTCTCTTC 1 chrV:9915117-9915197 ( 39) TTCTCTTC 1 chrV:12884209-12884289 ( 20) TTTTTTCT 1 chrII:9281803-9281883 ( 68) TTTTCCCC 1 chrX:8490018-8490098 ( 42) TTTTTTCC 1 chrV:5131569-5131649 ( 22) TTTTTTCC 1 chrIV:3520536-3520616 ( 70) TTTTTTCC 1 chrIV:6249723-6249803 ( 17) TTTTTTCC 1 chrV:20006804-20006884 ( 48) CTTTTTCC 1 chrX:2595374-2595454 ( 23) TCCTCTTT 1 chrI:10139971-10140051 ( 23) TCCTCTTT 1 chrIII:3899052-3899132 ( 14) TCTTCCCT 1 chrIV:1816276-1816356 ( 71) CCTTTTCT 1 chrIII:7616304-7616384 ( 59) CCTTTTCC 1 chrIV:5958653-5958733 ( 15) CTCTCCCT 1 chrI:9430687-9430767 ( 53) CCTTTTCC 1 chrX:7678607-7678687 ( 70) CCTTTTCC 1 chrX:13645055-13645135 ( 53) TCTTTTCC 1 chrIV:4357441-4357521 ( 66) TTTTTTTT 1 chrI:12175517-12175597 ( 59) TTTTTTTT 1 chrI:13391262-13391342 ( 9) TTTTTTTT 1 chrIII:13381858-13381938 ( 34) CTTTTTTT 1 chrI:8938794-8938874 ( 49) CTTTTTTC 1 chrI:9798451-9798531 ( 12) TTTTTTTC 1 chrIV:11788537-11788617 ( 69) CTTTTTTC 1 chrI:8195327-8195407 ( 10) TCCTCCCT 1 chrI:14899608-14899688 ( 58) TCTTTTTT 1 chrIII:10523224-10523304 ( 29) TCTTTTTT 1 chrX:16997363-16997443 ( 31) TCCTCCCC 1 chrIII:7580754-7580834 ( 40) CCTTCCTC 1 chrII:4807250-4807330 ( 36) TTCTTTTT 1 chrIV:5519199-5519279 ( 33) TTCTCCTC 1 chrX:7285962-7286042 ( 21) TTCTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.94323 E= 5.0e-025 -1356 93 -1356 99 -1356 42 -1356 121 -1356 5 -1356 132 -1356 -1356 -1356 164 -1356 207 -1356 -70 -1356 -121 -1356 151 -1356 158 -1356 42 -1356 75 -1356 108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 121 E= 5.0e-025 0.000000 0.363636 0.000000 0.636364 0.000000 0.256198 0.000000 0.743802 0.000000 0.198347 0.000000 0.801653 0.000000 0.000000 0.000000 1.000000 0.000000 0.801653 0.000000 0.198347 0.000000 0.082645 0.000000 0.917355 0.000000 0.570248 0.000000 0.429752 0.000000 0.322314 0.000000 0.677686 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTYT MEME-2 regular expression -------------------------------------------------------------------------------- [TC][TC]TTCT[CT][TC] -------------------------------------------------------------------------------- Time 8.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKCGMAA MEME-3 width = 8 sites = 30 llr = 263 E-value = 7.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::6a8 pos.-specific C ::1a:4:: probability G ::5:a::2 matrix T aa4::::: bits 2.4 ** 2.2 ** 2.0 ** 1.7 * ** * Relative 1.5 ** ** * Entropy 1.2 ** ** ** (12.7 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGCGAAA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14478336-14478416 7 1.87e-05 CTCATA TTGCGAAA CACATCTCAA chrIII:4658552-4658632 50 1.87e-05 ACCAAAAACA TTGCGAAA CATCTATGAC chrI:9248857-9248937 40 1.87e-05 TTTGGAAACG TTGCGAAA TTTTGCCTCT chrII:11578494-11578574 10 1.87e-05 CAAAGGCGA TTGCGAAA TCAAGTCATA chrIII:8490420-8490500 4 1.87e-05 AAA TTGCGAAA TTTTATAAAA chrV:5131569-5131649 12 1.87e-05 TGTCAGCAAA TTGCGAAA TCTTTTTTCC chrI:12426827-12426907 5 1.87e-05 AAAA TTGCGAAA TAATTCATTT chrII:9281803-9281883 58 1.87e-05 GAAAAGATGA TTGCGAAA TGTTTTCCCC chrII:8585288-8585368 53 1.87e-05 AGAAGAAGCA TTGCGAAA TGATTCTGAA chrIII:4204230-4204310 13 1.87e-05 TAATAGAAAA TTGCGAAA TTTCAGATAA chrII:14792612-14792692 30 1.87e-05 AAATAAAAGA TTGCGAAA TTCCTATGAT chrIV:6601405-6601485 1 6.31e-05 . TTTCGAAA TCAATGTTTC chrII:31715-31795 43 6.31e-05 ATTTTTTCGA TTTCGAAA TCGATTTCAA chrX:5817343-5817423 48 6.31e-05 AAGATAAATG TTTCGAAA CACTATTTTT chrIV:5839322-5839402 51 6.31e-05 ACCCTTTTCT TTTCGAAA ACTTTTGTTT chrIII:4035125-4035205 24 6.31e-05 AATTCTCACA TTTCGAAA TTTCGCAATA chrI:3785923-3786003 43 8.36e-05 ATTTCGAGAA TTTCGCAA TACTCTTTTC chrI:12920711-12920791 25 8.36e-05 CAGCGCTCAA TTTCGCAA TTTTCAAAGC chrIV:16476264-16476344 57 8.36e-05 GAGTATAACA TTTCGCAA TAAAGCGGAA chrIV:3520536-3520616 28 8.36e-05 CTCGAACCAA TTTCGCAA TTCTCCTACG chrI:13391262-13391342 27 8.36e-05 TCATCAGAAA TTTCGCAA TAGTAGGCGG chrIII:1284760-1284840 26 8.36e-05 ATTGCATATT TTTCGCAA AAGGTTGCGT chrI:10040543-10040623 66 9.50e-05 AAGTTGGGTT TTGCGAAG TTGAGTG chrIII:11332473-11332553 27 1.02e-04 TCCCTATTTT TTGCGCAG AAATTCGTCA chrIV:5103486-5103566 69 1.02e-04 atcAGGCATC TTGCGCAG AGAG chrI:8195327-8195407 57 1.35e-04 TTTGCCACAT TTTCGCAG TTTTTCAAAG chrV:20006804-20006884 13 1.35e-04 GTGAAACAAT TTTCGCAG AACAAAGTAT chrIV:6954768-6954848 4 1.54e-04 TTT TTCCGAAA AACTTTATTT chrV:13115022-13115102 46 1.66e-04 ACCAAAACGA TTCCGCAA CTATGAAATG chrIII:9985719-9985799 43 1.77e-04 AGTAATCCAT TGGCGAAA AATGACAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14478336-14478416 1.9e-05 6_[+3]_66 chrIII:4658552-4658632 1.9e-05 49_[+3]_23 chrI:9248857-9248937 1.9e-05 39_[+3]_33 chrII:11578494-11578574 1.9e-05 9_[+3]_63 chrIII:8490420-8490500 1.9e-05 3_[+3]_69 chrV:5131569-5131649 1.9e-05 11_[+3]_61 chrI:12426827-12426907 1.9e-05 4_[+3]_68 chrII:9281803-9281883 1.9e-05 57_[+3]_15 chrII:8585288-8585368 1.9e-05 52_[+3]_20 chrIII:4204230-4204310 1.9e-05 12_[+3]_60 chrII:14792612-14792692 1.9e-05 29_[+3]_43 chrIV:6601405-6601485 6.3e-05 [+3]_72 chrII:31715-31795 6.3e-05 42_[+3]_30 chrX:5817343-5817423 6.3e-05 47_[+3]_25 chrIV:5839322-5839402 6.3e-05 50_[+3]_22 chrIII:4035125-4035205 6.3e-05 23_[+3]_49 chrI:3785923-3786003 8.4e-05 42_[+3]_30 chrI:12920711-12920791 8.4e-05 24_[+3]_48 chrIV:16476264-16476344 8.4e-05 56_[+3]_16 chrIV:3520536-3520616 8.4e-05 27_[+3]_45 chrI:13391262-13391342 8.4e-05 26_[+3]_46 chrIII:1284760-1284840 8.4e-05 25_[+3]_47 chrI:10040543-10040623 9.5e-05 65_[+3]_7 chrIII:11332473-11332553 0.0001 26_[+3]_46 chrIV:5103486-5103566 0.0001 68_[+3]_4 chrI:8195327-8195407 0.00013 56_[+3]_16 chrV:20006804-20006884 0.00013 12_[+3]_60 chrIV:6954768-6954848 0.00015 3_[+3]_69 chrV:13115022-13115102 0.00017 45_[+3]_27 chrIII:9985719-9985799 0.00018 42_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKCGMAA width=8 seqs=30 chrX:14478336-14478416 ( 7) TTGCGAAA 1 chrIII:4658552-4658632 ( 50) TTGCGAAA 1 chrI:9248857-9248937 ( 40) TTGCGAAA 1 chrII:11578494-11578574 ( 10) TTGCGAAA 1 chrIII:8490420-8490500 ( 4) TTGCGAAA 1 chrV:5131569-5131649 ( 12) TTGCGAAA 1 chrI:12426827-12426907 ( 5) TTGCGAAA 1 chrII:9281803-9281883 ( 58) TTGCGAAA 1 chrII:8585288-8585368 ( 53) TTGCGAAA 1 chrIII:4204230-4204310 ( 13) TTGCGAAA 1 chrII:14792612-14792692 ( 30) TTGCGAAA 1 chrIV:6601405-6601485 ( 1) TTTCGAAA 1 chrII:31715-31795 ( 43) TTTCGAAA 1 chrX:5817343-5817423 ( 48) TTTCGAAA 1 chrIV:5839322-5839402 ( 51) TTTCGAAA 1 chrIII:4035125-4035205 ( 24) TTTCGAAA 1 chrI:3785923-3786003 ( 43) TTTCGCAA 1 chrI:12920711-12920791 ( 25) TTTCGCAA 1 chrIV:16476264-16476344 ( 57) TTTCGCAA 1 chrIV:3520536-3520616 ( 28) TTTCGCAA 1 chrI:13391262-13391342 ( 27) TTTCGCAA 1 chrIII:1284760-1284840 ( 26) TTTCGCAA 1 chrI:10040543-10040623 ( 66) TTGCGAAG 1 chrIII:11332473-11332553 ( 27) TTGCGCAG 1 chrIV:5103486-5103566 ( 69) TTGCGCAG 1 chrI:8195327-8195407 ( 57) TTTCGCAG 1 chrV:20006804-20006884 ( 13) TTTCGCAG 1 chrIV:6954768-6954848 ( 4) TTCCGAAA 1 chrV:13115022-13115102 ( 46) TTCCGCAA 1 chrIII:9985719-9985799 ( 43) TGGCGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.92146 E= 7.3e-004 -1155 -1155 -1155 164 -1155 -1155 -247 159 -1155 -152 144 43 -1155 239 -1155 -1155 -1155 -1155 244 -1155 106 94 -1155 -1155 172 -1155 -1155 -1155 146 -1155 -15 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 7.3e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.033333 0.966667 0.000000 0.066667 0.500000 0.433333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.633333 0.366667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGMAA MEME-3 regular expression -------------------------------------------------------------------------------- TT[GT]CG[AC]AA -------------------------------------------------------------------------------- Time 12.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GWGRAGMV MEME-4 width = 8 sites = 32 llr = 267 E-value = 3.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGRAGMV MEME-4 Description -------------------------------------------------------------------------------- Simplified A :5:4a:53 pos.-specific C ::::::33 probability G a:a6:a:4 matrix T :5::::2: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 * * ** Relative 1.5 * * ** Entropy 1.2 * **** (12.0 bits) 1.0 * **** 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGGAGAG consensus T A CA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRAGMV MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3114879-3114959 27 9.83e-06 AGAAAATAGA GAGGAGAG AATAAGTATG chrIII:491238-491318 66 2.02e-05 ACACGTGCcg gtggagcg cgcttgc chrI:10185747-10185827 40 2.02e-05 AAAATATGCA GTGGAGCG CACTTAATGC chrX:11068520-11068600 27 2.02e-05 GGTGATGGAA GTGGAGAG CAATGGAGCA chrIV:11456284-11456364 7 2.02e-05 TATTGA GTGGAGAG TGTGAGTATG chrIII:5755366-5755446 62 3.04e-05 agGAAGAGAT GAGGAGAC GTCAAAAGAA chrX:859564-859644 10 5.72e-05 GCATGAATA GTGGAGAC ACAGACATAA chrI:11137586-11137666 66 5.72e-05 GTGAGAGAGT GTGGAGAC GCAGAGA chrV:10255252-10255332 54 5.72e-05 AAACTGATGG GTGGAGAC AAAATTTGGA chrI:11135798-11135878 61 5.72e-05 TGTGGAATTG GTGGAGAC GGAGACACTA chrV:13115022-13115102 27 5.72e-05 AGAGCCCGCG GAGGAGCA AACCAAAACG chrI:3096335-3096415 70 5.72e-05 gagagagagt gaggagca gag chrIII:7580754-7580834 4 5.72e-05 AGA GTGGAGAC GTAGAAAAGA chrIV:11785561-11785641 25 7.43e-05 GATGACGAGA GTGGAGCA TACTTGAAAC chrIII:13455981-13456061 9 7.43e-05 GAGAGAGA GTGGAGAA ACCTACTCTA chrIV:6393444-6393524 35 9.04e-05 TTTGgatgat gagaagag gatcatgatg chrIV:15259730-15259810 19 9.04e-05 TATTCTGTGG GAGAAGAG GAGATGCTGA chrIV:17285396-17285476 72 9.04e-05 ATAAGAAGAT GAGAAGCG A chrX:15027699-15027779 19 9.04e-05 AAAAAAAATC GAGAAGCG TTTTTGCTCG chrII:9667540-9667620 29 1.14e-04 GTTATTCCGA GAGGAGTG CACATACGAC chrX:13645055-13645135 30 1.14e-04 GGAATAGAAA GAGGAGTG GAGAAAAAAG chrII:31715-31795 10 1.21e-04 TGCGGGATA GTGGAGTG TCGTTGGGGG chrIV:11734259-11734339 60 1.21e-04 AATTCGAGTG GTGGAGTG CATCTCAACT chrX:5725028-5725108 72 1.37e-04 AAGAAAAGAA GAGAAGCC G chrIV:14260903-14260983 72 1.81e-04 GAAAAAATAT GTGAAGAC G chrIV:13272711-13272791 57 1.81e-04 AAAGCCCTGC GAGAAGCA TATAAAGAAA chrX:11241598-11241678 24 1.81e-04 aacagaaaaa gagaagca aaaaaggaaa chrX:16807213-16807293 65 1.81e-04 CTTGTAGAAT GAGAAGAA AGCTGATG chrII:8585288-8585368 42 1.81e-04 ACAAGATGTT GAGAAGAA GCATTGCGAA chrX:7322838-7322918 6 2.09e-04 CTGAT GTGAAGAA TGAGCAAAGA chrII:7885068-7885148 47 2.09e-04 CTCTTCTAAA GTGAAGAA ATTTCTTGAA chrV:965035-965115 24 2.33e-04 CCTTGTCCGA GAGGAGTA CACCACACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRAGMV MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3114879-3114959 9.8e-06 26_[+4]_46 chrIII:491238-491318 2e-05 65_[+4]_7 chrI:10185747-10185827 2e-05 39_[+4]_33 chrX:11068520-11068600 2e-05 26_[+4]_46 chrIV:11456284-11456364 2e-05 6_[+4]_66 chrIII:5755366-5755446 3e-05 61_[+4]_11 chrX:859564-859644 5.7e-05 9_[+4]_63 chrI:11137586-11137666 5.7e-05 65_[+4]_7 chrV:10255252-10255332 5.7e-05 53_[+4]_19 chrI:11135798-11135878 5.7e-05 60_[+4]_12 chrV:13115022-13115102 5.7e-05 26_[+4]_46 chrI:3096335-3096415 5.7e-05 69_[+4]_3 chrIII:7580754-7580834 5.7e-05 3_[+4]_69 chrIV:11785561-11785641 7.4e-05 24_[+4]_48 chrIII:13455981-13456061 7.4e-05 8_[+4]_64 chrIV:6393444-6393524 9e-05 34_[+4]_38 chrIV:15259730-15259810 9e-05 18_[+4]_54 chrIV:17285396-17285476 9e-05 71_[+4]_1 chrX:15027699-15027779 9e-05 18_[+4]_54 chrII:9667540-9667620 0.00011 28_[+4]_44 chrX:13645055-13645135 0.00011 29_[+4]_43 chrII:31715-31795 0.00012 9_[+4]_63 chrIV:11734259-11734339 0.00012 59_[+4]_13 chrX:5725028-5725108 0.00014 71_[+4]_1 chrIV:14260903-14260983 0.00018 71_[+4]_1 chrIV:13272711-13272791 0.00018 56_[+4]_16 chrX:11241598-11241678 0.00018 23_[+4]_49 chrX:16807213-16807293 0.00018 64_[+4]_8 chrII:8585288-8585368 0.00018 41_[+4]_31 chrX:7322838-7322918 0.00021 5_[+4]_67 chrII:7885068-7885148 0.00021 46_[+4]_26 chrV:965035-965115 0.00023 23_[+4]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRAGMV MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGRAGMV width=8 seqs=32 chrX:3114879-3114959 ( 27) GAGGAGAG 1 chrIII:491238-491318 ( 66) GTGGAGCG 1 chrI:10185747-10185827 ( 40) GTGGAGCG 1 chrX:11068520-11068600 ( 27) GTGGAGAG 1 chrIV:11456284-11456364 ( 7) GTGGAGAG 1 chrIII:5755366-5755446 ( 62) GAGGAGAC 1 chrX:859564-859644 ( 10) GTGGAGAC 1 chrI:11137586-11137666 ( 66) GTGGAGAC 1 chrV:10255252-10255332 ( 54) GTGGAGAC 1 chrI:11135798-11135878 ( 61) GTGGAGAC 1 chrV:13115022-13115102 ( 27) GAGGAGCA 1 chrI:3096335-3096415 ( 70) GAGGAGCA 1 chrIII:7580754-7580834 ( 4) GTGGAGAC 1 chrIV:11785561-11785641 ( 25) GTGGAGCA 1 chrIII:13455981-13456061 ( 9) GTGGAGAA 1 chrIV:6393444-6393524 ( 35) GAGAAGAG 1 chrIV:15259730-15259810 ( 19) GAGAAGAG 1 chrIV:17285396-17285476 ( 72) GAGAAGCG 1 chrX:15027699-15027779 ( 19) GAGAAGCG 1 chrII:9667540-9667620 ( 29) GAGGAGTG 1 chrX:13645055-13645135 ( 30) GAGGAGTG 1 chrII:31715-31795 ( 10) GTGGAGTG 1 chrIV:11734259-11734339 ( 60) GTGGAGTG 1 chrX:5725028-5725108 ( 72) GAGAAGCC 1 chrIV:14260903-14260983 ( 72) GTGAAGAC 1 chrIV:13272711-13272791 ( 57) GAGAAGCA 1 chrX:11241598-11241678 ( 24) GAGAAGCA 1 chrX:16807213-16807293 ( 65) GAGAAGAA 1 chrII:8585288-8585368 ( 42) GAGAAGAA 1 chrX:7322838-7322918 ( 6) GTGAAGAA 1 chrII:7885068-7885148 ( 47) GTGAAGAA 1 chrV:965035-965115 ( 24) GAGGAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRAGMV MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 3.3e+000 -1164 -1164 244 -1164 72 -1164 -1164 64 -1164 -1164 244 -1164 31 -1164 176 -1164 172 -1164 -1164 -1164 -1164 -1164 244 -1164 81 71 -1164 -104 18 39 114 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRAGMV MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.3e+000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.375000 0.000000 0.625000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.531250 0.312500 0.000000 0.156250 0.343750 0.250000 0.406250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGRAGMV MEME-4 regular expression -------------------------------------------------------------------------------- G[AT]G[GA]AG[AC][GAC] -------------------------------------------------------------------------------- Time 15.44 secs. ******************************************************************************** ******************************************************************************** MOTIF HGYYTCTC MEME-5 width = 8 sites = 26 llr = 223 E-value = 3.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif HGYYTCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C 3:45:a:a probability G :9:::::: matrix T 4165a:a: bits 2.4 * * 2.2 * * 2.0 * * * 1.7 * **** Relative 1.5 * **** Entropy 1.2 * **** (12.4 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TGTCTCTC consensus C CT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYTCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11068520-11068600 45 4.85e-06 CAATGGAGCA CGCCTCTC GCCCCCGGGC chrX:16997363-16997443 64 2.11e-05 GCATGGCATT TGCCTCTC TCGATTTCA chrII:7380620-7380700 58 2.11e-05 TTTTCTTTGA CGTCTCTC GACGTTTTCT chrV:4775307-4775387 51 2.11e-05 TCGAAAATGC CGTCTCTC ACTCTTCTTT chrI:9430687-9430767 3 2.11e-05 TT CGTCTCTC GCTGCTCATC chrIV:6954768-6954848 31 2.11e-05 TTTATCTCTC CGTCTCTC TATTTTTCAT chrV:16760126-16760206 40 3.48e-05 ACGCTCACTT TGTCtctc tgtctccatc chrIII:10517063-10517143 27 3.48e-05 TTGCACAATC TGTCTCTC CACTTTTCGG chrIII:8395028-8395108 18 3.48e-05 CATTTCTCTA TGTCTCTC ATTATTACAC chrV:14007038-14007118 40 3.48e-05 TCAGCTTCTA TGTCTCTC ACTTATTTTA chrIV:8608383-8608463 55 5.07e-05 AACCTTCTAA AGCCTCTC CATGTTATTT chrIII:13348122-13348202 1 9.09e-05 . CGTTTCTC TGCGCGCGTC chrI:9248857-9248937 65 9.09e-05 TCTTTCTCTG CGTTTCTC TCGAGTTG chrIV:8144500-8144580 67 9.09e-05 GGGAATAAAT TGCTTCTC AAGAAT chrIV:8758759-8758839 38 9.09e-05 CACTCGCTCT CGTTTCTC TAAGTCTCTT chrII:9680002-9680082 36 9.09e-05 CTAATCACTA AGTCTCTC AAATTTCAAT chrV:7819080-7819160 40 9.09e-05 AGTCTTCGCT TGCTTCTC GAAAAACTTG chrX:11241598-11241678 59 9.09e-05 CGGGTCCGTA TGCTTCTC TTACTCTCTT chrII:6129648-6129728 53 9.09e-05 GATTGAAAGA TGCTTCTC ACTTTCCCCG chrX:859564-859644 31 1.27e-04 GACATAAGGG AGCTTCTC CGGCTTCTTT chrV:12161405-12161485 66 1.27e-04 GAAATTACAT AGCTTCTC ATCAAAT chrV:13757518-13757598 35 1.27e-04 ATAGCACACT AGCTTCTC AGAAACTCTC chrII:5305294-5305374 58 1.49e-04 GGACGTCGTC AGTTTCTC ATGCATCATC chrIV:17267645-17267725 43 1.49e-04 TAATCCCCAT AGTTTCTC GGTGTACTTC chrII:9325068-9325148 6 1.85e-04 ctcta ttcctctc tctctctctg chrV:20876794-20876874 4 2.09e-04 CGG TTTCTCTC ACTCATCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYTCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11068520-11068600 4.8e-06 44_[+5]_28 chrX:16997363-16997443 2.1e-05 63_[+5]_9 chrII:7380620-7380700 2.1e-05 57_[+5]_15 chrV:4775307-4775387 2.1e-05 50_[+5]_22 chrI:9430687-9430767 2.1e-05 2_[+5]_70 chrIV:6954768-6954848 2.1e-05 30_[+5]_42 chrV:16760126-16760206 3.5e-05 39_[+5]_33 chrIII:10517063-10517143 3.5e-05 26_[+5]_46 chrIII:8395028-8395108 3.5e-05 17_[+5]_55 chrV:14007038-14007118 3.5e-05 39_[+5]_33 chrIV:8608383-8608463 5.1e-05 54_[+5]_18 chrIII:13348122-13348202 9.1e-05 [+5]_72 chrI:9248857-9248937 9.1e-05 64_[+5]_8 chrIV:8144500-8144580 9.1e-05 66_[+5]_6 chrIV:8758759-8758839 9.1e-05 37_[+5]_35 chrII:9680002-9680082 9.1e-05 35_[+5]_37 chrV:7819080-7819160 9.1e-05 39_[+5]_33 chrX:11241598-11241678 9.1e-05 58_[+5]_14 chrII:6129648-6129728 9.1e-05 52_[+5]_20 chrX:859564-859644 0.00013 30_[+5]_42 chrV:12161405-12161485 0.00013 65_[+5]_7 chrV:13757518-13757598 0.00013 34_[+5]_38 chrII:5305294-5305374 0.00015 57_[+5]_15 chrIV:17267645-17267725 0.00015 42_[+5]_30 chrII:9325068-9325148 0.00019 5_[+5]_67 chrV:20876794-20876874 0.00021 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYTCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HGYYTCTC width=8 seqs=26 chrX:11068520-11068600 ( 45) CGCCTCTC 1 chrX:16997363-16997443 ( 64) TGCCTCTC 1 chrII:7380620-7380700 ( 58) CGTCTCTC 1 chrV:4775307-4775387 ( 51) CGTCTCTC 1 chrI:9430687-9430767 ( 3) CGTCTCTC 1 chrIV:6954768-6954848 ( 31) CGTCTCTC 1 chrV:16760126-16760206 ( 40) TGTCTCTC 1 chrIII:10517063-10517143 ( 27) TGTCTCTC 1 chrIII:8395028-8395108 ( 18) TGTCTCTC 1 chrV:14007038-14007118 ( 40) TGTCTCTC 1 chrIV:8608383-8608463 ( 55) AGCCTCTC 1 chrIII:13348122-13348202 ( 1) CGTTTCTC 1 chrI:9248857-9248937 ( 65) CGTTTCTC 1 chrIV:8144500-8144580 ( 67) TGCTTCTC 1 chrIV:8758759-8758839 ( 38) CGTTTCTC 1 chrII:9680002-9680082 ( 36) AGTCTCTC 1 chrV:7819080-7819160 ( 40) TGCTTCTC 1 chrX:11241598-11241678 ( 59) TGCTTCTC 1 chrII:6129648-6129728 ( 53) TGCTTCTC 1 chrX:859564-859644 ( 31) AGCTTCTC 1 chrV:12161405-12161485 ( 66) AGCTTCTC 1 chrV:13757518-13757598 ( 35) AGCTTCTC 1 chrII:5305294-5305374 ( 58) AGTTTCTC 1 chrIV:17267645-17267725 ( 43) AGTTTCTC 1 chrII:9325068-9325148 ( 6) TTCCTCTC 1 chrV:20876794-20876874 ( 4) TTTCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYTCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 3.9e+002 -17 69 -1134 40 -1134 -1134 232 -206 -1134 115 -1134 84 -1134 149 -1134 52 -1134 -1134 -1134 164 -1134 239 -1134 -1134 -1134 -1134 -1134 164 -1134 239 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYTCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.9e+002 0.269231 0.307692 0.000000 0.423077 0.000000 0.000000 0.923077 0.076923 0.000000 0.423077 0.000000 0.576923 0.000000 0.538462 0.000000 0.461538 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGYYTCTC MEME-5 regular expression -------------------------------------------------------------------------------- [TCA]G[TC][CT]TCTC -------------------------------------------------------------------------------- Time 18.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:9985719-9985799 7.13e-02 80 chrV:10833021-10833101 5.55e-02 80 chrX:7964055-7964135 1.06e-03 80 chrIV:5519199-5519279 1.27e-01 80 chrIII:8880671-8880751 7.75e-02 80 chrX:4449873-4449953 1.67e-01 80 chrX:10081225-10081305 9.36e-03 15_[+2(6.37e-05)]_57 chrIII:5371680-5371760 5.57e-02 80 chrV:20006804-20006884 3.15e-03 80 chrII:6129648-6129728 3.29e-02 52_[+5(9.09e-05)]_20 chrI:7370255-7370335 9.92e-01 80 chrIII:7538212-7538292 1.88e-01 80 chrIII:5571213-5571293 2.03e-02 51_[+1(2.60e-05)]_21 chrV:12889339-12889419 1.61e-01 80 chrI:12170838-12170918 3.64e-01 80 chrX:17466819-17466899 1.00e-01 80 chrIII:3096253-3096333 3.43e-01 80 chrII:3960496-3960576 8.39e-03 80 chrIV:16531805-16531885 4.93e-01 80 chrII:14792612-14792692 1.16e-01 29_[+3(1.87e-05)]_43 chrX:11554822-11554902 7.44e-02 80 chrI:10327811-10327891 8.63e-04 80 chrII:12372669-12372749 4.12e-01 80 chrV:11274577-11274657 8.45e-01 80 chrV:13757518-13757598 2.94e-01 80 chrX:13645055-13645135 7.16e-04 34_[+4(7.43e-05)]_38 chrIV:6954768-6954848 9.37e-04 30_[+5(2.11e-05)]_42 chrIII:7552984-7553064 5.46e-03 80 chrIII:6297768-6297848 2.23e-03 35_[+2(6.37e-05)]_37 chrI:5540782-5540862 2.80e-02 10_[+2(6.37e-05)]_62 chrIII:8255059-8255139 3.01e-02 51_[+2(6.37e-05)]_21 chrII:7885068-7885148 3.49e-02 80 chrX:7285962-7286042 3.29e-01 80 chrIV:13118911-13118991 1.22e-01 80 chrIII:3899052-3899132 1.65e-02 80 chrIII:4088703-4088783 7.24e-03 80 chrII:5309246-5309326 9.41e-02 80 chrII:1340233-1340313 5.51e-01 80 chrIV:5054465-5054545 1.09e-01 80 chrIII:10188076-10188156 3.77e-02 33_[+2(6.37e-05)]_39 chrV:11850543-11850623 4.63e-01 80 chrIV:1816276-1816356 1.53e-02 80 chrIII:2438703-2438783 2.28e-01 80 chrX:2814461-2814541 5.18e-02 80 chrV:13683427-13683507 3.49e-02 80 chrV:12884209-12884289 1.68e-01 80 chrV:8751900-8751980 5.03e-01 80 chrX:2604796-2604876 9.76e-02 80 chrV:5862827-5862907 2.63e-01 80 chrI:14260643-14260723 1.35e-01 80 chrX:7322838-7322918 1.87e-01 80 chrV:9886424-9886504 3.27e-02 38_[+1(5.84e-05)]_34 chrI:8195327-8195407 5.20e-02 80 chrIV:6249723-6249803 3.28e-01 80 chrII:4576956-4577036 2.15e-01 80 chrV:14930246-14930326 8.47e-02 80 chrIII:5755366-5755446 2.70e-03 [+1(9.87e-06)]_[+1(9.87e-06)]_\ [+1(9.87e-06)]_[+1(9.87e-06)]_[+1(9.87e-06)]_[+1(9.87e-06)]_13_\ [+4(3.04e-05)]_11 chrV:9915117-9915197 4.05e-02 80 chrII:9325068-9325148 2.71e-03 80 chrIII:11039389-11039469 7.35e-01 80 chrX:5763492-5763572 7.41e-02 80 chrV:12161405-12161485 2.48e-02 80 chrIV:5103486-5103566 6.84e-05 20_[+2(6.37e-05)]_52 chrIII:4204230-4204310 7.48e-02 12_[+3(1.87e-05)]_60 chrIII:9542969-9543049 2.81e-02 80 chrI:9200276-9200356 2.74e-02 80 chrII:4267569-4267649 3.26e-05 29_[+2(6.37e-05)]_43 chrX:9705763-9705843 4.66e-01 80 chrIII:10523224-10523304 5.54e-02 80 chrII:4807250-4807330 3.20e-02 80 chrIII:4035125-4035205 5.37e-02 23_[+3(6.31e-05)]_[+3(8.36e-05)]_41 chrX:13544554-13544634 9.86e-02 80 chrII:6705767-6705847 7.80e-01 80 chrII:8585288-8585368 2.16e-03 52_[+3(1.87e-05)]_20 chrX:7678607-7678687 1.40e-01 80 chrII:8432566-8432646 3.68e-02 80 chrX:15027699-15027779 6.95e-03 18_[+4(9.04e-05)]_54 chrX:5130947-5131027 7.50e-01 80 chrV:14007038-14007118 2.57e-02 39_[+5(3.48e-05)]_33 chrV:10263825-10263905 1.50e-02 80 chrIII:11332473-11332553 2.64e-02 80 chrI:9494652-9494732 1.10e-01 80 chrIV:9932227-9932307 9.08e-01 80 chrIII:5990231-5990311 2.65e-03 32_[+2(6.37e-05)]_40 chrIV:17285396-17285476 3.91e-03 71_[+4(9.04e-05)]_1 chrX:5725028-5725108 1.08e-02 53_[+1(2.60e-05)]_19 chrI:11839651-11839731 6.80e-02 80 chrI:8011464-8011544 1.98e-01 80 chrIII:13271008-13271088 1.82e-02 80 chrII:5276856-5276936 1.75e-02 80 chrI:5319360-5319440 4.88e-01 80 chrIV:5839322-5839402 8.32e-04 23_[+2(6.37e-05)]_19_[+3(6.31e-05)]_\ 22 chrX:16807213-16807293 1.57e-01 80 chrX:16778135-16778215 1.52e-01 80 chrIII:13058312-13058392 1.10e-03 10_[+2(6.37e-05)]_62 chrII:6117201-6117281 9.54e-01 80 chrIII:7580754-7580834 3.82e-03 3_[+4(5.72e-05)]_69 chrIV:11788537-11788617 3.95e-01 80 chrI:3096335-3096415 3.89e-03 17_[+1(9.87e-06)]_[+1(9.87e-06)]_\ [+1(9.87e-06)]_[+1(9.87e-06)]_[+1(9.87e-06)]_[+1(9.87e-06)]_4_\ [+4(5.72e-05)]_3 chrIII:13455981-13456061 2.04e-04 [+1(9.87e-06)]_[+4(7.43e-05)]_64 chrV:13115022-13115102 2.23e-02 26_[+4(5.72e-05)]_46 chrX:13493908-13493988 5.07e-02 27_[+4(5.72e-05)]_45 chrV:8494375-8494455 1.22e-01 80 chrI:8103101-8103181 1.33e-01 80 chrI:11187241-11187321 4.46e-02 80 chrV:7726356-7726436 4.18e-01 80 chrIII:1284760-1284840 2.50e-03 25_[+3(8.36e-05)]_14_[+2(6.37e-05)]_\ 25 chrIII:13381858-13381938 1.31e-02 80 chrI:7430091-7430171 3.31e-02 65_[+2(6.37e-05)]_7 chrI:13391262-13391342 6.40e-05 26_[+3(8.36e-05)]_46 chrI:10866720-10866800 1.71e-01 80 chrI:10839188-10839268 3.30e-02 72_[+2(6.37e-05)] chrV:19057755-19057835 6.62e-02 80 chrII:9281803-9281883 4.44e-05 6_[+1(2.60e-05)]_27_[+1(9.87e-06)]_\ 8_[+3(1.87e-05)]_15 chrII:9207550-9207630 2.52e-02 80 chrI:9798451-9798531 5.23e-01 80 chrI:5537246-5537326 1.85e-01 80 chrI:9430687-9430767 4.40e-02 2_[+5(2.11e-05)]_70 chrIII:8878063-8878143 1.01e-02 33_[+2(6.37e-05)]_39 chrI:9796771-9796851 1.25e-01 80 chrX:5817343-5817423 5.69e-02 47_[+3(6.31e-05)]_25 chrX:11241598-11241678 2.91e-04 58_[+5(9.09e-05)]_14 chrI:9797932-9798012 5.25e-01 80 chrI:6637372-6637452 1.25e-01 80 chrI:10139971-10140051 3.48e-02 80 chrI:12426827-12426907 4.79e-03 4_[+3(1.87e-05)]_68 chrII:2804377-2804457 3.72e-02 80 chrIV:11734259-11734339 5.42e-02 80 chrI:8580249-8580329 7.75e-02 55_[+4(9.04e-05)]_17 chrV:7819080-7819160 3.31e-02 39_[+5(9.09e-05)]_33 chrIV:11456284-11456364 9.06e-03 6_[+4(2.02e-05)]_66 chrIV:3520536-3520616 1.50e-02 27_[+3(8.36e-05)]_45 chrI:12175517-12175597 3.08e-01 80 chrI:11135798-11135878 5.06e-03 60_[+4(5.72e-05)]_12 chrX:11068520-11068600 1.01e-04 26_[+4(2.02e-05)]_10_[+5(4.85e-06)]_\ 28 chrV:15075050-15075130 5.46e-05 20_[+2(6.37e-05)]_52 chrV:4775307-4775387 1.14e-03 50_[+5(2.11e-05)]_22 chrIV:16476264-16476344 9.40e-04 56_[+3(8.36e-05)]_16 chrV:5131569-5131649 5.91e-05 11_[+3(1.87e-05)]_61 chrIII:8490420-8490500 4.39e-02 3_[+3(1.87e-05)]_69 chrIV:12651711-12651791 8.79e-06 64_[+4(9.83e-06)]_8 chrI:8027954-8028034 1.10e-03 16_[+1(2.60e-05)]_56 chrIII:13272926-13273006 2.10e-02 80 chrIV:15259730-15259810 1.92e-02 18_[+4(9.04e-05)]_54 chrIII:8395028-8395108 3.55e-02 17_[+5(3.48e-05)]_55 chrIV:10650373-10650453 3.26e-01 80 chrV:16752551-16752631 7.11e-01 80 chrIV:13272711-13272791 3.23e-02 80 chrIV:5958653-5958733 5.70e-03 80 chrIII:7193431-7193511 3.48e-01 80 chrI:12920711-12920791 8.16e-02 24_[+3(8.36e-05)]_36_[+3(8.36e-05)]_\ 4 chrIII:10517063-10517143 8.69e-03 26_[+5(3.48e-05)]_46 chrV:16760126-16760206 1.96e-02 39_[+5(3.48e-05)]_33 chrIII:4191399-4191479 4.34e-03 80 chrIII:8696833-8696913 2.64e-02 14_[+2(6.37e-05)]_58 chrV:8215329-8215409 5.70e-03 8_[+1(4.22e-05)]_64 chrII:9680002-9680082 6.94e-03 35_[+5(9.09e-05)]_37 chrIV:8608383-8608463 2.15e-03 54_[+5(5.07e-05)]_7_[+2(6.37e-05)]_\ 3 chrIII:6355478-6355558 5.70e-02 80 chrIV:8758759-8758839 2.76e-02 37_[+5(9.09e-05)]_35 chrI:6574170-6574250 2.84e-02 35_[+2(6.37e-05)]_37 chrV:13231767-13231847 6.73e-01 80 chrI:8901555-8901635 2.68e-01 80 chrII:7380620-7380700 3.26e-03 57_[+5(2.11e-05)]_15 chrI:7396963-7397043 2.10e-01 80 chrII:31715-31795 3.12e-04 42_[+3(6.31e-05)]_30 chrIV:17267645-17267725 3.81e-01 80 chrV:10255252-10255332 8.87e-03 53_[+4(5.72e-05)]_19 chrII:9763750-9763830 8.18e-01 80 chrX:16997363-16997443 1.28e-02 63_[+5(2.11e-05)]_9 chrII:11599914-11599994 2.03e-01 80 chrIV:4357441-4357521 9.59e-02 80 chrX:15956370-15956450 4.50e-01 80 chrII:11578494-11578574 1.18e-01 9_[+3(1.87e-05)]_63 chrX:7257190-7257270 6.36e-02 80 chrIV:11813661-11813741 4.08e-03 44_[+5(3.48e-05)]_28 chrIV:11785561-11785641 7.03e-02 24_[+4(7.43e-05)]_48 chrV:20876794-20876874 2.92e-02 64_[+2(6.37e-05)]_8 chrII:6227149-6227229 3.56e-02 26_[+1(5.84e-05)]_46 chrI:1540628-1540708 5.21e-02 80 chrIII:1243381-1243461 2.13e-02 80 chrIV:14260903-14260983 2.19e-02 80 chrI:8938794-8938874 2.03e-01 80 chrIII:7781027-7781107 1.05e-03 32_[+2(6.37e-05)]_40 chrX:2595374-2595454 2.36e-01 80 chrIV:8283351-8283431 3.06e-01 80 chrII:5955968-5956048 1.44e-01 80 chrII:6808629-6808709 6.58e-04 53_[+1(5.84e-05)]_19 chrI:9852216-9852296 7.58e-04 18_[+1(9.87e-06)]_54 chrIV:8144500-8144580 3.35e-02 66_[+5(9.09e-05)]_6 chrI:7398870-7398950 4.87e-02 80 chrX:7873529-7873609 1.15e-01 80 chrIII:9270369-9270449 2.73e-02 80 chrIV:10461929-10462009 8.27e-01 80 chrX:12179985-12180065 7.09e-02 67_[+1(4.22e-05)]_5 chrI:10040543-10040623 1.84e-03 34_[+3(1.87e-05)]_23_[+3(9.50e-05)]_\ 7 chrX:12038895-12038975 5.90e-01 80 chrI:9248857-9248937 8.65e-05 39_[+3(1.87e-05)]_8_[+2(6.37e-05)]_\ 1_[+5(9.09e-05)]_8 chrIII:1905769-1905849 5.65e-01 80 chrIII:10960167-10960247 1.25e-01 80 chrI:5057023-5057103 2.19e-01 80 chrI:14899608-14899688 3.93e-03 14_[+1(4.22e-05)]_58 chrIII:763228-763308 6.49e-02 80 chrIII:5153293-5153373 5.57e-01 80 chrIII:4658552-4658632 2.29e-02 49_[+3(1.87e-05)]_23 chrX:13768697-13768777 1.54e-01 80 chrII:9667540-9667620 2.84e-02 80 chrX:11464550-11464630 1.07e-01 80 chrII:5302036-5302116 7.44e-04 27_[+2(6.37e-05)]_45 chrI:13320170-13320250 3.76e-01 80 chrIII:5760044-5760124 4.72e-01 80 chrIII:9033945-9034025 3.17e-01 80 chrI:3785923-3786003 1.64e-03 42_[+3(8.36e-05)]_30 chrI:3906333-3906413 1.21e-02 41_[+1(4.22e-05)]_31 chrI:11137586-11137666 7.61e-02 65_[+4(5.72e-05)]_7 chrX:5114923-5115003 6.06e-01 80 chrII:5305294-5305374 3.42e-01 80 chrV:7980530-7980610 1.87e-03 80 chrII:9209505-9209585 7.52e-01 80 chrV:14143792-14143872 4.02e-03 80 chrX:8490018-8490098 3.86e-02 80 chrIII:4219678-4219758 1.58e-01 80 chrII:6724060-6724140 4.97e-02 59_[+1(9.87e-06)]_13 chrII:9010804-9010884 2.25e-03 69_[+4(9.83e-06)]_3 chrII:15175284-15175364 7.26e-01 80 chrIII:764507-764587 3.57e-02 80 chrV:4966265-4966345 2.69e-01 80 chrX:3114879-3114959 1.21e-03 11_[+1(9.87e-06)]_7_[+4(9.83e-06)]_\ 46 chrX:5031827-5031907 1.37e-01 80 chrI:10185747-10185827 4.69e-02 39_[+4(2.02e-05)]_33 chrV:12100934-12101014 1.85e-03 80 chrI:4788579-4788659 2.16e-02 21_[+2(6.37e-05)]_51 chrIII:3136120-3136200 5.46e-02 80 chrIII:7616304-7616384 5.27e-01 80 chrX:859564-859644 1.15e-04 9_[+4(5.72e-05)]_63 chrIV:6601405-6601485 6.04e-04 [+3(6.31e-05)]_72 chrX:11134991-11135071 2.32e-02 80 chrIII:13348122-13348202 1.65e-01 [+5(9.09e-05)]_72 chrIV:6393444-6393524 6.60e-04 11_[+2(6.37e-05)]_15_[+4(9.04e-05)]_\ 38 chrX:14478336-14478416 1.07e-01 6_[+3(1.87e-05)]_66 chrV:6838765-6838845 6.44e-01 80 chrV:12184468-12184548 8.07e-01 80 chrV:965035-965115 2.20e-01 80 chrV:15469707-15469787 7.41e-01 80 chrIII:491238-491318 1.23e-02 65_[+4(2.02e-05)]_7 chrIV:4577005-4577085 3.38e-02 80 chrII:8661675-8661755 4.93e-03 56_[+2(6.37e-05)]_16 chrI:10045930-10046010 1.15e-01 80 chrI:39765-39845 1.38e-02 80 chrI:9707658-9707738 2.25e-02 44_[+1(4.22e-05)]_28 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n03.farnam.hpc.yale.internal ********************************************************************************