******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-42.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:11570117-11570197 1.0000 80 chrI:14838040-14838120 1.0000 80 chrV:8254072-8254152 1.0000 80 chrI:14257211-14257291 1.0000 80 chrX:13246825-13246905 1.0000 80 chrI:11655434-11655514 1.0000 80 chrII:354640-354720 1.0000 80 chrII:10021876-10021956 1.0000 80 chrIII:989728-989808 1.0000 80 chrI:277134-277214 1.0000 80 chrI:14594542-14594622 1.0000 80 chrIII:1131710-1131790 1.0000 80 chrIII:7253827-7253907 1.0000 80 chrV:13165410-13165490 1.0000 80 chrI:8262995-8263075 1.0000 80 chrX:6705343-6705423 1.0000 80 chrX:7679999-7680079 1.0000 80 chrIII:1731967-1732047 1.0000 80 chrIII:9867495-9867575 1.0000 80 chrIV:17233697-17233777 1.0000 80 chrV:9157773-9157853 1.0000 80 chrX:3901521-3901601 1.0000 80 chrI:14941723-14941803 1.0000 80 chrX:8770461-8770541 1.0000 80 chrIV:7542765-7542845 1.0000 80 chrX:13876063-13876143 1.0000 80 chrI:14279279-14279359 1.0000 80 chrIII:4132333-4132413 1.0000 80 chrX:12549208-12549288 1.0000 80 chrII:8152863-8152943 1.0000 80 chrI:10283704-10283784 1.0000 80 chrV:8716321-8716401 1.0000 80 chrIII:8744157-8744237 1.0000 80 chrIV:72932-73012 1.0000 80 chrX:12479174-12479254 1.0000 80 chrX:3181495-3181575 1.0000 80 chrI:10389770-10389850 1.0000 80 chrIII:10583650-10583730 1.0000 80 chrII:14098479-14098559 1.0000 80 chrIV:11431618-11431698 1.0000 80 chrIII:4028215-4028295 1.0000 80 chrV:11337028-11337108 1.0000 80 chrIV:6363779-6363859 1.0000 80 chrI:4930355-4930435 1.0000 80 chrX:3051460-3051540 1.0000 80 chrII:7795470-7795550 1.0000 80 chrV:3452671-3452751 1.0000 80 chrIV:1212528-1212608 1.0000 80 chrV:13681591-13681671 1.0000 80 chrX:16962813-16962893 1.0000 80 chrIII:3224244-3224324 1.0000 80 chrX:17352251-17352331 1.0000 80 chrII:9107546-9107626 1.0000 80 chrII:10753833-10753913 1.0000 80 chrI:3426008-3426088 1.0000 80 chrII:6116844-6116924 1.0000 80 chrIV:6177554-6177634 1.0000 80 chrI:7368445-7368525 1.0000 80 chrV:10816980-10817060 1.0000 80 chrIV:5533712-5533792 1.0000 80 chrI:7418056-7418136 1.0000 80 chrX:3619001-3619081 1.0000 80 chrX:15128314-15128394 1.0000 80 chrX:9373834-9373914 1.0000 80 chrIII:13123641-13123721 1.0000 80 chrX:9805596-9805676 1.0000 80 chrIII:12130904-12130984 1.0000 80 chrX:11328878-11328958 1.0000 80 chrIII:2686796-2686876 1.0000 80 chrV:12210094-12210174 1.0000 80 chrII:4291969-4292049 1.0000 80 chrIV:2537908-2537988 1.0000 80 chrIII:8737541-8737621 1.0000 80 chrX:305235-305315 1.0000 80 chrI:9768728-9768808 1.0000 80 chrIV:6055015-6055095 1.0000 80 chrX:4424420-4424500 1.0000 80 chrIV:11723436-11723516 1.0000 80 chrV:12701770-12701850 1.0000 80 chrIV:12419472-12419552 1.0000 80 chrIV:16812260-16812340 1.0000 80 chrI:801428-801508 1.0000 80 chrIII:11333194-11333274 1.0000 80 chrIV:9655714-9655794 1.0000 80 chrX:10151099-10151179 1.0000 80 chrX:3875877-3875957 1.0000 80 chrI:794393-794473 1.0000 80 chrI:7885972-7886052 1.0000 80 chrII:12711678-12711758 1.0000 80 chrV:10721487-10721567 1.0000 80 chrII:14470208-14470288 1.0000 80 chrIII:8877184-8877264 1.0000 80 chrII:10060648-10060728 1.0000 80 chrX:16817022-16817102 1.0000 80 chrI:11671485-11671565 1.0000 80 chrIV:14960204-14960284 1.0000 80 chrIV:11717634-11717714 1.0000 80 chrV:14854436-14854516 1.0000 80 chrII:6493292-6493372 1.0000 80 chrV:9483876-9483956 1.0000 80 chrX:9803794-9803874 1.0000 80 chrI:4222504-4222584 1.0000 80 chrII:7594416-7594496 1.0000 80 chrV:12747983-12748063 1.0000 80 chrIV:10574623-10574703 1.0000 80 chrV:1252987-1253067 1.0000 80 chrIII:4967389-4967469 1.0000 80 chrX:15552179-15552259 1.0000 80 chrIII:3414580-3414660 1.0000 80 chrI:4795903-4795983 1.0000 80 chrII:14938524-14938604 1.0000 80 chrIII:2391863-2391943 1.0000 80 chrI:14831290-14831370 1.0000 80 chrIV:4005298-4005378 1.0000 80 chrX:2451292-2451372 1.0000 80 chrIV:10191710-10191790 1.0000 80 chrIV:4505265-4505345 1.0000 80 chrV:16749607-16749687 1.0000 80 chrI:9055006-9055086 1.0000 80 chrX:4623956-4624036 1.0000 80 chrIV:7605562-7605642 1.0000 80 chrII:4574846-4574926 1.0000 80 chrX:13631457-13631537 1.0000 80 chrV:7873122-7873202 1.0000 80 chrV:20220757-20220837 1.0000 80 chrI:798775-798855 1.0000 80 chrX:14694766-14694846 1.0000 80 chrIV:563577-563657 1.0000 80 chrIII:9886604-9886684 1.0000 80 chrIV:9660112-9660192 1.0000 80 chrIV:3667944-3668024 1.0000 80 chrIII:612054-612134 1.0000 80 chrI:5971964-5972044 1.0000 80 chrV:12901452-12901532 1.0000 80 chrII:8588607-8588687 1.0000 80 chrV:7816672-7816752 1.0000 80 chrX:5869762-5869842 1.0000 80 chrIV:962019-962099 1.0000 80 chrIV:5139354-5139434 1.0000 80 chrX:6963956-6964036 1.0000 80 chrV:7110519-7110599 1.0000 80 chrII:8551254-8551334 1.0000 80 chrX:6419283-6419363 1.0000 80 chrII:7991419-7991499 1.0000 80 chrV:1223733-1223813 1.0000 80 chrX:6691804-6691884 1.0000 80 chrIII:2552538-2552618 1.0000 80 chrX:9361235-9361315 1.0000 80 chrX:2727814-2727894 1.0000 80 chrIV:6366210-6366290 1.0000 80 chrX:15321966-15322046 1.0000 80 chrX:1185651-1185731 1.0000 80 chrV:20652065-20652145 1.0000 80 chrX:5131929-5132009 1.0000 80 chrIV:2173076-2173156 1.0000 80 chrII:12067618-12067698 1.0000 80 chrV:10680140-10680220 1.0000 80 chrV:14140912-14140992 1.0000 80 chrIII:5402568-5402648 1.0000 80 chrIII:5902721-5902801 1.0000 80 chrIV:10500641-10500721 1.0000 80 chrII:10084647-10084727 1.0000 80 chrII:7559025-7559105 1.0000 80 chrV:1227929-1228009 1.0000 80 chrIII:3136774-3136854 1.0000 80 chrI:14189008-14189088 1.0000 80 chrX:13634273-13634353 1.0000 80 chrX:3429302-3429382 1.0000 80 chrII:11032969-11033049 1.0000 80 chrIII:340163-340243 1.0000 80 chrX:8308638-8308718 1.0000 80 chrII:12500146-12500226 1.0000 80 chrIII:11358433-11358513 1.0000 80 chrIV:12773681-12773761 1.0000 80 chrIII:10018172-10018252 1.0000 80 chrIII:11458084-11458164 1.0000 80 chrX:2522822-2522902 1.0000 80 chrI:14726020-14726100 1.0000 80 chrX:5129603-5129683 1.0000 80 chrV:294669-294749 1.0000 80 chrIV:16494121-16494201 1.0000 80 chrIV:5915332-5915412 1.0000 80 chrIV:8626404-8626484 1.0000 80 chrIV:10170985-10171065 1.0000 80 chrV:11342057-11342137 1.0000 80 chrII:11086925-11087005 1.0000 80 chrIV:5927946-5928026 1.0000 80 chrI:14835025-14835105 1.0000 80 chrII:10696200-10696280 1.0000 80 chrI:8507025-8507105 1.0000 80 chrIII:4103333-4103413 1.0000 80 chrIII:6647035-6647115 1.0000 80 chrI:2697189-2697269 1.0000 80 chrII:10971837-10971917 1.0000 80 chrII:10759163-10759243 1.0000 80 chrIII:13633987-13634067 1.0000 80 chrIII:612925-613005 1.0000 80 chrX:8648776-8648856 1.0000 80 chrIII:2914212-2914292 1.0000 80 chrIV:12762938-12763018 1.0000 80 chrX:15135121-15135201 1.0000 80 chrX:4089141-4089221 1.0000 80 chrI:4008891-4008971 1.0000 80 chrX:3634943-3635023 1.0000 80 chrX:4932168-4932248 1.0000 80 chrIV:3626637-3626717 1.0000 80 chrII:11353614-11353694 1.0000 80 chrII:10999284-10999364 1.0000 80 chrV:1150399-1150479 1.0000 80 chrI:11126458-11126538 1.0000 80 chrV:1313445-1313525 1.0000 80 chrV:11953784-11953864 1.0000 80 chrIII:6310554-6310634 1.0000 80 chrV:9911370-9911450 1.0000 80 chrX:14959839-14959919 1.0000 80 chrX:5723892-5723972 1.0000 80 chrX:8918952-8919032 1.0000 80 chrX:2926150-2926230 1.0000 80 chrIII:5139291-5139371 1.0000 80 chrIII:5992228-5992308 1.0000 80 chrX:15125600-15125680 1.0000 80 chrIV:4052432-4052512 1.0000 80 chrIII:3970560-3970640 1.0000 80 chrIII:3634322-3634402 1.0000 80 chrV:8555769-8555849 1.0000 80 chrIV:6065335-6065415 1.0000 80 chrIV:13220725-13220805 1.0000 80 chrII:8559353-8559433 1.0000 80 chrIV:8054114-8054194 1.0000 80 chrX:10594822-10594902 1.0000 80 chrI:2157280-2157360 1.0000 80 chrIV:951728-951808 1.0000 80 chrII:4584471-4584551 1.0000 80 chrV:20655317-20655397 1.0000 80 chrII:4129626-4129706 1.0000 80 chrII:73505-73585 1.0000 80 chrI:11656560-11656640 1.0000 80 chrIV:5109142-5109222 1.0000 80 chrIII:10512725-10512805 1.0000 80 chrII:11088290-11088370 1.0000 80 chrX:3987196-3987276 1.0000 80 chrII:163385-163465 1.0000 80 chrX:3202509-3202589 1.0000 80 chrX:2550724-2550804 1.0000 80 chrI:14725370-14725450 1.0000 80 chrX:2730014-2730094 1.0000 80 chrX:13201546-13201626 1.0000 80 chrX:5515593-5515673 1.0000 80 chrII:5947542-5947622 1.0000 80 chrX:15548049-15548129 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_unc-42/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-42.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.291 C 0.212 G 0.209 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.291 C 0.212 G 0.209 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATTSAATT MEME-1 width = 8 sites = 160 llr = 1124 E-value = 8.1e-097 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTSAATT MEME-1 Description -------------------------------------------------------------------------------- Simplified A a::28a:: pos.-specific C :134:::1 probability G ::132::1 matrix T :971::a9 bits 2.3 2.0 1.8 * ** 1.6 * ** Relative 1.4 ** ** Entropy 1.1 ** **** (10.1 bits) 0.9 *** **** 0.7 *** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel ATTCAATT consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTSAATT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5515593-5515673 54 3.54e-05 AACAATAGAA ATTCAATT GCAAAGGGGG chrII:163385-163465 9 3.54e-05 CCAATTCG ATTCAATT TCATGTATAC chrIV:5109142-5109222 61 3.54e-05 AACACGAAAG ATTCAATT TAAAATTGGA chrX:8918952-8919032 50 3.54e-05 GCGTCCTGTA ATTCAATT TAGTTTCCAG chrII:11353614-11353694 70 3.54e-05 GCCGAAACAG ATTCAATT TGT chrX:3634943-3635023 6 3.54e-05 GCGAA ATTCAATT AACTACGGCT chrI:4008891-4008971 20 3.54e-05 ATAAGAGTTG ATTCAATT GTGCCACCGT chrIII:612925-613005 26 3.54e-05 TGAGAAACAA ATTCAATT TGTTTGTCAC chrI:8507025-8507105 20 3.54e-05 GTCAATTGAG ATTCAATT TGATTAAGTA chrIV:12773681-12773761 53 3.54e-05 GCTCGTTTCA ATTCAATT TCAAGTCTCC chrIV:5139354-5139434 20 3.54e-05 GTTTTGGAAA ATTCAATT TCCCGACTTT chrII:4574846-4574926 44 3.54e-05 GCTCGGACAT ATTCAATT AGTCAGTCGA chrIV:11717634-11717714 44 3.54e-05 CACAGATTCG ATTCAATT TCGTTAATTC chrIV:14960204-14960284 38 3.54e-05 CCGCGCGCAA ATTCAATT TTTGCCTCCC chrII:10060648-10060728 67 3.54e-05 GCCCATGCAA ATTCAATT TAGCGG chrIV:9655714-9655794 31 3.54e-05 TATAATAATA ATTCAATT TGTTGGCCGA chrV:12701770-12701850 20 3.54e-05 AGCCCATCTA ATTCAATT TGTCTTGACA chrX:15128314-15128394 5 3.54e-05 TATC ATTCAATT TGAATGTGAC chrII:9107546-9107626 68 3.54e-05 GCGGATTCTG ATTCAATT ACTGC chrV:11337028-11337108 44 3.54e-05 TTCTAGGACA ATTCAATT TCGTTTTCGT chrIV:11431618-11431698 1 3.54e-05 . ATTCAATT CCTAGACGTC chrII:8152863-8152943 37 3.54e-05 TTTCCGCGAA ATTCAATT TCGTGGCCAT chrIV:7542765-7542845 43 3.54e-05 CTCCGAACGA ATTCAATT TAAAGAGTTT chrV:9157773-9157853 59 3.54e-05 GTTTTCAACA ATTCAATT GAAGTTCTAG chrIII:9867495-9867575 39 3.54e-05 AGGGCATACA ATTCAATT TCGTGACGGA chrV:13165410-13165490 20 3.54e-05 AAAGTAATCA ATTCAATT GAATATAAAC chrI:14838040-14838120 29 3.54e-05 CCCTTATTTT ATTCAATT TCAAGAGACA chrIV:5927946-5928026 49 7.04e-05 TCAATTTCTA ATTGAATT TGGAAGAAGG chrII:12500146-12500226 42 7.04e-05 GTGGCGGGAA ATTGAATT TCGCCAGCAG chrX:3429302-3429382 23 7.04e-05 TGCAAAGACA ATTGAATT TCCACGAAAA chrV:1227929-1228009 41 7.04e-05 GAGGGGGCAA ATTGAATT GCGGATTGCA chrII:10084647-10084727 9 7.04e-05 CCATTTTT ATTGAATT GTACACAAAT chrV:10680140-10680220 21 7.04e-05 GATTCAATAA ATTGAATT CGAGACCCTC chrX:15321966-15322046 20 7.04e-05 TACTCATTTA ATTGAATT ATAGCATCTC chrX:2727814-2727894 11 7.04e-05 AGTTGTACTG ATTGAATT GTTGGTGGTG chrIII:2552538-2552618 52 7.04e-05 TTTCTTGCAA ATTGAATT TACATGTATG chrV:7816672-7816752 17 7.04e-05 GGACCATCAA ATTGAATT AGAAGGGTCA chrII:8588607-8588687 19 7.04e-05 GAGAATTTAG ATTGAATT ACCATCTGTT chrI:5971964-5972044 31 7.04e-05 GCTTTCATAA ATTGAATT TGTATACACT chrIII:612054-612134 13 7.04e-05 CATTTGCCTA ATTGAATT GTCTCGGAGC chrIV:4505265-4505345 69 7.04e-05 GCGCGCGCAA ATTGAATT TGTT chrX:2451292-2451372 2 7.04e-05 G ATTGAATT TGATAGGTTC chrII:7594416-7594496 37 7.04e-05 CACCATCGAA ATTGAATT TCTCAAGAAC chrIV:6055015-6055095 42 7.04e-05 AAAAACCAAA ATTGAATT TGTGTGCACT chrI:9768728-9768808 19 7.04e-05 AACACTTTAA ATTGAATT CCCCTTCCCG chrIV:2537908-2537988 29 7.04e-05 CTCCTTGACA ATTGAATT TTCGATAACT chrII:7795470-7795550 29 7.04e-05 AGACTCTGAA ATTGAATT GTGTGTCGAA chrI:8262995-8263075 28 7.04e-05 AAGAATCCTA ATTGAATT TTACGAACAA chrI:11655434-11655514 28 7.04e-05 aatgaaataa attgaaTT TCGTAGAATG chrII:73505-73585 40 9.66e-05 AGTTGCTAAA ATCCAATT TGTCGGCTCG chrII:4584471-4584551 44 9.66e-05 ACGAGTGCTA ATCCAATT TATCCTTTGG chrI:14189008-14189088 21 9.66e-05 ACACCGGATA ATCCAATT GTCGTTTTCT chrI:4795903-4795983 8 9.66e-05 TGTATAA ATCCAATT TGTAGGCGAC chrIV:10574623-10574703 39 9.66e-05 ACAAACGATC ATCCAATT TCATTTGACC chrX:11328878-11328958 65 9.66e-05 ATGCACACTA ATCCAATT TTTTGTCT chrI:7418056-7418136 39 9.66e-05 TTGTCTCCAA ATCCAATT TGCTTTCCGA chrII:14098479-14098559 58 9.66e-05 TGGCGATAAA ATCCAATT TTGTCTTCCT chrIII:3970560-3970640 25 1.22e-04 CGAGTCACAA ATCGAATT AGCACTCCTC chrV:9911370-9911450 9 1.22e-04 AATCAAAA ATCGAATT ATATCTGTtg chrIV:10170985-10171065 8 1.22e-04 AGGGTCA ATCGAATT TGTTCCGAAG chrIII:11458084-11458164 29 1.22e-04 GGGAGCACTA ATCGAATT TGGCAGAAAA chrV:14140912-14140992 35 1.22e-04 ACGTTCAGAA ATCGAATT GTTCTGTAAG chrV:7873122-7873202 49 1.22e-04 GCGTGGCGCA ATCGAATT ATGGTAGTGT chrI:4222504-4222584 49 1.22e-04 GAGCCGCTAA ATCGAATT Tgaaaaagat chrX:3875877-3875957 14 1.22e-04 AACAGCTTGA ATCGAATT ATCTCGAGAT chrX:3901521-3901601 57 1.22e-04 GGAGCAGCAA ATCGAATT TCTCCAGATA chrIII:1131710-1131790 71 1.22e-04 GGGCCCCGTA ATCGAATT GT chrI:14594542-14594622 70 1.22e-04 GCGCGCGAAA ATCGAATT AGA chrII:4129626-4129706 46 1.71e-04 GATGCAAGAA ATTAAATT AGATGCTCTG chrIII:340163-340243 33 1.71e-04 TTCTTCGTAA ATTAAATT TGCAGTCGTT chrX:5131929-5132009 3 1.71e-04 AA ATTAAATT TGACGTCTTT chrI:11671485-11671565 32 1.71e-04 ACGGCGCTTA ATTAAATT AATGAAGTCT chrII:12711678-12711758 53 1.71e-04 TCGTGTTTTA ATTAAATT CCGGAGGGTC chrIII:8737541-8737621 60 1.71e-04 CAGCGCGAAA ATTAAATT GTTTTGTCAT chrX:17352251-17352331 67 1.71e-04 CTTGTGCTTT ATTAAATT ACCTAC chrII:10759163-10759243 56 1.96e-04 AATGCACTAA ATTCGATT TACGGGTTCC chrIII:10018172-10018252 21 1.96e-04 GAATGTTCAA ATTCGATT AAGTCTCTCT chrIV:10500641-10500721 31 1.96e-04 AACACTACAA ATTCGATT TGTGTCTCTA chrIII:3414580-3414660 3 1.96e-04 AA ATTCGATT CTCATACTAA chrV:10816980-10817060 21 1.96e-04 CATCCGCAAA ATTCGATT TGCAGTTCAA chrX:2730014-2730094 50 2.70e-04 ATGAAAGAAA ATTTAATT AGACGGAGTC chrV:20655317-20655397 30 2.70e-04 CCGGGTGCCA ATTGGATT TACCCGACAA chrII:10696200-10696280 68 2.70e-04 TTTGAGTCTC ATTTAATT AAGAA chrX:5129603-5129683 68 2.70e-04 TTTAAGGGGG ATTTAATT TTCTG chrIII:9886604-9886684 11 2.70e-04 GCACAAGTTG ATTTAATT AGAAGAAAGC chrX:9805596-9805676 13 2.70e-04 CAAGATTCAA ATTTAATT TGTCCCTTTC chrIV:6177554-6177634 23 2.70e-04 CTGTTGCTCA ATTTAATT ATACGGGGGC chrIV:72932-73012 22 2.70e-04 ACCGAACAAA ATTTAATT ATTTCACCGC chrIII:4132333-4132413 5 2.70e-04 GCAC ATTTAATT TCGTTAGCGG chrX:13246825-13246905 10 2.70e-04 AATGAGCTA ATTTAATT TCAAAAATTA chrII:5947542-5947622 64 3.06e-04 GTTTGATTAA ATCAAATT CGGATGGAC chrI:11656560-11656640 66 3.06e-04 GAGAGAGATT ATCAAATT ATTCCAT chrIV:8054114-8054194 15 3.06e-04 GACCATCGAA ATCAAATT ATATTATGCG chrII:8559353-8559433 69 3.06e-04 TCATTTATAA ATCAAATT TAGT chrIII:3634322-3634402 29 3.06e-04 TACACGCCTA ATCAAATT AGGCTAATCG chrV:1150399-1150479 8 3.06e-04 TGATTTG ATCAAATT TCGCGAGCAC chrX:13634273-13634353 31 3.06e-04 AGCCATTGTA ATCAAATT TTTGGAAGAG chrII:14938524-14938604 31 3.06e-04 GTTTCGAATA ATCAAATT CTGCAAATTT chrV:1252987-1253067 65 3.06e-04 ATGAGCCTGA ATCAAATT ATGATAAT chrX:9803794-9803874 26 3.06e-04 GATCAGCTTC ATCAAATT AGATTACGTG chrIV:12419472-12419552 15 3.06e-04 AAATTCAAAA ATCAAATT TCCGCGCCGC chrI:4930355-4930435 20 3.06e-04 ATGTCCTTCA ATCAAATT TCGGTCCCCT chrIII:4103333-4103413 16 3.50e-04 GCATACTCTA ACTCAATT ATGCGTTCGC chrIV:16494121-16494201 39 3.50e-04 GGTGTGGAAA ACTCAATT TCCGGGCATA chrIV:9660112-9660192 64 3.50e-04 GTCGTCCGTA ACTCAATT CAGACGTCG chrI:9055006-9055086 24 3.50e-04 AAGAGAAGTA ACTCAATT CTAGATGTAT chrV:12210094-12210174 4 3.50e-04 ATA ACTCAATT TTGTTGCCTC chrI:3426008-3426088 44 3.50e-04 CTCGACGCAA ACTCAATT TTCAGTGCGT chrV:8716321-8716401 72 3.50e-04 ACCGCTTCAA ACTCAATT T chrIII:1731967-1732047 58 3.50e-04 GAGCTCTTCA ATCCGATT TTCAAGTGTA chrX:7679999-7680079 8 3.50e-04 CTCAACA ACTCAATT GTAGGCTAGG chrX:15548049-15548129 31 4.56e-04 CAATTACCTA ATGCAATT TACTAGAGTG chrI:14726020-14726100 53 4.56e-04 gctgctgcCA ATCTAATT ATTTGTTCCC chrIV:6065335-6065415 32 5.17e-04 AAGGCACCAA ATTCAATC GCCTTTCATT chrX:5723892-5723972 46 5.17e-04 GGATGATTAT ATTAGATT ACCGAACACC chrIII:4967389-4967469 72 5.17e-04 CTATAAGATT ATTAGATT T chrIII:3224244-3224324 36 5.17e-04 ATTGGCTGTT ATTAGATT GCCCCTTGGG chrV:13681591-13681671 29 5.17e-04 GATGCTGAAA ATTAGATT TAGTCAAAAG chrIV:1212528-1212608 57 5.17e-04 AAGGGGGCTA ATTAGATT TGTTCTGTGT chrIII:8744157-8744237 39 5.17e-04 tctCCCCGTA ATTCAATC GAGTCGAGTC chrIV:4052432-4052512 8 5.68e-04 ACCGATA ATTCAATG CTACTACTCA chrX:1185651-1185731 52 5.68e-04 CGCATTGAAA ATGGAATT TGAGTGGAAA chrV:1223733-1223813 47 5.68e-04 aatattcatt attcaATG ATCTGCAAAT chrII:6493292-6493372 61 5.68e-04 AGGGACTAAT ATTCAATG TCATTGTCAA chrX:12479174-12479254 42 5.68e-04 CTCGTACATA ATTCAATG CCATAGTAAC chrII:11088290-11088370 71 5.94e-04 CGTGCCAATA ATTGAATC AT chrIII:6647035-6647115 29 5.94e-04 agcagTACAA ATTGAATC AGGCACATAG chrIII:5902721-5902801 28 5.94e-04 CCGGCGGCAA ATTGAATC AGCTCCAAAT chrX:10151099-10151179 34 5.94e-04 CGCTTTCCTA ATTGAATC AGTAGCTGGC chrIII:4028215-4028295 5 6.20e-04 TTGA ATTGAATG AGAAATGGAG chrII:7559025-7559105 4 6.74e-04 GAT ATTTGATT AGGTTTGCCA chrX:15552179-15552259 32 6.74e-04 GAGAACATGA ATTTGATT GTTCCGTTGT chrV:12747983-12748063 58 6.74e-04 TGAATAGAAA ATTTGATT TCGTGGGAAG chrX:305235-305315 9 6.74e-04 GTTTGGAA ATTTGATT TCTGCATGTT chrX:9373834-9373914 34 6.74e-04 TCTATGCGTG ATTTGATT GTAGGGCCGT chrII:10753833-10753913 51 6.74e-04 GAAGAAGAAA ATTTGATT TTATATTTTC chrI:14941723-14941803 2 6.74e-04 A ACCCAATT TAAATTTGAG chrIII:2914212-2914292 44 8.28e-04 CTCCGAGAGC ATTCTATT CAAACAGAAA chrIII:11333194-11333274 44 8.28e-04 TTTGTGGCTC ATTCTATT ATATATATGC chrI:10283704-10283784 22 8.28e-04 TTTTCCAACA ATTCTATT TATTTGCACC chrI:2157280-2157360 53 9.01e-04 CACTTCTCGA ACTCGATT ATGGGACGAA chrV:1313445-1313525 16 9.01e-04 AAGGAGTACA ATGAAATT AGGGGGCGAC chrX:6963956-6964036 55 9.01e-04 AATCGAAATA ATCGAATC AGGGAGTTGA chrV:3452671-3452751 45 9.01e-04 TGAAAAGATT ATGAAATT TGGGCGGAAT chrIV:6363779-6363859 41 9.01e-04 TTTGCACATC ATCGAATC TAACCGGGGT chrV:8254072-8254152 2 9.01e-04 T ATGAAATT AGACAGAGAA chrI:11126458-11126538 7 9.90e-04 AACGTA ATTGTATT AGGATCTTGT chrIV:8626404-8626484 18 9.90e-04 CTCTTTTTCT ATCGAATG ATATTAATTG chrII:14470208-14470288 23 9.90e-04 CCCAAGCCCA ATTGTATT ATCCCTCCTT chrII:11086925-11087005 18 1.12e-03 GAGCATTAAC ACTGGATT ACGTTGCACC chrIV:5915332-5915412 64 1.12e-03 GGGACGACAA ATGCGATT TGAGCTCTC chrII:7991419-7991499 4 1.12e-03 TTA ACTTAATT ATTAAGCCAA chrIV:10191710-10191790 30 1.12e-03 GATACAGGAA ATCTGATT TGTTCTTTCT chrII:11032969-11033049 62 1.21e-03 GCCTGCTAAA ATGGGATT ACTGTAATGA chrIII:13123641-13123721 45 1.21e-03 GAATAAGGAA ATGGGATT TGTTGTAGAA chrX:11570117-11570197 63 1.29e-03 AATAGTCATA ATTTAATC GTTCGCGAGT chrI:14831290-14831370 44 1.37e-03 GATGAGGCTA ATTGGATG TGTGTCATCA chrV:9483876-9483956 18 1.39e-03 TGTATGCATA ACCCGATT TGTCGCCTTT chrX:8308638-8308718 8 1.57e-03 TAACGTA ATCAAATG GGTTGGGTGC chrX:4089141-4089221 27 1.63e-03 AATCGTTTTA ACTCAATC CCAAGTCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTSAATT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5515593-5515673 3.5e-05 53_[+1]_19 chrII:163385-163465 3.5e-05 8_[+1]_64 chrIV:5109142-5109222 3.5e-05 60_[+1]_12 chrX:8918952-8919032 3.5e-05 49_[+1]_23 chrII:11353614-11353694 3.5e-05 69_[+1]_3 chrX:3634943-3635023 3.5e-05 5_[+1]_67 chrI:4008891-4008971 3.5e-05 19_[+1]_53 chrIII:612925-613005 3.5e-05 25_[+1]_47 chrI:8507025-8507105 3.5e-05 19_[+1]_53 chrIV:12773681-12773761 3.5e-05 52_[+1]_20 chrIV:5139354-5139434 3.5e-05 19_[+1]_53 chrII:4574846-4574926 3.5e-05 43_[+1]_29 chrIV:11717634-11717714 3.5e-05 43_[+1]_29 chrIV:14960204-14960284 3.5e-05 37_[+1]_35 chrII:10060648-10060728 3.5e-05 66_[+1]_6 chrIV:9655714-9655794 3.5e-05 30_[+1]_42 chrV:12701770-12701850 3.5e-05 19_[+1]_53 chrX:15128314-15128394 3.5e-05 4_[+1]_68 chrII:9107546-9107626 3.5e-05 67_[+1]_5 chrV:11337028-11337108 3.5e-05 43_[+1]_29 chrIV:11431618-11431698 3.5e-05 [+1]_72 chrII:8152863-8152943 3.5e-05 36_[+1]_36 chrIV:7542765-7542845 3.5e-05 42_[+1]_30 chrV:9157773-9157853 3.5e-05 58_[+1]_14 chrIII:9867495-9867575 3.5e-05 38_[+1]_34 chrV:13165410-13165490 3.5e-05 19_[+1]_53 chrI:14838040-14838120 3.5e-05 28_[+1]_44 chrIV:5927946-5928026 7e-05 48_[+1]_24 chrII:12500146-12500226 7e-05 41_[+1]_31 chrX:3429302-3429382 7e-05 22_[+1]_50 chrV:1227929-1228009 7e-05 40_[+1]_32 chrII:10084647-10084727 7e-05 8_[+1]_64 chrV:10680140-10680220 7e-05 20_[+1]_52 chrX:15321966-15322046 7e-05 19_[+1]_53 chrX:2727814-2727894 7e-05 10_[+1]_62 chrIII:2552538-2552618 7e-05 51_[+1]_21 chrV:7816672-7816752 7e-05 16_[+1]_56 chrII:8588607-8588687 7e-05 18_[+1]_54 chrI:5971964-5972044 7e-05 30_[+1]_42 chrIII:612054-612134 7e-05 12_[+1]_60 chrIV:4505265-4505345 7e-05 68_[+1]_4 chrX:2451292-2451372 7e-05 1_[+1]_71 chrII:7594416-7594496 7e-05 36_[+1]_36 chrIV:6055015-6055095 7e-05 41_[+1]_31 chrI:9768728-9768808 7e-05 18_[+1]_54 chrIV:2537908-2537988 7e-05 28_[+1]_44 chrII:7795470-7795550 7e-05 28_[+1]_44 chrI:8262995-8263075 7e-05 27_[+1]_45 chrI:11655434-11655514 7e-05 27_[+1]_45 chrII:73505-73585 9.7e-05 39_[+1]_33 chrII:4584471-4584551 9.7e-05 43_[+1]_29 chrI:14189008-14189088 9.7e-05 20_[+1]_52 chrI:4795903-4795983 9.7e-05 7_[+1]_65 chrIV:10574623-10574703 9.7e-05 38_[+1]_34 chrX:11328878-11328958 9.7e-05 64_[+1]_8 chrI:7418056-7418136 9.7e-05 38_[+1]_34 chrII:14098479-14098559 9.7e-05 57_[+1]_15 chrIII:3970560-3970640 0.00012 24_[+1]_48 chrV:9911370-9911450 0.00012 8_[+1]_64 chrIV:10170985-10171065 0.00012 7_[+1]_65 chrIII:11458084-11458164 0.00012 28_[+1]_44 chrV:14140912-14140992 0.00012 34_[+1]_38 chrV:7873122-7873202 0.00012 48_[+1]_24 chrI:4222504-4222584 0.00012 48_[+1]_24 chrX:3875877-3875957 0.00012 13_[+1]_59 chrX:3901521-3901601 0.00012 56_[+1]_16 chrIII:1131710-1131790 0.00012 70_[+1]_2 chrI:14594542-14594622 0.00012 69_[+1]_3 chrII:4129626-4129706 0.00017 45_[+1]_27 chrIII:340163-340243 0.00017 32_[+1]_40 chrX:5131929-5132009 0.00017 2_[+1]_70 chrI:11671485-11671565 0.00017 31_[+1]_41 chrII:12711678-12711758 0.00017 52_[+1]_20 chrIII:8737541-8737621 0.00017 59_[+1]_13 chrX:17352251-17352331 0.00017 66_[+1]_6 chrII:10759163-10759243 0.0002 55_[+1]_17 chrIII:10018172-10018252 0.0002 20_[+1]_52 chrIV:10500641-10500721 0.0002 30_[+1]_42 chrIII:3414580-3414660 0.0002 2_[+1]_70 chrV:10816980-10817060 0.0002 20_[+1]_52 chrX:2730014-2730094 0.00027 49_[+1]_23 chrV:20655317-20655397 0.00027 29_[+1]_43 chrII:10696200-10696280 0.00027 67_[+1]_5 chrX:5129603-5129683 0.00027 67_[+1]_5 chrIII:9886604-9886684 0.00027 10_[+1]_62 chrX:9805596-9805676 0.00027 12_[+1]_60 chrIV:6177554-6177634 0.00027 22_[+1]_50 chrIV:72932-73012 0.00027 21_[+1]_51 chrIII:4132333-4132413 0.00027 4_[+1]_68 chrX:13246825-13246905 0.00027 9_[+1]_63 chrII:5947542-5947622 0.00031 63_[+1]_9 chrI:11656560-11656640 0.00031 65_[+1]_7 chrIV:8054114-8054194 0.00031 14_[+1]_58 chrII:8559353-8559433 0.00031 68_[+1]_4 chrIII:3634322-3634402 0.00031 28_[+1]_44 chrV:1150399-1150479 0.00031 7_[+1]_65 chrX:13634273-13634353 0.00031 30_[+1]_42 chrII:14938524-14938604 0.00031 30_[+1]_42 chrV:1252987-1253067 0.00031 64_[+1]_8 chrX:9803794-9803874 0.00031 25_[+1]_47 chrIV:12419472-12419552 0.00031 14_[+1]_58 chrI:4930355-4930435 0.00031 19_[+1]_53 chrIII:4103333-4103413 0.00035 15_[+1]_57 chrIV:16494121-16494201 0.00035 38_[+1]_34 chrIV:9660112-9660192 0.00035 63_[+1]_9 chrI:9055006-9055086 0.00035 23_[+1]_49 chrV:12210094-12210174 0.00035 3_[+1]_69 chrI:3426008-3426088 0.00035 43_[+1]_29 chrV:8716321-8716401 0.00035 71_[+1]_1 chrIII:1731967-1732047 0.00035 57_[+1]_15 chrX:7679999-7680079 0.00035 7_[+1]_65 chrX:15548049-15548129 0.00046 30_[+1]_42 chrI:14726020-14726100 0.00046 52_[+1]_20 chrIV:6065335-6065415 0.00052 31_[+1]_41 chrX:5723892-5723972 0.00052 45_[+1]_27 chrIII:4967389-4967469 0.00052 71_[+1]_1 chrIII:3224244-3224324 0.00052 35_[+1]_37 chrV:13681591-13681671 0.00052 28_[+1]_44 chrIV:1212528-1212608 0.00052 56_[+1]_16 chrIII:8744157-8744237 0.00052 38_[+1]_34 chrIV:4052432-4052512 0.00057 7_[+1]_65 chrX:1185651-1185731 0.00057 51_[+1]_21 chrV:1223733-1223813 0.00057 46_[+1]_26 chrII:6493292-6493372 0.00057 60_[+1]_12 chrX:12479174-12479254 0.00057 41_[+1]_31 chrII:11088290-11088370 0.00059 70_[+1]_2 chrIII:6647035-6647115 0.00059 28_[+1]_44 chrIII:5902721-5902801 0.00059 27_[+1]_45 chrX:10151099-10151179 0.00059 33_[+1]_39 chrIII:4028215-4028295 0.00062 4_[+1]_68 chrII:7559025-7559105 0.00067 3_[+1]_69 chrX:15552179-15552259 0.00067 31_[+1]_41 chrV:12747983-12748063 0.00067 57_[+1]_15 chrX:305235-305315 0.00067 8_[+1]_64 chrX:9373834-9373914 0.00067 33_[+1]_39 chrII:10753833-10753913 0.00067 50_[+1]_22 chrI:14941723-14941803 0.00067 1_[+1]_71 chrIII:2914212-2914292 0.00083 43_[+1]_29 chrIII:11333194-11333274 0.00083 43_[+1]_29 chrI:10283704-10283784 0.00083 21_[+1]_51 chrI:2157280-2157360 0.0009 52_[+1]_20 chrV:1313445-1313525 0.0009 15_[+1]_57 chrX:6963956-6964036 0.0009 54_[+1]_18 chrV:3452671-3452751 0.0009 44_[+1]_28 chrIV:6363779-6363859 0.0009 40_[+1]_32 chrV:8254072-8254152 0.0009 1_[+1]_71 chrI:11126458-11126538 0.00099 6_[+1]_66 chrIV:8626404-8626484 0.00099 17_[+1]_55 chrII:14470208-14470288 0.00099 22_[+1]_50 chrII:11086925-11087005 0.0011 17_[+1]_55 chrIV:5915332-5915412 0.0011 63_[+1]_9 chrII:7991419-7991499 0.0011 3_[+1]_69 chrIV:10191710-10191790 0.0011 29_[+1]_43 chrII:11032969-11033049 0.0012 61_[+1]_11 chrIII:13123641-13123721 0.0012 44_[+1]_28 chrX:11570117-11570197 0.0013 62_[+1]_10 chrI:14831290-14831370 0.0014 43_[+1]_29 chrV:9483876-9483956 0.0014 17_[+1]_55 chrX:8308638-8308718 0.0016 7_[+1]_65 chrX:4089141-4089221 0.0016 26_[+1]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTSAATT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTSAATT width=8 seqs=160 chrX:5515593-5515673 ( 54) ATTCAATT 1 chrII:163385-163465 ( 9) ATTCAATT 1 chrIV:5109142-5109222 ( 61) ATTCAATT 1 chrX:8918952-8919032 ( 50) ATTCAATT 1 chrII:11353614-11353694 ( 70) ATTCAATT 1 chrX:3634943-3635023 ( 6) ATTCAATT 1 chrI:4008891-4008971 ( 20) ATTCAATT 1 chrIII:612925-613005 ( 26) ATTCAATT 1 chrI:8507025-8507105 ( 20) ATTCAATT 1 chrIV:12773681-12773761 ( 53) ATTCAATT 1 chrIV:5139354-5139434 ( 20) ATTCAATT 1 chrII:4574846-4574926 ( 44) ATTCAATT 1 chrIV:11717634-11717714 ( 44) ATTCAATT 1 chrIV:14960204-14960284 ( 38) ATTCAATT 1 chrII:10060648-10060728 ( 67) ATTCAATT 1 chrIV:9655714-9655794 ( 31) ATTCAATT 1 chrV:12701770-12701850 ( 20) ATTCAATT 1 chrX:15128314-15128394 ( 5) ATTCAATT 1 chrII:9107546-9107626 ( 68) ATTCAATT 1 chrV:11337028-11337108 ( 44) ATTCAATT 1 chrIV:11431618-11431698 ( 1) ATTCAATT 1 chrII:8152863-8152943 ( 37) ATTCAATT 1 chrIV:7542765-7542845 ( 43) ATTCAATT 1 chrV:9157773-9157853 ( 59) ATTCAATT 1 chrIII:9867495-9867575 ( 39) ATTCAATT 1 chrV:13165410-13165490 ( 20) ATTCAATT 1 chrI:14838040-14838120 ( 29) ATTCAATT 1 chrIV:5927946-5928026 ( 49) ATTGAATT 1 chrII:12500146-12500226 ( 42) ATTGAATT 1 chrX:3429302-3429382 ( 23) ATTGAATT 1 chrV:1227929-1228009 ( 41) ATTGAATT 1 chrII:10084647-10084727 ( 9) ATTGAATT 1 chrV:10680140-10680220 ( 21) ATTGAATT 1 chrX:15321966-15322046 ( 20) ATTGAATT 1 chrX:2727814-2727894 ( 11) ATTGAATT 1 chrIII:2552538-2552618 ( 52) ATTGAATT 1 chrV:7816672-7816752 ( 17) ATTGAATT 1 chrII:8588607-8588687 ( 19) ATTGAATT 1 chrI:5971964-5972044 ( 31) ATTGAATT 1 chrIII:612054-612134 ( 13) ATTGAATT 1 chrIV:4505265-4505345 ( 69) ATTGAATT 1 chrX:2451292-2451372 ( 2) ATTGAATT 1 chrII:7594416-7594496 ( 37) ATTGAATT 1 chrIV:6055015-6055095 ( 42) ATTGAATT 1 chrI:9768728-9768808 ( 19) ATTGAATT 1 chrIV:2537908-2537988 ( 29) ATTGAATT 1 chrII:7795470-7795550 ( 29) ATTGAATT 1 chrI:8262995-8263075 ( 28) ATTGAATT 1 chrI:11655434-11655514 ( 28) ATTGAATT 1 chrII:73505-73585 ( 40) ATCCAATT 1 chrII:4584471-4584551 ( 44) ATCCAATT 1 chrI:14189008-14189088 ( 21) ATCCAATT 1 chrI:4795903-4795983 ( 8) ATCCAATT 1 chrIV:10574623-10574703 ( 39) ATCCAATT 1 chrX:11328878-11328958 ( 65) ATCCAATT 1 chrI:7418056-7418136 ( 39) ATCCAATT 1 chrII:14098479-14098559 ( 58) ATCCAATT 1 chrIII:3970560-3970640 ( 25) ATCGAATT 1 chrV:9911370-9911450 ( 9) ATCGAATT 1 chrIV:10170985-10171065 ( 8) ATCGAATT 1 chrIII:11458084-11458164 ( 29) ATCGAATT 1 chrV:14140912-14140992 ( 35) ATCGAATT 1 chrV:7873122-7873202 ( 49) ATCGAATT 1 chrI:4222504-4222584 ( 49) ATCGAATT 1 chrX:3875877-3875957 ( 14) ATCGAATT 1 chrX:3901521-3901601 ( 57) ATCGAATT 1 chrIII:1131710-1131790 ( 71) ATCGAATT 1 chrI:14594542-14594622 ( 70) ATCGAATT 1 chrII:4129626-4129706 ( 46) ATTAAATT 1 chrIII:340163-340243 ( 33) ATTAAATT 1 chrX:5131929-5132009 ( 3) ATTAAATT 1 chrI:11671485-11671565 ( 32) ATTAAATT 1 chrII:12711678-12711758 ( 53) ATTAAATT 1 chrIII:8737541-8737621 ( 60) ATTAAATT 1 chrX:17352251-17352331 ( 67) ATTAAATT 1 chrII:10759163-10759243 ( 56) ATTCGATT 1 chrIII:10018172-10018252 ( 21) ATTCGATT 1 chrIV:10500641-10500721 ( 31) ATTCGATT 1 chrIII:3414580-3414660 ( 3) ATTCGATT 1 chrV:10816980-10817060 ( 21) ATTCGATT 1 chrX:2730014-2730094 ( 50) ATTTAATT 1 chrV:20655317-20655397 ( 30) ATTGGATT 1 chrII:10696200-10696280 ( 68) ATTTAATT 1 chrX:5129603-5129683 ( 68) ATTTAATT 1 chrIII:9886604-9886684 ( 11) ATTTAATT 1 chrX:9805596-9805676 ( 13) ATTTAATT 1 chrIV:6177554-6177634 ( 23) ATTTAATT 1 chrIV:72932-73012 ( 22) ATTTAATT 1 chrIII:4132333-4132413 ( 5) ATTTAATT 1 chrX:13246825-13246905 ( 10) ATTTAATT 1 chrII:5947542-5947622 ( 64) ATCAAATT 1 chrI:11656560-11656640 ( 66) ATCAAATT 1 chrIV:8054114-8054194 ( 15) ATCAAATT 1 chrII:8559353-8559433 ( 69) ATCAAATT 1 chrIII:3634322-3634402 ( 29) ATCAAATT 1 chrV:1150399-1150479 ( 8) ATCAAATT 1 chrX:13634273-13634353 ( 31) ATCAAATT 1 chrII:14938524-14938604 ( 31) ATCAAATT 1 chrV:1252987-1253067 ( 65) ATCAAATT 1 chrX:9803794-9803874 ( 26) ATCAAATT 1 chrIV:12419472-12419552 ( 15) ATCAAATT 1 chrI:4930355-4930435 ( 20) ATCAAATT 1 chrIII:4103333-4103413 ( 16) ACTCAATT 1 chrIV:16494121-16494201 ( 39) ACTCAATT 1 chrIV:9660112-9660192 ( 64) ACTCAATT 1 chrI:9055006-9055086 ( 24) ACTCAATT 1 chrV:12210094-12210174 ( 4) ACTCAATT 1 chrI:3426008-3426088 ( 44) ACTCAATT 1 chrV:8716321-8716401 ( 72) ACTCAATT 1 chrIII:1731967-1732047 ( 58) ATCCGATT 1 chrX:7679999-7680079 ( 8) ACTCAATT 1 chrX:15548049-15548129 ( 31) ATGCAATT 1 chrI:14726020-14726100 ( 53) ATCTAATT 1 chrIV:6065335-6065415 ( 32) ATTCAATC 1 chrX:5723892-5723972 ( 46) ATTAGATT 1 chrIII:4967389-4967469 ( 72) ATTAGATT 1 chrIII:3224244-3224324 ( 36) ATTAGATT 1 chrV:13681591-13681671 ( 29) ATTAGATT 1 chrIV:1212528-1212608 ( 57) ATTAGATT 1 chrIII:8744157-8744237 ( 39) ATTCAATC 1 chrIV:4052432-4052512 ( 8) ATTCAATG 1 chrX:1185651-1185731 ( 52) ATGGAATT 1 chrV:1223733-1223813 ( 47) ATTCAATG 1 chrII:6493292-6493372 ( 61) ATTCAATG 1 chrX:12479174-12479254 ( 42) ATTCAATG 1 chrII:11088290-11088370 ( 71) ATTGAATC 1 chrIII:6647035-6647115 ( 29) ATTGAATC 1 chrIII:5902721-5902801 ( 28) ATTGAATC 1 chrX:10151099-10151179 ( 34) ATTGAATC 1 chrIII:4028215-4028295 ( 5) ATTGAATG 1 chrII:7559025-7559105 ( 4) ATTTGATT 1 chrX:15552179-15552259 ( 32) ATTTGATT 1 chrV:12747983-12748063 ( 58) ATTTGATT 1 chrX:305235-305315 ( 9) ATTTGATT 1 chrX:9373834-9373914 ( 34) ATTTGATT 1 chrII:10753833-10753913 ( 51) ATTTGATT 1 chrI:14941723-14941803 ( 2) ACCCAATT 1 chrIII:2914212-2914292 ( 44) ATTCTATT 1 chrIII:11333194-11333274 ( 44) ATTCTATT 1 chrI:10283704-10283784 ( 22) ATTCTATT 1 chrI:2157280-2157360 ( 53) ACTCGATT 1 chrV:1313445-1313525 ( 16) ATGAAATT 1 chrX:6963956-6964036 ( 55) ATCGAATC 1 chrV:3452671-3452751 ( 45) ATGAAATT 1 chrIV:6363779-6363859 ( 41) ATCGAATC 1 chrV:8254072-8254152 ( 2) ATGAAATT 1 chrI:11126458-11126538 ( 7) ATTGTATT 1 chrIV:8626404-8626484 ( 18) ATCGAATG 1 chrII:14470208-14470288 ( 23) ATTGTATT 1 chrII:11086925-11087005 ( 18) ACTGGATT 1 chrIV:5915332-5915412 ( 64) ATGCGATT 1 chrII:7991419-7991499 ( 4) ACTTAATT 1 chrIV:10191710-10191790 ( 30) ATCTGATT 1 chrII:11032969-11033049 ( 62) ATGGGATT 1 chrIII:13123641-13123721 ( 45) ATGGGATT 1 chrX:11570117-11570197 ( 63) ATTTAATC 1 chrI:14831290-14831370 ( 44) ATTGGATG 1 chrV:9483876-9483956 ( 18) ACCCGATT 1 chrX:8308638-8308718 ( 8) ATCAAATG 1 chrX:4089141-4089221 ( 27) ACTCAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTSAATT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.30305 E= 8.1e-097 178 -1397 -1397 -1397 -1397 -128 -1397 167 -1397 24 -206 128 -73 91 55 -128 147 -1397 -36 -320 178 -1397 -1397 -1397 -1397 -1397 -1397 180 -1397 -176 -206 163 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTSAATT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 160 E= 8.1e-097 1.000000 0.000000 0.000000 0.000000 0.000000 0.087500 0.000000 0.912500 0.000000 0.250000 0.050000 0.700000 0.175000 0.400000 0.306250 0.118750 0.806250 0.000000 0.162500 0.031250 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.062500 0.050000 0.887500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTSAATT MEME-1 regular expression -------------------------------------------------------------------------------- AT[TC][CG]AATT -------------------------------------------------------------------------------- Time 7.93 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAARRAG MEME-2 width = 8 sites = 78 llr = 570 E-value = 1.4e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAARRAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7297449: pos.-specific C :::::::: probability G 3813661a matrix T :::::::: bits 2.3 * 2.0 * 1.8 * 1.6 * * Relative 1.4 ** ** Entropy 1.1 ******** (10.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAAGGAG consensus G GAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAARRAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:1313445-1313525 4 1.37e-05 AGT AGAAGGAG TACAATGAAA chrIV:5927946-5928026 61 1.37e-05 TGAATTTGGA AGAAGGAG CCGGCAGTTT chrX:1185651-1185731 9 1.37e-05 AGGAGACA AGAAGGAG TGCGCGCGAG chrI:14941723-14941803 60 1.37e-05 CGTCATCATC AGAAGGAG CTTTTCCTTG chrIV:10170985-10171065 24 3.33e-05 TTTGTTCCGA AGAGGGAG AAAGAGCGTG chrV:1227929-1228009 26 3.33e-05 GCGCCTCCAG AGAGGGAG GGGGCAAATT chrX:9803794-9803874 60 3.33e-05 CGCAAGATTT AGAGGGAG AGAAGTTGGT chrI:11655434-11655514 45 3.33e-05 TTCGTAGAAT GGAAGGAG CAGAGAGACT chrI:11656560-11656640 49 7.14e-05 CAACAAAGCA AGAAAGAG AGAGAGATTA chrX:15125600-15125680 35 7.14e-05 AAGTGTGGAA AGAAGAAG AAAAGAGGCA chrX:2926150-2926230 27 7.14e-05 GCTTGAGAAA AGAAGAAG AAAGCAAAAT chrIII:6310554-6310634 46 7.14e-05 AGATGGGTTG AGAAAGAG AGAAAGATGT chrIV:3626637-3626717 69 7.14e-05 GTGCTCGGGG AGAAGAAG AAGC chrI:4008891-4008971 72 7.14e-05 GCTCGAaaga agaagaag a chrI:8507025-8507105 43 7.14e-05 AAGTACCaga agaaagag agagagagag chrV:7816672-7816752 58 7.14e-05 AATGTCGCGA AGAAGAAG CTCTTTGTTA chrIII:9886604-9886684 42 7.14e-05 AAGGAGACGA AGAAAGAG ACAAACGGAT chrI:14831290-14831370 27 7.14e-05 AATGGATAGA AGAAGAAG ATGAGGCTAA chrV:12747983-12748063 37 7.14e-05 AGAGACACAG AGAAAGAG AGCTGAATAG chrX:15128314-15128394 70 7.14e-05 tctAAAAGAT AGAAAGAG GTT chrII:10753833-10753913 40 7.14e-05 CGATTTGAGA AGAAGAAG AAAATTTGAT chrX:3181495-3181575 27 7.14e-05 AATAaagaag agaaagag gaaagaagaa chrIV:5533712-5533792 57 7.85e-05 TATAATACAC GGAGGGAG CTAGAAATTG chrV:3452671-3452751 13 7.85e-05 AGATATAAAA GGAGGGAG GGTAGGCCGG chrIII:3970560-3970640 3 1.33e-04 AG AGAGGAAG TCGCCGAGTC chrX:2522822-2522902 5 1.33e-04 GAAA AGAGGAAG CGAGAAAGGA chrX:6419283-6419363 13 1.33e-04 AGAAGACAAC GGAAAGAG GGGAGGGCGA chrII:8551254-8551334 36 1.33e-04 GAAAGGACAA GGAAGAAG GACAGGAAAG chrIV:11717634-11717714 8 1.33e-04 CCATTTC GGAAAGAG AAGACTTGGT chrI:794393-794473 70 1.33e-04 CAAATATAGA AGAGAGAG GCA chrII:4291969-4292049 18 1.33e-04 CGAGTGAGCA AGAGAGAG AAGGCTAACA chrIII:13123641-13123721 68 1.33e-04 TAGAATTGAG AGAGAGAG AGAAA chrI:14257211-14257291 40 1.33e-04 GTGCTCAGAG AGAGAGAG CATTTTGCTG chrIII:13633987-13634067 54 1.60e-04 gagtaggaga agaaaaag aagaaattgg chrX:8308638-8308718 43 1.60e-04 AAAAATAGAA AGAAAAAG CGAGTTCAAA chrIII:12130904-12130984 33 1.60e-04 TTGTGTGGAG AGAAAAAG GGGCAAAAAA chrIII:3224244-3224324 3 1.60e-04 TG AGAAAAAG TGGAGAAAAG chrII:14098479-14098559 37 1.60e-04 GATGATGAGA AGAAAAAG AAATGGCGAT chrIII:11458084-11458164 48 1.79e-04 GGCAGAAAAC GGAGGAAG GAAGCCTTTG chrIII:3136774-3136854 1 1.79e-04 . GGAGAGAG TACATCCATT chrIII:2686796-2686876 51 1.79e-04 TCACAATTGA GGAGAGAG AACGGAAATT chrI:14279279-14279359 55 1.79e-04 GGCTGGAGGA GGAGGAAG CGCCCGGCCG chrIV:16494121-16494201 58 2.27e-04 CCGGGCATAG AGAAGGGG GACTCTTCCA chrI:14189008-14189088 52 2.27e-04 CGTCTTTTCT AGAGAAAG GCGTCGGGGG chrIV:12419472-12419552 52 2.27e-04 GGAACCGAGT GGAAAAAG ATAGAGATTT chrII:9107546-9107626 20 2.27e-04 gtaagaagat agagaaag gaagaaagat chrII:354640-354720 57 2.27e-04 AAATTGGCGT AGAAGGGG GGATAAGTGC chrIV:8054114-8054194 51 2.56e-04 TACTTGACAG AAAAGGAG AAAAAAGTTG chrI:14835025-14835105 63 2.56e-04 AAAAATGGAG AAAAGGAG ATCAGTTGAC chrIII:5902721-5902801 56 2.56e-04 TTGGAGGGAT AGGAGGAG AACTGCAAGA chrX:10594822-10594902 37 2.84e-04 TCATCAAATA GGAAGGGG CCAACGAAAT chrX:5723892-5723972 19 2.84e-04 CGGCGCGCAA GGAAGGGG AAATTGGGTG chrII:10999284-10999364 35 2.84e-04 ACACTGACTA GGAGAAAG ACAAATTGCA chrX:5515593-5515673 66 3.25e-04 TCAATTGCAA AGGGGGAG AGATGCA chrX:3619001-3619081 37 3.25e-04 GTGTGGTTGG AGGGGGAG AGGGGCTAAA chrII:5947542-5947622 34 3.53e-04 GCCAAATAAG AGAAGAGG TGGAGGAGAA chrI:7885972-7886052 66 3.53e-04 TGATGAAGAG AGAAGAGG GAAGAGA chrII:73505-73585 15 4.33e-04 AGATATATTC AGGAAGAG TGAATAAAGT chrI:2157280-2157360 35 4.33e-04 GTTGAGCACG AAAAGAAG CACTTCTCGA chrIII:2914212-2914292 68 4.33e-04 GAAAGTGAAG AAAAGAAG ATACG chrIII:6647035-6647115 13 4.33e-04 ataagaagaa aaaagaag cagTACAAAT chrII:7559025-7559105 21 4.33e-04 TAGGTTTGCC AAAAAGAG TGAAAAAGAG chrII:10084647-10084727 46 4.33e-04 TGTGCGGTGG AAAAGAAG AGCGCGAGGA chrIII:8877184-8877264 21 4.33e-04 GTCAGATGAA AAAAGAAG AAAACTTTCG chrIII:7253827-7253907 29 4.33e-04 GAAGATAAAG AAAAGAAG AGAGAAGATG chrIII:989728-989808 38 4.38e-04 CAAAAAATGG GGAGGGGG GAAGATGTGC chrX:14959839-14959919 18 4.53e-04 GAAAAGAAAC GGGGGGAG GTGAAATGAA chrX:13631457-13631537 10 4.53e-04 gGGCGGGTA GAAGGGAG GAAAAGAGGT chrIV:1212528-1212608 44 4.93e-04 TCGGCAAAAA GGAAAGGG GGCTAATTAG chrX:15135121-15135201 43 6.08e-04 AGACGGCGGG GAAAAGAG TTTTGAAGAA chrV:1252987-1253067 16 6.08e-04 TATTTGGTGG GGGAGAAG AGCTTGTAAG chrII:7795470-7795550 13 6.08e-04 atAGGGGGCG GAAAAGAG ACTCTGAAAT chrI:14725370-14725450 19 6.83e-04 GACCTTCAGA AGGAAAAG AGTGTGCTCT chrX:3429302-3429382 3 6.97e-04 TC GGAGAGGG GATGCAAAGA chrII:11086925-11087005 37 7.39e-04 CGTTGCACCC GGGGAGAG GAGCTCCAGT chrIV:6366210-6366290 25 8.67e-04 TAGAGACCGA AAAAGGGG GCATTTCTTT chrX:6963956-6964036 17 8.67e-04 AGGAAGTGGG GGGAAAAG CTTACGGGAA chrII:10021876-10021956 2 8.67e-04 A GAAAAAAG AAAACAAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAARRAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:1313445-1313525 1.4e-05 3_[+2]_69 chrIV:5927946-5928026 1.4e-05 60_[+2]_12 chrX:1185651-1185731 1.4e-05 8_[+2]_64 chrI:14941723-14941803 1.4e-05 59_[+2]_13 chrIV:10170985-10171065 3.3e-05 23_[+2]_49 chrV:1227929-1228009 3.3e-05 25_[+2]_47 chrX:9803794-9803874 3.3e-05 59_[+2]_13 chrI:11655434-11655514 3.3e-05 44_[+2]_28 chrI:11656560-11656640 7.1e-05 48_[+2]_24 chrX:15125600-15125680 7.1e-05 34_[+2]_38 chrX:2926150-2926230 7.1e-05 26_[+2]_46 chrIII:6310554-6310634 7.1e-05 45_[+2]_27 chrIV:3626637-3626717 7.1e-05 68_[+2]_4 chrI:4008891-4008971 7.1e-05 71_[+2]_1 chrI:8507025-8507105 7.1e-05 42_[+2]_30 chrV:7816672-7816752 7.1e-05 57_[+2]_15 chrIII:9886604-9886684 7.1e-05 41_[+2]_31 chrI:14831290-14831370 7.1e-05 26_[+2]_46 chrV:12747983-12748063 7.1e-05 36_[+2]_36 chrX:15128314-15128394 7.1e-05 69_[+2]_3 chrII:10753833-10753913 7.1e-05 39_[+2]_33 chrX:3181495-3181575 7.1e-05 26_[+2]_46 chrIV:5533712-5533792 7.8e-05 56_[+2]_16 chrV:3452671-3452751 7.8e-05 12_[+2]_60 chrIII:3970560-3970640 0.00013 2_[+2]_70 chrX:2522822-2522902 0.00013 4_[+2]_68 chrX:6419283-6419363 0.00013 12_[+2]_60 chrII:8551254-8551334 0.00013 35_[+2]_37 chrIV:11717634-11717714 0.00013 7_[+2]_65 chrI:794393-794473 0.00013 69_[+2]_3 chrII:4291969-4292049 0.00013 17_[+2]_55 chrIII:13123641-13123721 0.00013 67_[+2]_5 chrI:14257211-14257291 0.00013 39_[+2]_33 chrIII:13633987-13634067 0.00016 53_[+2]_19 chrX:8308638-8308718 0.00016 42_[+2]_30 chrIII:12130904-12130984 0.00016 32_[+2]_40 chrIII:3224244-3224324 0.00016 2_[+2]_70 chrII:14098479-14098559 0.00016 36_[+2]_36 chrIII:11458084-11458164 0.00018 47_[+2]_25 chrIII:3136774-3136854 0.00018 [+2]_72 chrIII:2686796-2686876 0.00018 50_[+2]_22 chrI:14279279-14279359 0.00018 54_[+2]_18 chrIV:16494121-16494201 0.00023 57_[+2]_15 chrI:14189008-14189088 0.00023 51_[+2]_21 chrIV:12419472-12419552 0.00023 51_[+2]_21 chrII:9107546-9107626 0.00023 19_[+2]_53 chrII:354640-354720 0.00023 56_[+2]_16 chrIV:8054114-8054194 0.00026 50_[+2]_22 chrI:14835025-14835105 0.00026 62_[+2]_10 chrIII:5902721-5902801 0.00026 55_[+2]_17 chrX:10594822-10594902 0.00028 36_[+2]_36 chrX:5723892-5723972 0.00028 18_[+2]_54 chrII:10999284-10999364 0.00028 34_[+2]_38 chrX:5515593-5515673 0.00033 65_[+2]_7 chrX:3619001-3619081 0.00033 36_[+2]_36 chrII:5947542-5947622 0.00035 33_[+2]_39 chrI:7885972-7886052 0.00035 65_[+2]_7 chrII:73505-73585 0.00043 14_[+2]_58 chrI:2157280-2157360 0.00043 34_[+2]_38 chrIII:2914212-2914292 0.00043 67_[+2]_5 chrIII:6647035-6647115 0.00043 12_[+2]_60 chrII:7559025-7559105 0.00043 20_[+2]_52 chrII:10084647-10084727 0.00043 45_[+2]_27 chrIII:8877184-8877264 0.00043 20_[+2]_52 chrIII:7253827-7253907 0.00043 28_[+2]_44 chrIII:989728-989808 0.00044 37_[+2]_35 chrX:14959839-14959919 0.00045 17_[+2]_55 chrX:13631457-13631537 0.00045 9_[+2]_63 chrIV:1212528-1212608 0.00049 43_[+2]_29 chrX:15135121-15135201 0.00061 42_[+2]_30 chrV:1252987-1253067 0.00061 15_[+2]_57 chrII:7795470-7795550 0.00061 12_[+2]_60 chrI:14725370-14725450 0.00068 18_[+2]_54 chrX:3429302-3429382 0.0007 2_[+2]_70 chrII:11086925-11087005 0.00074 36_[+2]_36 chrIV:6366210-6366290 0.00087 24_[+2]_48 chrX:6963956-6964036 0.00087 16_[+2]_56 chrII:10021876-10021956 0.00087 1_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAARRAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAARRAG width=8 seqs=78 chrV:1313445-1313525 ( 4) AGAAGGAG 1 chrIV:5927946-5928026 ( 61) AGAAGGAG 1 chrX:1185651-1185731 ( 9) AGAAGGAG 1 chrI:14941723-14941803 ( 60) AGAAGGAG 1 chrIV:10170985-10171065 ( 24) AGAGGGAG 1 chrV:1227929-1228009 ( 26) AGAGGGAG 1 chrX:9803794-9803874 ( 60) AGAGGGAG 1 chrI:11655434-11655514 ( 45) GGAAGGAG 1 chrI:11656560-11656640 ( 49) AGAAAGAG 1 chrX:15125600-15125680 ( 35) AGAAGAAG 1 chrX:2926150-2926230 ( 27) AGAAGAAG 1 chrIII:6310554-6310634 ( 46) AGAAAGAG 1 chrIV:3626637-3626717 ( 69) AGAAGAAG 1 chrI:4008891-4008971 ( 72) AGAAGAAG 1 chrI:8507025-8507105 ( 43) AGAAAGAG 1 chrV:7816672-7816752 ( 58) AGAAGAAG 1 chrIII:9886604-9886684 ( 42) AGAAAGAG 1 chrI:14831290-14831370 ( 27) AGAAGAAG 1 chrV:12747983-12748063 ( 37) AGAAAGAG 1 chrX:15128314-15128394 ( 70) AGAAAGAG 1 chrII:10753833-10753913 ( 40) AGAAGAAG 1 chrX:3181495-3181575 ( 27) AGAAAGAG 1 chrIV:5533712-5533792 ( 57) GGAGGGAG 1 chrV:3452671-3452751 ( 13) GGAGGGAG 1 chrIII:3970560-3970640 ( 3) AGAGGAAG 1 chrX:2522822-2522902 ( 5) AGAGGAAG 1 chrX:6419283-6419363 ( 13) GGAAAGAG 1 chrII:8551254-8551334 ( 36) GGAAGAAG 1 chrIV:11717634-11717714 ( 8) GGAAAGAG 1 chrI:794393-794473 ( 70) AGAGAGAG 1 chrII:4291969-4292049 ( 18) AGAGAGAG 1 chrIII:13123641-13123721 ( 68) AGAGAGAG 1 chrI:14257211-14257291 ( 40) AGAGAGAG 1 chrIII:13633987-13634067 ( 54) AGAAAAAG 1 chrX:8308638-8308718 ( 43) AGAAAAAG 1 chrIII:12130904-12130984 ( 33) AGAAAAAG 1 chrIII:3224244-3224324 ( 3) AGAAAAAG 1 chrII:14098479-14098559 ( 37) AGAAAAAG 1 chrIII:11458084-11458164 ( 48) GGAGGAAG 1 chrIII:3136774-3136854 ( 1) GGAGAGAG 1 chrIII:2686796-2686876 ( 51) GGAGAGAG 1 chrI:14279279-14279359 ( 55) GGAGGAAG 1 chrIV:16494121-16494201 ( 58) AGAAGGGG 1 chrI:14189008-14189088 ( 52) AGAGAAAG 1 chrIV:12419472-12419552 ( 52) GGAAAAAG 1 chrII:9107546-9107626 ( 20) AGAGAAAG 1 chrII:354640-354720 ( 57) AGAAGGGG 1 chrIV:8054114-8054194 ( 51) AAAAGGAG 1 chrI:14835025-14835105 ( 63) AAAAGGAG 1 chrIII:5902721-5902801 ( 56) AGGAGGAG 1 chrX:10594822-10594902 ( 37) GGAAGGGG 1 chrX:5723892-5723972 ( 19) GGAAGGGG 1 chrII:10999284-10999364 ( 35) GGAGAAAG 1 chrX:5515593-5515673 ( 66) AGGGGGAG 1 chrX:3619001-3619081 ( 37) AGGGGGAG 1 chrII:5947542-5947622 ( 34) AGAAGAGG 1 chrI:7885972-7886052 ( 66) AGAAGAGG 1 chrII:73505-73585 ( 15) AGGAAGAG 1 chrI:2157280-2157360 ( 35) AAAAGAAG 1 chrIII:2914212-2914292 ( 68) AAAAGAAG 1 chrIII:6647035-6647115 ( 13) AAAAGAAG 1 chrII:7559025-7559105 ( 21) AAAAAGAG 1 chrII:10084647-10084727 ( 46) AAAAGAAG 1 chrIII:8877184-8877264 ( 21) AAAAGAAG 1 chrIII:7253827-7253907 ( 29) AAAAGAAG 1 chrIII:989728-989808 ( 38) GGAGGGGG 1 chrX:14959839-14959919 ( 18) GGGGGGAG 1 chrX:13631457-13631537 ( 10) GAAGGGAG 1 chrIV:1212528-1212608 ( 44) GGAAAGGG 1 chrX:15135121-15135201 ( 43) GAAAAGAG 1 chrV:1252987-1253067 ( 16) GGGAGAAG 1 chrII:7795470-7795550 ( 13) GAAAAGAG 1 chrI:14725370-14725450 ( 19) AGGAAAAG 1 chrX:3429302-3429382 ( 3) GGAGAGGG 1 chrII:11086925-11087005 ( 37) GGGGAGAG 1 chrIV:6366210-6366290 ( 25) AAAAGGGG 1 chrX:6963956-6964036 ( 17) GGGAAAAG 1 chrII:10021876-10021956 ( 2) GAAAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAARRAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 1.4e-015 122 -1293 62 -1293 -70 -1293 197 -1293 160 -1293 -86 -1293 122 -1293 62 -1293 58 -1293 143 -1293 54 -1293 146 -1293 158 -1293 -71 -1293 -1293 -1293 226 -1293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAARRAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 1.4e-015 0.679487 0.000000 0.320513 0.000000 0.179487 0.000000 0.820513 0.000000 0.884615 0.000000 0.115385 0.000000 0.679487 0.000000 0.320513 0.000000 0.435897 0.000000 0.564103 0.000000 0.423077 0.000000 0.576923 0.000000 0.871795 0.000000 0.128205 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAARRAG MEME-2 regular expression -------------------------------------------------------------------------------- [AG]GA[AG][GA][GA]AG -------------------------------------------------------------------------------- Time 11.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CTYYTYYY MEME-3 width = 8 sites = 90 llr = 628 E-value = 2.5e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTYYTYYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:463464 probability G :::::::: matrix T :a647646 bits 2.3 2.0 * 1.8 ** 1.6 ** Relative 1.4 ** Entropy 1.1 ** ** * (10.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTCTTCT consensus CTCCTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYTYYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3202509-3202589 26 3.23e-05 TTATTGCCGG CTTCTTCT TTGTGATATG chrIII:10512725-10512805 11 3.23e-05 CTCCTGCCGG CTCCTTCT CCTTGTCCTG chrIII:3970560-3970640 49 3.23e-05 CCTCGCACGT CTTCTTCT CTTCTCTACT chrI:2697189-2697269 13 3.23e-05 AGCACATTGT CTTCTTCT AAGACATATA chrV:7110519-7110599 7 3.23e-05 ACTCTT CTCCTTCT GCAACCGTTT chrX:5869762-5869842 48 3.23e-05 TAGGGGTCCA CTTCTTCT CCTCTCATCT chrI:9055006-9055086 56 3.23e-05 ACAATGGACA CTTCTTCT TATAATATTC chrIII:4967389-4967469 56 3.23e-05 TTTGCTCACT CTTCTTCT ATAAGATTAT chrV:9483876-9483956 64 3.23e-05 CGTTTGActt cttcttct tctcttctt chrII:10060648-10060728 35 3.23e-05 GTGTGTCTGA CTTCTTCT CTTTTCTCAA chrIV:11723436-11723516 4 3.23e-05 cgt cttcttct tcttGCCACC chrIV:6055015-6055095 60 3.23e-05 TGTGTGCACT CTTCTTCT CCCCCATATA chrV:11337028-11337108 13 3.23e-05 GAATGAGCCT CTCCTTCT CATTGCTCGA chrIII:8744157-8744237 15 3.23e-05 GTCAAGCctt cttcttct gcttcttctC chrIII:7253827-7253907 54 3.23e-05 ATGCATTGAG CTTCTTCT CAGTCTATGA chrI:5971964-5972044 67 5.61e-05 TTTCAACTTG CTTCTTCC TCATTC chrV:16749607-16749687 45 5.61e-05 AATTCTCCAT CTTCTTCC ACAAGCCTGC chrI:10283704-10283784 62 5.61e-05 TCTCACTTTC CTCCTTCC CTTCCGTTTT chrX:15321966-15322046 45 7.99e-05 CTCCTACTCT CTCCTCCT CAACGATCCA chrIV:962019-962099 47 7.99e-05 ACCATAATCT CTCCTCCT CCACACATGT chrIII:11333194-11333274 25 7.99e-05 GTGCCATTCT CTTCTCCT TTTTGTGGCT chrIV:6363779-6363859 6 7.99e-05 CCGTC CTCCTCCT AAATGCGTAA chrX:13876063-13876143 50 7.99e-05 TCGGTTGGTC CTCCTCCT TCCCTATCCC chrI:11656560-11656640 1 9.75e-05 . CTCCTCCC CTCCACTTAC chrIV:5915332-5915412 19 9.75e-05 TTGCCGTTTC CTTCTCCC TCTACTCCGT chrI:11671485-11671565 58 9.75e-05 CTGACGAGTC CTCCTCCC CCAGAACCCT chrI:7368445-7368525 42 9.75e-05 CCGTCATCAG CTTCTCCC TTTTTCTCGG chrI:10389770-10389850 21 1.21e-04 GAAATCCCCT CTCCCTCT CGATTTTTGC chrIV:5109142-5109222 18 2.26e-04 TCGATTAACT CTCCCTCC TACTTCCAAG chrIV:951728-951808 52 2.26e-04 CCCCCAGTAT CTTCTTTT ATGGGGAAGC chrII:10759163-10759243 12 2.26e-04 tctacgtctt ctttttct tctCTATCGA chrII:10971837-10971917 32 2.26e-04 ATTCTCTAAC CTTCCTCC AATTCAACAC chrIV:8626404-8626484 45 2.26e-04 GAAAAGCCTA CTCTTTCT CTTACTCCGG chrIII:2552538-2552618 2 2.26e-04 T CTTTTTCT TTCCTCGCCT chrII:7991419-7991499 65 2.26e-04 AGCCCATCTT CTTTTTCT TCTTTTCC chrIII:3414580-3414660 41 2.26e-04 TCTGTCTTCC CTCTTTCT ATTTCAAAGT chrV:8716321-8716401 29 2.26e-04 TCCTTCGTGT CTTCTTTT CAGCGGAGAA chrX:15548049-15548129 56 3.08e-04 GTGCCATGCT CTTCCCCT TTCTTTTTTC chrII:11353614-11353694 34 3.08e-04 TTATGTCAAA CTCTTTCC CCGTGCCTTT chrX:8648776-8648856 27 3.08e-04 GTTGTTTAGC CTTCTTTC TTTGTCTGGT chrIV:3667944-3668024 12 3.08e-04 ACTGCTCTCC CTCCCCCT ATTCTTCATC chrX:10151099-10151179 70 3.08e-04 ACAACACATA CTCCTTTC GTG chrV:13681591-13681671 58 3.08e-04 TCTGATCATG CTCCCCCT CGACCACTCC chrX:12549208-12549288 29 3.08e-04 ATGTGAAAGG CTTTTTCC GTTAAATGCA chrIII:4132333-4132413 67 3.08e-04 TGCCATCATA CTTCTTTC CTCATT chrII:163385-163465 42 3.86e-04 CACAATGAGA CTCCCCCC GCTCATCCAT chrIII:5402568-5402648 3 3.86e-04 GT CTTCTCTT CTACACTACT chrI:3426008-3426088 5 3.86e-04 CCGC CTTCCCCC CTCGATTTGG chrX:16962813-16962893 64 3.86e-04 CTATCTCCCA CTCCCCCC TTTCCATCG chrI:4930355-4930435 36 3.86e-04 TTTCGGTCCC CTTCCCCC TCAATCCGCT chrI:14941723-14941803 68 3.86e-04 TCAGAAGGAG CTTTTCCT TGTCT chrIII:5139291-5139371 69 4.34e-04 CGCTTTCTTG CTCTTCCC TCTT chrX:14694766-14694846 26 4.34e-04 ATCCCCCTCT CTTCTCTC ACTTCTCCAG chrX:16817022-16817102 37 4.34e-04 CGCTCGCATC CTTCTCTC CTTGAGCGGC chrI:14279279-14279359 1 4.34e-04 . CTCTTCCC GCCGCAAAAC chrIII:10018172-10018252 35 4.98e-04 GATTAAGTCT CTCTCTCT CTTGGTGGCT chrV:12901452-12901532 3 4.98e-04 CA CTTTCTCT CAATCAAGCG chrIV:10191710-10191790 63 4.98e-04 TTCAATTTTT CTTCCTTT TTTGTACGCG chrII:14098479-14098559 70 4.98e-04 CCAATTTTGT CTTCCTTT CCC chrI:277134-277214 63 4.98e-04 AATTCTCTCA CTCTCTCT CTCGGCTTCT chrII:4584471-4584551 62 6.05e-04 TATCCTTTGG CTCTCTCC GAAACGAAGA chrIII:11358433-11358513 5 6.05e-04 ATTT CTCTCTCC AAAATGGATA chrIV:2173076-2173156 58 6.05e-04 AGCTCTTTAT CTCTTTTT TGGAGcacac chrIV:4005298-4005378 38 6.05e-04 CTACTAAAAG CTCCCTTC CCATCTAACA chrIV:14960204-14960284 73 6.05e-04 CGAGTTTTCA CTTTTTTT chrIII:2686796-2686876 5 6.05e-04 TTTC CTTTTTTT TCCAATTTTT chrX:17352251-17352331 22 6.05e-04 GGACTCTTTT CTTTTTTT GCAGCAACTT chrX:3181495-3181575 61 6.05e-04 agaagaGAGG CTCCCTTC AGCTCGGGTC chrIV:17233697-17233777 65 6.05e-04 AAACGAGAAA CTTTTTTT TAACGAAA chrX:10594822-10594902 21 6.96e-04 GATCTTTCCT CTCTTTTC ATCAAATAGG chrV:8555769-8555849 49 6.96e-04 TTCTTCTGTC CTCCCCTT TTTCATTCCT chrIII:3634322-3634402 72 6.96e-04 GGTGAATCCC CTTTTTTC T chrV:11953784-11953864 72 6.96e-04 AAGACGGGCG CTTCCCTT T chrII:10696200-10696280 9 6.96e-04 ATAATCAA CTTTTTTC TGTATAATAT chrIV:5139354-5139434 34 6.96e-04 AATTTCCCGA CTTTTTTC ACGGGCAAAT chrIII:3224244-3224324 54 6.96e-04 GCCCCTTGGG CTCTTTTC GGAGAGCCAC chrX:13246825-13246905 39 6.96e-04 ATCGCACCCT CTCCCCTT CCCATAATTT chrI:14725370-14725450 33 7.75e-04 AAAGAGTGTG CTCTTCTT CAGCTGCTCC chrIV:6366210-6366290 59 7.75e-04 TTTTTTGCGA CTTTTCTT CTTGACAACC chrIII:612054-612134 47 7.75e-04 GGAAGACCCG CTTTCCCC CGCGCGAAAA chrIII:989728-989808 69 7.75e-04 ATTCTGTTAT CTCTTCTT TAGC chrI:14726020-14726100 70 8.07e-04 TATTTGTTCC CTTTTCTC TAC chrIV:563577-563657 45 8.07e-04 TTGGGTTTTC CTCTTCTC GTCGTGTAGT chrIII:1731967-1732047 5 8.07e-04 ATGA CTTTTCTC GGCTTCACAC chrX:6705343-6705423 58 8.51e-04 GACGCCTTTC CTTTCTTT TCAATTCGTT chrX:4089141-4089221 43 9.16e-04 TCCCAAGTCC CTCTCCTT TGCAAATGTG chrIII:4103333-4103413 58 9.83e-04 GCATCCCTCA TTTCTTCT CCGTTTCTCT chrIV:10500641-10500721 50 9.83e-04 GTGTCTCTAT TTCCTTCT AAAATCATTT chrI:14189008-14189088 34 1.02e-03 CAATTGTCGT TTTCTTCC CGTCTTTTCT chrV:20652065-20652145 51 1.05e-03 CCGATTCATT TTTCTCCT CAATTTCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYTYYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3202509-3202589 3.2e-05 25_[+3]_47 chrIII:10512725-10512805 3.2e-05 10_[+3]_62 chrIII:3970560-3970640 3.2e-05 48_[+3]_24 chrI:2697189-2697269 3.2e-05 12_[+3]_60 chrV:7110519-7110599 3.2e-05 6_[+3]_66 chrX:5869762-5869842 3.2e-05 47_[+3]_25 chrI:9055006-9055086 3.2e-05 55_[+3]_17 chrIII:4967389-4967469 3.2e-05 55_[+3]_17 chrV:9483876-9483956 3.2e-05 63_[+3]_9 chrII:10060648-10060728 3.2e-05 34_[+3]_38 chrIV:11723436-11723516 3.2e-05 3_[+3]_69 chrIV:6055015-6055095 3.2e-05 59_[+3]_13 chrV:11337028-11337108 3.2e-05 12_[+3]_60 chrIII:8744157-8744237 3.2e-05 14_[+3]_58 chrIII:7253827-7253907 3.2e-05 53_[+3]_19 chrI:5971964-5972044 5.6e-05 66_[+3]_6 chrV:16749607-16749687 5.6e-05 44_[+3]_28 chrI:10283704-10283784 5.6e-05 61_[+3]_11 chrX:15321966-15322046 8e-05 44_[+3]_28 chrIV:962019-962099 8e-05 46_[+3]_26 chrIII:11333194-11333274 8e-05 24_[+3]_48 chrIV:6363779-6363859 8e-05 5_[+3]_67 chrX:13876063-13876143 8e-05 49_[+3]_23 chrI:11656560-11656640 9.8e-05 [+3]_72 chrIV:5915332-5915412 9.8e-05 18_[+3]_54 chrI:11671485-11671565 9.8e-05 57_[+3]_15 chrI:7368445-7368525 9.8e-05 41_[+3]_31 chrI:10389770-10389850 0.00012 20_[+3]_52 chrIV:5109142-5109222 0.00023 17_[+3]_55 chrIV:951728-951808 0.00023 51_[+3]_21 chrII:10759163-10759243 0.00023 11_[+3]_61 chrII:10971837-10971917 0.00023 31_[+3]_41 chrIV:8626404-8626484 0.00023 44_[+3]_28 chrIII:2552538-2552618 0.00023 1_[+3]_71 chrII:7991419-7991499 0.00023 64_[+3]_8 chrIII:3414580-3414660 0.00023 40_[+3]_32 chrV:8716321-8716401 0.00023 28_[+3]_44 chrX:15548049-15548129 0.00031 55_[+3]_17 chrII:11353614-11353694 0.00031 33_[+3]_39 chrX:8648776-8648856 0.00031 26_[+3]_46 chrIV:3667944-3668024 0.00031 11_[+3]_61 chrX:10151099-10151179 0.00031 69_[+3]_3 chrV:13681591-13681671 0.00031 57_[+3]_15 chrX:12549208-12549288 0.00031 28_[+3]_44 chrIII:4132333-4132413 0.00031 66_[+3]_6 chrII:163385-163465 0.00039 41_[+3]_31 chrIII:5402568-5402648 0.00039 2_[+3]_70 chrI:3426008-3426088 0.00039 4_[+3]_68 chrX:16962813-16962893 0.00039 63_[+3]_9 chrI:4930355-4930435 0.00039 35_[+3]_37 chrI:14941723-14941803 0.00039 67_[+3]_5 chrIII:5139291-5139371 0.00043 68_[+3]_4 chrX:14694766-14694846 0.00043 25_[+3]_47 chrX:16817022-16817102 0.00043 36_[+3]_36 chrI:14279279-14279359 0.00043 [+3]_72 chrIII:10018172-10018252 0.0005 34_[+3]_38 chrV:12901452-12901532 0.0005 2_[+3]_70 chrIV:10191710-10191790 0.0005 62_[+3]_10 chrII:14098479-14098559 0.0005 69_[+3]_3 chrI:277134-277214 0.0005 62_[+3]_10 chrII:4584471-4584551 0.0006 61_[+3]_11 chrIII:11358433-11358513 0.0006 4_[+3]_68 chrIV:2173076-2173156 0.0006 57_[+3]_15 chrIV:4005298-4005378 0.0006 37_[+3]_35 chrIV:14960204-14960284 0.0006 72_[+3] chrIII:2686796-2686876 0.0006 4_[+3]_68 chrX:17352251-17352331 0.0006 21_[+3]_51 chrX:3181495-3181575 0.0006 60_[+3]_12 chrIV:17233697-17233777 0.0006 64_[+3]_8 chrX:10594822-10594902 0.0007 20_[+3]_52 chrV:8555769-8555849 0.0007 48_[+3]_24 chrIII:3634322-3634402 0.0007 71_[+3]_1 chrV:11953784-11953864 0.0007 71_[+3]_1 chrII:10696200-10696280 0.0007 8_[+3]_64 chrIV:5139354-5139434 0.0007 33_[+3]_39 chrIII:3224244-3224324 0.0007 53_[+3]_19 chrX:13246825-13246905 0.0007 38_[+3]_34 chrI:14725370-14725450 0.00078 32_[+3]_40 chrIV:6366210-6366290 0.00078 58_[+3]_14 chrIII:612054-612134 0.00078 46_[+3]_26 chrIII:989728-989808 0.00078 68_[+3]_4 chrI:14726020-14726100 0.00081 69_[+3]_3 chrIV:563577-563657 0.00081 44_[+3]_28 chrIII:1731967-1732047 0.00081 4_[+3]_68 chrX:6705343-6705423 0.00085 57_[+3]_15 chrX:4089141-4089221 0.00092 42_[+3]_30 chrIII:4103333-4103413 0.00098 57_[+3]_15 chrIV:10500641-10500721 0.00098 49_[+3]_23 chrI:14189008-14189088 0.001 33_[+3]_39 chrV:20652065-20652145 0.001 50_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYTYYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTYYTYYY width=8 seqs=90 chrX:3202509-3202589 ( 26) CTTCTTCT 1 chrIII:10512725-10512805 ( 11) CTCCTTCT 1 chrIII:3970560-3970640 ( 49) CTTCTTCT 1 chrI:2697189-2697269 ( 13) CTTCTTCT 1 chrV:7110519-7110599 ( 7) CTCCTTCT 1 chrX:5869762-5869842 ( 48) CTTCTTCT 1 chrI:9055006-9055086 ( 56) CTTCTTCT 1 chrIII:4967389-4967469 ( 56) CTTCTTCT 1 chrV:9483876-9483956 ( 64) CTTCTTCT 1 chrII:10060648-10060728 ( 35) CTTCTTCT 1 chrIV:11723436-11723516 ( 4) CTTCTTCT 1 chrIV:6055015-6055095 ( 60) CTTCTTCT 1 chrV:11337028-11337108 ( 13) CTCCTTCT 1 chrIII:8744157-8744237 ( 15) CTTCTTCT 1 chrIII:7253827-7253907 ( 54) CTTCTTCT 1 chrI:5971964-5972044 ( 67) CTTCTTCC 1 chrV:16749607-16749687 ( 45) CTTCTTCC 1 chrI:10283704-10283784 ( 62) CTCCTTCC 1 chrX:15321966-15322046 ( 45) CTCCTCCT 1 chrIV:962019-962099 ( 47) CTCCTCCT 1 chrIII:11333194-11333274 ( 25) CTTCTCCT 1 chrIV:6363779-6363859 ( 6) CTCCTCCT 1 chrX:13876063-13876143 ( 50) CTCCTCCT 1 chrI:11656560-11656640 ( 1) CTCCTCCC 1 chrIV:5915332-5915412 ( 19) CTTCTCCC 1 chrI:11671485-11671565 ( 58) CTCCTCCC 1 chrI:7368445-7368525 ( 42) CTTCTCCC 1 chrI:10389770-10389850 ( 21) CTCCCTCT 1 chrIV:5109142-5109222 ( 18) CTCCCTCC 1 chrIV:951728-951808 ( 52) CTTCTTTT 1 chrII:10759163-10759243 ( 12) CTTTTTCT 1 chrII:10971837-10971917 ( 32) CTTCCTCC 1 chrIV:8626404-8626484 ( 45) CTCTTTCT 1 chrIII:2552538-2552618 ( 2) CTTTTTCT 1 chrII:7991419-7991499 ( 65) CTTTTTCT 1 chrIII:3414580-3414660 ( 41) CTCTTTCT 1 chrV:8716321-8716401 ( 29) CTTCTTTT 1 chrX:15548049-15548129 ( 56) CTTCCCCT 1 chrII:11353614-11353694 ( 34) CTCTTTCC 1 chrX:8648776-8648856 ( 27) CTTCTTTC 1 chrIV:3667944-3668024 ( 12) CTCCCCCT 1 chrX:10151099-10151179 ( 70) CTCCTTTC 1 chrV:13681591-13681671 ( 58) CTCCCCCT 1 chrX:12549208-12549288 ( 29) CTTTTTCC 1 chrIII:4132333-4132413 ( 67) CTTCTTTC 1 chrII:163385-163465 ( 42) CTCCCCCC 1 chrIII:5402568-5402648 ( 3) CTTCTCTT 1 chrI:3426008-3426088 ( 5) CTTCCCCC 1 chrX:16962813-16962893 ( 64) CTCCCCCC 1 chrI:4930355-4930435 ( 36) CTTCCCCC 1 chrI:14941723-14941803 ( 68) CTTTTCCT 1 chrIII:5139291-5139371 ( 69) CTCTTCCC 1 chrX:14694766-14694846 ( 26) CTTCTCTC 1 chrX:16817022-16817102 ( 37) CTTCTCTC 1 chrI:14279279-14279359 ( 1) CTCTTCCC 1 chrIII:10018172-10018252 ( 35) CTCTCTCT 1 chrV:12901452-12901532 ( 3) CTTTCTCT 1 chrIV:10191710-10191790 ( 63) CTTCCTTT 1 chrII:14098479-14098559 ( 70) CTTCCTTT 1 chrI:277134-277214 ( 63) CTCTCTCT 1 chrII:4584471-4584551 ( 62) CTCTCTCC 1 chrIII:11358433-11358513 ( 5) CTCTCTCC 1 chrIV:2173076-2173156 ( 58) CTCTTTTT 1 chrIV:4005298-4005378 ( 38) CTCCCTTC 1 chrIV:14960204-14960284 ( 73) CTTTTTTT 1 chrIII:2686796-2686876 ( 5) CTTTTTTT 1 chrX:17352251-17352331 ( 22) CTTTTTTT 1 chrX:3181495-3181575 ( 61) CTCCCTTC 1 chrIV:17233697-17233777 ( 65) CTTTTTTT 1 chrX:10594822-10594902 ( 21) CTCTTTTC 1 chrV:8555769-8555849 ( 49) CTCCCCTT 1 chrIII:3634322-3634402 ( 72) CTTTTTTC 1 chrV:11953784-11953864 ( 72) CTTCCCTT 1 chrII:10696200-10696280 ( 9) CTTTTTTC 1 chrIV:5139354-5139434 ( 34) CTTTTTTC 1 chrIII:3224244-3224324 ( 54) CTCTTTTC 1 chrX:13246825-13246905 ( 39) CTCCCCTT 1 chrI:14725370-14725450 ( 33) CTCTTCTT 1 chrIV:6366210-6366290 ( 59) CTTTTCTT 1 chrIII:612054-612134 ( 47) CTTTCCCC 1 chrIII:989728-989808 ( 69) CTCTTCTT 1 chrI:14726020-14726100 ( 70) CTTTTCTC 1 chrIV:563577-563657 ( 45) CTCTTCTC 1 chrIII:1731967-1732047 ( 5) CTTTTCTC 1 chrX:6705343-6705423 ( 58) CTTTCTTT 1 chrX:4089141-4089221 ( 43) CTCTCCTT 1 chrIII:4103333-4103413 ( 58) TTTCTTCT 1 chrIV:10500641-10500721 ( 50) TTCCTTCT 1 chrI:14189008-14189088 ( 34) TTTCTTCC 1 chrV:20652065-20652145 ( 51) TTTCTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYTYYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.20831 E= 2.5e-014 -1314 217 -1314 -269 -1314 -1314 -1314 180 -1314 99 -1314 101 -1314 155 -1314 39 -1314 39 -1314 133 -1314 83 -1314 111 -1314 158 -1314 35 -1314 91 -1314 106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYTYYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 2.5e-014 0.000000 0.955556 0.000000 0.044444 0.000000 0.000000 0.000000 1.000000 0.000000 0.422222 0.000000 0.577778 0.000000 0.622222 0.000000 0.377778 0.000000 0.277778 0.000000 0.722222 0.000000 0.377778 0.000000 0.622222 0.000000 0.633333 0.000000 0.366667 0.000000 0.400000 0.000000 0.600000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYYTYYY MEME-3 regular expression -------------------------------------------------------------------------------- CT[TC][CT][TC][TC][CT][TC] -------------------------------------------------------------------------------- Time 14.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-4 width = 8 sites = 18 llr = 166 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1::::1 pos.-specific C ::::::11 probability G 8:9:a:92 matrix T 2a:a:a:6 bits 2.3 * 2.0 * * 1.8 ****** 1.6 ******* Relative 1.4 ******* Entropy 1.1 ******* (13.3 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10512725-10512805 45 1.29e-05 GAATTCGTGT GTGTGTGT GCTCTTTTGC chrIV:4052432-4052512 59 1.29e-05 CCCGGAGAGT GTGTGTGT GTTGCCGAGG chrIII:5139291-5139371 20 1.29e-05 tggtgtgcat gtgtgtgt gtgggtCATG chrIV:3626637-3626717 51 1.29e-05 AAGAGAGGAT GTGTGTGT GTGCTCGGGG chrIII:2914212-2914292 23 1.29e-05 CAAGGGGTGT GTGTGTGT GTGCTCCGAG chrX:2727814-2727894 26 1.29e-05 ATTGTTGGTG GTGTGTGT CGTCGGCCCA chrIII:2391863-2391943 43 1.29e-05 CATGTTTTGT GTGTGTGT GGACTGAGTT chrIII:11333194-11333274 67 1.29e-05 TATGCtgtgt gtgtgtgt gtgtgt chrX:3619001-3619081 25 2.24e-05 TCATCGGTCA GTGTGTGG TTGGAGGGGG chrV:9911370-9911450 39 3.55e-05 tggtttgtga gtgtgtga gagagtgGTA chrIV:10500641-10500721 2 3.55e-05 C GTGTGTGA TGATGCACAA chrI:2697189-2697269 44 5.33e-05 CCCTCCCTAT TTGTGTGT ATATATACAC chrV:7873122-7873202 63 7.60e-05 AATTATGGTA GTGTGTGC ACGGCGACAA chrII:10060648-10060728 25 7.60e-05 TAGAGAGTAT GTGTGTCT GACTTCTTCT chrI:4008891-4008971 49 8.89e-05 CCCGGTGCAT TTGTGTGG TGAGGGCTCG chrIII:12130904-12130984 23 8.89e-05 TACACATGAG TTGTGTGG AGAGAAAAAG chrII:7795470-7795550 37 9.85e-05 AAATTGAATT GTGTGTCG AACTGGTAAG chrIII:2552538-2552618 69 1.17e-04 TTACATGTAT GTATGTGT ACGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10512725-10512805 1.3e-05 44_[+4]_28 chrIV:4052432-4052512 1.3e-05 58_[+4]_14 chrIII:5139291-5139371 1.3e-05 19_[+4]_53 chrIV:3626637-3626717 1.3e-05 50_[+4]_22 chrIII:2914212-2914292 1.3e-05 22_[+4]_50 chrX:2727814-2727894 1.3e-05 25_[+4]_47 chrIII:2391863-2391943 1.3e-05 42_[+4]_30 chrIII:11333194-11333274 1.3e-05 66_[+4]_6 chrX:3619001-3619081 2.2e-05 24_[+4]_48 chrV:9911370-9911450 3.5e-05 38_[+4]_34 chrIV:10500641-10500721 3.5e-05 1_[+4]_71 chrI:2697189-2697269 5.3e-05 43_[+4]_29 chrV:7873122-7873202 7.6e-05 62_[+4]_10 chrII:10060648-10060728 7.6e-05 24_[+4]_48 chrI:4008891-4008971 8.9e-05 48_[+4]_24 chrIII:12130904-12130984 8.9e-05 22_[+4]_50 chrII:7795470-7795550 9.8e-05 36_[+4]_36 chrIII:2552538-2552618 0.00012 68_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=18 chrIII:10512725-10512805 ( 45) GTGTGTGT 1 chrIV:4052432-4052512 ( 59) GTGTGTGT 1 chrIII:5139291-5139371 ( 20) GTGTGTGT 1 chrIV:3626637-3626717 ( 51) GTGTGTGT 1 chrIII:2914212-2914292 ( 23) GTGTGTGT 1 chrX:2727814-2727894 ( 26) GTGTGTGT 1 chrIII:2391863-2391943 ( 43) GTGTGTGT 1 chrIII:11333194-11333274 ( 67) GTGTGTGT 1 chrX:3619001-3619081 ( 25) GTGTGTGG 1 chrV:9911370-9911450 ( 39) GTGTGTGA 1 chrIV:10500641-10500721 ( 2) GTGTGTGA 1 chrI:2697189-2697269 ( 44) TTGTGTGT 1 chrV:7873122-7873202 ( 63) GTGTGTGC 1 chrII:10060648-10060728 ( 25) GTGTGTCT 1 chrI:4008891-4008971 ( 49) TTGTGTGG 1 chrIII:12130904-12130984 ( 23) TTGTGTGG 1 chrII:7795470-7795550 ( 37) GTGTGTCG 1 chrIII:2552538-2552618 ( 69) GTATGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 1.2e+002 -1081 -1081 199 -79 -1081 -1081 -1081 180 -239 -1081 217 -1081 -1081 -1081 -1081 180 -1081 -1081 226 -1081 -1081 -1081 -1081 180 -1081 -93 209 -1081 -139 -193 9 109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.2e+002 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.055556 0.000000 0.944444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.111111 0.055556 0.222222 0.611111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 regular expression -------------------------------------------------------------------------------- GTGTGTG[TG] -------------------------------------------------------------------------------- Time 18.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CGSGSGMG MEME-5 width = 8 sites = 17 llr = 159 E-value = 2.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGSGSGMG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3:::::4: pos.-specific C 7:5:6:5: probability G :a5a4a1a matrix T :::::::: bits 2.3 * * * * 2.0 * * * * 1.8 * * * * 1.6 * * * * Relative 1.4 ***** * Entropy 1.1 ****** * (13.5 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGGCGCG consensus A C G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSGSGMG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:798775-798855 5 7.65e-06 ATTT CGCGCGCG CTTCGAAAAC chrIV:4505265-4505345 58 7.65e-06 AGATGCTCCG CGCGCGCG CAAATTGAAT chrIII:1131710-1131790 54 7.65e-06 GGGGGACCCG CGCGCGCG GGCCCCGTAA chrI:14594542-14594622 59 7.65e-06 CGCTCATTTG CGCGCGCG AAAATCGAAT chrIV:6177554-6177634 34 1.14e-05 TTTAATTATA CGGGGGCG AAGGGCGCAT chrIII:10018172-10018252 62 1.66e-05 TCGACAAAAT CGGGCGAG TAATTCGATA chrX:8918952-8919032 35 2.04e-05 GAGCGCACGT CGCGGGCG TCCTGTAATT chrX:1185651-1185731 19 2.57e-05 AGAAGGAGTG CGCGCGAG AAAACGAGAG chrII:4129626-4129706 26 4.14e-05 TCTTCAGAAA AGCGCGCG GTGATGCAAG chrI:7368445-7368525 66 4.14e-05 TCGGTGTGGT CGGGGGAG CACAGGA chrIII:10583650-10583730 61 4.14e-05 TAAATTCGAC CGGGGGAG CCACTCACTT chrX:3634943-3635023 44 5.03e-05 ACGAGAAAAT CGGGCGGG CCTCAATCTG chrIV:2537908-2537988 8 5.03e-05 ATTCTGT CGGGCGGG GAGCTCCTTG chrV:1313445-1313525 24 5.93e-05 CAATGAAATT AGGGGGCG ACATAATGAG chrII:7795470-7795550 5 5.93e-05 tgat AGGGGGCG GAAAAGAGAC chrX:6419283-6419363 24 6.64e-05 GAAAGAGGGG AGGGCGAG AAAATGTATT chrII:10084647-10084727 54 7.89e-05 GGAAAAGAAG AGCGCGAG GATTTTCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSGSGMG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:798775-798855 7.7e-06 4_[+5]_68 chrIV:4505265-4505345 7.7e-06 57_[+5]_15 chrIII:1131710-1131790 7.7e-06 53_[+5]_19 chrI:14594542-14594622 7.7e-06 58_[+5]_14 chrIV:6177554-6177634 1.1e-05 33_[+5]_39 chrIII:10018172-10018252 1.7e-05 61_[+5]_11 chrX:8918952-8919032 2e-05 34_[+5]_38 chrX:1185651-1185731 2.6e-05 18_[+5]_54 chrII:4129626-4129706 4.1e-05 25_[+5]_47 chrI:7368445-7368525 4.1e-05 65_[+5]_7 chrIII:10583650-10583730 4.1e-05 60_[+5]_12 chrX:3634943-3635023 5e-05 43_[+5]_29 chrIV:2537908-2537988 5e-05 7_[+5]_65 chrV:1313445-1313525 5.9e-05 23_[+5]_49 chrII:7795470-7795550 5.9e-05 4_[+5]_68 chrX:6419283-6419363 6.6e-05 23_[+5]_49 chrII:10084647-10084727 7.9e-05 53_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSGSGMG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGSGSGMG width=8 seqs=17 chrI:798775-798855 ( 5) CGCGCGCG 1 chrIV:4505265-4505345 ( 58) CGCGCGCG 1 chrIII:1131710-1131790 ( 54) CGCGCGCG 1 chrI:14594542-14594622 ( 59) CGCGCGCG 1 chrIV:6177554-6177634 ( 34) CGGGGGCG 1 chrIII:10018172-10018252 ( 62) CGGGCGAG 1 chrX:8918952-8919032 ( 35) CGCGGGCG 1 chrX:1185651-1185731 ( 19) CGCGCGAG 1 chrII:4129626-4129706 ( 26) AGCGCGCG 1 chrI:7368445-7368525 ( 66) CGGGGGAG 1 chrIII:10583650-10583730 ( 61) CGGGGGAG 1 chrX:3634943-3635023 ( 44) CGGGCGGG 1 chrIV:2537908-2537988 ( 8) CGGGCGGG 1 chrV:1313445-1313525 ( 24) AGGGGGCG 1 chrII:7795470-7795550 ( 5) AGGGGGCG 1 chrX:6419283-6419363 ( 24) AGGGCGAG 1 chrII:10084647-10084727 ( 54) AGCGCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSGSGMG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 2.7e+002 2 173 -1073 -1073 -1073 -1073 226 -1073 -1073 115 134 -1073 -1073 -1073 226 -1073 -1073 161 75 -1073 -1073 -1073 226 -1073 28 132 -83 -1073 -1073 -1073 226 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSGSGMG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.7e+002 0.294118 0.705882 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.470588 0.529412 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.647059 0.352941 0.000000 0.000000 0.000000 1.000000 0.000000 0.352941 0.529412 0.117647 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSGSGMG MEME-5 regular expression -------------------------------------------------------------------------------- [CA]G[GC]G[CG]G[CA]G -------------------------------------------------------------------------------- Time 21.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11570117-11570197 3.80e-01 80 chrI:14838040-14838120 7.97e-02 28_[+1(3.54e-05)]_44 chrV:8254072-8254152 3.81e-01 80 chrI:14257211-14257291 1.31e-01 80 chrX:13246825-13246905 1.08e-01 80 chrI:11655434-11655514 9.84e-03 27_[+1(7.04e-05)]_9_[+2(3.33e-05)]_\ 28 chrII:354640-354720 1.55e-01 80 chrII:10021876-10021956 4.84e-01 80 chrIII:989728-989808 3.63e-02 80 chrI:277134-277214 3.46e-01 80 chrI:14594542-14594622 7.71e-04 58_[+5(7.65e-06)]_14 chrIII:1131710-1131790 3.24e-03 51_[+5(7.65e-06)]_21 chrIII:7253827-7253907 2.80e-02 53_[+3(3.23e-05)]_19 chrV:13165410-13165490 2.13e-01 19_[+1(3.54e-05)]_53 chrI:8262995-8263075 5.86e-02 27_[+1(7.04e-05)]_45 chrX:6705343-6705423 3.35e-01 80 chrX:7679999-7680079 5.09e-01 80 chrIII:1731967-1732047 4.50e-02 80 chrIII:9867495-9867575 4.12e-02 38_[+1(3.54e-05)]_34 chrIV:17233697-17233777 3.71e-01 80 chrV:9157773-9157853 1.69e-01 28_[+1(3.54e-05)]_22_[+1(3.54e-05)]_\ 14 chrX:3901521-3901601 1.39e-01 80 chrI:14941723-14941803 1.92e-03 59_[+2(1.37e-05)]_13 chrX:8770461-8770541 6.85e-01 80 chrIV:7542765-7542845 6.74e-02 42_[+1(3.54e-05)]_30 chrX:13876063-13876143 6.15e-02 52_[+3(5.61e-05)]_20 chrI:14279279-14279359 2.72e-03 80 chrIII:4132333-4132413 3.69e-02 80 chrX:12549208-12549288 2.33e-01 80 chrII:8152863-8152943 8.78e-02 36_[+1(3.54e-05)]_36 chrI:10283704-10283784 4.80e-02 61_[+3(5.61e-05)]_11 chrV:8716321-8716401 3.15e-02 80 chrIII:8744157-8744237 3.24e-02 11_[+3(3.23e-05)]_4_[+3(3.23e-05)]_\ 49 chrIV:72932-73012 1.41e-01 80 chrX:12479174-12479254 4.58e-01 80 chrX:3181495-3181575 8.05e-03 26_[+2(7.14e-05)]_46 chrI:10389770-10389850 1.87e-02 80 chrIII:10583650-10583730 3.95e-02 60_[+5(4.14e-05)]_12 chrII:14098479-14098559 1.17e-03 57_[+1(9.66e-05)]_15 chrIV:11431618-11431698 3.66e-02 [+1(3.54e-05)]_72 chrIII:4028215-4028295 4.00e-01 80 chrV:11337028-11337108 1.50e-03 12_[+3(3.23e-05)]_23_[+1(3.54e-05)]_\ 29 chrIV:6363779-6363859 5.84e-02 5_[+3(7.99e-05)]_67 chrI:4930355-4930435 5.47e-02 80 chrX:3051460-3051540 3.60e-01 80 chrII:7795470-7795550 2.74e-05 4_[+5(5.93e-05)]_22_[+4(5.33e-05)]_\ 38 chrV:3452671-3452751 2.41e-02 12_[+2(7.85e-05)]_60 chrIV:1212528-1212608 9.72e-03 80 chrV:13681591-13681671 6.58e-02 80 chrX:16962813-16962893 4.62e-01 80 chrIII:3224244-3224324 1.12e-02 80 chrX:17352251-17352331 9.73e-02 80 chrII:9107546-9107626 2.16e-03 67_[+1(3.54e-05)]_5 chrII:10753833-10753913 1.48e-02 36_[+2(7.14e-05)]_36 chrI:3426008-3426088 8.36e-02 80 chrII:6116844-6116924 9.18e-01 80 chrIV:6177554-6177634 6.76e-03 33_[+5(1.14e-05)]_39 chrI:7368445-7368525 3.67e-03 41_[+3(9.75e-05)]_16_[+5(4.14e-05)]_\ 7 chrV:10816980-10817060 5.33e-02 80 chrIV:5533712-5533792 9.42e-02 56_[+2(7.85e-05)]_16 chrI:7418056-7418136 1.48e-02 38_[+1(9.66e-05)]_34 chrX:3619001-3619081 3.03e-04 24_[+4(2.24e-05)]_4_[+5(9.34e-05)]_\ 36 chrX:15128314-15128394 2.97e-04 4_[+1(3.54e-05)]_57_[+2(7.14e-05)]_\ 3 chrX:9373834-9373914 1.33e-01 80 chrIII:13123641-13123721 8.97e-02 80 chrX:9805596-9805676 4.60e-01 80 chrIII:12130904-12130984 8.14e-03 22_[+4(8.89e-05)]_50 chrX:11328878-11328958 1.04e-01 64_[+1(9.66e-05)]_8 chrIII:2686796-2686876 6.14e-02 80 chrV:12210094-12210174 5.59e-01 80 chrII:4291969-4292049 1.25e-01 80 chrIV:2537908-2537988 3.38e-03 7_[+5(5.03e-05)]_13_[+1(7.04e-05)]_\ 44 chrIII:8737541-8737621 4.92e-02 80 chrX:305235-305315 5.85e-01 80 chrI:9768728-9768808 5.21e-02 18_[+1(7.04e-05)]_54 chrIV:6055015-6055095 1.99e-04 41_[+1(7.04e-05)]_10_[+3(3.23e-05)]_\ 13 chrX:4424420-4424500 8.38e-01 80 chrIV:11723436-11723516 1.68e-01 3_[+3(3.23e-05)]_51_[+3(7.99e-05)]_\ 10 chrV:12701770-12701850 1.31e-01 19_[+1(3.54e-05)]_53 chrIV:12419472-12419552 7.07e-02 80 chrIV:16812260-16812340 8.88e-01 80 chrI:801428-801508 4.82e-01 80 chrIII:11333194-11333274 8.91e-04 24_[+3(7.99e-05)]_30_[+4(1.29e-05)]_\ [+4(1.29e-05)]_2 chrIV:9655714-9655794 1.29e-01 30_[+1(3.54e-05)]_42 chrX:10151099-10151179 4.08e-02 80 chrX:3875877-3875957 4.28e-02 80 chrI:794393-794473 1.30e-01 80 chrI:7885972-7886052 1.45e-01 80 chrII:12711678-12711758 2.25e-01 80 chrV:10721487-10721567 6.80e-01 80 chrII:14470208-14470288 3.45e-01 80 chrIII:8877184-8877264 5.28e-01 80 chrII:10060648-10060728 1.28e-04 24_[+4(7.60e-05)]_2_[+3(3.23e-05)]_\ 24_[+1(3.54e-05)]_6 chrX:16817022-16817102 2.40e-01 80 chrI:11671485-11671565 7.85e-03 57_[+3(9.75e-05)]_15 chrIV:14960204-14960284 3.74e-03 37_[+1(3.54e-05)]_35 chrIV:11717634-11717714 1.73e-02 43_[+1(3.54e-05)]_29 chrV:14854436-14854516 4.30e-01 80 chrII:6493292-6493372 4.04e-01 80 chrV:9483876-9483956 6.40e-02 60_[+3(3.23e-05)]_12 chrX:9803794-9803874 2.29e-03 59_[+2(3.33e-05)]_13 chrI:4222504-4222584 4.67e-02 80 chrII:7594416-7594496 1.96e-01 36_[+1(7.04e-05)]_36 chrV:12747983-12748063 4.10e-02 36_[+2(7.14e-05)]_36 chrIV:10574623-10574703 1.75e-01 38_[+1(9.66e-05)]_34 chrV:1252987-1253067 1.55e-02 80 chrIII:4967389-4967469 5.69e-03 55_[+3(3.23e-05)]_17 chrX:15552179-15552259 2.65e-01 80 chrIII:3414580-3414660 1.39e-02 80 chrI:4795903-4795983 4.20e-02 7_[+1(9.66e-05)]_65 chrII:14938524-14938604 3.97e-01 80 chrIII:2391863-2391943 1.31e-02 40_[+4(1.29e-05)]_32 chrI:14831290-14831370 4.20e-03 23_[+2(7.14e-05)]_49 chrIV:4005298-4005378 4.27e-01 80 chrX:2451292-2451372 3.14e-02 1_[+1(7.04e-05)]_71 chrIV:10191710-10191790 1.98e-01 80 chrIV:4505265-4505345 3.37e-04 55_[+5(7.65e-06)]_5_[+1(7.04e-05)]_\ 4 chrV:16749607-16749687 3.21e-01 44_[+3(5.61e-05)]_28 chrI:9055006-9055086 3.16e-03 55_[+3(3.23e-05)]_17 chrX:4623956-4624036 2.80e-01 80 chrIV:7605562-7605642 5.73e-01 80 chrII:4574846-4574926 5.60e-02 43_[+1(3.54e-05)]_29 chrX:13631457-13631537 3.10e-01 80 chrV:7873122-7873202 2.34e-02 62_[+4(7.60e-05)]_10 chrV:20220757-20220837 4.85e-01 80 chrI:798775-798855 1.73e-02 4_[+5(7.65e-06)]_68 chrX:14694766-14694846 5.81e-01 80 chrIV:563577-563657 3.86e-01 80 chrIII:9886604-9886684 3.60e-02 41_[+2(7.14e-05)]_31 chrIV:9660112-9660192 3.15e-01 80 chrIV:3667944-3668024 3.03e-01 80 chrIII:612054-612134 2.20e-03 12_[+1(7.04e-05)]_60 chrI:5971964-5972044 1.52e-02 30_[+1(7.04e-05)]_28_[+3(5.61e-05)]_\ 6 chrV:12901452-12901532 1.91e-01 80 chrII:8588607-8588687 5.46e-02 18_[+1(7.04e-05)]_54 chrV:7816672-7816752 3.35e-03 16_[+1(7.04e-05)]_33_[+2(7.14e-05)]_\ 15 chrX:5869762-5869842 1.19e-02 47_[+3(3.23e-05)]_25 chrIV:962019-962099 9.83e-02 46_[+3(7.99e-05)]_26 chrIV:5139354-5139434 1.72e-02 19_[+1(3.54e-05)]_53 chrX:6963956-6964036 8.53e-02 80 chrV:7110519-7110599 8.15e-03 6_[+3(3.23e-05)]_66 chrII:8551254-8551334 7.05e-02 80 chrX:6419283-6419363 1.09e-02 23_[+5(6.64e-05)]_49 chrII:7991419-7991499 1.22e-01 80 chrV:1223733-1223813 3.87e-01 80 chrX:6691804-6691884 7.14e-01 80 chrIII:2552538-2552618 1.61e-03 51_[+1(7.04e-05)]_21 chrX:9361235-9361315 1.63e-01 80 chrX:2727814-2727894 6.16e-04 10_[+1(7.04e-05)]_7_[+4(1.29e-05)]_\ 47 chrIV:6366210-6366290 8.81e-02 80 chrX:15321966-15322046 1.91e-02 19_[+1(7.04e-05)]_17_[+3(7.99e-05)]_\ 28 chrX:1185651-1185731 6.10e-05 8_[+2(1.37e-05)]_2_[+5(2.57e-05)]_\ 54 chrV:20652065-20652145 4.07e-01 80 chrX:5131929-5132009 1.27e-01 80 chrIV:2173076-2173156 2.24e-01 80 chrII:12067618-12067698 7.22e-01 80 chrV:10680140-10680220 1.43e-01 20_[+1(7.04e-05)]_52 chrV:14140912-14140992 3.07e-01 80 chrIII:5402568-5402648 2.89e-01 80 chrIII:5902721-5902801 4.92e-02 80 chrIV:10500641-10500721 2.68e-04 1_[+4(3.55e-05)]_71 chrII:10084647-10084727 9.90e-04 8_[+1(7.04e-05)]_37_[+5(7.89e-05)]_\ 19 chrII:7559025-7559105 5.89e-02 80 chrV:1227929-1228009 4.98e-04 25_[+2(3.33e-05)]_7_[+1(7.04e-05)]_\ 32 chrIII:3136774-3136854 6.30e-02 80 chrI:14189008-14189088 9.28e-04 20_[+1(9.66e-05)]_52 chrX:13634273-13634353 6.22e-02 80 chrX:3429302-3429382 5.15e-02 22_[+1(7.04e-05)]_50 chrII:11032969-11033049 4.31e-01 80 chrIII:340163-340243 5.41e-02 80 chrX:8308638-8308718 2.93e-02 80 chrII:12500146-12500226 3.58e-02 41_[+1(7.04e-05)]_31 chrIII:11358433-11358513 3.34e-01 80 chrIV:12773681-12773761 6.47e-02 52_[+1(3.54e-05)]_20 chrIII:10018172-10018252 6.89e-04 61_[+5(1.66e-05)]_11 chrIII:11458084-11458164 2.27e-03 80 chrX:2522822-2522902 1.79e-01 80 chrI:14726020-14726100 2.82e-02 80 chrX:5129603-5129683 5.97e-02 80 chrV:294669-294749 7.26e-01 80 chrIV:16494121-16494201 1.25e-03 80 chrIV:5915332-5915412 1.02e-01 18_[+3(9.75e-05)]_54 chrIV:8626404-8626484 1.45e-01 80 chrIV:10170985-10171065 1.69e-03 23_[+2(3.33e-05)]_49 chrV:11342057-11342137 5.37e-01 80 chrII:11086925-11087005 8.28e-02 80 chrIV:5927946-5928026 2.43e-03 48_[+1(7.04e-05)]_4_[+2(1.37e-05)]_\ 12 chrI:14835025-14835105 2.52e-01 80 chrII:10696200-10696280 7.49e-02 80 chrI:8507025-8507105 7.40e-03 19_[+1(3.54e-05)]_15_[+2(7.14e-05)]_\ 30 chrIII:4103333-4103413 1.03e-01 80 chrIII:6647035-6647115 5.80e-02 80 chrI:2697189-2697269 7.72e-03 12_[+3(3.23e-05)]_23_[+4(5.33e-05)]_\ 29 chrII:10971837-10971917 2.07e-02 80 chrII:10759163-10759243 2.26e-02 80 chrIII:13633987-13634067 1.06e-01 80 chrIII:612925-613005 3.92e-02 25_[+1(3.54e-05)]_47 chrX:8648776-8648856 1.82e-01 80 chrIII:2914212-2914292 1.63e-03 18_[+4(1.29e-05)]_[+4(7.60e-05)]_46 chrIV:12762938-12763018 6.25e-01 80 chrX:15135121-15135201 1.40e-01 80 chrX:4089141-4089221 3.46e-01 80 chrI:4008891-4008971 3.76e-05 19_[+1(3.54e-05)]_21_[+4(8.89e-05)]_\ 12_[+2(7.14e-05)]_4 chrX:3634943-3635023 1.03e-03 5_[+1(3.54e-05)]_30_[+5(5.03e-05)]_\ 29 chrX:4932168-4932248 9.01e-01 80 chrIV:3626637-3626717 1.32e-03 50_[+4(1.29e-05)]_10_[+2(7.14e-05)]_\ 4 chrII:11353614-11353694 3.20e-03 69_[+1(3.54e-05)]_3 chrII:10999284-10999364 1.71e-01 80 chrV:1150399-1150479 3.58e-01 80 chrI:11126458-11126538 3.67e-01 80 chrV:1313445-1313525 7.58e-04 3_[+2(1.37e-05)]_12_[+5(5.93e-05)]_\ 49 chrV:11953784-11953864 2.15e-02 80 chrIII:6310554-6310634 2.07e-01 16_[+2(7.14e-05)]_21_[+2(7.14e-05)]_\ 27 chrV:9911370-9911450 4.76e-03 38_[+4(3.55e-05)]_34 chrX:14959839-14959919 8.15e-02 80 chrX:5723892-5723972 6.07e-03 80 chrX:8918952-8919032 2.77e-03 34_[+5(2.04e-05)]_7_[+1(3.54e-05)]_\ 23 chrX:2926150-2926230 1.92e-01 26_[+2(7.14e-05)]_46 chrIII:5139291-5139371 1.07e-02 19_[+4(1.29e-05)]_53 chrIII:5992228-5992308 5.89e-01 80 chrX:15125600-15125680 1.03e-01 34_[+2(7.14e-05)]_38 chrIV:4052432-4052512 3.97e-03 56_[+4(1.29e-05)]_16 chrIII:3970560-3970640 2.38e-04 48_[+3(3.23e-05)]_24 chrIII:3634322-3634402 2.21e-02 80 chrV:8555769-8555849 4.51e-01 80 chrIV:6065335-6065415 3.45e-01 80 chrIV:13220725-13220805 2.64e-01 80 chrII:8559353-8559433 2.89e-01 80 chrIV:8054114-8054194 3.30e-02 80 chrX:10594822-10594902 1.44e-02 80 chrI:2157280-2157360 8.79e-02 80 chrIV:951728-951808 3.20e-02 80 chrII:4584471-4584551 3.92e-02 43_[+1(9.66e-05)]_29 chrV:20655317-20655397 2.23e-01 80 chrII:4129626-4129706 6.01e-03 25_[+5(4.14e-05)]_47 chrII:73505-73585 4.76e-02 39_[+1(9.66e-05)]_33 chrI:11656560-11656640 9.76e-04 [+3(9.75e-05)]_40_[+2(7.14e-05)]_24 chrIV:5109142-5109222 1.55e-02 60_[+1(3.54e-05)]_12 chrIII:10512725-10512805 2.16e-03 10_[+3(3.23e-05)]_22_[+4(1.29e-05)]_\ 32 chrII:11088290-11088370 4.11e-01 80 chrX:3987196-3987276 6.05e-01 80 chrII:163385-163465 3.08e-02 8_[+1(3.54e-05)]_64 chrX:3202509-3202589 8.25e-02 25_[+3(3.23e-05)]_47 chrX:2550724-2550804 5.65e-01 80 chrI:14725370-14725450 3.25e-02 80 chrX:2730014-2730094 6.26e-02 80 chrX:13201546-13201626 5.26e-01 80 chrX:5515593-5515673 1.05e-03 53_[+1(3.54e-05)]_4_[+5(9.34e-05)]_\ 7 chrII:5947542-5947622 3.69e-02 80 chrX:15548049-15548129 4.18e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************