******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:665339-665419 1.0000 80 chrX:15011720-15011800 1.0000 80 chrI:5311389-5311469 1.0000 80 chrX:17003780-17003860 1.0000 80 chrV:1360374-1360454 1.0000 80 chrIV:7663138-7663218 1.0000 80 chrIV:96180-96260 1.0000 80 chrIII:3668543-3668623 1.0000 80 chrV:5404135-5404215 1.0000 80 chrII:6838393-6838473 1.0000 80 chrI:5589677-5589757 1.0000 80 chrI:3718718-3718798 1.0000 80 chrV:265394-265474 1.0000 80 chrIV:5977424-5977504 1.0000 80 chrX:10219446-10219526 1.0000 80 chrIII:665544-665624 1.0000 80 chrIII:3382041-3382121 1.0000 80 chrX:1181727-1181807 1.0000 80 chrII:873564-873644 1.0000 80 chrII:6706830-6706910 1.0000 80 chrI:6506779-6506859 1.0000 80 chrIII:4063793-4063873 1.0000 80 chrX:17003982-17004062 1.0000 80 chrII:6812681-6812761 1.0000 80 chrX:5512885-5512965 1.0000 80 chrII:401435-401515 1.0000 80 chrI:14346758-14346838 1.0000 80 chrIV:1687302-1687382 1.0000 80 chrX:9735993-9736073 1.0000 80 chrIII:4721792-4721872 1.0000 80 chrI:11589187-11589267 1.0000 80 chrV:16553079-16553159 1.0000 80 chrX:5976739-5976819 1.0000 80 chrI:9846484-9846564 1.0000 80 chrII:98189-98269 1.0000 80 chrIII:3499996-3500076 1.0000 80 chrX:2728465-2728545 1.0000 80 chrIII:2375860-2375940 1.0000 80 chrI:12966592-12966672 1.0000 80 chrV:19723121-19723201 1.0000 80 chrIII:3476346-3476426 1.0000 80 chrIV:3621882-3621962 1.0000 80 chrIV:6958851-6958931 1.0000 80 chrII:2289495-2289575 1.0000 80 chrI:13421197-13421277 1.0000 80 chrIII:5218834-5218914 1.0000 80 chrM:7347-7427 1.0000 80 chrV:11959784-11959864 1.0000 80 chrX:11473495-11473575 1.0000 80 chrV:20879449-20879529 1.0000 80 chrI:5312845-5312925 1.0000 80 chrV:5291334-5291414 1.0000 80 chrV:7261143-7261223 1.0000 80 chrV:12325731-12325811 1.0000 80 chrII:6772511-6772591 1.0000 80 chrV:11933400-11933480 1.0000 80 chrI:2580129-2580209 1.0000 80 chrIII:11459001-11459081 1.0000 80 chrX:12629487-12629567 1.0000 80 chrII:5836497-5836577 1.0000 80 chrX:12404782-12404862 1.0000 80 chrV:265621-265701 1.0000 80 chrIII:8873273-8873353 1.0000 80 chrX:15653730-15653810 1.0000 80 chrM:10854-10934 1.0000 80 chrX:6134746-6134826 1.0000 80 chrX:1064337-1064417 1.0000 80 chrM:8211-8291 1.0000 80 chrII:11979952-11980032 1.0000 80 chrI:4132235-4132315 1.0000 80 chrI:9787762-9787842 1.0000 80 chrM:7146-7226 1.0000 80 chrIII:9882978-9883058 1.0000 80 chrIII:640524-640604 1.0000 80 chrM:6053-6133 1.0000 80 chrI:2487859-2487939 1.0000 80 chrIV:11310790-11310870 1.0000 80 chrI:816060-816140 1.0000 80 chrV:7231015-7231095 1.0000 80 chrI:1175884-1175964 1.0000 80 chrI:14971752-14971832 1.0000 80 chrIII:6297517-6297597 1.0000 80 chrV:12465514-12465594 1.0000 80 chrIII:13484553-13484633 1.0000 80 chrM:2154-2234 1.0000 80 chrV:3587800-3587880 1.0000 80 chrIV:10512094-10512174 1.0000 80 chrI:10026046-10026126 1.0000 80 chrIII:3664416-3664496 1.0000 80 chrIV:9611775-9611855 1.0000 80 chrX:11317358-11317438 1.0000 80 chrIII:11091878-11091958 1.0000 80 chrIV:9316206-9316286 1.0000 80 chrI:8291119-8291199 1.0000 80 chrIII:6141681-6141761 1.0000 80 chrX:2957721-2957801 1.0000 80 chrIII:1133121-1133201 1.0000 80 chrIII:10811006-10811086 1.0000 80 chrX:13632425-13632505 1.0000 80 chrIII:9084468-9084548 1.0000 80 chrI:12571924-12572004 1.0000 80 chrI:308359-308439 1.0000 80 chrM:4633-4713 1.0000 80 chrM:9165-9245 1.0000 80 chrII:6741581-6741661 1.0000 80 chrI:1416011-1416091 1.0000 80 chrI:7772625-7772705 1.0000 80 chrIII:12777257-12777337 1.0000 80 chrIV:5803747-5803827 1.0000 80 chrIV:2998843-2998923 1.0000 80 chrIV:6647646-6647726 1.0000 80 chrII:2570619-2570699 1.0000 80 chrIII:3175111-3175191 1.0000 80 chrI:6252913-6252993 1.0000 80 chrII:9261695-9261775 1.0000 80 chrX:16988520-16988600 1.0000 80 chrIII:10869098-10869178 1.0000 80 chrIII:10856970-10857050 1.0000 80 chrX:4890490-4890570 1.0000 80 chrX:1160702-1160782 1.0000 80 chrIII:12556216-12556296 1.0000 80 chrIII:3437359-3437439 1.0000 80 chrI:933434-933514 1.0000 80 chrV:15520343-15520423 1.0000 80 chrX:3126438-3126518 1.0000 80 chrII:6942193-6942273 1.0000 80 chrI:1598537-1598617 1.0000 80 chrII:5429852-5429932 1.0000 80 chrIV:11635746-11635826 1.0000 80 chrIV:14033166-14033246 1.0000 80 chrII:7025324-7025404 1.0000 80 chrII:7708767-7708847 1.0000 80 chrII:14528349-14528429 1.0000 80 chrIII:10123785-10123865 1.0000 80 chrV:12026954-12027034 1.0000 80 chrM:12380-12460 1.0000 80 chrX:17030672-17030752 1.0000 80 chrII:8137534-8137614 1.0000 80 chrV:4218377-4218457 1.0000 80 chrIII:3210164-3210244 1.0000 80 chrM:1110-1190 1.0000 80 chrI:3873910-3873990 1.0000 80 chrV:18720490-18720570 1.0000 80 chrI:2710640-2710720 1.0000 80 chrIV:10403242-10403322 1.0000 80 chrIII:25681-25761 1.0000 80 chrII:6993002-6993082 1.0000 80 chrX:9296759-9296839 1.0000 80 chrIII:1202356-1202436 1.0000 80 chrI:1823108-1823188 1.0000 80 chrM:3302-3382 1.0000 80 chrII:11328521-11328601 1.0000 80 chrX:9337875-9337955 1.0000 80 chrX:1018629-1018709 1.0000 80 chrIII:535317-535397 1.0000 80 chrV:4964357-4964437 1.0000 80 chrV:15071356-15071436 1.0000 80 chrIV:5974224-5974304 1.0000 80 chrIV:7736825-7736905 1.0000 80 chrV:5849680-5849760 1.0000 80 chrIII:3916794-3916874 1.0000 80 chrI:27031-27111 1.0000 80 chrX:7678662-7678742 1.0000 80 chrIV:16865695-16865775 1.0000 80 chrV:15520557-15520637 1.0000 80 chrX:16928247-16928327 1.0000 80 chrX:6686898-6686978 1.0000 80 chrIV:1981094-1981174 1.0000 80 chrIII:6551707-6551787 1.0000 80 chrX:12688509-12688589 1.0000 80 chrIV:5371027-5371107 1.0000 80 chrX:10396993-10397073 1.0000 80 chrI:7251685-7251765 1.0000 80 chrI:1444173-1444253 1.0000 80 chrIII:8412109-8412189 1.0000 80 chrV:11239332-11239412 1.0000 80 chrV:8631570-8631650 1.0000 80 chrII:6859026-6859106 1.0000 80 chrX:8995564-8995644 1.0000 80 chrM:12581-12661 1.0000 80 chrI:13310280-13310360 1.0000 80 chrIII:11093655-11093735 1.0000 80 chrII:3428373-3428453 1.0000 80 chrI:961316-961396 1.0000 80 chrV:1003907-1003987 1.0000 80 chrV:5592412-5592492 1.0000 80 chrX:3994577-3994657 1.0000 80 chrII:14063127-14063207 1.0000 80 chrI:11323319-11323399 1.0000 80 chrV:20493653-20493733 1.0000 80 chrX:993216-993296 1.0000 80 chrV:13962147-13962227 1.0000 80 chrIII:10811230-10811310 1.0000 80 chrX:15566723-15566803 1.0000 80 chrIV:796675-796755 1.0000 80 chrV:13715468-13715548 1.0000 80 chrV:10174837-10174917 1.0000 80 chrV:6881011-6881091 1.0000 80 chrIV:7230301-7230381 1.0000 80 chrII:14144063-14144143 1.0000 80 chrI:488392-488472 1.0000 80 chrV:7728207-7728287 1.0000 80 chrIII:13293118-13293198 1.0000 80 chrII:5293469-5293549 1.0000 80 chrI:14389040-14389120 1.0000 80 chrV:4731550-4731630 1.0000 80 chrI:10642479-10642559 1.0000 80 chrX:3111142-3111222 1.0000 80 chrIV:16415399-16415479 1.0000 80 chrIII:2576882-2576962 1.0000 80 chrI:11505521-11505601 1.0000 80 chrII:3567795-3567875 1.0000 80 chrV:14855773-14855853 1.0000 80 chrI:8530135-8530215 1.0000 80 chrI:1575743-1575823 1.0000 80 chrV:11039740-11039820 1.0000 80 chrX:8386219-8386299 1.0000 80 chrIII:8250419-8250499 1.0000 80 chrM:4833-4913 1.0000 80 chrX:14115636-14115716 1.0000 80 chrII:4238053-4238133 1.0000 80 chrV:20832722-20832802 1.0000 80 chrIII:888014-888094 1.0000 80 chrIV:14356297-14356377 1.0000 80 chrI:14721585-14721665 1.0000 80 chrV:18710333-18710413 1.0000 80 chrIII:8874242-8874322 1.0000 80 chrI:853258-853338 1.0000 80 chrI:7082703-7082783 1.0000 80 chrII:5390057-5390137 1.0000 80 chrIV:5953138-5953218 1.0000 80 chrIII:11317242-11317322 1.0000 80 chrIV:13695955-13696035 1.0000 80 chrI:14628162-14628242 1.0000 80 chrIV:16946898-16946978 1.0000 80 chrII:8969425-8969505 1.0000 80 chrII:8442497-8442577 1.0000 80 chrIII:7723828-7723908 1.0000 80 chrIV:15289635-15289715 1.0000 80 chrV:6224916-6224996 1.0000 80 chrIV:410664-410744 1.0000 80 chrV:6709201-6709281 1.0000 80 chrII:11676098-11676178 1.0000 80 chrIV:8782288-8782368 1.0000 80 chrX:15189300-15189380 1.0000 80 chrI:1070063-1070143 1.0000 80 chrI:6136600-6136680 1.0000 80 chrV:7776262-7776342 1.0000 80 chrX:8638977-8639057 1.0000 80 chrIII:3540598-3540678 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_unc-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.274 C 0.221 G 0.212 T 0.293 Background letter frequencies (from file dataset with add-one prior applied): A 0.274 C 0.221 G 0.212 T 0.293 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCCWDGGG MEME-1 width = 8 sites = 50 llr = 413 E-value = 7.3e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCWDGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::53:2: pos.-specific C a9a11::: probability G :::13a8a matrix T :1:33::: bits 2.2 * * 2.0 * * * * 1.8 * * * * 1.6 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (11.9 bits) 0.9 *** *** 0.7 *** *** 0.4 *** *** 0.2 **** *** 0.0 -------- Multilevel CCCATGGG consensus TA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCWDGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2957721-2957801 5 5.97e-06 AGTC CCCAGGGG ACCAAATTGT chrIV:3621882-3621962 45 5.97e-06 CCCCGCCTGT CCCAGGGG ACACCGAAAG chrIII:4063793-4063873 6 5.97e-06 TGATT CCCAGGGG GGCTTACTTA chrIII:3382041-3382121 28 5.97e-06 TCCAACTAGT CCCAGGGG ACAATATCCT chrIV:7736825-7736905 34 1.42e-05 TTGTCCAAAT CCCATGGG GAATTGTCAA chrII:11328521-11328601 56 1.42e-05 CGAGTTGGGT CCCATGGG ACATTAGGGG chrIII:6141681-6141761 32 1.42e-05 AACAATATAT CCCATGGG ACAAATCGGA chrIII:5218834-5218914 47 1.42e-05 GATGGGATGT CCCATGGG ATCATAGAAG chrIII:4721792-4721872 29 1.42e-05 CTTATCAAAT CCCATGGG ATCCCCCGAA chrI:5589677-5589757 59 1.42e-05 GGGTCCCATT CCCATGGG ACCCTTCGAA chrIV:96180-96260 42 1.42e-05 CATCTTTATT CCCATGGG ACCTTCTCCC chrX:15011720-15011800 12 1.42e-05 GGCCACTAAT CCCATGGG AATCAACAAC chrIV:10512094-10512174 3 2.20e-05 TT CCCAAGGG ACGTTGGGGG chrIII:6297517-6297597 2 2.20e-05 T CCCAAGGG AATCAAGTGT chrX:9735993-9736073 4 2.20e-05 GTT CCCAAGGG ATATGCTCCT chrV:5404135-5404215 6 2.20e-05 CAATT CCCAAGGG ACTTGAGCTT chrV:1360374-1360454 47 2.20e-05 ATCCACTTTT CCCAAGGG AATTGAAATT chrX:17003780-17003860 5 2.20e-05 GAAA CCCAAGGG AATTGGGTAT chrX:1160702-1160782 29 3.72e-05 CACATCCCAT CCCTTGGG GTGAATGCAT chrIII:2375860-2375940 23 3.72e-05 AACCTTTTTT CCCTTGGG AATTTAAAAT chrIII:665339-665419 55 3.72e-05 CCTGTACCCT CCCTTGGG GACCGCCCGT chrV:7261143-7261223 14 4.54e-05 ACGTTGGAGT CCCTAGGG ACTCCAACAG chrII:6812681-6812761 8 4.54e-05 TAGATGT CCCTAGGG AGAGACGAAA chrX:10219446-10219526 62 4.54e-05 GTATGGAATT CCCTAGGG GATGGTACCC chrI:5311389-5311469 30 4.54e-05 CTTTTCAAAT CCCTAGGG AATTATATAT chrIII:12777257-12777337 36 5.49e-05 GATAACTGCT CCCCGGGG AGCCGTGAAC chrI:308359-308439 44 5.49e-05 TTTTCGTTGT CCCCGGGG AATATTAAAT chrIII:3668543-3668623 71 5.49e-05 GTAAAAAATT CCCCGGGG AA chrII:6838393-6838473 63 6.79e-05 GTGCACATTT CCCCTGGG ACCGAATTAA chrII:873564-873644 71 8.63e-05 CATTCCTTCC CCCGAGGG AA chrX:4890490-4890570 48 1.01e-04 ATGCCAAAAT CCCTCGGG AATATGAGGA chrX:1064337-1064417 57 1.01e-04 CATTAATGGT CCCAGGAG AGACATGAAA chrI:13310280-13310360 11 1.21e-04 TTAAATTGGT CCCAAGAG ATTCCGGAAT chrV:15520557-15520637 26 1.31e-04 CTGCCAGAGT CCCGCGGG ACCACTCGCC chrV:5291334-5291414 6 1.31e-04 GAATT CCCGCGGG ACATCCCCCC chrIV:7663138-7663218 47 1.31e-04 CACACCAATT CCCGCGGG ACTCTCCACT chrII:9261695-9261775 72 1.47e-04 CTAGAGCCAT CCCTGGAG G chrV:5849680-5849760 10 1.70e-04 AGCCGAACT CCCTTGAG AATTAGCAGG chrI:1598537-1598617 50 1.91e-04 AAGCTCGCGC CTCAAGGG ACGCCAAATC chrII:6993002-6993082 23 2.03e-04 ACTATTTCAT CCCCGGAG ACTTGTTCCC chrV:7728207-7728287 73 2.34e-04 ATGCGTTGAG CCCGTGAG chrIII:8412109-8412189 3 2.34e-04 CC CTCTGGGG GGCACATACG chrV:4218377-4218457 16 2.34e-04 CTTCTGATCT CTCTGGGG AGCCCCTACT chrX:16988520-16988600 48 2.34e-04 TGGCATTTGC CTCTGGGG ACAGCCGGTT chrIV:10403242-10403322 43 2.77e-04 GAGTCCTAAT CCGATGGG CTCTCGCCAA chrIV:14033166-14033246 32 2.77e-04 GGACAATCTC CCCCAGAG GGGGTCTTGT chrIII:9084468-9084548 37 2.77e-04 TATCAAGGAG CCGATGGG AGGACAAAGA chrV:19723121-19723201 54 2.77e-04 TTAATTGTCA CCCGAGAG GAGGCATGAC chrIV:5977424-5977504 59 2.77e-04 TATAAGAAGT CTCTTGGG ACACTTCTGG chrV:12465514-12465594 3 3.89e-04 AG CCCAGAGG AGAGCACACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCWDGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2957721-2957801 6e-06 4_[+1]_68 chrIV:3621882-3621962 6e-06 44_[+1]_28 chrIII:4063793-4063873 6e-06 5_[+1]_67 chrIII:3382041-3382121 6e-06 27_[+1]_45 chrIV:7736825-7736905 1.4e-05 33_[+1]_39 chrII:11328521-11328601 1.4e-05 55_[+1]_17 chrIII:6141681-6141761 1.4e-05 31_[+1]_41 chrIII:5218834-5218914 1.4e-05 46_[+1]_26 chrIII:4721792-4721872 1.4e-05 28_[+1]_44 chrI:5589677-5589757 1.4e-05 58_[+1]_14 chrIV:96180-96260 1.4e-05 41_[+1]_31 chrX:15011720-15011800 1.4e-05 11_[+1]_61 chrIV:10512094-10512174 2.2e-05 2_[+1]_70 chrIII:6297517-6297597 2.2e-05 1_[+1]_71 chrX:9735993-9736073 2.2e-05 3_[+1]_69 chrV:5404135-5404215 2.2e-05 5_[+1]_67 chrV:1360374-1360454 2.2e-05 46_[+1]_26 chrX:17003780-17003860 2.2e-05 4_[+1]_68 chrX:1160702-1160782 3.7e-05 28_[+1]_44 chrIII:2375860-2375940 3.7e-05 22_[+1]_50 chrIII:665339-665419 3.7e-05 54_[+1]_18 chrV:7261143-7261223 4.5e-05 13_[+1]_59 chrII:6812681-6812761 4.5e-05 7_[+1]_65 chrX:10219446-10219526 4.5e-05 61_[+1]_11 chrI:5311389-5311469 4.5e-05 29_[+1]_43 chrIII:12777257-12777337 5.5e-05 35_[+1]_37 chrI:308359-308439 5.5e-05 43_[+1]_29 chrIII:3668543-3668623 5.5e-05 70_[+1]_2 chrII:6838393-6838473 6.8e-05 62_[+1]_10 chrII:873564-873644 8.6e-05 70_[+1]_2 chrX:4890490-4890570 0.0001 47_[+1]_25 chrX:1064337-1064417 0.0001 56_[+1]_16 chrI:13310280-13310360 0.00012 10_[+1]_62 chrV:15520557-15520637 0.00013 25_[+1]_47 chrV:5291334-5291414 0.00013 5_[+1]_67 chrIV:7663138-7663218 0.00013 46_[+1]_26 chrII:9261695-9261775 0.00015 71_[+1]_1 chrV:5849680-5849760 0.00017 9_[+1]_63 chrI:1598537-1598617 0.00019 49_[+1]_23 chrII:6993002-6993082 0.0002 22_[+1]_50 chrV:7728207-7728287 0.00023 72_[+1] chrIII:8412109-8412189 0.00023 2_[+1]_70 chrV:4218377-4218457 0.00023 15_[+1]_57 chrX:16988520-16988600 0.00023 47_[+1]_25 chrIV:10403242-10403322 0.00028 42_[+1]_30 chrIV:14033166-14033246 0.00028 31_[+1]_41 chrIII:9084468-9084548 0.00028 36_[+1]_36 chrV:19723121-19723201 0.00028 53_[+1]_19 chrIV:5977424-5977504 0.00028 58_[+1]_14 chrV:12465514-12465594 0.00039 2_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCWDGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCWDGGG width=8 seqs=50 chrX:2957721-2957801 ( 5) CCCAGGGG 1 chrIV:3621882-3621962 ( 45) CCCAGGGG 1 chrIII:4063793-4063873 ( 6) CCCAGGGG 1 chrIII:3382041-3382121 ( 28) CCCAGGGG 1 chrIV:7736825-7736905 ( 34) CCCATGGG 1 chrII:11328521-11328601 ( 56) CCCATGGG 1 chrIII:6141681-6141761 ( 32) CCCATGGG 1 chrIII:5218834-5218914 ( 47) CCCATGGG 1 chrIII:4721792-4721872 ( 29) CCCATGGG 1 chrI:5589677-5589757 ( 59) CCCATGGG 1 chrIV:96180-96260 ( 42) CCCATGGG 1 chrX:15011720-15011800 ( 12) CCCATGGG 1 chrIV:10512094-10512174 ( 3) CCCAAGGG 1 chrIII:6297517-6297597 ( 2) CCCAAGGG 1 chrX:9735993-9736073 ( 4) CCCAAGGG 1 chrV:5404135-5404215 ( 6) CCCAAGGG 1 chrV:1360374-1360454 ( 47) CCCAAGGG 1 chrX:17003780-17003860 ( 5) CCCAAGGG 1 chrX:1160702-1160782 ( 29) CCCTTGGG 1 chrIII:2375860-2375940 ( 23) CCCTTGGG 1 chrIII:665339-665419 ( 55) CCCTTGGG 1 chrV:7261143-7261223 ( 14) CCCTAGGG 1 chrII:6812681-6812761 ( 8) CCCTAGGG 1 chrX:10219446-10219526 ( 62) CCCTAGGG 1 chrI:5311389-5311469 ( 30) CCCTAGGG 1 chrIII:12777257-12777337 ( 36) CCCCGGGG 1 chrI:308359-308439 ( 44) CCCCGGGG 1 chrIII:3668543-3668623 ( 71) CCCCGGGG 1 chrII:6838393-6838473 ( 63) CCCCTGGG 1 chrII:873564-873644 ( 71) CCCGAGGG 1 chrX:4890490-4890570 ( 48) CCCTCGGG 1 chrX:1064337-1064417 ( 57) CCCAGGAG 1 chrI:13310280-13310360 ( 11) CCCAAGAG 1 chrV:15520557-15520637 ( 26) CCCGCGGG 1 chrV:5291334-5291414 ( 6) CCCGCGGG 1 chrIV:7663138-7663218 ( 47) CCCGCGGG 1 chrII:9261695-9261775 ( 72) CCCTGGAG 1 chrV:5849680-5849760 ( 10) CCCTTGAG 1 chrI:1598537-1598617 ( 50) CTCAAGGG 1 chrII:6993002-6993082 ( 23) CCCCGGAG 1 chrV:7728207-7728287 ( 73) CCCGTGAG 1 chrIII:8412109-8412189 ( 3) CTCTGGGG 1 chrV:4218377-4218457 ( 16) CTCTGGGG 1 chrX:16988520-16988600 ( 48) CTCTGGGG 1 chrIV:10403242-10403322 ( 43) CCGATGGG 1 chrIV:14033166-14033246 ( 32) CCCCAGAG 1 chrIII:9084468-9084548 ( 37) CCGATGGG 1 chrV:19723121-19723201 ( 54) CCCGAGAG 1 chrIV:5977424-5977504 ( 59) CTCTTGGG 1 chrV:12465514-12465594 ( 3) CCCAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCWDGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.99899 E= 7.3e-018 -1229 218 -1229 -1229 -1229 203 -1229 -155 -1229 212 -241 -1229 81 -88 -82 -7 13 -147 40 21 -377 -1229 221 -1229 -77 -1229 198 -1229 -1229 -1229 224 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCWDGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 7.3e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.960000 0.040000 0.000000 0.480000 0.120000 0.120000 0.280000 0.300000 0.080000 0.280000 0.340000 0.020000 0.000000 0.980000 0.000000 0.160000 0.000000 0.840000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCWDGGG MEME-1 regular expression -------------------------------------------------------------------------------- CCC[AT][TAG]GGG -------------------------------------------------------------------------------- Time 6.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GYGCGGCG MEME-2 width = 8 sites = 21 llr = 206 E-value = 3.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYGCGGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C :5:a::a: probability G a:a:9a:8 matrix T :4::1::: bits 2.2 ** * 2.0 * ** ** 1.8 * ***** 1.6 * ***** Relative 1.3 * ****** Entropy 1.1 * ****** (14.1 bits) 0.9 * ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGGCG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1981094-1981174 37 4.62e-06 AAATGAAACT GCGCGGCG GGCTTGCGTG chrIV:11310790-11310870 5 4.62e-06 AAGT GCGCGGCG GGCTTGCAGA chrI:4132235-4132315 60 4.62e-06 CAGAATTTCT GCGCGGCG GTGTTGCCGA chrI:14346758-14346838 35 4.62e-06 GGAGAAAAAG GCGCGGCG CCATTGGTTT chrII:4238053-4238133 50 1.08e-05 GCGAAAATGC GTGCGGCG CGTTGCAACT chrX:993216-993296 21 1.08e-05 CATCGAAGGG GTGCGGCG GGTGAGGGAG chrI:11323319-11323399 41 1.08e-05 TGTCAAGTGT GTGCGGCG GTTTGCAAAT chrIII:3916794-3916874 16 1.08e-05 CCTAAAGTGT GTGCGGCG ACTTTGCAAA chrI:3873910-3873990 32 1.08e-05 CATGACTTTC gtgcggcg agattgcgaa chrIV:9316206-9316286 16 1.08e-05 GAATAAAACC GTGCGGCG GAATTGCGAA chrV:13962147-13962227 61 1.67e-05 CATAAACTGC GCGCGGCA ACTGCAAAAA chrIV:2998843-2998923 53 1.67e-05 GGCGGCGCGC GCGCGGCA ACGGGAAAGT chrIV:5371027-5371107 54 2.46e-05 AAATAAAACC GTGCGGCA ACATTGCGAA chrIV:16865695-16865775 22 2.46e-05 GCAAAACCCC GTGCGGCA CAATTGCGTG chrIII:3175111-3175191 50 2.46e-05 TCTTAACTCT GTGCGGCA CCATTGCGGA chrII:3567795-3567875 38 2.91e-05 TGAGCTAACC GGGCGGCG TTGTGACATA chrI:11589187-11589267 9 3.48e-05 CCCCTTCC GAGCGGCG ATACATCAAA chrII:6859026-6859106 1 4.12e-05 . GCGCTGCG TCTATACAGG chrII:5429852-5429932 45 4.12e-05 CGCAAACACC GCGCTGCG GACTTTGCAC chrIV:16946898-16946978 48 5.93e-05 CAAATAGCAC GCGCGCCG CTTGCAAAAC chrV:3587800-3587880 13 5.93e-05 CGAGCGCAAT CCGCGGCG CGCGATTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1981094-1981174 4.6e-06 36_[+2]_36 chrIV:11310790-11310870 4.6e-06 4_[+2]_68 chrI:4132235-4132315 4.6e-06 59_[+2]_13 chrI:14346758-14346838 4.6e-06 34_[+2]_38 chrII:4238053-4238133 1.1e-05 49_[+2]_23 chrX:993216-993296 1.1e-05 20_[+2]_52 chrI:11323319-11323399 1.1e-05 40_[+2]_32 chrIII:3916794-3916874 1.1e-05 15_[+2]_57 chrI:3873910-3873990 1.1e-05 31_[+2]_41 chrIV:9316206-9316286 1.1e-05 15_[+2]_57 chrV:13962147-13962227 1.7e-05 60_[+2]_12 chrIV:2998843-2998923 1.7e-05 52_[+2]_20 chrIV:5371027-5371107 2.5e-05 53_[+2]_19 chrIV:16865695-16865775 2.5e-05 21_[+2]_51 chrIII:3175111-3175191 2.5e-05 49_[+2]_23 chrII:3567795-3567875 2.9e-05 37_[+2]_35 chrI:11589187-11589267 3.5e-05 8_[+2]_64 chrII:6859026-6859106 4.1e-05 [+2]_72 chrII:5429852-5429932 4.1e-05 44_[+2]_28 chrIV:16946898-16946978 5.9e-05 47_[+2]_25 chrV:3587800-3587880 5.9e-05 12_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYGCGGCG width=8 seqs=21 chrIV:1981094-1981174 ( 37) GCGCGGCG 1 chrIV:11310790-11310870 ( 5) GCGCGGCG 1 chrI:4132235-4132315 ( 60) GCGCGGCG 1 chrI:14346758-14346838 ( 35) GCGCGGCG 1 chrII:4238053-4238133 ( 50) GTGCGGCG 1 chrX:993216-993296 ( 21) GTGCGGCG 1 chrI:11323319-11323399 ( 41) GTGCGGCG 1 chrIII:3916794-3916874 ( 16) GTGCGGCG 1 chrI:3873910-3873990 ( 32) GTGCGGCG 1 chrIV:9316206-9316286 ( 16) GTGCGGCG 1 chrV:13962147-13962227 ( 61) GCGCGGCA 1 chrIV:2998843-2998923 ( 53) GCGCGGCA 1 chrIV:5371027-5371107 ( 54) GTGCGGCA 1 chrIV:16865695-16865775 ( 22) GTGCGGCA 1 chrIII:3175111-3175191 ( 50) GTGCGGCA 1 chrII:3567795-3567875 ( 38) GGGCGGCG 1 chrI:11589187-11589267 ( 9) GAGCGGCG 1 chrII:6859026-6859106 ( 1) GCGCTGCG 1 chrII:5429852-5429932 ( 45) GCGCTGCG 1 chrIV:16946898-16946978 ( 48) GCGCGCCG 1 chrV:3587800-3587880 ( 13) CCGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 3.5e-007 -1104 -221 217 -1104 -252 111 -215 55 -1104 -1104 224 -1104 -1104 218 -1104 -1104 -1104 -1104 209 -162 -1104 -221 217 -1104 -1104 218 -1104 -1104 -20 -1104 184 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.5e-007 0.000000 0.047619 0.952381 0.000000 0.047619 0.476190 0.047619 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.904762 0.095238 0.000000 0.047619 0.952381 0.000000 0.000000 1.000000 0.000000 0.000000 0.238095 0.000000 0.761905 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGGCG MEME-2 regular expression -------------------------------------------------------------------------------- G[CT]GCGGC[GA] -------------------------------------------------------------------------------- Time 10.37 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAARAAR MEME-3 width = 8 sites = 44 llr = 360 E-value = 1.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAARAAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 75aa5aa4 pos.-specific C :::::::: probability G 35::5::6 matrix T :::::::: bits 2.2 2.0 1.8 ** ** 1.6 ** ** Relative 1.3 ** ** Entropy 1.1 ******** (11.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAAAG consensus GA G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:1070063-1070143 16 1.47e-05 AGGAGGAGGA AGAAGAag agagagagag chrIV:5974224-5974304 6 1.47e-05 gcaga agaagaag aagcaaaagC chrI:2580129-2580209 71 1.47e-05 GTGTAGATAa agaagaag ca chrX:11473495-11473575 34 1.47e-05 aagaaaaaga agaagaag aagaaggagc chrI:9846484-9846564 73 1.47e-05 GGAATACGAA AGAAGAAG chrI:11589187-11589267 57 1.47e-05 AGGCagaaga agaagaag aaggaagaag chrIII:2576882-2576962 65 3.37e-05 CTTTCTTGGA AGAAAAAG AGGAAGAA chrX:3111142-3111222 50 3.37e-05 AAATGGAAGA AGAAAAAG AAATAGTGAG chrV:5849680-5849760 71 3.37e-05 ATGAGAATTC AGAAAAAG AA chrI:1598537-1598617 35 3.37e-05 CACATGAGAG AGAAAAAG CTCGCGCCTC chrIII:13484553-13484633 64 3.37e-05 AGAAAAAAGA AGAAAAAG ATGGCAGAT chrI:14346758-14346838 27 3.37e-05 TTAATGCGGG AGAAAAAG GCGCGGCGCC chrII:6812681-6812761 33 3.37e-05 AAAAATTAGT AGAAAAAG AGAGATAGAG chrIV:5977424-5977504 14 3.37e-05 AATTTATGTA AGAAAAAG GGAGGAAAGA chrV:20832722-20832802 54 5.28e-05 TATATATAAC AAAAGAAG CAAAACATTA chrIV:7663138-7663218 66 5.28e-05 CTCTCCACTA AAAAGAAG AACCAAA chrII:8969425-8969505 14 1.08e-04 GGAGAGCGCA AGAAGAAA TCGGGAAGTG chrI:14628162-14628242 27 1.08e-04 CAGTTGGAag agaagaaa ttgagagaga chrIV:5953138-5953218 55 1.08e-04 GAAATCAATA GGAAGAAG GCTAGGGAAC chrIII:10811230-10811310 35 1.08e-04 CGTATCTTCT AGAAGAAA ATTTCAAAAA chrIII:9084468-9084548 72 1.08e-04 GGAGATGGAA GGAAGAAG G chrIII:1133121-1133201 24 1.08e-04 GATCCCTCCA AAAAAAAG AGCAAAAAGA chrX:12629487-12629567 21 1.08e-04 CACTGAAATG GGAAGAAG GGACACGAGT chrV:7776262-7776342 33 1.47e-04 GCGAAGACGG AGAAAAAA CGGCTCTTCG chrI:8291119-8291199 13 1.47e-04 CTGTCGAAAC AGAAAAAA GAGGACGAGG chrX:2728465-2728545 57 1.47e-04 GATGAAATGG GGAAAAAG AAAGTGCACC chrV:15071356-15071436 30 1.86e-04 CCCGCCCCGC AAAAGAAA TGTACACTCA chrX:9337875-9337955 34 1.86e-04 AGTACATCGA GAAAGAAG AATAAGGGAC chrII:11979952-11980032 46 1.86e-04 TGGAAATTTT AAAAGAAA ATTGGAATCT chrV:7261143-7261223 33 1.86e-04 CTCCAACAGA GAAAGAAG GGGACTCGCT chrI:3718718-3718798 49 1.86e-04 GAATTCAAAC AAAAGAAA CTCATAAACA chrI:27031-27111 41 2.52e-04 ATTAAAACTT AAAAAAAA CTACAAAATT chrX:1018629-1018709 42 2.52e-04 TATCGATCTG GAAAAAAG TAAACgagag chrV:18720490-18720570 57 2.52e-04 CATAAACCGA AAAAAAAA CATTTTCAAA chrII:7025324-7025404 17 2.52e-04 gcgtgataac gaaaaaag ctttggtcca chrIII:3437359-3437439 11 2.52e-04 ttttttTGGT GAAAAAAG ATGAAACTGA chrIII:12556216-12556296 46 2.52e-04 CTTGAAAAAC AAAAAAAA AAAACCAAGA chrIII:3175111-3175191 19 2.52e-04 AAATCCCCCA AAAAAAAA TAAATCCACA chrII:2570619-2570699 47 2.52e-04 AAAAACCGGC AAAAAAAA TCTTTAAAAA chrIV:6647646-6647726 8 2.52e-04 GTTGGCT GGAAGAAA AATTAGCTTG chrIII:11459001-11459081 1 2.52e-04 . aaaaaaaa attctcggaa chrX:17003780-17003860 72 2.90e-04 ACGGCCCAAT GAAAGAAA T chrII:6942193-6942273 34 3.14e-04 GGGGAAGAGC GAAAAAAA TTTCAGATTG chrV:265621-265701 25 3.14e-04 GTTGCACATT GAAAAAAA CTTTTTTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1070063-1070143 1.5e-05 15_[+3]_57 chrIV:5974224-5974304 1.5e-05 5_[+3]_67 chrI:2580129-2580209 1.5e-05 70_[+3]_2 chrX:11473495-11473575 1.5e-05 33_[+3]_39 chrI:9846484-9846564 1.5e-05 72_[+3] chrI:11589187-11589267 1.5e-05 56_[+3]_16 chrIII:2576882-2576962 3.4e-05 64_[+3]_8 chrX:3111142-3111222 3.4e-05 49_[+3]_23 chrV:5849680-5849760 3.4e-05 70_[+3]_2 chrI:1598537-1598617 3.4e-05 34_[+3]_38 chrIII:13484553-13484633 3.4e-05 63_[+3]_9 chrI:14346758-14346838 3.4e-05 26_[+3]_46 chrII:6812681-6812761 3.4e-05 32_[+3]_40 chrIV:5977424-5977504 3.4e-05 13_[+3]_59 chrV:20832722-20832802 5.3e-05 53_[+3]_19 chrIV:7663138-7663218 5.3e-05 65_[+3]_7 chrII:8969425-8969505 0.00011 13_[+3]_59 chrI:14628162-14628242 0.00011 26_[+3]_46 chrIV:5953138-5953218 0.00011 54_[+3]_18 chrIII:10811230-10811310 0.00011 34_[+3]_38 chrIII:9084468-9084548 0.00011 71_[+3]_1 chrIII:1133121-1133201 0.00011 23_[+3]_49 chrX:12629487-12629567 0.00011 20_[+3]_52 chrV:7776262-7776342 0.00015 32_[+3]_40 chrI:8291119-8291199 0.00015 12_[+3]_60 chrX:2728465-2728545 0.00015 56_[+3]_16 chrV:15071356-15071436 0.00019 29_[+3]_43 chrX:9337875-9337955 0.00019 33_[+3]_39 chrII:11979952-11980032 0.00019 45_[+3]_27 chrV:7261143-7261223 0.00019 32_[+3]_40 chrI:3718718-3718798 0.00019 48_[+3]_24 chrI:27031-27111 0.00025 40_[+3]_32 chrX:1018629-1018709 0.00025 41_[+3]_31 chrV:18720490-18720570 0.00025 56_[+3]_16 chrII:7025324-7025404 0.00025 16_[+3]_56 chrIII:3437359-3437439 0.00025 10_[+3]_62 chrIII:12556216-12556296 0.00025 45_[+3]_27 chrIII:3175111-3175191 0.00025 18_[+3]_54 chrII:2570619-2570699 0.00025 46_[+3]_26 chrIV:6647646-6647726 0.00025 7_[+3]_65 chrIII:11459001-11459081 0.00025 [+3]_72 chrX:17003780-17003860 0.00029 71_[+3]_1 chrII:6942193-6942273 0.00031 33_[+3]_39 chrV:265621-265701 0.00031 24_[+3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAARAAR width=8 seqs=44 chrI:1070063-1070143 ( 16) AGAAGAAG 1 chrIV:5974224-5974304 ( 6) AGAAGAAG 1 chrI:2580129-2580209 ( 71) AGAAGAAG 1 chrX:11473495-11473575 ( 34) AGAAGAAG 1 chrI:9846484-9846564 ( 73) AGAAGAAG 1 chrI:11589187-11589267 ( 57) AGAAGAAG 1 chrIII:2576882-2576962 ( 65) AGAAAAAG 1 chrX:3111142-3111222 ( 50) AGAAAAAG 1 chrV:5849680-5849760 ( 71) AGAAAAAG 1 chrI:1598537-1598617 ( 35) AGAAAAAG 1 chrIII:13484553-13484633 ( 64) AGAAAAAG 1 chrI:14346758-14346838 ( 27) AGAAAAAG 1 chrII:6812681-6812761 ( 33) AGAAAAAG 1 chrIV:5977424-5977504 ( 14) AGAAAAAG 1 chrV:20832722-20832802 ( 54) AAAAGAAG 1 chrIV:7663138-7663218 ( 66) AAAAGAAG 1 chrII:8969425-8969505 ( 14) AGAAGAAA 1 chrI:14628162-14628242 ( 27) AGAAGAAA 1 chrIV:5953138-5953218 ( 55) GGAAGAAG 1 chrIII:10811230-10811310 ( 35) AGAAGAAA 1 chrIII:9084468-9084548 ( 72) GGAAGAAG 1 chrIII:1133121-1133201 ( 24) AAAAAAAG 1 chrX:12629487-12629567 ( 21) GGAAGAAG 1 chrV:7776262-7776342 ( 33) AGAAAAAA 1 chrI:8291119-8291199 ( 13) AGAAAAAA 1 chrX:2728465-2728545 ( 57) GGAAAAAG 1 chrV:15071356-15071436 ( 30) AAAAGAAA 1 chrX:9337875-9337955 ( 34) GAAAGAAG 1 chrII:11979952-11980032 ( 46) AAAAGAAA 1 chrV:7261143-7261223 ( 33) GAAAGAAG 1 chrI:3718718-3718798 ( 49) AAAAGAAA 1 chrI:27031-27111 ( 41) AAAAAAAA 1 chrX:1018629-1018709 ( 42) GAAAAAAG 1 chrV:18720490-18720570 ( 57) AAAAAAAA 1 chrII:7025324-7025404 ( 17) GAAAAAAG 1 chrIII:3437359-3437439 ( 11) GAAAAAAG 1 chrIII:12556216-12556296 ( 46) AAAAAAAA 1 chrIII:3175111-3175191 ( 19) AAAAAAAA 1 chrII:2570619-2570699 ( 47) AAAAAAAA 1 chrIV:6647646-6647726 ( 8) GGAAGAAA 1 chrIII:11459001-11459081 ( 1) AAAAAAAA 1 chrX:17003780-17003860 ( 72) GAAAGAAA 1 chrII:6942193-6942273 ( 34) GAAAAAAA 1 chrV:265621-265701 ( 25) GAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 1.5e-007 136 -1210 48 -1210 73 -1210 136 -1210 187 -1210 -1210 -1210 187 -1210 -1210 -1210 93 -1210 117 -1210 187 -1210 -1210 -1210 187 -1210 -1210 -1210 58 -1210 148 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.5e-007 0.704545 0.000000 0.295455 0.000000 0.454545 0.000000 0.545455 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.522727 0.000000 0.477273 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.409091 0.000000 0.590909 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAAR MEME-3 regular expression -------------------------------------------------------------------------------- [AG][GA]AA[AG]AA[GA] -------------------------------------------------------------------------------- Time 15.31 secs. ******************************************************************************** ******************************************************************************** MOTIF YHTTTTTC MEME-4 width = 8 sites = 112 llr = 711 E-value = 1.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YHTTTTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 12:::::: pos.-specific C 5422:2:7 probability G :::::::1 matrix T 4488a8a2 bits 2.2 2.0 1.8 * * 1.6 * * Relative 1.3 * * Entropy 1.1 ***** (9.2 bits) 0.9 ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTTTTC consensus TT T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHTTTTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6551707-6551787 8 2.33e-05 TTGCTCC CCTTTTTC GTATCTCCCC chrX:16988520-16988600 27 2.33e-05 TGGCCCCCCG CCTTTTTC GGCTGGCATT chrI:308359-308439 31 2.33e-05 TTGCCCCCCC CCTTTTTC GTTGTCCCCG chrX:6134746-6134826 42 2.33e-05 CCACTGGCAC CCTTTTTC GATGTCACTT chrX:2728465-2728545 73 2.33e-05 AGAAAGTGCA CCTTTTTC chrIII:4063793-4063873 31 2.33e-05 TTACTTGCCG CCTTTTTC CTCCTTCCGC chrV:20493653-20493733 61 5.42e-05 CTGAAAATCG CTTTTTTC ATAATTTTCC chrIII:1133121-1133201 69 5.42e-05 CGGCACAAAA CTTTTTTC ACCC chrV:265621-265701 33 5.42e-05 TTGAAAAAAA CTTTTTTC GGGTTTTTTA chrX:12629487-12629567 67 5.42e-05 CGCAGTGCCT CTTTTTTC GCTGGG chrIII:11459001-11459081 39 5.42e-05 caaaaattcc cttttttc tcatCGACCA chrV:12325731-12325811 30 5.42e-05 CTCTTTCTTC CTTTTTTC GGTGCAAAAT chrIV:1687302-1687382 23 5.42e-05 TTTTTTCGTT CTTTTTTC GTTTTTTACA chrIV:410664-410744 53 8.51e-05 GTTTTAAATA TCTTTTTC TCAATTATTA chrIII:888014-888094 4 8.51e-05 GTT TCTTTTTC TTCTCTCTTT chrX:7678662-7678742 24 8.51e-05 TCCTTTTCCT TCTTTTTC ATGCTTCTTT chrIV:5974224-5974304 24 8.51e-05 aagcaaaagC TCTTTTTC TCTATTTCTC chrV:15520343-15520423 10 8.51e-05 TTTTCTCAT TCTTTTTC TTCTCTCCTG chrIII:13484553-13484633 43 8.51e-05 GAAGATATCC TCTTTTTC GGAAGAAAAA chrV:12465514-12465594 46 8.51e-05 TCTTTTCATA TCTTTTTC TGTTTCTCTC chrI:14971752-14971832 2 8.51e-05 T TCTTTTTC TTCCTATGTG chrX:1064337-1064417 24 8.51e-05 ctttctctct tctttttc actttctttc chrIV:6958851-6958931 34 8.51e-05 tgtttttgct tctttttc tttcCTCACT chrIII:8412109-8412189 49 1.26e-04 CTCCCATTTC TTTTTTTC TCTCACAATA chrM:12380-12460 25 1.26e-04 ATTTACTATA TTTTTTTC TAGCTTAGCA chrII:6706830-6706910 18 1.26e-04 TTCCAAATGT TTTTTTTC TTGAGTTGCC chrV:5404135-5404215 64 1.26e-04 CCCTAAACTT TTTTTTTC CACGTTTTC chrV:4218377-4218457 53 1.55e-04 AGATCCGCCC CATTTTTC GCATCTTTCC chrI:10026046-10026126 11 1.55e-04 TTCTCCGGAA CATTTTTC CCCAGTGGGA chrI:1175884-1175964 35 1.55e-04 CATATTTTTT CATTTTTC GACCGTTTTT chrII:98189-98269 16 1.55e-04 TATTTCGAAT CATTTTTC AGTAAAAATG chrIV:15289635-15289715 16 1.73e-04 CTTATTCTCT CCTTTCTC TCTACCCCTT chrI:6252913-6252993 23 1.73e-04 TTTTAGTTCC CCTTTCTC GAATTTCTGT chrV:6881011-6881091 48 2.28e-04 ttgttttcCA CCCTTTTC CAATTGGCAG chrV:4964357-4964437 26 2.28e-04 GGGTCATGAT TATTTTTC ATTGAGCTCT chrV:18720490-18720570 12 2.28e-04 GAAGACCTTC TATTTTTC TTATTATTTT chrIII:10123785-10123865 5 2.28e-04 GCTC CCCTTTTC GTGGGGCCTC chrIV:5803747-5803827 52 2.28e-04 ATTCATTACC CCCTTTTC ACTTTGAACG chrV:3587800-3587880 70 2.28e-04 GTTTTTCACC TATTTTTC CGC chrV:16553079-16553159 23 2.28e-04 CTCGCAGATC CCCTTTTC GCAGATCCCC chrIV:8782288-8782368 7 3.00e-04 TAGCGT CTTTTCTC TGACCTCCAT chrIII:3210164-3210244 72 3.00e-04 CATTAGTTAG CCTTTTTT T chrIII:2375860-2375940 15 3.00e-04 GCACACCAAA CCTTTTTT CCCTTGGGAA chrX:13632425-13632505 41 3.47e-04 CTTGGAATCA CTCTTTTC TCACTTGACA chrV:5291334-5291414 26 3.47e-04 ATCCCCCCTA CTCTTTTC CATTTTATTC chrI:13421197-13421277 42 3.47e-04 TAAGCTCCGC CTCTTTTC TCCGGGTTTC chrI:6506779-6506859 43 3.47e-04 CTCTTCGTTA CTCTTTTC ACAGCCTTTA chrIV:96180-96260 6 3.47e-04 TGTAA TCTTTCTC CAAAAAAGTG chrIV:5953138-5953218 35 3.93e-04 AGACGTCCCA CTTCTTTC TAGAAATCAA chrX:14115636-14115716 15 4.58e-04 CCCAGCCCCT CTTTTTTT GTTATAGGCA chrV:15071356-15071436 58 4.58e-04 TTTTGTTGTA tctctttc tctaattctc chrX:5976739-5976819 52 4.58e-04 CCTTATCCGC TCTCTTTC ATCCTTTCGT chrI:14346758-14346838 70 4.58e-04 TCTCTCTCAT CTTTTTTT TTG chrI:6136600-6136680 72 5.30e-04 ATTGGGCTCA TCTTTTTT G chrII:8969425-8969505 53 5.30e-04 GTTCATGACG TCTTTTTT AATGTGTAAA chrIII:8873273-8873353 23 5.30e-04 CACGTCTTCT TCTTTTTT GCTTTGTGGG chrI:9846484-9846564 10 5.30e-04 tccacactc tctttttt actctcACAT chrI:488392-488472 66 6.05e-04 TTTGCTTGCG CATTTCTC GTGCGCG chrX:8995564-8995644 62 6.05e-04 CTCCCGCATC TTCTTTTC GGAGCAAGCT chrIII:640524-640604 70 6.05e-04 CGTTGTTCCT CATTTCTC CAA chrII:2289495-2289575 56 6.05e-04 TAAATGGAGC TTCTTTTC GGATTTTCTT chrI:1444173-1444253 48 6.57e-04 CCCCAGCGCA CACTTTTC ACATTTCCCG chrIV:1981094-1981174 67 6.57e-04 GCTCCCCGCC CACTTTTC CGTGCC chrI:7772625-7772705 27 6.57e-04 ATTGAACGCA TTTCTTTC AAACTTTATT chrII:8442497-8442577 56 7.34e-04 TTGTAGAATA TTTTTTTT ACATATTTAT chrX:8386219-8386299 62 7.34e-04 GGGTCAAATT TTTTTTTT TTGTAATGGA chrI:1575743-1575823 66 7.34e-04 TTTGTCGGGG TTTTTTTT GGTTGCA chrIII:1202356-1202436 53 7.34e-04 TTATGGATTT TTTTTTTT TGATAATTTT chrIII:6297517-6297597 39 7.34e-04 AAACTCCGCC CATCTTTC CACCCATCCC chrV:20879449-20879529 72 7.34e-04 CCTATTTCAA TTTTTTTT A chrII:6838393-6838473 7 7.34e-04 CTCAAT CATCTTTC ACTTTCCTTC chrX:8638977-8639057 21 8.30e-04 CCCCCTAAAT ACTTTTTC CTATTTTAAA chrIV:16415399-16415479 53 8.30e-04 ATTTTAGGCA ACTTTTTC AGTAGAAATT chrI:14389040-14389120 24 8.30e-04 CTATTCCCCG CTTTTTTG CGCGGAAGAG chrV:10174837-10174917 56 8.30e-04 GATGACGTCG CTTTTTTG CCTCTTCTGA chrI:1823108-1823188 60 8.30e-04 TTATCTTAAA CTTTTTTG CTAAAAATAT chrII:7025324-7025404 59 8.30e-04 taatttcgga catttttt atatgcatca chrIII:12777257-12777337 7 8.30e-04 TGACAG CTTTTTTG TTTGGGCATG chrX:15189300-15189380 54 9.02e-04 GTTGCAGAGA TCTTTTTG CCTCCCCTCA chrIII:7723828-7723908 70 9.02e-04 GAACGAGTTT TATTTCTC GTT chrIII:25681-25761 7 9.02e-04 GTCTTC TATTTCTC TGCGTCTCTC chrM:7146-7226 59 9.02e-04 AATTTTAGGA TCTTTTTG TTGTGTGTTT chrIV:5977424-5977504 37 9.02e-04 AAAGACACGG CCCTTCTC GTCTTATAAG chrV:7231015-7231095 56 9.44e-04 CGCACGAATT CCTCTCTC AGTTTTTGTT chrIII:665544-665624 33 9.44e-04 TTCCCATCTT CCTCTCTC CGTCTCACGA chrIII:2576882-2576962 54 1.05e-03 AGGGTTCGAG CCTTTCTT GGAAGAAAAA chrIII:13293118-13293198 42 1.05e-03 tcgtaagggg attttttc gtaaggaacg chrX:3994577-3994657 3 1.05e-03 CC TATCTTTC GTCGCTGCCA chrI:27031-27111 18 1.18e-03 ACTTATAATG TATTTTTT CTTCCATTAA chrII:7708767-7708847 37 1.18e-03 ACGAGTGTTT TATTTTTT AGCCCAAGGC chrIII:3437359-3437439 1 1.18e-03 . ttttttTG GTGAAAAAAG chrIV:14356297-14356377 47 1.27e-03 CTTATTGAGC TCCTTCTC CCTCTGTCTC chrX:12404782-12404862 56 1.27e-03 TCTGACATCT TCCTTCTC AATTTATCAA chrV:7728207-7728287 6 1.33e-03 TCTTG CTCCTTTC ACTTTCATCG chrX:15566723-15566803 38 1.33e-03 ACACGTCTTG CTTTTCTT CTTCTGCTTT chrIV:14033166-14033246 3 1.33e-03 TC TCTCTCTC CAGAGAATCT chrI:933434-933514 32 1.33e-03 ATTGTGGATT CTCCTTTC TGATAATATT chrI:5589677-5589757 9 1.33e-03 TCTTCCGA CTCCTTTC TATCATATCT chrII:14144063-14144143 18 1.41e-03 GCTTCCTTGT CTCTTTTT ACAATATATA chrIII:3668543-3668623 23 1.41e-03 TATGGTGTAT TCTTTCTT GTTTTTATAA chrX:3111142-3111222 13 1.55e-03 ACGAGCCAGT AATTTTTC TGAATCGATG chrIV:16865695-16865775 64 1.55e-03 CCCGCCCAAG AATTTTTC CTCGATTTC chrII:401435-401515 1 1.55e-03 . cttcttTT ACTCCGTAAC chrV:15520557-15520637 59 1.67e-03 AAAAATGGCG TATTTTTG AGAGGAGAAA chrX:3126438-3126518 34 1.67e-03 CAAATCAATA TATTTTTG CTGCTGCGCC chrII:5836497-5836577 15 1.67e-03 TCTATCGAAC TATTTTTG ATTAAGAAAA chrX:17003982-17004062 67 1.67e-03 CCTTCTGCCG TTTCTCTC TTGGTT chrV:20832722-20832802 6 1.77e-03 CATAG TTTTTCTT ATTGAAATAT chrM:2154-2234 49 1.77e-03 ATGAAATTGC TTTTTCTT TATATGTTTT chrX:11317358-11317438 27 1.90e-03 TCGGTAAGTC ACTTTCTC ATCTGATATA chrIV:2998843-2998923 14 2.15e-03 TTTTCCCCCC ACTCTTTC CATTTTCGAT chrX:9337875-9337955 51 2.72e-03 GAATAAGGGA CCCCTTTT GCGTCGCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHTTTTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6551707-6551787 2.3e-05 7_[+4]_65 chrX:16988520-16988600 2.3e-05 26_[+4]_46 chrI:308359-308439 2.3e-05 30_[+4]_42 chrX:6134746-6134826 2.3e-05 41_[+4]_31 chrX:2728465-2728545 2.3e-05 72_[+4] chrIII:4063793-4063873 2.3e-05 30_[+4]_42 chrV:20493653-20493733 5.4e-05 60_[+4]_12 chrIII:1133121-1133201 5.4e-05 68_[+4]_4 chrV:265621-265701 5.4e-05 32_[+4]_40 chrX:12629487-12629567 5.4e-05 66_[+4]_6 chrIII:11459001-11459081 5.4e-05 38_[+4]_34 chrV:12325731-12325811 5.4e-05 29_[+4]_43 chrIV:1687302-1687382 5.4e-05 22_[+4]_50 chrIV:410664-410744 8.5e-05 52_[+4]_20 chrIII:888014-888094 8.5e-05 3_[+4]_69 chrX:7678662-7678742 8.5e-05 23_[+4]_49 chrIV:5974224-5974304 8.5e-05 23_[+4]_49 chrV:15520343-15520423 8.5e-05 9_[+4]_63 chrIII:13484553-13484633 8.5e-05 42_[+4]_30 chrV:12465514-12465594 8.5e-05 45_[+4]_27 chrI:14971752-14971832 8.5e-05 1_[+4]_71 chrX:1064337-1064417 8.5e-05 23_[+4]_49 chrIV:6958851-6958931 8.5e-05 33_[+4]_39 chrIII:8412109-8412189 0.00013 48_[+4]_24 chrM:12380-12460 0.00013 24_[+4]_48 chrII:6706830-6706910 0.00013 17_[+4]_55 chrV:5404135-5404215 0.00013 63_[+4]_9 chrV:4218377-4218457 0.00015 52_[+4]_20 chrI:10026046-10026126 0.00015 10_[+4]_62 chrI:1175884-1175964 0.00015 34_[+4]_38 chrII:98189-98269 0.00015 15_[+4]_57 chrIV:15289635-15289715 0.00017 15_[+4]_57 chrI:6252913-6252993 0.00017 22_[+4]_50 chrV:6881011-6881091 0.00023 47_[+4]_25 chrV:4964357-4964437 0.00023 25_[+4]_47 chrV:18720490-18720570 0.00023 11_[+4]_61 chrIII:10123785-10123865 0.00023 4_[+4]_68 chrIV:5803747-5803827 0.00023 51_[+4]_21 chrV:3587800-3587880 0.00023 69_[+4]_3 chrV:16553079-16553159 0.00023 22_[+4]_50 chrIV:8782288-8782368 0.0003 6_[+4]_66 chrIII:3210164-3210244 0.0003 71_[+4]_1 chrIII:2375860-2375940 0.0003 14_[+4]_58 chrX:13632425-13632505 0.00035 40_[+4]_32 chrV:5291334-5291414 0.00035 25_[+4]_47 chrI:13421197-13421277 0.00035 41_[+4]_31 chrI:6506779-6506859 0.00035 42_[+4]_30 chrIV:96180-96260 0.00035 5_[+4]_67 chrIV:5953138-5953218 0.00039 34_[+4]_38 chrX:14115636-14115716 0.00046 14_[+4]_58 chrV:15071356-15071436 0.00046 57_[+4]_15 chrX:5976739-5976819 0.00046 51_[+4]_21 chrI:14346758-14346838 0.00046 69_[+4]_3 chrI:6136600-6136680 0.00053 71_[+4]_1 chrII:8969425-8969505 0.00053 52_[+4]_20 chrIII:8873273-8873353 0.00053 22_[+4]_50 chrI:9846484-9846564 0.00053 9_[+4]_63 chrI:488392-488472 0.0006 65_[+4]_7 chrX:8995564-8995644 0.0006 61_[+4]_11 chrIII:640524-640604 0.0006 69_[+4]_3 chrII:2289495-2289575 0.0006 55_[+4]_17 chrI:1444173-1444253 0.00066 47_[+4]_25 chrIV:1981094-1981174 0.00066 66_[+4]_6 chrI:7772625-7772705 0.00066 26_[+4]_46 chrII:8442497-8442577 0.00073 55_[+4]_17 chrX:8386219-8386299 0.00073 61_[+4]_11 chrI:1575743-1575823 0.00073 65_[+4]_7 chrIII:1202356-1202436 0.00073 52_[+4]_20 chrIII:6297517-6297597 0.00073 38_[+4]_34 chrV:20879449-20879529 0.00073 71_[+4]_1 chrII:6838393-6838473 0.00073 6_[+4]_66 chrX:8638977-8639057 0.00083 20_[+4]_52 chrIV:16415399-16415479 0.00083 52_[+4]_20 chrI:14389040-14389120 0.00083 23_[+4]_49 chrV:10174837-10174917 0.00083 55_[+4]_17 chrI:1823108-1823188 0.00083 59_[+4]_13 chrII:7025324-7025404 0.00083 58_[+4]_14 chrIII:12777257-12777337 0.00083 6_[+4]_66 chrX:15189300-15189380 0.0009 53_[+4]_19 chrIII:7723828-7723908 0.0009 69_[+4]_3 chrIII:25681-25761 0.0009 6_[+4]_66 chrM:7146-7226 0.0009 58_[+4]_14 chrIV:5977424-5977504 0.0009 36_[+4]_36 chrV:7231015-7231095 0.00094 55_[+4]_17 chrIII:665544-665624 0.00094 32_[+4]_40 chrIII:2576882-2576962 0.001 53_[+4]_19 chrIII:13293118-13293198 0.001 41_[+4]_31 chrX:3994577-3994657 0.001 2_[+4]_70 chrI:27031-27111 0.0012 17_[+4]_55 chrII:7708767-7708847 0.0012 36_[+4]_36 chrIII:3437359-3437439 0.0012 [+4]_72 chrIV:14356297-14356377 0.0013 46_[+4]_26 chrX:12404782-12404862 0.0013 55_[+4]_17 chrV:7728207-7728287 0.0013 5_[+4]_67 chrX:15566723-15566803 0.0013 37_[+4]_35 chrIV:14033166-14033246 0.0013 2_[+4]_70 chrI:933434-933514 0.0013 31_[+4]_41 chrI:5589677-5589757 0.0013 8_[+4]_64 chrII:14144063-14144143 0.0014 17_[+4]_55 chrIII:3668543-3668623 0.0014 22_[+4]_50 chrX:3111142-3111222 0.0015 12_[+4]_60 chrIV:16865695-16865775 0.0015 63_[+4]_9 chrII:401435-401515 0.0015 [+4]_72 chrV:15520557-15520637 0.0017 58_[+4]_14 chrX:3126438-3126518 0.0017 33_[+4]_39 chrII:5836497-5836577 0.0017 14_[+4]_58 chrX:17003982-17004062 0.0017 66_[+4]_6 chrV:20832722-20832802 0.0018 5_[+4]_67 chrM:2154-2234 0.0018 48_[+4]_24 chrX:11317358-11317438 0.0019 26_[+4]_46 chrIV:2998843-2998923 0.0022 13_[+4]_59 chrX:9337875-9337955 0.0027 50_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHTTTTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YHTTTTTC width=8 seqs=112 chrIII:6551707-6551787 ( 8) CCTTTTTC 1 chrX:16988520-16988600 ( 27) CCTTTTTC 1 chrI:308359-308439 ( 31) CCTTTTTC 1 chrX:6134746-6134826 ( 42) CCTTTTTC 1 chrX:2728465-2728545 ( 73) CCTTTTTC 1 chrIII:4063793-4063873 ( 31) CCTTTTTC 1 chrV:20493653-20493733 ( 61) CTTTTTTC 1 chrIII:1133121-1133201 ( 69) CTTTTTTC 1 chrV:265621-265701 ( 33) CTTTTTTC 1 chrX:12629487-12629567 ( 67) CTTTTTTC 1 chrIII:11459001-11459081 ( 39) CTTTTTTC 1 chrV:12325731-12325811 ( 30) CTTTTTTC 1 chrIV:1687302-1687382 ( 23) CTTTTTTC 1 chrIV:410664-410744 ( 53) TCTTTTTC 1 chrIII:888014-888094 ( 4) TCTTTTTC 1 chrX:7678662-7678742 ( 24) TCTTTTTC 1 chrIV:5974224-5974304 ( 24) TCTTTTTC 1 chrV:15520343-15520423 ( 10) TCTTTTTC 1 chrIII:13484553-13484633 ( 43) TCTTTTTC 1 chrV:12465514-12465594 ( 46) TCTTTTTC 1 chrI:14971752-14971832 ( 2) TCTTTTTC 1 chrX:1064337-1064417 ( 24) TCTTTTTC 1 chrIV:6958851-6958931 ( 34) TCTTTTTC 1 chrIII:8412109-8412189 ( 49) TTTTTTTC 1 chrM:12380-12460 ( 25) TTTTTTTC 1 chrII:6706830-6706910 ( 18) TTTTTTTC 1 chrV:5404135-5404215 ( 64) TTTTTTTC 1 chrV:4218377-4218457 ( 53) CATTTTTC 1 chrI:10026046-10026126 ( 11) CATTTTTC 1 chrI:1175884-1175964 ( 35) CATTTTTC 1 chrII:98189-98269 ( 16) CATTTTTC 1 chrIV:15289635-15289715 ( 16) CCTTTCTC 1 chrI:6252913-6252993 ( 23) CCTTTCTC 1 chrV:6881011-6881091 ( 48) CCCTTTTC 1 chrV:4964357-4964437 ( 26) TATTTTTC 1 chrV:18720490-18720570 ( 12) TATTTTTC 1 chrIII:10123785-10123865 ( 5) CCCTTTTC 1 chrIV:5803747-5803827 ( 52) CCCTTTTC 1 chrV:3587800-3587880 ( 70) TATTTTTC 1 chrV:16553079-16553159 ( 23) CCCTTTTC 1 chrIV:8782288-8782368 ( 7) CTTTTCTC 1 chrIII:3210164-3210244 ( 72) CCTTTTTT 1 chrIII:2375860-2375940 ( 15) CCTTTTTT 1 chrX:13632425-13632505 ( 41) CTCTTTTC 1 chrV:5291334-5291414 ( 26) CTCTTTTC 1 chrI:13421197-13421277 ( 42) CTCTTTTC 1 chrI:6506779-6506859 ( 43) CTCTTTTC 1 chrIV:96180-96260 ( 6) TCTTTCTC 1 chrIV:5953138-5953218 ( 35) CTTCTTTC 1 chrX:14115636-14115716 ( 15) CTTTTTTT 1 chrV:15071356-15071436 ( 58) TCTCTTTC 1 chrX:5976739-5976819 ( 52) TCTCTTTC 1 chrI:14346758-14346838 ( 70) CTTTTTTT 1 chrI:6136600-6136680 ( 72) TCTTTTTT 1 chrII:8969425-8969505 ( 53) TCTTTTTT 1 chrIII:8873273-8873353 ( 23) TCTTTTTT 1 chrI:9846484-9846564 ( 10) TCTTTTTT 1 chrI:488392-488472 ( 66) CATTTCTC 1 chrX:8995564-8995644 ( 62) TTCTTTTC 1 chrIII:640524-640604 ( 70) CATTTCTC 1 chrII:2289495-2289575 ( 56) TTCTTTTC 1 chrI:1444173-1444253 ( 48) CACTTTTC 1 chrIV:1981094-1981174 ( 67) CACTTTTC 1 chrI:7772625-7772705 ( 27) TTTCTTTC 1 chrII:8442497-8442577 ( 56) TTTTTTTT 1 chrX:8386219-8386299 ( 62) TTTTTTTT 1 chrI:1575743-1575823 ( 66) TTTTTTTT 1 chrIII:1202356-1202436 ( 53) TTTTTTTT 1 chrIII:6297517-6297597 ( 39) CATCTTTC 1 chrV:20879449-20879529 ( 72) TTTTTTTT 1 chrII:6838393-6838473 ( 7) CATCTTTC 1 chrX:8638977-8639057 ( 21) ACTTTTTC 1 chrIV:16415399-16415479 ( 53) ACTTTTTC 1 chrI:14389040-14389120 ( 24) CTTTTTTG 1 chrV:10174837-10174917 ( 56) CTTTTTTG 1 chrI:1823108-1823188 ( 60) CTTTTTTG 1 chrII:7025324-7025404 ( 59) CATTTTTT 1 chrIII:12777257-12777337 ( 7) CTTTTTTG 1 chrX:15189300-15189380 ( 54) TCTTTTTG 1 chrIII:7723828-7723908 ( 70) TATTTCTC 1 chrIII:25681-25761 ( 7) TATTTCTC 1 chrM:7146-7226 ( 59) TCTTTTTG 1 chrIV:5977424-5977504 ( 37) CCCTTCTC 1 chrV:7231015-7231095 ( 56) CCTCTCTC 1 chrIII:665544-665624 ( 33) CCTCTCTC 1 chrIII:2576882-2576962 ( 54) CCTTTCTT 1 chrIII:13293118-13293198 ( 42) ATTTTTTC 1 chrX:3994577-3994657 ( 3) TATCTTTC 1 chrI:27031-27111 ( 18) TATTTTTT 1 chrII:7708767-7708847 ( 37) TATTTTTT 1 chrIII:3437359-3437439 ( 1) TTTTTTTG 1 chrIV:14356297-14356377 ( 47) TCCTTCTC 1 chrX:12404782-12404862 ( 56) TCCTTCTC 1 chrV:7728207-7728287 ( 6) CTCCTTTC 1 chrX:15566723-15566803 ( 38) CTTTTCTT 1 chrIV:14033166-14033246 ( 3) TCTCTCTC 1 chrI:933434-933514 ( 32) CTCCTTTC 1 chrI:5589677-5589757 ( 9) CTCCTTTC 1 chrII:14144063-14144143 ( 18) CTCTTTTT 1 chrIII:3668543-3668623 ( 23) TCTTTCTT 1 chrX:3111142-3111222 ( 13) AATTTTTC 1 chrIV:16865695-16865775 ( 64) AATTTTTC 1 chrII:401435-401515 ( 1) CTTCTTTT 1 chrV:15520557-15520637 ( 59) TATTTTTG 1 chrX:3126438-3126518 ( 34) TATTTTTG 1 chrII:5836497-5836577 ( 15) TATTTTTG 1 chrX:17003982-17004062 ( 67) TTTCTCTC 1 chrV:20832722-20832802 ( 6) TTTTTCTT 1 chrM:2154-2234 ( 49) TTTTTCTT 1 chrX:11317358-11317438 ( 27) ACTTTCTC 1 chrIV:2998843-2998923 ( 14) ACTCTTTC 1 chrX:9337875-9337955 ( 51) CCCCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHTTTTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.56685 E= 1.5e-003 -213 115 -1345 61 -35 89 -1345 36 -1345 -31 -1345 149 -1345 -54 -1345 153 -1345 -1345 -1345 177 -1345 -24 -1345 147 -1345 -1345 -1345 177 -1345 166 -125 -45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHTTTTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 112 E= 1.5e-003 0.062500 0.491071 0.000000 0.446429 0.214286 0.410714 0.000000 0.375000 0.000000 0.178571 0.000000 0.821429 0.000000 0.151786 0.000000 0.848214 0.000000 0.000000 0.000000 1.000000 0.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.000000 1.000000 0.000000 0.696429 0.089286 0.214286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YHTTTTTC MEME-4 regular expression -------------------------------------------------------------------------------- [CT][CTA]TTTTT[CT] -------------------------------------------------------------------------------- Time 18.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCGCR MEME-5 width = 8 sites = 13 llr = 136 E-value = 3.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCGCR MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::5 pos.-specific C a1a2a:a: probability G :8:8:a:5 matrix T :1:::::: bits 2.2 * * *** 2.0 * * *** 1.8 * * *** 1.6 * ***** Relative 1.3 ******* Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6709201-6709281 42 4.82e-06 CTGCAACGCG CGCGCGCG TTTTTCGCAA chrI:14721585-14721665 37 4.82e-06 TTGCAATGCG CGCGCGCG GTTTTCGCAA chrV:4731550-4731630 51 4.82e-06 TGCAAAAACG CGCGCGCG CATTGCATGT chrV:8631570-8631650 1 4.82e-06 . CGCGCGCG TTTTTGCAAT chrV:4964357-4964437 45 4.82e-06 TTGAGCTCTC CGCGCGCG AGCCGTGGTG chrIII:10869098-10869178 42 4.82e-06 AATAGAGAAA CGCGCGCG CATTGCAAGG chrI:1444173-1444253 20 1.10e-05 TTGCAACCAG CGCGCGCA CTTTTCGCAA chrIII:3916794-3916874 39 1.10e-05 GCAAACACTG CGCGCGCA GCTTGCAAGT chrIII:3664416-3664496 6 1.10e-05 CACGC CGCGCGCA TTTCGCAACG chrX:16928247-16928327 51 1.61e-05 gaacccgggc cgcccgcg tggcaggcga chrI:11323319-11323399 65 2.26e-05 AAATATCGCG CGCCCGCA TTGCAATT chrV:7231015-7231095 20 4.07e-05 AGTCGCAACC CCCGCGCA CTTTTTATGC chrV:12026954-12027034 36 4.93e-05 GCAAAAGCAG CTCGCGCA AACATACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6709201-6709281 4.8e-06 41_[+5]_31 chrI:14721585-14721665 4.8e-06 36_[+5]_36 chrV:4731550-4731630 4.8e-06 50_[+5]_22 chrV:8631570-8631650 4.8e-06 [+5]_72 chrV:4964357-4964437 4.8e-06 44_[+5]_28 chrIII:10869098-10869178 4.8e-06 41_[+5]_31 chrI:1444173-1444253 1.1e-05 19_[+5]_53 chrIII:3916794-3916874 1.1e-05 38_[+5]_34 chrIII:3664416-3664496 1.1e-05 5_[+5]_67 chrX:16928247-16928327 1.6e-05 50_[+5]_22 chrI:11323319-11323399 2.3e-05 64_[+5]_8 chrV:7231015-7231095 4.1e-05 19_[+5]_53 chrV:12026954-12027034 4.9e-05 35_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCGCR width=8 seqs=13 chrV:6709201-6709281 ( 42) CGCGCGCG 1 chrI:14721585-14721665 ( 37) CGCGCGCG 1 chrV:4731550-4731630 ( 51) CGCGCGCG 1 chrV:8631570-8631650 ( 1) CGCGCGCG 1 chrV:4964357-4964437 ( 45) CGCGCGCG 1 chrIII:10869098-10869178 ( 42) CGCGCGCG 1 chrI:1444173-1444253 ( 20) CGCGCGCA 1 chrIII:3916794-3916874 ( 39) CGCGCGCA 1 chrIII:3664416-3664496 ( 6) CGCGCGCA 1 chrX:16928247-16928327 ( 51) CGCCCGCG 1 chrI:11323319-11323399 ( 65) CGCCCGCA 1 chrV:7231015-7231095 ( 20) CCCGCGCA 1 chrV:12026954-12027034 ( 36) CTCGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6191 E= 3.5e-001 -1035 218 -1035 -1035 -1035 -152 199 -193 -1035 218 -1035 -1035 -1035 -52 199 -1035 -1035 218 -1035 -1035 -1035 -1035 224 -1035 -1035 218 -1035 -1035 75 -1035 134 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.5e-001 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.846154 0.076923 0.000000 1.000000 0.000000 0.000000 0.000000 0.153846 0.846154 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.000000 0.538462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCR MEME-5 regular expression -------------------------------------------------------------------------------- CGCGCGC[GA] -------------------------------------------------------------------------------- Time 22.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:665339-665419 5.63e-02 54_[+1(3.72e-05)]_18 chrX:15011720-15011800 7.26e-03 11_[+1(1.42e-05)]_61 chrI:5311389-5311469 1.20e-01 29_[+1(4.54e-05)]_43 chrX:17003780-17003860 1.75e-02 4_[+1(2.20e-05)]_68 chrV:1360374-1360454 6.88e-03 46_[+1(2.20e-05)]_26 chrIV:7663138-7663218 8.71e-04 65_[+3(5.28e-05)]_7 chrIV:96180-96260 1.94e-03 41_[+1(1.42e-05)]_31 chrIII:3668543-3668623 5.99e-03 70_[+1(5.49e-05)]_2 chrV:5404135-5404215 4.28e-04 5_[+1(2.20e-05)]_67 chrII:6838393-6838473 5.90e-02 62_[+1(6.79e-05)]_10 chrI:5589677-5589757 1.02e-02 58_[+1(1.42e-05)]_14 chrI:3718718-3718798 5.29e-01 80 chrV:265394-265474 9.12e-01 80 chrIV:5977424-5977504 3.77e-03 13_[+3(3.37e-05)]_59 chrX:10219446-10219526 2.38e-01 10_[+1(4.54e-05)]_26_[+1(4.54e-05)]_\ 9_[+1(4.54e-05)]_11 chrIII:665544-665624 5.87e-02 80 chrIII:3382041-3382121 1.42e-02 27_[+1(5.97e-06)]_45 chrX:1181727-1181807 2.33e-01 80 chrII:873564-873644 2.50e-03 70_[+1(8.63e-05)]_2 chrII:6706830-6706910 7.91e-02 80 chrI:6506779-6506859 4.80e-01 80 chrIII:4063793-4063873 7.64e-05 5_[+1(5.97e-06)]_17_[+4(2.33e-05)]_\ 42 chrX:17003982-17004062 3.17e-01 80 chrII:6812681-6812761 6.53e-03 7_[+1(4.54e-05)]_17_[+3(3.37e-05)]_\ 40 chrX:5512885-5512965 6.93e-01 80 chrII:401435-401515 4.60e-01 80 chrI:14346758-14346838 7.04e-05 26_[+3(3.37e-05)]_[+2(4.62e-06)]_38 chrIV:1687302-1687382 3.46e-01 22_[+4(5.42e-05)]_50 chrX:9735993-9736073 1.91e-02 3_[+1(2.20e-05)]_69 chrIII:4721792-4721872 3.34e-02 28_[+1(1.42e-05)]_44 chrI:11589187-11589267 5.09e-04 8_[+2(3.48e-05)]_34_[+3(1.47e-05)]_\ 1_[+3(1.47e-05)]_13 chrV:16553079-16553159 4.53e-01 80 chrX:5976739-5976819 6.43e-01 80 chrI:9846484-9846564 4.26e-05 72_[+3(1.47e-05)] chrII:98189-98269 1.37e-01 80 chrIII:3499996-3500076 2.61e-01 80 chrX:2728465-2728545 1.25e-02 72_[+4(2.33e-05)] chrIII:2375860-2375940 4.30e-03 22_[+1(3.72e-05)]_50 chrI:12966592-12966672 8.33e-01 80 chrV:19723121-19723201 1.64e-01 80 chrIII:3476346-3476426 7.64e-01 80 chrIV:3621882-3621962 3.67e-02 44_[+1(5.97e-06)]_28 chrIV:6958851-6958931 1.35e-01 33_[+4(8.51e-05)]_39 chrII:2289495-2289575 1.84e-01 80 chrI:13421197-13421277 1.53e-01 80 chrIII:5218834-5218914 6.56e-02 46_[+1(1.42e-05)]_26 chrM:7347-7427 4.81e-01 80 chrV:11959784-11959864 9.93e-02 80 chrX:11473495-11473575 3.15e-02 30_[+3(1.47e-05)]_1_[+3(1.47e-05)]_\ 10_[+3(1.47e-05)]_15 chrV:20879449-20879529 6.51e-01 80 chrI:5312845-5312925 6.71e-01 80 chrV:5291334-5291414 3.47e-03 80 chrV:7261143-7261223 1.28e-02 13_[+1(4.54e-05)]_59 chrV:12325731-12325811 1.88e-01 29_[+4(5.42e-05)]_43 chrII:6772511-6772591 5.90e-01 80 chrV:11933400-11933480 8.65e-01 80 chrI:2580129-2580209 2.28e-02 70_[+3(1.47e-05)]_2 chrIII:11459001-11459081 3.04e-02 38_[+4(5.42e-05)]_34 chrX:12629487-12629567 1.54e-03 66_[+4(5.42e-05)]_6 chrII:5836497-5836577 5.93e-01 80 chrX:12404782-12404862 2.83e-01 80 chrV:265621-265701 3.91e-02 32_[+4(5.42e-05)]_40 chrIII:8873273-8873353 1.29e-01 80 chrX:15653730-15653810 9.17e-01 80 chrM:10854-10934 8.35e-01 80 chrX:6134746-6134826 6.99e-02 41_[+4(2.33e-05)]_31 chrX:1064337-1064417 9.01e-03 23_[+4(8.51e-05)]_49 chrM:8211-8291 5.62e-01 80 chrII:11979952-11980032 4.17e-01 80 chrI:4132235-4132315 3.35e-03 59_[+2(4.62e-06)]_13 chrI:9787762-9787842 9.71e-01 80 chrM:7146-7226 8.06e-01 80 chrIII:9882978-9883058 8.14e-01 80 chrIII:640524-640604 3.41e-01 80 chrM:6053-6133 7.94e-01 80 chrI:2487859-2487939 2.21e-01 80 chrIV:11310790-11310870 1.02e-02 4_[+2(4.62e-06)]_68 chrI:816060-816140 4.34e-01 80 chrV:7231015-7231095 5.49e-03 19_[+5(4.07e-05)]_53 chrI:1175884-1175964 4.37e-01 80 chrI:14971752-14971832 9.63e-02 1_[+4(8.51e-05)]_71 chrIII:6297517-6297597 1.24e-02 1_[+1(2.20e-05)]_71 chrV:12465514-12465594 4.59e-02 45_[+4(8.51e-05)]_27 chrIII:13484553-13484633 1.57e-03 42_[+4(8.51e-05)]_13_[+3(3.37e-05)]_\ 9 chrM:2154-2234 4.51e-01 80 chrV:3587800-3587880 1.05e-03 12_[+2(5.93e-05)]_60 chrIV:10512094-10512174 6.00e-02 2_[+1(2.20e-05)]_70 chrI:10026046-10026126 6.60e-03 80 chrIII:3664416-3664496 3.95e-02 5_[+5(1.10e-05)]_67 chrIV:9611775-9611855 9.92e-01 80 chrX:11317358-11317438 6.08e-01 80 chrIII:11091878-11091958 8.61e-01 80 chrIV:9316206-9316286 4.60e-03 15_[+2(1.08e-05)]_57 chrI:8291119-8291199 1.14e-01 80 chrIII:6141681-6141761 4.55e-02 31_[+1(1.42e-05)]_41 chrX:2957721-2957801 5.36e-02 4_[+1(5.97e-06)]_68 chrIII:1133121-1133201 4.69e-05 68_[+4(5.42e-05)]_4 chrIII:10811006-10811086 2.47e-01 80 chrX:13632425-13632505 2.45e-01 80 chrIII:9084468-9084548 1.99e-02 80 chrI:12571924-12572004 5.38e-01 80 chrI:308359-308439 5.31e-04 30_[+4(2.33e-05)]_5_[+1(5.49e-05)]_\ 29 chrM:4633-4713 3.99e-01 80 chrM:9165-9245 9.59e-01 80 chrII:6741581-6741661 6.39e-01 80 chrI:1416011-1416091 9.92e-01 80 chrI:7772625-7772705 4.83e-01 80 chrIII:12777257-12777337 5.28e-03 35_[+1(5.49e-05)]_37 chrIV:5803747-5803827 1.09e-01 80 chrIV:2998843-2998923 9.07e-05 41_[+2(2.91e-05)]_[+5(4.82e-06)]_23 chrIV:6647646-6647726 3.52e-01 80 chrII:2570619-2570699 5.42e-01 80 chrIII:3175111-3175191 1.32e-02 49_[+2(2.46e-05)]_23 chrI:6252913-6252993 4.86e-02 80 chrII:9261695-9261775 3.92e-01 80 chrX:16988520-16988600 2.69e-03 26_[+4(2.33e-05)]_46 chrIII:10869098-10869178 6.73e-03 41_[+5(4.82e-06)]_31 chrIII:10856970-10857050 9.85e-01 80 chrX:4890490-4890570 1.08e-01 80 chrX:1160702-1160782 1.35e-01 28_[+1(3.72e-05)]_44 chrIII:12556216-12556296 2.25e-02 80 chrIII:3437359-3437439 1.82e-01 80 chrI:933434-933514 6.22e-01 80 chrV:15520343-15520423 2.97e-01 9_[+4(8.51e-05)]_63 chrX:3126438-3126518 1.42e-02 80 chrII:6942193-6942273 5.49e-01 80 chrI:1598537-1598617 3.58e-04 34_[+3(3.37e-05)]_38 chrII:5429852-5429932 9.57e-02 44_[+2(4.12e-05)]_28 chrIV:11635746-11635826 2.33e-01 60_[+5(7.73e-05)]_12 chrIV:14033166-14033246 6.77e-02 80 chrII:7025324-7025404 4.96e-02 80 chrII:7708767-7708847 9.60e-03 9_[+5(7.73e-05)]_63 chrII:14528349-14528429 8.41e-01 80 chrIII:10123785-10123865 3.95e-02 80 chrV:12026954-12027034 3.24e-02 35_[+5(4.93e-05)]_37 chrM:12380-12460 8.75e-02 80 chrX:17030672-17030752 4.94e-01 80 chrII:8137534-8137614 7.10e-01 80 chrV:4218377-4218457 2.73e-02 80 chrIII:3210164-3210244 1.86e-01 80 chrM:1110-1190 9.78e-01 80 chrI:3873910-3873990 1.96e-02 31_[+2(1.08e-05)]_13_[+2(5.93e-05)]_\ 20 chrV:18720490-18720570 8.44e-02 80 chrI:2710640-2710720 5.80e-01 80 chrIV:10403242-10403322 4.88e-02 80 chrIII:25681-25761 1.43e-01 80 chrII:6993002-6993082 3.44e-01 80 chrX:9296759-9296839 4.26e-01 80 chrIII:1202356-1202436 2.81e-02 80 chrI:1823108-1823188 6.90e-01 80 chrM:3302-3382 4.92e-01 80 chrII:11328521-11328601 1.07e-01 55_[+1(1.42e-05)]_17 chrX:9337875-9337955 1.07e-02 80 chrX:1018629-1018709 5.70e-01 80 chrIII:535317-535397 3.07e-01 80 chrV:4964357-4964437 4.28e-04 44_[+5(4.82e-06)]_28 chrV:15071356-15071436 7.40e-03 80 chrIV:5974224-5974304 4.93e-03 2_[+3(1.47e-05)]_13_[+4(8.51e-05)]_\ 49 chrIV:7736825-7736905 8.85e-02 33_[+1(1.42e-05)]_39 chrV:5849680-5849760 6.39e-03 70_[+3(3.37e-05)]_2 chrIII:3916794-3916874 1.15e-03 15_[+2(1.08e-05)]_15_[+5(1.10e-05)]_\ 34 chrI:27031-27111 2.11e-01 80 chrX:7678662-7678742 4.22e-01 23_[+4(8.51e-05)]_49 chrIV:16865695-16865775 3.13e-03 21_[+2(2.46e-05)]_51 chrV:15520557-15520637 2.85e-03 80 chrX:16928247-16928327 2.24e-03 50_[+5(1.61e-05)]_22 chrX:6686898-6686978 6.06e-01 80 chrIV:1981094-1981174 4.99e-04 36_[+2(4.62e-06)]_36 chrIII:6551707-6551787 1.45e-01 7_[+4(2.33e-05)]_65 chrX:12688509-12688589 9.24e-01 80 chrIV:5371027-5371107 2.65e-02 53_[+2(2.46e-05)]_19 chrX:10396993-10397073 7.64e-01 80 chrI:7251685-7251765 4.89e-02 80 chrI:1444173-1444253 6.86e-03 19_[+5(1.10e-05)]_53 chrIII:8412109-8412189 6.04e-03 80 chrV:11239332-11239412 3.72e-01 80 chrV:8631570-8631650 1.05e-02 [+5(4.82e-06)]_72 chrII:6859026-6859106 1.01e-01 [+2(4.12e-05)]_72 chrX:8995564-8995644 3.69e-02 51_[+5(7.73e-05)]_21 chrM:12581-12661 9.40e-01 80 chrI:13310280-13310360 1.46e-02 80 chrIII:11093655-11093735 5.72e-01 80 chrII:3428373-3428453 8.73e-01 80 chrI:961316-961396 3.24e-01 80 chrV:1003907-1003987 8.69e-01 80 chrV:5592412-5592492 9.00e-01 80 chrX:3994577-3994657 1.77e-01 80 chrII:14063127-14063207 4.04e-01 80 chrI:11323319-11323399 5.21e-04 40_[+2(1.08e-05)]_16_[+5(2.26e-05)]_\ 8 chrV:20493653-20493733 1.28e-01 60_[+4(5.42e-05)]_12 chrX:993216-993296 2.03e-02 20_[+2(1.08e-05)]_52 chrV:13962147-13962227 6.94e-04 60_[+2(1.67e-05)]_12 chrIII:10811230-10811310 9.23e-02 80 chrX:15566723-15566803 4.30e-01 80 chrIV:796675-796755 7.03e-01 80 chrV:13715468-13715548 4.02e-01 80 chrV:10174837-10174917 2.37e-01 80 chrV:6881011-6881091 5.11e-01 80 chrIV:7230301-7230381 5.55e-01 80 chrII:14144063-14144143 3.46e-01 80 chrI:488392-488472 1.37e-02 80 chrV:7728207-7728287 1.48e-02 80 chrIII:13293118-13293198 1.75e-01 80 chrII:5293469-5293549 2.87e-01 80 chrI:14389040-14389120 2.03e-02 80 chrV:4731550-4731630 4.57e-03 48_[+5(4.82e-06)]_24 chrI:10642479-10642559 2.26e-01 80 chrX:3111142-3111222 3.48e-02 49_[+3(3.37e-05)]_13_[+3(5.28e-05)]_\ 2 chrIV:16415399-16415479 4.15e-01 80 chrIII:2576882-2576962 4.03e-02 64_[+3(3.37e-05)]_8 chrI:11505521-11505601 6.60e-01 80 chrII:3567795-3567875 6.37e-02 37_[+2(2.91e-05)]_35 chrV:14855773-14855853 5.09e-01 80 chrI:8530135-8530215 7.81e-01 80 chrI:1575743-1575823 4.52e-01 80 chrV:11039740-11039820 3.29e-01 80 chrX:8386219-8386299 4.58e-01 80 chrIII:8250419-8250499 7.10e-01 80 chrM:4833-4913 7.53e-01 80 chrX:14115636-14115716 3.13e-01 80 chrII:4238053-4238133 9.87e-03 26_[+2(2.46e-05)]_15_[+2(1.08e-05)]_\ 23 chrV:20832722-20832802 1.20e-01 53_[+3(5.28e-05)]_19 chrIII:888014-888094 2.67e-01 3_[+4(8.51e-05)]_69 chrIV:14356297-14356377 4.52e-01 80 chrI:14721585-14721665 5.25e-04 34_[+5(4.82e-06)]_38 chrV:18710333-18710413 4.99e-01 80 chrIII:8874242-8874322 9.64e-01 80 chrI:853258-853338 4.88e-02 80 chrI:7082703-7082783 1.56e-01 80 chrII:5390057-5390137 2.57e-01 80 chrIV:5953138-5953218 7.36e-02 80 chrIII:11317242-11317322 8.30e-01 80 chrIV:13695955-13696035 7.73e-01 80 chrI:14628162-14628242 3.61e-01 80 chrIV:16946898-16946978 2.99e-03 47_[+2(5.93e-05)]_25 chrII:8969425-8969505 1.09e-02 80 chrII:8442497-8442577 6.92e-01 80 chrIII:7723828-7723908 5.89e-01 80 chrIV:15289635-15289715 1.56e-01 80 chrV:6224916-6224996 7.30e-01 80 chrIV:410664-410744 1.33e-01 52_[+4(8.51e-05)]_20 chrV:6709201-6709281 8.02e-03 37_[+5(4.82e-06)]_35 chrII:11676098-11676178 7.13e-01 80 chrIV:8782288-8782368 1.35e-01 80 chrX:15189300-15189380 4.31e-02 80 chrI:1070063-1070143 1.88e-01 15_[+3(1.47e-05)]_37_[+3(3.37e-05)]_\ 4_[+3(3.37e-05)] chrI:6136600-6136680 1.19e-01 80 chrV:7776262-7776342 1.57e-02 80 chrX:8638977-8639057 4.52e-01 80 chrIII:3540598-3540678 8.92e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************