******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-130.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:1014412-1014492 1.0000 80 chrV:10018479-10018559 1.0000 80 chrV:15065990-15066070 1.0000 80 chrII:6519874-6519954 1.0000 80 chrII:6113324-6113404 1.0000 80 chrI:1014633-1014713 1.0000 80 chrIV:9336709-9336789 1.0000 80 chrI:10106262-10106342 1.0000 80 chrI:7554756-7554836 1.0000 80 chrI:13487579-13487659 1.0000 80 chrII:9523711-9523791 1.0000 80 chrII:6365371-6365451 1.0000 80 chrIII:10320367-10320447 1.0000 80 chrV:13131652-13131732 1.0000 80 chrII:11860755-11860835 1.0000 80 chrIII:9504504-9504584 1.0000 80 chrV:13000249-13000329 1.0000 80 chrI:6003114-6003194 1.0000 80 chrV:15769237-15769317 1.0000 80 chrI:3931906-3931986 1.0000 80 chrII:13722928-13723008 1.0000 80 chrI:5113862-5113942 1.0000 80 chrIII:9746794-9746874 1.0000 80 chrIV:13353397-13353477 1.0000 80 chrIII:7104199-7104279 1.0000 80 chrIV:8888668-8888748 1.0000 80 chrI:128339-128419 1.0000 80 chrV:4175774-4175854 1.0000 80 chrII:4604871-4604951 1.0000 80 chrV:5717396-5717476 1.0000 80 chrIV:8061429-8061509 1.0000 80 chrIV:11337176-11337256 1.0000 80 chrI:3866593-3866673 1.0000 80 chrI:3198947-3199027 1.0000 80 chrII:10935467-10935547 1.0000 80 chrI:14734757-14734837 1.0000 80 chrII:11968416-11968496 1.0000 80 chrI:6282514-6282594 1.0000 80 chrIII:4782216-4782296 1.0000 80 chrV:8413792-8413872 1.0000 80 chrIV:9778170-9778250 1.0000 80 chrIV:5469896-5469976 1.0000 80 chrIV:7477871-7477951 1.0000 80 chrIII:4176366-4176446 1.0000 80 chrII:12739471-12739551 1.0000 80 chrIII:10600370-10600450 1.0000 80 chrV:3578958-3579038 1.0000 80 chrIII:9408475-9408555 1.0000 80 chrV:4890125-4890205 1.0000 80 chrIV:7958330-7958410 1.0000 80 chrIII:4999099-4999179 1.0000 80 chrV:19770912-19770992 1.0000 80 chrI:3368683-3368763 1.0000 80 chrIII:5663700-5663780 1.0000 80 chrII:14410966-14411046 1.0000 80 chrI:5619257-5619337 1.0000 80 chrIII:4489092-4489172 1.0000 80 chrII:9939048-9939128 1.0000 80 chrI:4765566-4765646 1.0000 80 chrII:7664061-7664141 1.0000 80 chrII:7353152-7353232 1.0000 80 chrIII:5939243-5939323 1.0000 80 chrI:9314897-9314977 1.0000 80 chrI:8487418-8487498 1.0000 80 chrII:11577994-11578074 1.0000 80 chrI:6565970-6566050 1.0000 80 chrIV:7796852-7796932 1.0000 80 chrI:5274335-5274415 1.0000 80 chrI:7056636-7056716 1.0000 80 chrIII:2725781-2725861 1.0000 80 chrI:6369854-6369934 1.0000 80 chrV:10023158-10023238 1.0000 80 chrIII:9617091-9617171 1.0000 80 chrIV:7548362-7548442 1.0000 80 chrIII:4205903-4205983 1.0000 80 chrIII:5727959-5728039 1.0000 80 chrV:2067572-2067652 1.0000 80 chrIV:6421317-6421397 1.0000 80 chrI:11965938-11966018 1.0000 80 chrI:13310773-13310853 1.0000 80 chrIII:11869673-11869753 1.0000 80 chrII:8253336-8253416 1.0000 80 chrI:10436942-10437022 1.0000 80 chrI:6950709-6950789 1.0000 80 chrIII:10807408-10807488 1.0000 80 chrI:11222201-11222281 1.0000 80 chrI:519977-520057 1.0000 80 chrII:13522260-13522340 1.0000 80 chrV:10732833-10732913 1.0000 80 chrV:16793482-16793562 1.0000 80 chrIII:10877670-10877750 1.0000 80 chrIV:1277197-1277277 1.0000 80 chrI:3152625-3152705 1.0000 80 chrI:7676347-7676427 1.0000 80 chrII:14247404-14247484 1.0000 80 chrII:2919563-2919643 1.0000 80 chrV:11554472-11554552 1.0000 80 chrIII:4434577-4434657 1.0000 80 chrII:11782663-11782743 1.0000 80 chrIII:8689281-8689361 1.0000 80 chrI:9512357-9512437 1.0000 80 chrII:10393839-10393919 1.0000 80 chrV:14457215-14457295 1.0000 80 chrIII:9091553-9091633 1.0000 80 chrIII:12495817-12495897 1.0000 80 chrII:7880566-7880646 1.0000 80 chrV:297749-297829 1.0000 80 chrIII:4313204-4313284 1.0000 80 chrII:6683051-6683131 1.0000 80 chrIV:4712599-4712679 1.0000 80 chrI:5827834-5827914 1.0000 80 chrIV:15528985-15529065 1.0000 80 chrII:14245031-14245111 1.0000 80 chrV:20088448-20088528 1.0000 80 chrV:14992897-14992977 1.0000 80 chrII:6491314-6491394 1.0000 80 chrIII:8683846-8683926 1.0000 80 chrV:13312444-13312524 1.0000 80 chrI:6513902-6513982 1.0000 80 chrV:11478075-11478155 1.0000 80 chrI:14104401-14104481 1.0000 80 chrII:4471063-4471143 1.0000 80 chrIII:7102039-7102119 1.0000 80 chrV:6593880-6593960 1.0000 80 chrIV:9741308-9741388 1.0000 80 chrIV:9739119-9739199 1.0000 80 chrII:2992712-2992792 1.0000 80 chrI:11970057-11970137 1.0000 80 chrV:9382710-9382790 1.0000 80 chrIV:12194810-12194890 1.0000 80 chrIV:11695776-11695856 1.0000 80 chrI:8255108-8255188 1.0000 80 chrI:7519013-7519093 1.0000 80 chrI:3608402-3608482 1.0000 80 chrIV:13512333-13512413 1.0000 80 chrII:5819828-5819908 1.0000 80 chrI:9226647-9226727 1.0000 80 chrI:8789390-8789470 1.0000 80 chrII:10197250-10197330 1.0000 80 chrI:8681716-8681796 1.0000 80 chrIII:10320569-10320649 1.0000 80 chrII:5377588-5377668 1.0000 80 chrII:6198623-6198703 1.0000 80 chrIII:8101140-8101220 1.0000 80 chrIII:10506049-10506129 1.0000 80 chrI:3265356-3265436 1.0000 80 chrIII:2858491-2858571 1.0000 80 chrIV:6887836-6887916 1.0000 80 chrIII:3719752-3719832 1.0000 80 chrIII:4792741-4792821 1.0000 80 chrIII:11118262-11118342 1.0000 80 chrV:4376330-4376410 1.0000 80 chrIV:4447515-4447595 1.0000 80 chrV:1870764-1870844 1.0000 80 chrV:6214651-6214731 1.0000 80 chrII:10783734-10783814 1.0000 80 chrIV:13503603-13503683 1.0000 80 chrIII:7293198-7293278 1.0000 80 chrII:7037814-7037894 1.0000 80 chrIII:9793986-9794066 1.0000 80 chrIII:11290038-11290118 1.0000 80 chrI:6467674-6467754 1.0000 80 chrI:12903698-12903778 1.0000 80 chrIII:4412773-4412853 1.0000 80 chrI:4382110-4382190 1.0000 80 chrI:10184483-10184563 1.0000 80 chrIV:6903807-6903887 1.0000 80 chrII:4229262-4229342 1.0000 80 chrII:10926336-10926416 1.0000 80 chrIV:11142897-11142977 1.0000 80 chrIV:10197510-10197590 1.0000 80 chrI:12806842-12806922 1.0000 80 chrIII:4785341-4785421 1.0000 80 chrII:4911760-4911840 1.0000 80 chrIII:12575491-12575571 1.0000 80 chrI:2316049-2316129 1.0000 80 chrI:3269150-3269230 1.0000 80 chrIV:12121225-12121305 1.0000 80 chrI:347207-347287 1.0000 80 chrIII:11093621-11093701 1.0000 80 chrI:2144160-2144240 1.0000 80 chrI:8839261-8839341 1.0000 80 chrIII:1603921-1604001 1.0000 80 chrIV:3132389-3132469 1.0000 80 chrI:5818202-5818282 1.0000 80 chrIV:14764839-14764919 1.0000 80 chrIII:4862110-4862190 1.0000 80 chrIII:7858722-7858802 1.0000 80 chrII:7121981-7122061 1.0000 80 chrV:20090863-20090943 1.0000 80 chrIII:881534-881614 1.0000 80 chrI:10192900-10192980 1.0000 80 chrIII:9615316-9615396 1.0000 80 chrII:10884499-10884579 1.0000 80 chrV:6783224-6783304 1.0000 80 chrIII:4984856-4984936 1.0000 80 chrII:12919328-12919408 1.0000 80 chrI:13576136-13576216 1.0000 80 chrIV:379732-379812 1.0000 80 chrV:13560161-13560241 1.0000 80 chrV:13660350-13660430 1.0000 80 chrIV:11054039-11054119 1.0000 80 chrIV:13400795-13400875 1.0000 80 chrV:9549606-9549686 1.0000 80 chrIII:7165428-7165508 1.0000 80 chrII:14218374-14218454 1.0000 80 chrI:11580314-11580394 1.0000 80 chrIII:6970027-6970107 1.0000 80 chrIII:4230220-4230300 1.0000 80 chrII:8933857-8933937 1.0000 80 chrIII:9818059-9818139 1.0000 80 chrI:12961971-12962051 1.0000 80 chrIII:6442651-6442731 1.0000 80 chrI:3784625-3784705 1.0000 80 chrIV:5946927-5947007 1.0000 80 chrII:5421115-5421195 1.0000 80 chrIV:12278651-12278731 1.0000 80 chrIII:3331906-3331986 1.0000 80 chrIII:5448351-5448431 1.0000 80 chrI:364207-364287 1.0000 80 chrII:13521430-13521510 1.0000 80 chrIII:12875871-12875951 1.0000 80 chrV:2008562-2008642 1.0000 80 chrI:10422378-10422458 1.0000 80 chrIII:9748902-9748982 1.0000 80 chrI:12507875-12507955 1.0000 80 chrIII:13423586-13423666 1.0000 80 chrIV:2655170-2655250 1.0000 80 chrV:9536668-9536748 1.0000 80 chrI:5579290-5579370 1.0000 80 chrV:20476645-20476725 1.0000 80 chrI:9287243-9287323 1.0000 80 chrV:4447774-4447854 1.0000 80 chrII:15076925-15077005 1.0000 80 chrII:8276170-8276250 1.0000 80 chrI:3697838-3697918 1.0000 80 chrI:13652755-13652835 1.0000 80 chrI:8751589-8751669 1.0000 80 chrII:4993980-4994060 1.0000 80 chrIII:2102072-2102152 1.0000 80 chrIII:5207126-5207206 1.0000 80 chrIII:9776122-9776202 1.0000 80 chrI:7695295-7695375 1.0000 80 chrI:5620587-5620667 1.0000 80 chrM:184-264 1.0000 80 chrIII:2111552-2111632 1.0000 80 chrII:14480041-14480121 1.0000 80 chrII:5511883-5511963 1.0000 80 chrIV:17088949-17089029 1.0000 80 chrII:4320446-4320526 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_unc-130/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-130.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.289 C 0.206 G 0.206 T 0.299 Background letter frequencies (from file dataset with add-one prior applied): A 0.289 C 0.206 G 0.206 T 0.299 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TACNGTAG MEME-1 width = 8 sites = 80 llr = 659 E-value = 2.8e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:2::a2 pos.-specific C ::a2:::2 probability G :::3a::5 matrix T a::3:a:1 bits 2.3 * * 2.1 * * 1.8 ** ** 1.6 *** *** Relative 1.4 *** *** Entropy 1.1 *** *** (11.9 bits) 0.9 *** *** 0.7 *** *** 0.5 *** **** 0.2 *** **** 0.0 -------- Multilevel TACGGTAG consensus T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:4320446-4320526 28 1.34e-05 TAAAAATGGG TACGGTAG GATTTAATTT chrI:12507875-12507955 7 1.34e-05 ATGGGA TACGGTAG ATTTAAAGGC chrIII:9818059-9818139 62 1.34e-05 ACTGTAGGTG TACGGTAG ACAATTTTTT chrI:5818202-5818282 69 1.34e-05 AACAAAGAAC TACGGTAG TCGA chrIII:11290038-11290118 68 1.34e-05 TTTAAACGAT TACGGTAG TATCC chrII:10783734-10783814 34 1.34e-05 TTGCAAAGGG TACGGTAG CCGATTCAAA chrII:5377588-5377668 8 1.34e-05 GTCCAAC TACGGTAG TTTTCAAAAT chrI:11970057-11970137 49 1.34e-05 TTTGCCAAAC TACGGTAG TTGAGAAAGT chrII:14247404-14247484 32 1.34e-05 TCCGGGGGTA TACGGTAG TAGCACTTTT chrIII:10877670-10877750 31 1.34e-05 TTTGGCGGGC TACGGTAG TTTTAAAGGC chrI:519977-520057 40 1.34e-05 CGCGCCGAAG TACGGTAG GTCCCGCATT chrI:6950709-6950789 26 1.34e-05 GAGCGCAGGT TACGGTAG CACTCGTTTC chrI:6282514-6282594 13 1.34e-05 CTAATGGTGA TACGGTAG ATTTCAAACT chrV:13131652-13131732 27 1.34e-05 CGTCTCAAGG TACGGTAG TTTTCCACTT chrI:1014412-1014492 50 1.34e-05 AGAAATTGGT TACGGTAG AGAAATTTGT chrIII:12495817-12495897 69 2.69e-05 ACTCCACAAC TACCGTAG TCCA chrI:13310773-13310853 27 2.69e-05 ATTTCAACTC TACCGTAG CCCGGTTACT chrII:14410966-14411046 35 2.69e-05 AAATGGCTGT TACCGTAG TTGTTTAAAT chrI:3368683-3368763 60 2.69e-05 CGCAATGTGC TACCGTAG TTGTTGTTTA chrII:11968416-11968496 21 2.69e-05 TCACCACGAC TACCGTAG CCCGTGGAGC chrII:9523711-9523791 26 2.69e-05 TCTCTACGAA TACCGTAG TCACTTGGTT chrI:9287243-9287323 10 4.64e-05 TTTTATGGG TACTGTAG TGGGGGTGTG chrV:2008562-2008642 60 4.64e-05 caaatgggac tactgtag aaatttcctc chrII:5421115-5421195 6 4.64e-05 AAGGG TACTGTAG TTTTTTTTAA chrIII:2858491-2858571 37 4.64e-05 AAATGAGGGT TACTGTAG AAGTACACCG chrI:8681716-8681796 72 4.64e-05 GAAACGATGT TACTGTAG A chrIV:13512333-13512413 42 4.64e-05 CGAAATAAAG TACTGTAG AATTTAAAGG chrIV:9739119-9739199 5 4.64e-05 GAGA TACTGTAG ATATTTACCT chrII:11577994-11578074 32 4.64e-05 ACGAGAGGAC TACTGTAG TTTTTAAAGG chrI:5619257-5619337 71 4.64e-05 GTTACCGGGT TACTGTAG TA chrIII:10600370-10600450 23 4.64e-05 TCCTTTGAGG TACTGTAG TTGTGCAATG chrII:12739471-12739551 62 4.64e-05 TTTTCCTGGC TACTGTAG TTCACAAAAT chrI:5113862-5113942 69 4.64e-05 GTTTCGGGAA TACTGTAG TCGA chrIII:9504504-9504584 29 4.64e-05 CCTAATGGGC TACTGTAG CTAATAAGTT chrI:1014633-1014713 40 4.64e-05 TTTAACTGGA TACTGTAG CAGGAAAAAT chrII:6519874-6519954 65 4.64e-05 TGCTGCGCAC TACTGTAG GCCGAAAA chrI:3784625-3784705 51 6.53e-05 CTTGAATGCG TACAGTAG GATAATGTTT chrIII:10320569-10320649 73 6.53e-05 TCGTACCAAC TACAGTAG chrII:6683051-6683131 13 6.53e-05 AATCTTTGCC TACAGTAG CTTTAAGGAA chrI:5274335-5274415 48 6.53e-05 AACTGTCAAC TACAGTAG CCAGAAAAAT chrI:8751589-8751669 28 7.87e-05 TGAAAAGGGG TACGGTAC GCCGCAAACA chrIII:5663700-5663780 8 7.87e-05 AGATGGG TACGGTAC GCATtcgcgg chrV:13560161-13560241 39 9.76e-05 Atttgctggt tacggtaa aaaagtacgc chrI:9512357-9512437 60 9.76e-05 AATTGTTGAC TACGGTAA TCCATCCGAT chrI:6369854-6369934 42 9.76e-05 CGCCGCGAGA TACGGTAA GCGAGCGCCA chrI:6003114-6003194 14 9.76e-05 AATATCAAGT TACGGTAA GCGTTGCGGG chrII:6365371-6365451 25 9.76e-05 CCCCGTGAGT TACGGTAA TCGTGGTGGG chrII:11782663-11782743 20 1.11e-04 TATTTCCAAT TACCGTAC CCAGTTAGCG chrII:7664061-7664141 30 1.11e-04 TCGAAGCGAA TACCGTAC CCGGCAAGAT chrI:4765566-4765646 6 1.11e-04 CGCAA TACCGTAC CCAATTAAAT chrV:3578958-3579038 30 1.11e-04 CGTACTCGCC TACCGTAC CCTCGGTGTT chrIV:9778170-9778250 19 1.11e-04 CTTTATTGTG TACCGTAC TCCTGTTGTT chrIV:13353397-13353477 9 1.11e-04 ACCGCGTA TACCGTAC TCCGTTTGTT chrI:3931906-3931986 11 1.11e-04 CATTATCTTT TACCGTAC CTTTGATCTT chrII:6113324-6113404 66 1.11e-04 CACCATTGCA TACCGTAC CAGAGTT chrII:4604871-4604951 9 1.49e-04 TTGTAGGG tactgtac tctttaaagg chrI:4382110-4382190 29 1.77e-04 GACTCGATGG TACTGTAA CACTTATCTG chrIII:4792741-4792821 4 1.77e-04 GGT TACTGTAA CAGTCATTTG chrIV:11337176-11337256 65 1.77e-04 ACAAACGTGG TACTGTAA TCGTTGCG chrV:15065990-15066070 44 1.77e-04 TCGCAATTTT TACTGTAA ATTGAAAATA chrI:5579290-5579370 7 2.15e-04 GTCAAC TACGGTAT TAGATCAAAA chrIII:8689281-8689361 38 2.15e-04 TCGGGTGTAC TACGGTAT TAAAGGCACA chrIV:6421317-6421397 57 2.15e-04 CTTAAAATTC TACAGTAC TTTATTTCAT chrIII:4205903-4205983 42 2.15e-04 ATCAAATTGA TACAGTAC CCCTAACCTG chrI:3866593-3866673 13 2.15e-04 GTATCAAGTG TACGGTAT TCGTGGTGAG chrIV:8061429-8061509 53 2.15e-04 GCGCCTTTGC TACAGTAC TTGCATTTGT chrII:12919328-12919408 45 2.42e-04 GAAAGTCACC TACAGTAA CCCAGAATTT chrI:2316049-2316129 17 2.42e-04 AAGTGCAGGC TACAGTAA CCCACCTTAA chrIII:7102039-7102119 3 2.42e-04 TC TACAGTAA TCACCCAGCA chrIII:4434577-4434657 21 2.42e-04 CTTGAAAAAC TACAGTAA CCGAGATAAA chrV:2067572-2067652 14 2.42e-04 acaaaaaaaT TACAGTAA CCTTCTTGCA chrV:5717396-5717476 62 2.42e-04 TGCAGGTTCT TACAGTAA CCCGTTGTAA chrV:297749-297829 36 2.61e-04 caccgatgtg taccgtat tcTTGTTTAT chrII:7880566-7880646 21 2.61e-04 GCGCCTTTAA TACCGTAT CCTCTTCACT chrIII:4313204-4313284 17 2.89e-04 TAGTGTGAGA TACTGTAT TAAAGGAGCA chrV:4376330-4376410 38 3.17e-04 TGCAGCCAGC TACAGTAT CTCAAAATCT chrIII:2725781-2725861 8 3.17e-04 aaataaa TACAGTAT TCTTTAAAGG chrIII:4489092-4489172 46 3.35e-04 TTTTCGCAGC GACCGTAG CTAATTTTAT chrIV:8888668-8888748 42 3.35e-04 AAAACAGTGC GACCGTAG TTTATGCCCC chrI:3697838-3697918 69 3.58e-04 GGGAAAGAGA TACGGTGG TTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4320446-4320526 1.3e-05 27_[+1]_45 chrI:12507875-12507955 1.3e-05 6_[+1]_66 chrIII:9818059-9818139 1.3e-05 61_[+1]_11 chrI:5818202-5818282 1.3e-05 68_[+1]_4 chrIII:11290038-11290118 1.3e-05 67_[+1]_5 chrII:10783734-10783814 1.3e-05 33_[+1]_39 chrII:5377588-5377668 1.3e-05 7_[+1]_65 chrI:11970057-11970137 1.3e-05 48_[+1]_24 chrII:14247404-14247484 1.3e-05 31_[+1]_41 chrIII:10877670-10877750 1.3e-05 30_[+1]_42 chrI:519977-520057 1.3e-05 39_[+1]_33 chrI:6950709-6950789 1.3e-05 25_[+1]_47 chrI:6282514-6282594 1.3e-05 12_[+1]_60 chrV:13131652-13131732 1.3e-05 26_[+1]_46 chrI:1014412-1014492 1.3e-05 49_[+1]_23 chrIII:12495817-12495897 2.7e-05 68_[+1]_4 chrI:13310773-13310853 2.7e-05 26_[+1]_46 chrII:14410966-14411046 2.7e-05 34_[+1]_38 chrI:3368683-3368763 2.7e-05 59_[+1]_13 chrII:11968416-11968496 2.7e-05 20_[+1]_52 chrII:9523711-9523791 2.7e-05 25_[+1]_47 chrI:9287243-9287323 4.6e-05 9_[+1]_63 chrV:2008562-2008642 4.6e-05 59_[+1]_13 chrII:5421115-5421195 4.6e-05 5_[+1]_67 chrIII:2858491-2858571 4.6e-05 36_[+1]_36 chrI:8681716-8681796 4.6e-05 71_[+1]_1 chrIV:13512333-13512413 4.6e-05 41_[+1]_31 chrIV:9739119-9739199 4.6e-05 4_[+1]_68 chrII:11577994-11578074 4.6e-05 31_[+1]_41 chrI:5619257-5619337 4.6e-05 70_[+1]_2 chrIII:10600370-10600450 4.6e-05 22_[+1]_50 chrII:12739471-12739551 4.6e-05 61_[+1]_11 chrI:5113862-5113942 4.6e-05 68_[+1]_4 chrIII:9504504-9504584 4.6e-05 28_[+1]_44 chrI:1014633-1014713 4.6e-05 39_[+1]_33 chrII:6519874-6519954 4.6e-05 64_[+1]_8 chrI:3784625-3784705 6.5e-05 50_[+1]_22 chrIII:10320569-10320649 6.5e-05 72_[+1] chrII:6683051-6683131 6.5e-05 12_[+1]_60 chrI:5274335-5274415 6.5e-05 47_[+1]_25 chrI:8751589-8751669 7.9e-05 27_[+1]_45 chrIII:5663700-5663780 7.9e-05 7_[+1]_65 chrV:13560161-13560241 9.8e-05 38_[+1]_34 chrI:9512357-9512437 9.8e-05 59_[+1]_13 chrI:6369854-6369934 9.8e-05 41_[+1]_31 chrI:6003114-6003194 9.8e-05 13_[+1]_59 chrII:6365371-6365451 9.8e-05 24_[+1]_48 chrII:11782663-11782743 0.00011 19_[+1]_53 chrII:7664061-7664141 0.00011 29_[+1]_43 chrI:4765566-4765646 0.00011 5_[+1]_67 chrV:3578958-3579038 0.00011 29_[+1]_43 chrIV:9778170-9778250 0.00011 18_[+1]_54 chrIV:13353397-13353477 0.00011 8_[+1]_64 chrI:3931906-3931986 0.00011 10_[+1]_62 chrII:6113324-6113404 0.00011 65_[+1]_7 chrII:4604871-4604951 0.00015 8_[+1]_64 chrI:4382110-4382190 0.00018 28_[+1]_44 chrIII:4792741-4792821 0.00018 3_[+1]_69 chrIV:11337176-11337256 0.00018 64_[+1]_8 chrV:15065990-15066070 0.00018 43_[+1]_29 chrI:5579290-5579370 0.00022 6_[+1]_66 chrIII:8689281-8689361 0.00022 37_[+1]_35 chrIV:6421317-6421397 0.00022 56_[+1]_16 chrIII:4205903-4205983 0.00022 41_[+1]_31 chrI:3866593-3866673 0.00022 12_[+1]_60 chrIV:8061429-8061509 0.00022 52_[+1]_20 chrII:12919328-12919408 0.00024 44_[+1]_28 chrI:2316049-2316129 0.00024 16_[+1]_56 chrIII:7102039-7102119 0.00024 2_[+1]_70 chrIII:4434577-4434657 0.00024 20_[+1]_52 chrV:2067572-2067652 0.00024 13_[+1]_59 chrV:5717396-5717476 0.00024 61_[+1]_11 chrV:297749-297829 0.00026 35_[+1]_37 chrII:7880566-7880646 0.00026 20_[+1]_52 chrIII:4313204-4313284 0.00029 16_[+1]_56 chrV:4376330-4376410 0.00032 37_[+1]_35 chrIII:2725781-2725861 0.00032 7_[+1]_65 chrIII:4489092-4489172 0.00034 45_[+1]_27 chrIV:8888668-8888748 0.00034 41_[+1]_31 chrI:3697838-3697918 0.00036 68_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TACNGTAG width=8 seqs=80 chrII:4320446-4320526 ( 28) TACGGTAG 1 chrI:12507875-12507955 ( 7) TACGGTAG 1 chrIII:9818059-9818139 ( 62) TACGGTAG 1 chrI:5818202-5818282 ( 69) TACGGTAG 1 chrIII:11290038-11290118 ( 68) TACGGTAG 1 chrII:10783734-10783814 ( 34) TACGGTAG 1 chrII:5377588-5377668 ( 8) TACGGTAG 1 chrI:11970057-11970137 ( 49) TACGGTAG 1 chrII:14247404-14247484 ( 32) TACGGTAG 1 chrIII:10877670-10877750 ( 31) TACGGTAG 1 chrI:519977-520057 ( 40) TACGGTAG 1 chrI:6950709-6950789 ( 26) TACGGTAG 1 chrI:6282514-6282594 ( 13) TACGGTAG 1 chrV:13131652-13131732 ( 27) TACGGTAG 1 chrI:1014412-1014492 ( 50) TACGGTAG 1 chrIII:12495817-12495897 ( 69) TACCGTAG 1 chrI:13310773-13310853 ( 27) TACCGTAG 1 chrII:14410966-14411046 ( 35) TACCGTAG 1 chrI:3368683-3368763 ( 60) TACCGTAG 1 chrII:11968416-11968496 ( 21) TACCGTAG 1 chrII:9523711-9523791 ( 26) TACCGTAG 1 chrI:9287243-9287323 ( 10) TACTGTAG 1 chrV:2008562-2008642 ( 60) TACTGTAG 1 chrII:5421115-5421195 ( 6) TACTGTAG 1 chrIII:2858491-2858571 ( 37) TACTGTAG 1 chrI:8681716-8681796 ( 72) TACTGTAG 1 chrIV:13512333-13512413 ( 42) TACTGTAG 1 chrIV:9739119-9739199 ( 5) TACTGTAG 1 chrII:11577994-11578074 ( 32) TACTGTAG 1 chrI:5619257-5619337 ( 71) TACTGTAG 1 chrIII:10600370-10600450 ( 23) TACTGTAG 1 chrII:12739471-12739551 ( 62) TACTGTAG 1 chrI:5113862-5113942 ( 69) TACTGTAG 1 chrIII:9504504-9504584 ( 29) TACTGTAG 1 chrI:1014633-1014713 ( 40) TACTGTAG 1 chrII:6519874-6519954 ( 65) TACTGTAG 1 chrI:3784625-3784705 ( 51) TACAGTAG 1 chrIII:10320569-10320649 ( 73) TACAGTAG 1 chrII:6683051-6683131 ( 13) TACAGTAG 1 chrI:5274335-5274415 ( 48) TACAGTAG 1 chrI:8751589-8751669 ( 28) TACGGTAC 1 chrIII:5663700-5663780 ( 8) TACGGTAC 1 chrV:13560161-13560241 ( 39) TACGGTAA 1 chrI:9512357-9512437 ( 60) TACGGTAA 1 chrI:6369854-6369934 ( 42) TACGGTAA 1 chrI:6003114-6003194 ( 14) TACGGTAA 1 chrII:6365371-6365451 ( 25) TACGGTAA 1 chrII:11782663-11782743 ( 20) TACCGTAC 1 chrII:7664061-7664141 ( 30) TACCGTAC 1 chrI:4765566-4765646 ( 6) TACCGTAC 1 chrV:3578958-3579038 ( 30) TACCGTAC 1 chrIV:9778170-9778250 ( 19) TACCGTAC 1 chrIV:13353397-13353477 ( 9) TACCGTAC 1 chrI:3931906-3931986 ( 11) TACCGTAC 1 chrII:6113324-6113404 ( 66) TACCGTAC 1 chrII:4604871-4604951 ( 9) TACTGTAC 1 chrI:4382110-4382190 ( 29) TACTGTAA 1 chrIII:4792741-4792821 ( 4) TACTGTAA 1 chrIV:11337176-11337256 ( 65) TACTGTAA 1 chrV:15065990-15066070 ( 44) TACTGTAA 1 chrI:5579290-5579370 ( 7) TACGGTAT 1 chrIII:8689281-8689361 ( 38) TACGGTAT 1 chrIV:6421317-6421397 ( 57) TACAGTAC 1 chrIII:4205903-4205983 ( 42) TACAGTAC 1 chrI:3866593-3866673 ( 13) TACGGTAT 1 chrIV:8061429-8061509 ( 53) TACAGTAC 1 chrII:12919328-12919408 ( 45) TACAGTAA 1 chrI:2316049-2316129 ( 17) TACAGTAA 1 chrIII:7102039-7102119 ( 3) TACAGTAA 1 chrIII:4434577-4434657 ( 21) TACAGTAA 1 chrV:2067572-2067652 ( 14) TACAGTAA 1 chrV:5717396-5717476 ( 62) TACAGTAA 1 chrV:297749-297829 ( 36) TACCGTAT 1 chrII:7880566-7880646 ( 21) TACCGTAT 1 chrIII:4313204-4313284 ( 17) TACTGTAT 1 chrV:4376330-4376410 ( 38) TACAGTAT 1 chrIII:2725781-2725861 ( 8) TACAGTAT 1 chrIII:4489092-4489172 ( 46) GACCGTAG 1 chrIV:8888668-8888748 ( 42) GACCGTAG 1 chrI:3697838-3697918 ( 69) TACGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.0799 E= 2.8e-051 -1297 -1297 -304 170 179 -1297 -1297 -1297 -1297 228 -1297 -1297 -62 13 66 -19 -1297 -1297 228 -1297 -1297 -1297 -1297 174 177 -1297 -404 -1297 -62 -24 139 -158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 2.8e-051 0.000000 0.000000 0.025000 0.975000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.187500 0.225000 0.325000 0.262500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.987500 0.000000 0.012500 0.000000 0.187500 0.175000 0.537500 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 regular expression -------------------------------------------------------------------------------- TAC[GTC]GTAG -------------------------------------------------------------------------------- Time 9.97 secs. ******************************************************************************** ******************************************************************************** MOTIF WSGCGCGH MEME-2 width = 8 sites = 125 llr = 871 E-value = 3.5e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif WSGCGCGH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:::::14 pos.-specific C 143a:a32 probability G 247:a:61 matrix T 42:::::3 bits 2.3 *** 2.1 *** 1.8 *** 1.6 *** Relative 1.4 **** Entropy 1.1 **** (10.1 bits) 0.9 ***** 0.7 ****** 0.5 ****** 0.2 ****** 0.0 -------- Multilevel TGGCGCGA consensus ACC CT sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WSGCGCGH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5448351-5448431 26 1.30e-05 TTTTTTAGGT TGGCGCGA GTTTTTGCAA chrI:11580314-11580394 23 1.30e-05 AGTGAGGTCC TGGCGCGA CAGGGCCCGA chrIII:11290038-11290118 30 1.30e-05 ATACTTCTCC TGGCGCGA TCAGTAAAAA chrV:9382710-9382790 49 1.30e-05 tttcgcgacg tggcgcga aatatttcga chrIII:5727959-5728039 20 1.30e-05 AAAATTTTCA AGGCGCGA TTATGATTTT chrIV:7796852-7796932 68 1.30e-05 TCCGCCGCGG AGGCGCGA AATTT chrV:3578958-3579038 50 1.30e-05 TCGGTGTTGT TGGCGCGA AAATTTTGTT chrIV:7477871-7477951 57 1.30e-05 CGCAAATTTT AGGCGCGA ATTTCTCTAT chrIV:5469896-5469976 71 1.30e-05 TTTCATTTTA AGGCGCGA AT chrII:11968416-11968496 64 1.30e-05 TTGAGGTAAA TGGCGCGA ATTTCGCTC chrI:14734757-14734837 72 1.30e-05 cctacatttg tggcgcga a chrII:5421115-5421195 55 2.60e-05 CCGCTGGAAT ACGCGCGA AAAATGGGAG chrII:8933857-8933937 42 2.60e-05 AAAACTACCA TCGCGCGA ACGCGTACGC chrIV:4447515-4447595 63 2.60e-05 ACGGTAAAAA ACGCGCGA GGGTTGCTGA chrII:11782663-11782743 73 2.60e-05 AAAAATCGAA ACGCGCGA chrV:4890125-4890205 46 2.60e-05 GGCTCGCAAA ACGCGCGA AAAAGTGAAT chrV:13000249-13000329 26 2.60e-05 TTCCTTGTAC ACGCGCGA AAATTTTGCC chrI:7554756-7554836 56 2.60e-05 TTCACTTTTT TCGCGCGA AATTTTTCTT chrI:364207-364287 70 4.87e-05 TTAAATTTCA AGGCGCGT GCA chrI:8839261-8839341 18 4.87e-05 actctcttcc tggcgcgc gcgcgctctc chrII:10393839-10393919 34 4.87e-05 TGCGCTTTGC TGGCGCGC GCGAGCGGCA chrIV:7548362-7548442 44 4.87e-05 tgccgggccg tgGCGCGC GCGCGCATTA chrIII:5939243-5939323 38 4.87e-05 CTACCATGAA AGGCGCGT TCGCATTCGT chrV:13131652-13131732 8 4.87e-05 AAGAAAG TGGCGCGC TCGTCTCAAG chrI:5818202-5818282 42 7.14e-05 TCTAATTTTT TCGCGCGT CGAACCGAAA chrIV:15528985-15529065 36 7.14e-05 CGTATTTTTT TCGCGCGC CGCCGCACGG chrI:519977-520057 23 7.14e-05 TGCACAACGT TCGCGCGC GCGCCGAAGT chrI:8487418-8487498 62 7.14e-05 ACTAAAGTTT ACGCGCGC ACGGCGCGCG chrI:3368683-3368763 10 7.14e-05 CTCAAATTT TCGCGCGC AAATTTGAAA chrI:3198947-3199027 73 7.14e-05 TCTATCGACT TCGCGCGT chrIV:11337176-11337256 33 7.14e-05 AATAATTTTT TCGCGCGC GCGCGCCGTG chrII:13722928-13723008 44 7.14e-05 AAATGCGCTC TCGCGCGC GCCAAGCTAG chrI:13487579-13487659 19 7.14e-05 CTTCACTCTC TCGCGCGT GCCAATGGAG chrII:10926336-10926416 16 9.34e-05 TATTAAAATT TGGCGCCA TGGCGCTTAC chrIII:4792741-4792821 45 9.34e-05 ACGCAATATG TGGCGCCA AAAGGCTTGT chrI:3608402-3608482 3 9.34e-05 GA GCGCGCGA AATTTTTATT chrI:6513902-6513982 35 9.34e-05 CAAATCTTTT GCGCGCGA GTTTCTGAGT chrI:7056636-7056716 70 9.34e-05 AATTTAATAA TGGCGCCA TTT chrIII:4176366-4176446 25 9.34e-05 GTTCAAATCG TGGCGCCA CATGCGTTGT chrI:6282514-6282594 35 9.34e-05 CAAACTGTGT AGGCGCCA TCGGTGTACT chrIII:6442651-6442731 50 1.14e-04 ATTCAAATAT TCGCGCCA TGCGTATTTT chrV:13312444-13312524 13 1.14e-04 TTGCAAAATT TCGCGCCA AGTGCATTCT chrIII:10807408-10807488 7 1.14e-04 TCAGGC GGGCGCGC ACGAATTCAT chrIII:4489092-4489172 20 1.14e-04 AGCACGCGAA ACGCGCCA GCAACAATTT chrII:6198623-6198703 54 1.45e-04 ACAGCATTGT GCGCGCGC TACTTTTAAA chrIV:9741308-9741388 35 1.45e-04 AAAATATGCC GCGCGCGC AGCACTTTGA chrII:12739471-12739551 16 1.45e-04 TAATTTTTTT GCGCGCGC TCACAAGCCA chrI:8681716-8681796 50 1.90e-04 ATACAATGTT ACGCGCCT TTTCGAAACG chrI:4765566-4765646 28 1.90e-04 TTAAATGCAG ACGCGCCC CAATGCACAG chrV:15769237-15769317 73 1.90e-04 TCTGATGCAG TCGCGCCC chrII:9523711-9523791 65 1.90e-04 GTCTTTGTCG AGGCGCGG CGGCGCAA chrII:6519874-6519954 22 1.90e-04 TTCTTATTGA TGCCGCGA AATAATTAGT chrV:6214651-6214731 15 2.36e-04 TTTGTTTTCC TCCCGCGA AATTTCCTTA chrV:6593880-6593960 40 2.36e-04 TTGAATCACC ACGCGCGG GAATCCGGCA chrV:11478075-11478155 6 2.36e-04 TGGCA ACGCGCGG AAACCGTCAA chrIII:9746794-9746874 13 2.36e-04 AGAAAATCAA ATGCGCGA ATTTTTTTGA chrV:10732833-10732913 61 2.67e-04 TTTGCAACAG TGCCGCGC AGTTTCATCA chrI:5619257-5619337 39 2.67e-04 GTTTGAAACA CCGCGCGA AGTTAGATGT chrV:19770912-19770992 60 2.67e-04 tcaattaaaa tgccgcgt ccgcaaaatg chrV:4175774-4175854 54 2.67e-04 GACCCATGTG TGCCGCGT AGCTTCGAAC chrI:3784625-3784705 17 3.36e-04 GCGCTGTGAA ACCCGCGT TTGAAACGAT chrIV:3132389-3132469 42 3.36e-04 TGCGCACCGT ACCCGCGC GGGTGTTTTG chrIII:8101140-8101220 3 3.36e-04 AT CGGCGCGT AAATCGACAC chrIV:13512333-13512413 19 3.36e-04 ATCCAAAATT TCCCGCGC AAAAACGAAA chrIII:8683846-8683926 26 3.36e-04 GGCCTAGGAT TTGCGCGT GGCAAAAATA chrI:6565970-6566050 15 3.36e-04 TAAAAGAAAT TCCCGCGT AATTCTTTGA chrI:3866593-3866673 31 3.36e-04 TCGTGGTGAG ACCCGCGC CCCCGCGCAA chrIV:8061429-8061509 39 3.36e-04 GTGCGCTCTG TTGCGCGC CTTTGCTACA chrI:6003114-6003194 32 3.36e-04 GCGTTGCGGG ACCCGCGT GCACACAAAA chrIII:9617091-9617171 11 3.51e-04 TTTCGCGCTT CCGCGCGC TTTGAAAAAC chrIII:11118262-11118342 53 3.67e-04 GTGGGTTGTC GGCCGCGA TATATTACCC chrIII:7165428-7165508 72 4.04e-04 GGACCACTTT TGCCGCCA A chrIV:379732-379812 28 4.04e-04 ATATTCAAAC TGCCGCCA CCAATTGGCG chrV:14992897-14992977 4 4.04e-04 TTT TGCCGCCA GCCGCAATGG chrII:6365371-6365451 4 4.04e-04 AAT TGCCGCCA TGACCCCGTG chrIII:13423586-13423666 64 4.57e-04 TAATTTTCAA CGGCGCCA GTTTGAACT chrII:10197250-10197330 40 4.57e-04 CTCTGTGGAG CGGCGCCA GAAATTGAAT chrIII:9091553-9091633 33 4.57e-04 GAGCTGTGCA CGGCGCCA AAATTTATTT chrV:11554472-11554552 2 4.57e-04 C TCGCGCCG GCGCTCGATT chrI:7695295-7695375 35 5.04e-04 TTCGCCACCC GTGCGCGC ATTTCTGGAA chrII:7880566-7880646 66 5.04e-04 AAAAATGTTT GCCCGCGT TCTTTTG chrV:16793482-16793562 24 5.04e-04 CATGTACCTC GTGCGCGT GATCTCGCAA chrIV:7958330-7958410 57 5.04e-04 ACAAAGGGTG GTGCGCGC TCTCTCACAT chrII:10935467-10935547 37 5.04e-04 aaaaatgcgg gcccgcgt tccaagcgag chrI:9287243-9287323 52 5.77e-04 CAATTCGAAT TCCCGCCT AAATGCGAGT chrII:14218374-14218454 59 5.77e-04 ATGTTGGGCA ATGCGCCT TTAAGGAGTA chrV:13660350-13660430 19 5.77e-04 CGGTATTTGA ATGCGCCT TTAAATTGTT chrII:4229262-4229342 62 5.77e-04 AATACCAGCC ATGCGCCT TTAAACAAGT chrI:12903698-12903778 11 5.77e-04 ATAGCAAAAC ATGCGCCT TTAAATGGGA chrII:7037814-7037894 47 5.77e-04 GCGGCACTTC ATGCGCCT TTAGTTAATC chrII:14245031-14245111 73 5.77e-04 AATTTTGCGT ATGCGCCT chrIV:6421317-6421397 41 5.77e-04 TAACGTCGAA ATGCGCCT TAAAATTCTA chrV:2067572-2067652 38 5.77e-04 TGCAGTTCTC ATGCGCCT TTAGCCTTTC chrI:1014633-1014713 23 5.77e-04 CTTTTTGCCG ATGCGCCT TTAACTGGAT chrI:1014412-1014492 19 5.77e-04 CTGTTTGAGC ATGCGCCT TTAAATTTGT chrI:2316049-2316129 66 6.52e-04 CAGATGGTCT CGCCGCGA TGAGACT chrI:6467674-6467754 13 6.52e-04 GAGTACGCGA TTGCGCGG CCTAGGAAAC chrIII:2858491-2858571 71 6.52e-04 AAAATTGCGT ACCCGCGG GA chrV:297749-297829 73 6.52e-04 TAAATAATTT TTCCGCGA chrI:6369854-6369934 32 6.52e-04 GCATGGGTCT CGCCGCGA GATACGGTAA chrV:20476645-20476725 11 7.80e-04 GAAACATCAA AGGCGCAT AGCTGCCAAC chrI:12507875-12507955 21 7.80e-04 GTAGATTTAA AGGCGCAT GCCTAAATAT chrIV:12194810-12194890 38 7.80e-04 GAGGTTTCAA AGGCGCAT GCAGTAATTC chrII:2919563-2919643 72 7.80e-04 CAAATTTTAA AGGCGCAT G chrIII:10877670-10877750 45 7.80e-04 GTAGTTTTAA AGGCGCAT GGCCGGGGAT chrII:8253336-8253416 16 7.80e-04 GGTTCACGCA AGGCGCAT TGCACACTTT chrI:9314897-9314977 44 7.80e-04 AATTTTGAaa aggcgcac agattaattt chrII:4604871-4604951 24 7.80e-04 tactctttaa aggcgcac acctttGAGA chrII:14410966-14411046 10 8.39e-04 GGTCTCGCA ACGCGCAC ACATATAAAA chrIV:8888668-8888748 57 8.39e-04 TAGTTTATGC CCCCGCGT AATATGAAGG chrII:4320446-4320526 9 8.62e-04 AAAACTTT GTGCGCCT TTAAAAATGG chrV:20090863-20090943 11 8.62e-04 ACAACACACT GGCCGCGG CCTAGAAAAC chrI:5827834-5827914 37 8.62e-04 AATAAAAGTC GTGCGCCT TTAAAAATTT chrV:14457215-14457295 66 8.62e-04 GATTTGATGT GTGCGCCT TTAAAGA chrI:10422378-10422458 2 8.92e-04 C TGCCGCCG TGGGTCAAGA chrII:5819828-5819908 73 8.92e-04 CTGAAAACTC GTCCGCGA chrI:10106262-10106342 34 8.92e-04 GTTCTCCATG GGGCGCAA CTGCAGTGGC chrV:4376330-4376410 1 9.48e-04 . GCGCGCAA AAATTCAAAT chrI:128339-128419 32 9.48e-04 TTCATTTTTT CGGCGCCG AAAATTTTCA chrIII:7104199-7104279 20 9.48e-04 ATTTGAATTT TCCCGCCG GAGGTCAAAA chrIV:2655170-2655250 72 1.04e-03 ACCTTGCGGG TTCCGCCT G chrI:3269150-3269230 50 1.10e-03 CTTTGTTTAA AGGCGCAG AGGTTAAGCG chrIII:5207126-5207206 56 1.19e-03 CGCCCAAAAG CTCCGCGA CGCGTGCTGC chrIV:13503603-13503683 16 1.24e-03 TTTCTGCAAC TGCCGCAC GGTTTTAAAA chrI:3265356-3265436 62 1.38e-03 TGTGAACCTA GTCCGCGG CCATGACCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WSGCGCGH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5448351-5448431 1.3e-05 25_[+2]_47 chrI:11580314-11580394 1.3e-05 22_[+2]_50 chrIII:11290038-11290118 1.3e-05 29_[+2]_43 chrV:9382710-9382790 1.3e-05 48_[+2]_24 chrIII:5727959-5728039 1.3e-05 19_[+2]_53 chrIV:7796852-7796932 1.3e-05 67_[+2]_5 chrV:3578958-3579038 1.3e-05 49_[+2]_23 chrIV:7477871-7477951 1.3e-05 56_[+2]_16 chrIV:5469896-5469976 1.3e-05 70_[+2]_2 chrII:11968416-11968496 1.3e-05 63_[+2]_9 chrI:14734757-14734837 1.3e-05 71_[+2]_1 chrII:5421115-5421195 2.6e-05 54_[+2]_18 chrII:8933857-8933937 2.6e-05 41_[+2]_31 chrIV:4447515-4447595 2.6e-05 62_[+2]_10 chrII:11782663-11782743 2.6e-05 72_[+2] chrV:4890125-4890205 2.6e-05 45_[+2]_27 chrV:13000249-13000329 2.6e-05 25_[+2]_47 chrI:7554756-7554836 2.6e-05 55_[+2]_17 chrI:364207-364287 4.9e-05 69_[+2]_3 chrI:8839261-8839341 4.9e-05 17_[+2]_55 chrII:10393839-10393919 4.9e-05 33_[+2]_39 chrIV:7548362-7548442 4.9e-05 43_[+2]_29 chrIII:5939243-5939323 4.9e-05 37_[+2]_35 chrV:13131652-13131732 4.9e-05 7_[+2]_65 chrI:5818202-5818282 7.1e-05 41_[+2]_31 chrIV:15528985-15529065 7.1e-05 35_[+2]_37 chrI:519977-520057 7.1e-05 22_[+2]_50 chrI:8487418-8487498 7.1e-05 61_[+2]_11 chrI:3368683-3368763 7.1e-05 9_[+2]_63 chrI:3198947-3199027 7.1e-05 72_[+2] chrIV:11337176-11337256 7.1e-05 32_[+2]_40 chrII:13722928-13723008 7.1e-05 43_[+2]_29 chrI:13487579-13487659 7.1e-05 18_[+2]_54 chrII:10926336-10926416 9.3e-05 15_[+2]_57 chrIII:4792741-4792821 9.3e-05 44_[+2]_28 chrI:3608402-3608482 9.3e-05 2_[+2]_70 chrI:6513902-6513982 9.3e-05 34_[+2]_38 chrI:7056636-7056716 9.3e-05 69_[+2]_3 chrIII:4176366-4176446 9.3e-05 24_[+2]_48 chrI:6282514-6282594 9.3e-05 34_[+2]_38 chrIII:6442651-6442731 0.00011 49_[+2]_23 chrV:13312444-13312524 0.00011 12_[+2]_60 chrIII:10807408-10807488 0.00011 6_[+2]_66 chrIII:4489092-4489172 0.00011 19_[+2]_53 chrII:6198623-6198703 0.00015 53_[+2]_19 chrIV:9741308-9741388 0.00015 34_[+2]_38 chrII:12739471-12739551 0.00015 15_[+2]_57 chrI:8681716-8681796 0.00019 49_[+2]_23 chrI:4765566-4765646 0.00019 27_[+2]_45 chrV:15769237-15769317 0.00019 72_[+2] chrII:9523711-9523791 0.00019 64_[+2]_8 chrII:6519874-6519954 0.00019 21_[+2]_51 chrV:6214651-6214731 0.00024 14_[+2]_58 chrV:6593880-6593960 0.00024 39_[+2]_33 chrV:11478075-11478155 0.00024 5_[+2]_67 chrIII:9746794-9746874 0.00024 12_[+2]_60 chrV:10732833-10732913 0.00027 60_[+2]_12 chrI:5619257-5619337 0.00027 38_[+2]_34 chrV:19770912-19770992 0.00027 59_[+2]_13 chrV:4175774-4175854 0.00027 53_[+2]_19 chrI:3784625-3784705 0.00034 16_[+2]_56 chrIV:3132389-3132469 0.00034 41_[+2]_31 chrIII:8101140-8101220 0.00034 2_[+2]_70 chrIV:13512333-13512413 0.00034 18_[+2]_54 chrIII:8683846-8683926 0.00034 25_[+2]_47 chrI:6565970-6566050 0.00034 14_[+2]_58 chrI:3866593-3866673 0.00034 30_[+2]_42 chrIV:8061429-8061509 0.00034 38_[+2]_34 chrI:6003114-6003194 0.00034 31_[+2]_41 chrIII:9617091-9617171 0.00035 10_[+2]_62 chrIII:11118262-11118342 0.00037 52_[+2]_20 chrIII:7165428-7165508 0.0004 71_[+2]_1 chrIV:379732-379812 0.0004 27_[+2]_45 chrV:14992897-14992977 0.0004 3_[+2]_69 chrII:6365371-6365451 0.0004 3_[+2]_69 chrIII:13423586-13423666 0.00046 63_[+2]_9 chrII:10197250-10197330 0.00046 39_[+2]_33 chrIII:9091553-9091633 0.00046 32_[+2]_40 chrV:11554472-11554552 0.00046 1_[+2]_71 chrI:7695295-7695375 0.0005 34_[+2]_38 chrII:7880566-7880646 0.0005 65_[+2]_7 chrV:16793482-16793562 0.0005 23_[+2]_49 chrIV:7958330-7958410 0.0005 56_[+2]_16 chrII:10935467-10935547 0.0005 36_[+2]_36 chrI:9287243-9287323 0.00058 51_[+2]_21 chrII:14218374-14218454 0.00058 58_[+2]_14 chrV:13660350-13660430 0.00058 18_[+2]_54 chrII:4229262-4229342 0.00058 61_[+2]_11 chrI:12903698-12903778 0.00058 10_[+2]_62 chrII:7037814-7037894 0.00058 46_[+2]_26 chrII:14245031-14245111 0.00058 72_[+2] chrIV:6421317-6421397 0.00058 40_[+2]_32 chrV:2067572-2067652 0.00058 37_[+2]_35 chrI:1014633-1014713 0.00058 22_[+2]_50 chrI:1014412-1014492 0.00058 18_[+2]_54 chrI:2316049-2316129 0.00065 65_[+2]_7 chrI:6467674-6467754 0.00065 12_[+2]_60 chrIII:2858491-2858571 0.00065 70_[+2]_2 chrV:297749-297829 0.00065 72_[+2] chrI:6369854-6369934 0.00065 31_[+2]_41 chrV:20476645-20476725 0.00078 10_[+2]_62 chrI:12507875-12507955 0.00078 20_[+2]_52 chrIV:12194810-12194890 0.00078 37_[+2]_35 chrII:2919563-2919643 0.00078 71_[+2]_1 chrIII:10877670-10877750 0.00078 44_[+2]_28 chrII:8253336-8253416 0.00078 15_[+2]_57 chrI:9314897-9314977 0.00078 43_[+2]_29 chrII:4604871-4604951 0.00078 23_[+2]_49 chrII:14410966-14411046 0.00084 9_[+2]_63 chrIV:8888668-8888748 0.00084 56_[+2]_16 chrII:4320446-4320526 0.00086 8_[+2]_64 chrV:20090863-20090943 0.00086 10_[+2]_62 chrI:5827834-5827914 0.00086 36_[+2]_36 chrV:14457215-14457295 0.00086 65_[+2]_7 chrI:10422378-10422458 0.00089 1_[+2]_71 chrII:5819828-5819908 0.00089 72_[+2] chrI:10106262-10106342 0.00089 33_[+2]_39 chrV:4376330-4376410 0.00095 [+2]_72 chrI:128339-128419 0.00095 31_[+2]_41 chrIII:7104199-7104279 0.00095 19_[+2]_53 chrIV:2655170-2655250 0.001 71_[+2]_1 chrI:3269150-3269230 0.0011 49_[+2]_23 chrIII:5207126-5207206 0.0012 55_[+2]_17 chrIV:13503603-13503683 0.0012 15_[+2]_57 chrI:3265356-3265436 0.0014 61_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WSGCGCGH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WSGCGCGH width=8 seqs=125 chrIII:5448351-5448431 ( 26) TGGCGCGA 1 chrI:11580314-11580394 ( 23) TGGCGCGA 1 chrIII:11290038-11290118 ( 30) TGGCGCGA 1 chrV:9382710-9382790 ( 49) TGGCGCGA 1 chrIII:5727959-5728039 ( 20) AGGCGCGA 1 chrIV:7796852-7796932 ( 68) AGGCGCGA 1 chrV:3578958-3579038 ( 50) TGGCGCGA 1 chrIV:7477871-7477951 ( 57) AGGCGCGA 1 chrIV:5469896-5469976 ( 71) AGGCGCGA 1 chrII:11968416-11968496 ( 64) TGGCGCGA 1 chrI:14734757-14734837 ( 72) TGGCGCGA 1 chrII:5421115-5421195 ( 55) ACGCGCGA 1 chrII:8933857-8933937 ( 42) TCGCGCGA 1 chrIV:4447515-4447595 ( 63) ACGCGCGA 1 chrII:11782663-11782743 ( 73) ACGCGCGA 1 chrV:4890125-4890205 ( 46) ACGCGCGA 1 chrV:13000249-13000329 ( 26) ACGCGCGA 1 chrI:7554756-7554836 ( 56) TCGCGCGA 1 chrI:364207-364287 ( 70) AGGCGCGT 1 chrI:8839261-8839341 ( 18) TGGCGCGC 1 chrII:10393839-10393919 ( 34) TGGCGCGC 1 chrIV:7548362-7548442 ( 44) TGGCGCGC 1 chrIII:5939243-5939323 ( 38) AGGCGCGT 1 chrV:13131652-13131732 ( 8) TGGCGCGC 1 chrI:5818202-5818282 ( 42) TCGCGCGT 1 chrIV:15528985-15529065 ( 36) TCGCGCGC 1 chrI:519977-520057 ( 23) TCGCGCGC 1 chrI:8487418-8487498 ( 62) ACGCGCGC 1 chrI:3368683-3368763 ( 10) TCGCGCGC 1 chrI:3198947-3199027 ( 73) TCGCGCGT 1 chrIV:11337176-11337256 ( 33) TCGCGCGC 1 chrII:13722928-13723008 ( 44) TCGCGCGC 1 chrI:13487579-13487659 ( 19) TCGCGCGT 1 chrII:10926336-10926416 ( 16) TGGCGCCA 1 chrIII:4792741-4792821 ( 45) TGGCGCCA 1 chrI:3608402-3608482 ( 3) GCGCGCGA 1 chrI:6513902-6513982 ( 35) GCGCGCGA 1 chrI:7056636-7056716 ( 70) TGGCGCCA 1 chrIII:4176366-4176446 ( 25) TGGCGCCA 1 chrI:6282514-6282594 ( 35) AGGCGCCA 1 chrIII:6442651-6442731 ( 50) TCGCGCCA 1 chrV:13312444-13312524 ( 13) TCGCGCCA 1 chrIII:10807408-10807488 ( 7) GGGCGCGC 1 chrIII:4489092-4489172 ( 20) ACGCGCCA 1 chrII:6198623-6198703 ( 54) GCGCGCGC 1 chrIV:9741308-9741388 ( 35) GCGCGCGC 1 chrII:12739471-12739551 ( 16) GCGCGCGC 1 chrI:8681716-8681796 ( 50) ACGCGCCT 1 chrI:4765566-4765646 ( 28) ACGCGCCC 1 chrV:15769237-15769317 ( 73) TCGCGCCC 1 chrII:9523711-9523791 ( 65) AGGCGCGG 1 chrII:6519874-6519954 ( 22) TGCCGCGA 1 chrV:6214651-6214731 ( 15) TCCCGCGA 1 chrV:6593880-6593960 ( 40) ACGCGCGG 1 chrV:11478075-11478155 ( 6) ACGCGCGG 1 chrIII:9746794-9746874 ( 13) ATGCGCGA 1 chrV:10732833-10732913 ( 61) TGCCGCGC 1 chrI:5619257-5619337 ( 39) CCGCGCGA 1 chrV:19770912-19770992 ( 60) TGCCGCGT 1 chrV:4175774-4175854 ( 54) TGCCGCGT 1 chrI:3784625-3784705 ( 17) ACCCGCGT 1 chrIV:3132389-3132469 ( 42) ACCCGCGC 1 chrIII:8101140-8101220 ( 3) CGGCGCGT 1 chrIV:13512333-13512413 ( 19) TCCCGCGC 1 chrIII:8683846-8683926 ( 26) TTGCGCGT 1 chrI:6565970-6566050 ( 15) TCCCGCGT 1 chrI:3866593-3866673 ( 31) ACCCGCGC 1 chrIV:8061429-8061509 ( 39) TTGCGCGC 1 chrI:6003114-6003194 ( 32) ACCCGCGT 1 chrIII:9617091-9617171 ( 11) CCGCGCGC 1 chrIII:11118262-11118342 ( 53) GGCCGCGA 1 chrIII:7165428-7165508 ( 72) TGCCGCCA 1 chrIV:379732-379812 ( 28) TGCCGCCA 1 chrV:14992897-14992977 ( 4) TGCCGCCA 1 chrII:6365371-6365451 ( 4) TGCCGCCA 1 chrIII:13423586-13423666 ( 64) CGGCGCCA 1 chrII:10197250-10197330 ( 40) CGGCGCCA 1 chrIII:9091553-9091633 ( 33) CGGCGCCA 1 chrV:11554472-11554552 ( 2) TCGCGCCG 1 chrI:7695295-7695375 ( 35) GTGCGCGC 1 chrII:7880566-7880646 ( 66) GCCCGCGT 1 chrV:16793482-16793562 ( 24) GTGCGCGT 1 chrIV:7958330-7958410 ( 57) GTGCGCGC 1 chrII:10935467-10935547 ( 37) GCCCGCGT 1 chrI:9287243-9287323 ( 52) TCCCGCCT 1 chrII:14218374-14218454 ( 59) ATGCGCCT 1 chrV:13660350-13660430 ( 19) ATGCGCCT 1 chrII:4229262-4229342 ( 62) ATGCGCCT 1 chrI:12903698-12903778 ( 11) ATGCGCCT 1 chrII:7037814-7037894 ( 47) ATGCGCCT 1 chrII:14245031-14245111 ( 73) ATGCGCCT 1 chrIV:6421317-6421397 ( 41) ATGCGCCT 1 chrV:2067572-2067652 ( 38) ATGCGCCT 1 chrI:1014633-1014713 ( 23) ATGCGCCT 1 chrI:1014412-1014492 ( 19) ATGCGCCT 1 chrI:2316049-2316129 ( 66) CGCCGCGA 1 chrI:6467674-6467754 ( 13) TTGCGCGG 1 chrIII:2858491-2858571 ( 71) ACCCGCGG 1 chrV:297749-297829 ( 73) TTCCGCGA 1 chrI:6369854-6369934 ( 32) CGCCGCGA 1 chrV:20476645-20476725 ( 11) AGGCGCAT 1 chrI:12507875-12507955 ( 21) AGGCGCAT 1 chrIV:12194810-12194890 ( 38) AGGCGCAT 1 chrII:2919563-2919643 ( 72) AGGCGCAT 1 chrIII:10877670-10877750 ( 45) AGGCGCAT 1 chrII:8253336-8253416 ( 16) AGGCGCAT 1 chrI:9314897-9314977 ( 44) AGGCGCAC 1 chrII:4604871-4604951 ( 24) AGGCGCAC 1 chrII:14410966-14411046 ( 10) ACGCGCAC 1 chrIV:8888668-8888748 ( 57) CCCCGCGT 1 chrII:4320446-4320526 ( 9) GTGCGCCT 1 chrV:20090863-20090943 ( 11) GGCCGCGG 1 chrI:5827834-5827914 ( 37) GTGCGCCT 1 chrV:14457215-14457295 ( 66) GTGCGCCT 1 chrI:10422378-10422458 ( 2) TGCCGCCG 1 chrII:5819828-5819908 ( 73) GTCCGCGA 1 chrI:10106262-10106342 ( 34) GGGCGCAA 1 chrV:4376330-4376410 ( 1) GCGCGCAA 1 chrI:128339-128419 ( 32) CGGCGCCG 1 chrIII:7104199-7104279 ( 20) TCCCGCCG 1 chrIV:2655170-2655250 ( 72) TTCCGCCT 1 chrI:3269150-3269230 ( 50) AGGCGCAG 1 chrIII:5207126-5207206 ( 56) CTCCGCGA 1 chrIV:13503603-13503683 ( 16) TGCCGCAC 1 chrI:3265356-3265436 ( 62) GTCCGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WSGCGCGH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18043 E= 3.5e-050 32 -123 -36 39 -1361 87 104 -58 -1361 31 185 -1361 -1361 228 -1361 -1361 -1361 -1361 228 -1361 -1361 228 -1361 -1361 -147 52 154 -1361 38 12 -110 2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WSGCGCGH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 125 E= 3.5e-050 0.360000 0.088000 0.160000 0.392000 0.000000 0.376000 0.424000 0.200000 0.000000 0.256000 0.744000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.104000 0.296000 0.600000 0.000000 0.376000 0.224000 0.096000 0.304000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WSGCGCGH MEME-2 regular expression -------------------------------------------------------------------------------- [TA][GCT][GC]CGC[GC][ATC] -------------------------------------------------------------------------------- Time 15.25 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCTCGC MEME-3 width = 8 sites = 24 llr = 229 E-value = 3.7e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::13 pos.-specific C :::a29:6 probability G aa::::9: matrix T ::a:81:2 bits 2.3 ** * 2.1 ** * 1.8 **** 1.6 **** ** Relative 1.4 **** ** Entropy 1.1 ******* (13.8 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCTCGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20476645-20476725 37 6.83e-06 ACGTGTCATG GGTCTCGC AGCGAAGCAC chrII:12919328-12919408 24 6.83e-06 GTTGTGCTCG GGTCTCGC AGCGAAAGTC chrIV:12194810-12194890 64 6.83e-06 TCTTGCGTGT GGTCTCGC CACGATTTC chrIII:4313204-4313284 54 6.83e-06 GGAACAAACG GGTCTCGC CGAGATTTAA chrI:9314897-9314977 67 6.83e-06 aatttgaaca ggtctcgc cactcg chrII:14410966-14411046 1 6.83e-06 . GGTCTCGC AACGCGCACA chrIII:2102072-2102152 9 1.64e-05 GTTCCTTG GGTCTCGA AGGGAACACC chrI:8839261-8839341 61 1.64e-05 TCAATTGACC GGTCTCGA AGCGACTGAT chrII:7664061-7664141 16 1.64e-05 TTTTGATGGA GGTCTCGA AGCGAATACC chrI:3198947-3199027 40 1.64e-05 AAGAGGCGCG GGTCTCGA AGCGATCAAC chrII:8933857-8933937 20 2.11e-05 TTTGGCTCAG GGTCCCGC GACGAAAACT chrIII:5939243-5939323 3 2.11e-05 TG GGTCCCGC CACGAAACCG chrII:6198623-6198703 23 3.10e-05 TTTCTGTTAA GGTCTCGT TGGGTGATTC chrIII:10320569-10320649 59 3.10e-05 TCGGGTCTCG GGTCTCGT ACCAACTACA chrIII:2725781-2725861 50 3.10e-05 CTTAGGCTCT GGTCTCGT GGCGAAAAAA chrIV:7796852-7796932 35 3.10e-05 AACATATTTC GGTCTCGT AGCGAACGCG chrII:10783734-10783814 7 5.71e-05 GGCAAG GGTCTTGC AGCGATTCAT chrII:6491314-6491394 69 5.71e-05 TATTCACACA GGTCTCAC CACG chrII:13522260-13522340 21 5.71e-05 TGGAAAAGAG GGTCCCGA GAGGGGCCCG chrI:7056636-7056716 36 5.71e-05 tctgcTTAAT GGTCCCGA CATGTTTTAA chrI:8487418-8487498 28 5.71e-05 CGCTGCAGTG GGTCTCAC CGCGAAAGTG chrIII:4782216-4782296 65 5.71e-05 ATTGCGGCAT GGTCTTGC TAAAAAAT chrII:11968416-11968496 7 5.71e-05 TTGCAG GGTCTCAC CACGACTACC chrI:7554756-7554836 12 5.71e-05 GTTACGAGTG GGTCTTGC AGCGAAAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20476645-20476725 6.8e-06 36_[+3]_36 chrII:12919328-12919408 6.8e-06 23_[+3]_49 chrIV:12194810-12194890 6.8e-06 63_[+3]_9 chrIII:4313204-4313284 6.8e-06 53_[+3]_19 chrI:9314897-9314977 6.8e-06 66_[+3]_6 chrII:14410966-14411046 6.8e-06 [+3]_72 chrIII:2102072-2102152 1.6e-05 8_[+3]_64 chrI:8839261-8839341 1.6e-05 60_[+3]_12 chrII:7664061-7664141 1.6e-05 15_[+3]_57 chrI:3198947-3199027 1.6e-05 39_[+3]_33 chrII:8933857-8933937 2.1e-05 19_[+3]_53 chrIII:5939243-5939323 2.1e-05 2_[+3]_70 chrII:6198623-6198703 3.1e-05 22_[+3]_50 chrIII:10320569-10320649 3.1e-05 58_[+3]_14 chrIII:2725781-2725861 3.1e-05 49_[+3]_23 chrIV:7796852-7796932 3.1e-05 34_[+3]_38 chrII:10783734-10783814 5.7e-05 6_[+3]_66 chrII:6491314-6491394 5.7e-05 68_[+3]_4 chrII:13522260-13522340 5.7e-05 20_[+3]_52 chrI:7056636-7056716 5.7e-05 35_[+3]_37 chrI:8487418-8487498 5.7e-05 27_[+3]_45 chrIII:4782216-4782296 5.7e-05 64_[+3]_8 chrII:11968416-11968496 5.7e-05 6_[+3]_66 chrI:7554756-7554836 5.7e-05 11_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCTCGC width=8 seqs=24 chrV:20476645-20476725 ( 37) GGTCTCGC 1 chrII:12919328-12919408 ( 24) GGTCTCGC 1 chrIV:12194810-12194890 ( 64) GGTCTCGC 1 chrIII:4313204-4313284 ( 54) GGTCTCGC 1 chrI:9314897-9314977 ( 67) GGTCTCGC 1 chrII:14410966-14411046 ( 1) GGTCTCGC 1 chrIII:2102072-2102152 ( 9) GGTCTCGA 1 chrI:8839261-8839341 ( 61) GGTCTCGA 1 chrII:7664061-7664141 ( 16) GGTCTCGA 1 chrI:3198947-3199027 ( 40) GGTCTCGA 1 chrII:8933857-8933937 ( 20) GGTCCCGC 1 chrIII:5939243-5939323 ( 3) GGTCCCGC 1 chrII:6198623-6198703 ( 23) GGTCTCGT 1 chrIII:10320569-10320649 ( 59) GGTCTCGT 1 chrIII:2725781-2725861 ( 50) GGTCTCGT 1 chrIV:7796852-7796932 ( 35) GGTCTCGT 1 chrII:10783734-10783814 ( 7) GGTCTTGC 1 chrII:6491314-6491394 ( 69) GGTCTCAC 1 chrII:13522260-13522340 ( 21) GGTCCCGA 1 chrI:7056636-7056716 ( 36) GGTCCCGA 1 chrI:8487418-8487498 ( 28) GGTCTCAC 1 chrIII:4782216-4782296 ( 65) GGTCTTGC 1 chrII:11968416-11968496 ( 7) GGTCTCAC 1 chrI:7554756-7554836 ( 12) GGTCTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 3.7e-007 -1123 -1123 228 -1123 -1123 -1123 228 -1123 -1123 -1123 -1123 174 -1123 228 -1123 -1123 -1123 -31 -1123 148 -1123 209 -1123 -126 -121 -1123 209 -1123 -21 150 -1123 -84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.7e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.875000 0.000000 0.125000 0.125000 0.000000 0.875000 0.000000 0.250000 0.583333 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-3 regular expression -------------------------------------------------------------------------------- GGTCTCG[CA] -------------------------------------------------------------------------------- Time 18.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTAAAA MEME-4 width = 8 sites = 73 llr = 524 E-value = 1.8e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3::17aa8 pos.-specific C :::2:::: probability G :::13::: matrix T 7aa6:::2 bits 2.3 2.1 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.1 ** *** (10.4 bits) 0.9 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTAAAA consensus A CG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:13521430-13521510 57 5.58e-05 ATTTTCACTT TTTTAAAA TTATCCCTCT chrV:13560161-13560241 10 5.58e-05 taaaaagta ttttaaaa agtattGCCA chrII:10884499-10884579 55 5.58e-05 AAGAAAATAA TTTTAAAA ATTAGCGGGG chrIII:1603921-1604001 65 5.58e-05 GGCGGTGAAT TTTTAAAA TGTGATCG chrI:347207-347287 34 5.58e-05 AAAATCAACA TTTTAAAA GATTTTTACA chrIV:13503603-13503683 26 5.58e-05 TGCCGCACGG TTTTAAAA TTATTTTTTC chrII:6198623-6198703 65 5.58e-05 CGCGCGCTAC TTTTAAAA ATTTTTCA chrI:11970057-11970137 26 5.58e-05 GTAGTTAGCT TTTTAAAA CTACTTTTGC chrII:6491314-6491394 30 5.58e-05 TTCCTTCATT TTTTAAAA ATATTTAAAG chrII:7880566-7880646 52 5.58e-05 GGGAAATCTG TTTTAAAA ATGTTTGCCC chrIII:9091553-9091633 55 5.58e-05 TTATTTTGAG TTTTAAAA TGAttttctt chrII:2919563-2919643 19 5.58e-05 AAAAATTAAA TTTTAAAA GCAGTTTTAG chrV:16793482-16793562 72 5.58e-05 AAAATAGGGT TTTTAAAA T chrIII:11869673-11869753 65 5.58e-05 CTATTATTAA TTTTAAAA CCGAGTGA chrIII:10320367-10320447 54 5.58e-05 CTCCGCACGG TTTTAAAA TTATTTTTTC chrIII:3331906-3331986 48 9.55e-05 CGATTTTTTT TTTTGAAA TTCCAgaaat chrIII:4230220-4230300 48 9.55e-05 aaaaaaaTTT TTTTGAAA AATGAAAAGT chrIV:11695776-11695856 47 9.55e-05 GAAAAATTAT TTTTGAAA TAAAAACTGA chrI:9314897-9314977 36 9.55e-05 aataTCGTAA TTTTGAaa aggcgcacag chrIII:5663700-5663780 54 9.55e-05 gggaaatttt ttttgaaa attaaaatct chrIII:9746794-9746874 25 9.55e-05 GCGCGAATTT TTTTGAAA GGACGTTGTT chrIII:4785341-4785421 27 1.34e-04 TTGTTGCATT TTTCAAAA GAAAAAACGT chrII:5377588-5377668 17 1.34e-04 CTACGGTAGT TTTCAAAA TACGCGGTTC chrV:8413792-8413872 52 1.34e-04 AAGTTTTTTT TTTCAAAA TTTCTCAAAA chrIII:4782216-4782296 18 1.34e-04 ACCGTATTAA TTTCAAAA ATATGCAACC chrII:13722928-13723008 71 1.34e-04 GACGCGCGTA TTTCAAAA TT chrI:364207-364287 16 1.88e-04 CAAGATAATA ATTTAAAA CAATTAAAAA chrV:4376330-4376410 17 1.88e-04 AAAAATTCAA ATTTAAAA GTTTGCAGCC chrI:3265356-3265436 9 1.88e-04 ATTTTTTA ATTTAAAA TTTTTTAATT chrI:3608402-3608482 25 1.88e-04 TTTATTTGGA ATTTAAAA TTAATTTCCT chrI:14104401-14104481 54 1.88e-04 TATGATATGA ATTTAAAA AATCTCGGGC chrI:6513902-6513982 61 1.88e-04 GTTTCCATTC ATTTAAAA TTTTTTGGTT chrIV:7958330-7958410 13 1.88e-04 TTTTTAGCAT ATTTAAAA ATTGTTTCAT chrV:10018479-10018559 56 1.88e-04 TGTTGTTTAC ATTTAAAA AGAGTAAACA chrIII:5207126-5207206 33 2.15e-04 CAACAACATT TTTCGAAA TATCTCGCCC chrI:12806842-12806922 36 2.15e-04 AAAAAAGAAA TTTCGAAA TTGTTTTCGA chrIII:10506049-10506129 9 2.15e-04 GGAAGAAC TTTCGAAA CCGAAGACTC chrI:8681716-8681796 58 2.15e-04 TTACGCGCCT TTTCGAAA CGATGTTACT chrV:9382710-9382790 61 2.15e-04 gcgcgaaata tttcgaaa tcaaatttgt chrI:12961971-12962051 67 3.11e-04 AGCAAATAGA ATTTGAAA TAAAAC chrII:4911760-4911840 15 3.11e-04 TGAAAAAAAA TTTTAAAT TTAAATGaaa chrI:9512357-9512437 45 3.11e-04 TTTTGATCTT TTTTAAAT TGTTGACTAC chrI:3368683-3368763 20 3.11e-04 TCGCGCGCAA ATTTGAAA AAGTACGCAA chrIV:8888668-8888748 14 3.11e-04 ACGCACATCA TTTTAAAT CGCACACGTG chrI:7519013-7519093 63 3.48e-04 GAGAATTTGT ATTCAAAA GTTTCGCGCC chrV:14457215-14457295 6 3.48e-04 TGGCG ATTCAAAA CTTCGCGGCT chrI:10106262-10106342 7 3.48e-04 CAAAAT ATTCAAAA GTGTGCGGAG chrII:7121981-7122061 38 4.28e-04 TCTCATCATT TTTTGAAT TTTTTGAACT chrIV:3132389-3132469 55 4.28e-04 CGCGCGGGTG TTTTGAAT TTAATAAAAT chrIV:10197510-10197590 60 4.28e-04 AGAATATGTT TTTTGAAT TAATTGTTTC chrV:6593880-6593960 28 4.28e-04 AAGGTTTCAA TTTTGAAT CACCACGCGC chrII:4471063-4471143 53 4.28e-04 AATTTTGCAT TTTTGAAT TATTTTATTG chrIII:9617091-9617171 19 4.28e-04 TTCCGCGCGC TTTGAAAA ACTAAAATGT chrI:9287243-9287323 34 4.94e-04 TGTGTTCAAA TTTCAAAT CAATTCGAAT chrIII:4862110-4862190 49 4.94e-04 GAATACCGAC TTTCAAAT AGCATAAAGC chrII:5511883-5511963 53 5.50e-04 CTAGGCCACC ATTTAAAT TTTCAGGTCT chrIV:13400795-13400875 47 5.50e-04 TTAAATCAAG ATTTAAAT ATCAGAAAAC chrIII:4313204-4313284 66 5.50e-04 TCTCGCCGAG ATTTAAAT GTTTCAA chrII:6519874-6519954 5 5.50e-04 CTAT ATTTAAAT TCTTATTGAT chrII:13522260-13522340 9 5.77e-04 ACAATAAT TTTGGAAA AGAGGGTCCC chrIII:9818059-9818139 4 6.06e-04 ATT TTTCGAAT AAACATGTGC chrV:10732833-10732913 7 6.06e-04 ATGTTT TTTCGAAT GAGGTCAGGG chrIII:2111552-2111632 3 6.82e-04 aa atttgaat ttacgTGGCA chrI:13652755-13652835 51 6.82e-04 TCGAGAATCG ATTGAAAA TCCCACTACT chrII:7037814-7037894 25 6.82e-04 TTTAAACAAA ATTGAAAA GCACGCGGCA chrI:7676347-7676427 51 6.82e-04 atatATTAAA ATTGAAAA TGTATTAAAA chrI:6369854-6369934 69 6.82e-04 AACGCCACGC ATTGAAAA GGCG chrIII:7104199-7104279 10 6.82e-04 aaaacaaaa ATTTGAAT TTTCCCGCCG chrV:15065990-15066070 52 6.82e-04 TTTACTGTAA ATTGAAAA TAGAAATAGA chrIII:2858491-2858571 17 7.75e-04 GCTCGAAATC TTTAAAAA TTAAATGAGG chrII:14410966-14411046 72 7.75e-04 CCGGAATTCG TTTAAAAA A chrI:3198947-3199027 5 7.75e-04 TTAG TTTAAAAA TTAAAGGCGC chrI:6003114-6003194 61 9.07e-04 GGCATGCGCC TTTAGAAA ATATGGTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:13521430-13521510 5.6e-05 56_[+4]_16 chrV:13560161-13560241 5.6e-05 9_[+4]_63 chrII:10884499-10884579 5.6e-05 54_[+4]_18 chrIII:1603921-1604001 5.6e-05 64_[+4]_8 chrI:347207-347287 5.6e-05 33_[+4]_39 chrIV:13503603-13503683 5.6e-05 25_[+4]_47 chrII:6198623-6198703 5.6e-05 64_[+4]_8 chrI:11970057-11970137 5.6e-05 25_[+4]_47 chrII:6491314-6491394 5.6e-05 29_[+4]_43 chrII:7880566-7880646 5.6e-05 51_[+4]_21 chrIII:9091553-9091633 5.6e-05 54_[+4]_18 chrII:2919563-2919643 5.6e-05 18_[+4]_54 chrV:16793482-16793562 5.6e-05 71_[+4]_1 chrIII:11869673-11869753 5.6e-05 64_[+4]_8 chrIII:10320367-10320447 5.6e-05 53_[+4]_19 chrIII:3331906-3331986 9.5e-05 47_[+4]_25 chrIII:4230220-4230300 9.5e-05 47_[+4]_25 chrIV:11695776-11695856 9.5e-05 46_[+4]_26 chrI:9314897-9314977 9.5e-05 35_[+4]_37 chrIII:5663700-5663780 9.5e-05 53_[+4]_19 chrIII:9746794-9746874 9.5e-05 24_[+4]_48 chrIII:4785341-4785421 0.00013 26_[+4]_46 chrII:5377588-5377668 0.00013 16_[+4]_56 chrV:8413792-8413872 0.00013 51_[+4]_21 chrIII:4782216-4782296 0.00013 17_[+4]_55 chrII:13722928-13723008 0.00013 70_[+4]_2 chrI:364207-364287 0.00019 15_[+4]_57 chrV:4376330-4376410 0.00019 16_[+4]_56 chrI:3265356-3265436 0.00019 8_[+4]_64 chrI:3608402-3608482 0.00019 24_[+4]_48 chrI:14104401-14104481 0.00019 53_[+4]_19 chrI:6513902-6513982 0.00019 60_[+4]_12 chrIV:7958330-7958410 0.00019 12_[+4]_60 chrV:10018479-10018559 0.00019 55_[+4]_17 chrIII:5207126-5207206 0.00022 32_[+4]_40 chrI:12806842-12806922 0.00022 35_[+4]_37 chrIII:10506049-10506129 0.00022 8_[+4]_64 chrI:8681716-8681796 0.00022 57_[+4]_15 chrV:9382710-9382790 0.00022 60_[+4]_12 chrI:12961971-12962051 0.00031 66_[+4]_6 chrII:4911760-4911840 0.00031 14_[+4]_58 chrI:9512357-9512437 0.00031 44_[+4]_28 chrI:3368683-3368763 0.00031 19_[+4]_53 chrIV:8888668-8888748 0.00031 13_[+4]_59 chrI:7519013-7519093 0.00035 62_[+4]_10 chrV:14457215-14457295 0.00035 5_[+4]_67 chrI:10106262-10106342 0.00035 6_[+4]_66 chrII:7121981-7122061 0.00043 37_[+4]_35 chrIV:3132389-3132469 0.00043 54_[+4]_18 chrIV:10197510-10197590 0.00043 59_[+4]_13 chrV:6593880-6593960 0.00043 27_[+4]_45 chrII:4471063-4471143 0.00043 52_[+4]_20 chrIII:9617091-9617171 0.00043 18_[+4]_54 chrI:9287243-9287323 0.00049 33_[+4]_39 chrIII:4862110-4862190 0.00049 48_[+4]_24 chrII:5511883-5511963 0.00055 52_[+4]_20 chrIV:13400795-13400875 0.00055 46_[+4]_26 chrIII:4313204-4313284 0.00055 65_[+4]_7 chrII:6519874-6519954 0.00055 4_[+4]_68 chrII:13522260-13522340 0.00058 8_[+4]_64 chrIII:9818059-9818139 0.00061 3_[+4]_69 chrV:10732833-10732913 0.00061 6_[+4]_66 chrIII:2111552-2111632 0.00068 2_[+4]_70 chrI:13652755-13652835 0.00068 50_[+4]_22 chrII:7037814-7037894 0.00068 24_[+4]_48 chrI:7676347-7676427 0.00068 50_[+4]_22 chrI:6369854-6369934 0.00068 68_[+4]_4 chrIII:7104199-7104279 0.00068 9_[+4]_63 chrV:15065990-15066070 0.00068 51_[+4]_21 chrIII:2858491-2858571 0.00077 16_[+4]_56 chrII:14410966-14411046 0.00077 71_[+4]_1 chrI:3198947-3199027 0.00077 4_[+4]_68 chrI:6003114-6003194 0.00091 60_[+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTAAAA width=8 seqs=73 chrII:13521430-13521510 ( 57) TTTTAAAA 1 chrV:13560161-13560241 ( 10) TTTTAAAA 1 chrII:10884499-10884579 ( 55) TTTTAAAA 1 chrIII:1603921-1604001 ( 65) TTTTAAAA 1 chrI:347207-347287 ( 34) TTTTAAAA 1 chrIV:13503603-13503683 ( 26) TTTTAAAA 1 chrII:6198623-6198703 ( 65) TTTTAAAA 1 chrI:11970057-11970137 ( 26) TTTTAAAA 1 chrII:6491314-6491394 ( 30) TTTTAAAA 1 chrII:7880566-7880646 ( 52) TTTTAAAA 1 chrIII:9091553-9091633 ( 55) TTTTAAAA 1 chrII:2919563-2919643 ( 19) TTTTAAAA 1 chrV:16793482-16793562 ( 72) TTTTAAAA 1 chrIII:11869673-11869753 ( 65) TTTTAAAA 1 chrIII:10320367-10320447 ( 54) TTTTAAAA 1 chrIII:3331906-3331986 ( 48) TTTTGAAA 1 chrIII:4230220-4230300 ( 48) TTTTGAAA 1 chrIV:11695776-11695856 ( 47) TTTTGAAA 1 chrI:9314897-9314977 ( 36) TTTTGAAA 1 chrIII:5663700-5663780 ( 54) TTTTGAAA 1 chrIII:9746794-9746874 ( 25) TTTTGAAA 1 chrIII:4785341-4785421 ( 27) TTTCAAAA 1 chrII:5377588-5377668 ( 17) TTTCAAAA 1 chrV:8413792-8413872 ( 52) TTTCAAAA 1 chrIII:4782216-4782296 ( 18) TTTCAAAA 1 chrII:13722928-13723008 ( 71) TTTCAAAA 1 chrI:364207-364287 ( 16) ATTTAAAA 1 chrV:4376330-4376410 ( 17) ATTTAAAA 1 chrI:3265356-3265436 ( 9) ATTTAAAA 1 chrI:3608402-3608482 ( 25) ATTTAAAA 1 chrI:14104401-14104481 ( 54) ATTTAAAA 1 chrI:6513902-6513982 ( 61) ATTTAAAA 1 chrIV:7958330-7958410 ( 13) ATTTAAAA 1 chrV:10018479-10018559 ( 56) ATTTAAAA 1 chrIII:5207126-5207206 ( 33) TTTCGAAA 1 chrI:12806842-12806922 ( 36) TTTCGAAA 1 chrIII:10506049-10506129 ( 9) TTTCGAAA 1 chrI:8681716-8681796 ( 58) TTTCGAAA 1 chrV:9382710-9382790 ( 61) TTTCGAAA 1 chrI:12961971-12962051 ( 67) ATTTGAAA 1 chrII:4911760-4911840 ( 15) TTTTAAAT 1 chrI:9512357-9512437 ( 45) TTTTAAAT 1 chrI:3368683-3368763 ( 20) ATTTGAAA 1 chrIV:8888668-8888748 ( 14) TTTTAAAT 1 chrI:7519013-7519093 ( 63) ATTCAAAA 1 chrV:14457215-14457295 ( 6) ATTCAAAA 1 chrI:10106262-10106342 ( 7) ATTCAAAA 1 chrII:7121981-7122061 ( 38) TTTTGAAT 1 chrIV:3132389-3132469 ( 55) TTTTGAAT 1 chrIV:10197510-10197590 ( 60) TTTTGAAT 1 chrV:6593880-6593960 ( 28) TTTTGAAT 1 chrII:4471063-4471143 ( 53) TTTTGAAT 1 chrIII:9617091-9617171 ( 19) TTTGAAAA 1 chrI:9287243-9287323 ( 34) TTTCAAAT 1 chrIII:4862110-4862190 ( 49) TTTCAAAT 1 chrII:5511883-5511963 ( 53) ATTTAAAT 1 chrIV:13400795-13400875 ( 47) ATTTAAAT 1 chrIII:4313204-4313284 ( 66) ATTTAAAT 1 chrII:6519874-6519954 ( 5) ATTTAAAT 1 chrII:13522260-13522340 ( 9) TTTGGAAA 1 chrIII:9818059-9818139 ( 4) TTTCGAAT 1 chrV:10732833-10732913 ( 7) TTTCGAAT 1 chrIII:2111552-2111632 ( 3) ATTTGAAT 1 chrI:13652755-13652835 ( 51) ATTGAAAA 1 chrII:7037814-7037894 ( 25) ATTGAAAA 1 chrI:7676347-7676427 ( 51) ATTGAAAA 1 chrI:6369854-6369934 ( 69) ATTGAAAA 1 chrIII:7104199-7104279 ( 10) ATTTGAAT 1 chrV:15065990-15066070 ( 52) ATTGAAAA 1 chrIII:2858491-2858571 ( 17) TTTAAAAA 1 chrII:14410966-14411046 ( 72) TTTAAAAA 1 chrI:3198947-3199027 ( 5) TTTAAAAA 1 chrI:6003114-6003194 ( 61) TTTAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.8233 E= 1.8e-007 19 -1283 -1283 116 -1283 -1283 -1283 174 -1283 -1283 -1283 174 -240 18 -110 104 122 -1283 68 -1283 179 -1283 -1283 -1283 179 -1283 -1283 -1283 138 -1283 -1283 -28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 1.8e-007 0.328767 0.000000 0.000000 0.671233 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.054795 0.232877 0.095890 0.616438 0.671233 0.000000 0.328767 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.753425 0.000000 0.000000 0.246575 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTAAAA MEME-4 regular expression -------------------------------------------------------------------------------- [TA]TT[TC][AG]AA[AT] -------------------------------------------------------------------------------- Time 22.03 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAAHWH MEME-5 width = 8 sites = 90 llr = 600 E-value = 1.0e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAAHWH MEME-5 Description -------------------------------------------------------------------------------- Simplified A :7aaa463 pos.-specific C 13:::4:2 probability G 9::::::1 matrix T :::::243 bits 2.3 2.1 1.8 * *** 1.6 * *** Relative 1.4 * *** Entropy 1.1 ***** (9.6 bits) 0.9 ***** * 0.7 ***** * 0.5 ******* 0.2 ******* 0.0 -------- Multilevel GAAAAAAA consensus C CTT sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHWH MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5207126-5207206 13 4.23e-05 ATCGTGAAAG GAAAACAC AACAACAACA chrIV:13400795-13400875 59 4.23e-05 TTAAATATCA GAAAACAA CAAAAATTCG chrI:5818202-5818282 56 4.23e-05 GCGTCGAACC GAAAACAA AGAACTACGG chrII:4911760-4911840 43 4.23e-05 aaaaaacaac gaaaacaa aaaaaacatg chrI:8255108-8255188 9 4.23e-05 TCTTCATT GAAAACAA AATTGTATTA chrII:2919563-2919643 57 4.23e-05 GCTAGAAAAA GAAAACAA ATTTTAAAGG chrIII:10877670-10877750 1 4.23e-05 . GAAAACAA TTAACAAAAA chrII:8253336-8253416 72 4.23e-05 TTTTTTTTGT GAAAACAA C chrV:15769237-15769317 40 4.23e-05 TGAAAGTTGG GAAAACAA TTGTCACGTG chrI:14734757-14734837 47 6.79e-05 gagaaactat gaaaacat gagaatgcct chrII:15076925-15077005 17 1.27e-04 AAAAATACAG GAAAAAAA ACCGATAATT chrII:13521430-13521510 7 1.27e-04 ATAAAT GAAAAAAA ATAAATGGCT chrI:12961971-12962051 30 1.27e-04 AGAATATAAT GAAAAAAA AACAATTTGC chrIII:4230220-4230300 17 1.27e-04 GATTTTTGCA Gaaaaaaa caaagaaaat chrII:10884499-10884579 6 1.27e-04 TCGAG GAAAAAAC AAGAAAAATG chrI:10192900-10192980 6 1.27e-04 CACAG GAAAAAAA TTTTGTCCTC chrIII:4785341-4785421 35 1.27e-04 TTTTTCAAAA GAAAAAAC GTGCGAGGCT chrIV:11695776-11695856 63 1.27e-04 AATAAAAACT GAAAAAAA AGACAGAAAA chrIII:2725781-2725861 61 1.27e-04 GTCTCGTGGC GAAAAAAA TAAATTTTTG chrII:7037814-7037894 8 1.63e-04 ATTCGCG GAAAAAAT TTAAACAAAA chrII:7353152-7353232 10 1.63e-04 AATTAACAA GAAAAAAT TGCAAGCCAC chrV:15065990-15066070 22 1.63e-04 AAACTTTTCA GAAAAAAT TTCTTCGCAA chrIII:9818059-9818139 20 1.93e-04 ATAAACATGT GCAAACAC TGTCACGCAA chrV:13560161-13560241 55 1.93e-04 aaaaaagtac gcaaacac caaacgtgaa chrIV:12121225-12121305 14 1.93e-04 TAGAAATATA GCAAACAA CGATTGTCTC chrIII:7293198-7293278 34 1.93e-04 AATTGTGCGT GCAAACAA AATCACGCAG chrV:297749-297829 21 1.93e-04 cgcaaagtac gcaaacac cgatgtgtac chrIII:12495817-12495897 42 1.93e-04 ACGCAAGTCC GCAAACAC GCTGCATACA chrI:11965938-11966018 69 1.93e-04 TGCAAAGTAC GCAAACAC CCTG chrI:3368683-3368763 34 1.93e-04 GAAAAAGTAC GCAAACAC CGCCACTCCG chrIII:4999099-4999179 41 1.93e-04 TTGTTCTTTT GCAAACAA TTTCGCTTGG chrII:4993980-4994060 29 2.55e-04 CCATGGCCTA GAAAACTC CATTTATTTT chrI:8751589-8751669 39 2.55e-04 ACGGTACGCC GCAAACAT CATACTGCAC chrII:8933857-8933937 31 2.55e-04 GTCCCGCGAC GAAAACTA CCATCGCGCG chrV:20090863-20090943 23 2.55e-04 CCGCGGCCTA GAAAACTC CAATTCTTTT chrII:5819828-5819908 65 2.55e-04 GAGCGCTTCT GAAAACTC GTCCGCGA chrIV:4712599-4712679 40 2.55e-04 ACCCGGCCAC GAAAACTC GGCCATTTTG chrIV:1277197-1277277 5 3.24e-04 TTTC GCAAAAAA ACTGTTTTCA chrIII:5663700-5663780 72 3.24e-04 attaaaatct gcaaaaac t chrI:3866593-3866673 45 3.24e-04 GCGCCCCCGC GCAAAAAA TTTTGAACTT chrV:6783224-6783304 3 4.29e-04 AT GCAAAAAT AACTGGCGAA chrIII:7858722-7858802 8 4.29e-04 AACATAT GAAAAATA ATTGAATTAT chrIV:13503603-13503683 66 4.29e-04 GCTCTATTGA GAAAAATA CGGTTTT chrIII:8683846-8683926 35 4.29e-04 TTTGCGCGTG GCAAAAAT AACCGTTCGA chrII:11782663-11782743 61 4.29e-04 GCGATTGCGC GCAAAAAT CGAAACGCGC chrIV:8888668-8888748 31 4.29e-04 TCGCACACGT GAAAACAG TGCGACCGTA chrI:5113862-5113942 1 4.29e-04 . GCAAAAAT TACAAAAAAA chrIII:9504504-9504584 2 4.29e-04 C GAAAAATC GGCATATTGC chrI:1014633-1014713 69 4.29e-04 GATTTTTGCT GAAAAATC TGCG chrIV:5946927-5947007 41 5.28e-04 AACTCGAGCT GAAAAATT CTGAAAATGT chrI:5274335-5274415 59 5.28e-04 ACAGTAGCCA GAAAAATT AAAATTTACA chrIV:9336709-9336789 45 5.28e-04 GGCCACCGTC GAAAAATT TGGATATTTA chrII:14480041-14480121 44 6.21e-04 AGACACTGCA GAAAAAAG TTCTCGTGGA chrI:12806842-12806922 25 6.21e-04 ATGAAAACTG GAAAAAAG AAATTTCGAA chrIV:9739119-9739199 24 6.21e-04 TATTTACCTG GAAAATAT AGCAGAACAA chrV:11478075-11478155 48 6.21e-04 AGTAAATGGT GCAAACTC GAGTGTACTC chrIII:2111552-2111632 18 7.84e-04 aatttacgTG GCAAATAC GCTCCACTGG chrIII:6442651-6442731 25 7.84e-04 CTTTGAGCGG GCAAAATT TTTACAAATT chrI:12903698-12903778 70 7.84e-04 TGTTTTCTTC GCAAAATT GTT chrIII:2858491-2858571 59 7.84e-04 ACACCGCGAC GCAAAATT GCGTACCCGC chrV:13312444-13312524 5 7.84e-04 AATT GCAAAATT TCGCGCCAAG chrV:20088448-20088528 50 7.84e-04 ctcaaaataa gaaaactg cgtggcgtgt chrIII:10600370-10600450 73 7.84e-04 TTATCTGGCG GAAAACTG chrI:13652755-13652835 33 8.92e-04 CCACGTGGCT GCAAATAT TCGAGAATCG chrI:364207-364287 47 8.92e-04 AATAAACATT GAAAATTA AATGCTTAAA chrV:9549606-9549686 13 8.92e-04 GAATGCAGAC GCAAAAAG ACGTAAACGT chrIII:12575491-12575571 59 8.92e-04 TTAATAGTTG GAAAATTA ATTCTTAATT chrV:1870764-1870844 5 8.92e-04 GATC GAAAATTC ATCGAGGCAC chrI:3608402-3608482 43 8.92e-04 TTAATTTCCT GCAAATAT CGTAATTTTT chrII:9939048-9939128 68 8.92e-04 TGTATCAGTC GAAAATTA AAATT chrV:19770912-19770992 9 8.92e-04 ttctgccc gaaaatta ataaccagcg chrV:8413792-8413872 34 8.92e-04 GCTCTATTGC GAAAATTC AAGTTTTTTT chrIV:11142897-11142977 55 9.56e-04 TAACTTTAAC GAAAATTT ATTTAATGTA chrIV:6903807-6903887 4 9.56e-04 CTC GAAAATTT TATTTTTAGT chrI:10184483-10184563 1 9.56e-04 . GAAAATTT ATTTTCCGAT chrV:10732833-10732913 24 9.56e-04 TGAGGTCAGG GAAAAATG GGCGGGGGGT chrI:13310773-13310853 13 9.56e-04 TTACAAACTT GAAAATTT CAACTCTACC chrIII:5727959-5728039 9 9.56e-04 ACCCCACT GAAAATTT TCAAGGCGCG chrII:2992712-2992792 43 9.82e-04 CCGTGTCTTC GAAAATAG TTCCCCTGAA chrIII:4313204-4313284 2 9.82e-04 T GAAAATAG TGTGAGATAC chrIII:7104199-7104279 63 9.82e-04 CAAAATATGA GAAAATAG GAAGAATACA chrII:10926336-10926416 68 1.09e-03 CTCGGAGTAT GCAAATTT ATTAT chrI:6513902-6513982 17 1.09e-03 CTCCCGCGCG GCAAATTT CAAATCTTTT chrIV:7477871-7477951 48 1.09e-03 GCCTGCCCGC GCAAATTT TAGGCGCGAA chrIII:10506049-10506129 38 1.19e-03 CCCCTGTACC CAAAACAA AAGAAAAACA chrV:14992897-14992977 36 1.19e-03 AGATCAAGAT CAAAACAC ACTTTTTGTT chrV:4175774-4175854 21 1.19e-03 GCGCACAAAT CAAAACAA GCTCTTTCGT chrIV:7958330-7958410 36 1.22e-03 TTCATCTGAT CAAAACAT TGAACAAAGG chrV:2067572-2067652 5 1.28e-03 aaaa caaaaaaa TTACAGTAAC chrIV:7548362-7548442 69 1.28e-03 TTACAAAAGT CAAAAAAA TGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHWH MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5207126-5207206 4.2e-05 12_[+5]_60 chrIV:13400795-13400875 4.2e-05 58_[+5]_14 chrI:5818202-5818282 4.2e-05 55_[+5]_17 chrII:4911760-4911840 4.2e-05 42_[+5]_30 chrI:8255108-8255188 4.2e-05 8_[+5]_64 chrII:2919563-2919643 4.2e-05 56_[+5]_16 chrIII:10877670-10877750 4.2e-05 [+5]_72 chrII:8253336-8253416 4.2e-05 71_[+5]_1 chrV:15769237-15769317 4.2e-05 39_[+5]_33 chrI:14734757-14734837 6.8e-05 46_[+5]_26 chrII:15076925-15077005 0.00013 16_[+5]_56 chrII:13521430-13521510 0.00013 6_[+5]_66 chrI:12961971-12962051 0.00013 29_[+5]_43 chrIII:4230220-4230300 0.00013 16_[+5]_56 chrII:10884499-10884579 0.00013 5_[+5]_67 chrI:10192900-10192980 0.00013 5_[+5]_67 chrIII:4785341-4785421 0.00013 34_[+5]_38 chrIV:11695776-11695856 0.00013 62_[+5]_10 chrIII:2725781-2725861 0.00013 60_[+5]_12 chrII:7037814-7037894 0.00016 7_[+5]_65 chrII:7353152-7353232 0.00016 9_[+5]_63 chrV:15065990-15066070 0.00016 21_[+5]_51 chrIII:9818059-9818139 0.00019 19_[+5]_53 chrV:13560161-13560241 0.00019 54_[+5]_18 chrIV:12121225-12121305 0.00019 13_[+5]_59 chrIII:7293198-7293278 0.00019 33_[+5]_39 chrV:297749-297829 0.00019 20_[+5]_52 chrIII:12495817-12495897 0.00019 41_[+5]_31 chrI:11965938-11966018 0.00019 68_[+5]_4 chrI:3368683-3368763 0.00019 33_[+5]_39 chrIII:4999099-4999179 0.00019 40_[+5]_32 chrII:4993980-4994060 0.00026 28_[+5]_44 chrI:8751589-8751669 0.00026 38_[+5]_34 chrII:8933857-8933937 0.00026 30_[+5]_42 chrV:20090863-20090943 0.00026 22_[+5]_50 chrII:5819828-5819908 0.00026 64_[+5]_8 chrIV:4712599-4712679 0.00026 39_[+5]_33 chrIV:1277197-1277277 0.00032 4_[+5]_68 chrIII:5663700-5663780 0.00032 71_[+5]_1 chrI:3866593-3866673 0.00032 44_[+5]_28 chrV:6783224-6783304 0.00043 2_[+5]_70 chrIII:7858722-7858802 0.00043 7_[+5]_65 chrIV:13503603-13503683 0.00043 65_[+5]_7 chrIII:8683846-8683926 0.00043 34_[+5]_38 chrII:11782663-11782743 0.00043 60_[+5]_12 chrIV:8888668-8888748 0.00043 30_[+5]_42 chrI:5113862-5113942 0.00043 [+5]_72 chrIII:9504504-9504584 0.00043 1_[+5]_71 chrI:1014633-1014713 0.00043 68_[+5]_4 chrIV:5946927-5947007 0.00053 40_[+5]_32 chrI:5274335-5274415 0.00053 58_[+5]_14 chrIV:9336709-9336789 0.00053 44_[+5]_28 chrII:14480041-14480121 0.00062 43_[+5]_29 chrI:12806842-12806922 0.00062 24_[+5]_48 chrIV:9739119-9739199 0.00062 23_[+5]_49 chrV:11478075-11478155 0.00062 47_[+5]_25 chrIII:2111552-2111632 0.00078 17_[+5]_55 chrIII:6442651-6442731 0.00078 24_[+5]_48 chrI:12903698-12903778 0.00078 69_[+5]_3 chrIII:2858491-2858571 0.00078 58_[+5]_14 chrV:13312444-13312524 0.00078 4_[+5]_68 chrV:20088448-20088528 0.00078 49_[+5]_23 chrIII:10600370-10600450 0.00078 72_[+5] chrI:13652755-13652835 0.00089 32_[+5]_40 chrI:364207-364287 0.00089 46_[+5]_26 chrV:9549606-9549686 0.00089 12_[+5]_60 chrIII:12575491-12575571 0.00089 58_[+5]_14 chrV:1870764-1870844 0.00089 4_[+5]_68 chrI:3608402-3608482 0.00089 42_[+5]_30 chrII:9939048-9939128 0.00089 67_[+5]_5 chrV:19770912-19770992 0.00089 8_[+5]_64 chrV:8413792-8413872 0.00089 33_[+5]_39 chrIV:11142897-11142977 0.00096 54_[+5]_18 chrIV:6903807-6903887 0.00096 3_[+5]_69 chrI:10184483-10184563 0.00096 [+5]_72 chrV:10732833-10732913 0.00096 23_[+5]_49 chrI:13310773-13310853 0.00096 12_[+5]_60 chrIII:5727959-5728039 0.00096 8_[+5]_64 chrII:2992712-2992792 0.00098 42_[+5]_30 chrIII:4313204-4313284 0.00098 1_[+5]_71 chrIII:7104199-7104279 0.00098 62_[+5]_10 chrII:10926336-10926416 0.0011 67_[+5]_5 chrI:6513902-6513982 0.0011 16_[+5]_56 chrIV:7477871-7477951 0.0011 47_[+5]_25 chrIII:10506049-10506129 0.0012 37_[+5]_35 chrV:14992897-14992977 0.0012 35_[+5]_37 chrV:4175774-4175854 0.0012 20_[+5]_52 chrIV:7958330-7958410 0.0012 35_[+5]_37 chrV:2067572-2067652 0.0013 4_[+5]_68 chrIV:7548362-7548442 0.0013 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHWH MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAAHWH width=8 seqs=90 chrIII:5207126-5207206 ( 13) GAAAACAC 1 chrIV:13400795-13400875 ( 59) GAAAACAA 1 chrI:5818202-5818282 ( 56) GAAAACAA 1 chrII:4911760-4911840 ( 43) GAAAACAA 1 chrI:8255108-8255188 ( 9) GAAAACAA 1 chrII:2919563-2919643 ( 57) GAAAACAA 1 chrIII:10877670-10877750 ( 1) GAAAACAA 1 chrII:8253336-8253416 ( 72) GAAAACAA 1 chrV:15769237-15769317 ( 40) GAAAACAA 1 chrI:14734757-14734837 ( 47) GAAAACAT 1 chrII:15076925-15077005 ( 17) GAAAAAAA 1 chrII:13521430-13521510 ( 7) GAAAAAAA 1 chrI:12961971-12962051 ( 30) GAAAAAAA 1 chrIII:4230220-4230300 ( 17) GAAAAAAA 1 chrII:10884499-10884579 ( 6) GAAAAAAC 1 chrI:10192900-10192980 ( 6) GAAAAAAA 1 chrIII:4785341-4785421 ( 35) GAAAAAAC 1 chrIV:11695776-11695856 ( 63) GAAAAAAA 1 chrIII:2725781-2725861 ( 61) GAAAAAAA 1 chrII:7037814-7037894 ( 8) GAAAAAAT 1 chrII:7353152-7353232 ( 10) GAAAAAAT 1 chrV:15065990-15066070 ( 22) GAAAAAAT 1 chrIII:9818059-9818139 ( 20) GCAAACAC 1 chrV:13560161-13560241 ( 55) GCAAACAC 1 chrIV:12121225-12121305 ( 14) GCAAACAA 1 chrIII:7293198-7293278 ( 34) GCAAACAA 1 chrV:297749-297829 ( 21) GCAAACAC 1 chrIII:12495817-12495897 ( 42) GCAAACAC 1 chrI:11965938-11966018 ( 69) GCAAACAC 1 chrI:3368683-3368763 ( 34) GCAAACAC 1 chrIII:4999099-4999179 ( 41) GCAAACAA 1 chrII:4993980-4994060 ( 29) GAAAACTC 1 chrI:8751589-8751669 ( 39) GCAAACAT 1 chrII:8933857-8933937 ( 31) GAAAACTA 1 chrV:20090863-20090943 ( 23) GAAAACTC 1 chrII:5819828-5819908 ( 65) GAAAACTC 1 chrIV:4712599-4712679 ( 40) GAAAACTC 1 chrIV:1277197-1277277 ( 5) GCAAAAAA 1 chrIII:5663700-5663780 ( 72) GCAAAAAC 1 chrI:3866593-3866673 ( 45) GCAAAAAA 1 chrV:6783224-6783304 ( 3) GCAAAAAT 1 chrIII:7858722-7858802 ( 8) GAAAAATA 1 chrIV:13503603-13503683 ( 66) GAAAAATA 1 chrIII:8683846-8683926 ( 35) GCAAAAAT 1 chrII:11782663-11782743 ( 61) GCAAAAAT 1 chrIV:8888668-8888748 ( 31) GAAAACAG 1 chrI:5113862-5113942 ( 1) GCAAAAAT 1 chrIII:9504504-9504584 ( 2) GAAAAATC 1 chrI:1014633-1014713 ( 69) GAAAAATC 1 chrIV:5946927-5947007 ( 41) GAAAAATT 1 chrI:5274335-5274415 ( 59) GAAAAATT 1 chrIV:9336709-9336789 ( 45) GAAAAATT 1 chrII:14480041-14480121 ( 44) GAAAAAAG 1 chrI:12806842-12806922 ( 25) GAAAAAAG 1 chrIV:9739119-9739199 ( 24) GAAAATAT 1 chrV:11478075-11478155 ( 48) GCAAACTC 1 chrIII:2111552-2111632 ( 18) GCAAATAC 1 chrIII:6442651-6442731 ( 25) GCAAAATT 1 chrI:12903698-12903778 ( 70) GCAAAATT 1 chrIII:2858491-2858571 ( 59) GCAAAATT 1 chrV:13312444-13312524 ( 5) GCAAAATT 1 chrV:20088448-20088528 ( 50) GAAAACTG 1 chrIII:10600370-10600450 ( 73) GAAAACTG 1 chrI:13652755-13652835 ( 33) GCAAATAT 1 chrI:364207-364287 ( 47) GAAAATTA 1 chrV:9549606-9549686 ( 13) GCAAAAAG 1 chrIII:12575491-12575571 ( 59) GAAAATTA 1 chrV:1870764-1870844 ( 5) GAAAATTC 1 chrI:3608402-3608482 ( 43) GCAAATAT 1 chrII:9939048-9939128 ( 68) GAAAATTA 1 chrV:19770912-19770992 ( 9) GAAAATTA 1 chrV:8413792-8413872 ( 34) GAAAATTC 1 chrIV:11142897-11142977 ( 55) GAAAATTT 1 chrIV:6903807-6903887 ( 4) GAAAATTT 1 chrI:10184483-10184563 ( 1) GAAAATTT 1 chrV:10732833-10732913 ( 24) GAAAAATG 1 chrI:13310773-13310853 ( 13) GAAAATTT 1 chrIII:5727959-5728039 ( 9) GAAAATTT 1 chrII:2992712-2992792 ( 43) GAAAATAG 1 chrIII:4313204-4313284 ( 2) GAAAATAG 1 chrIII:7104199-7104279 ( 63) GAAAATAG 1 chrII:10926336-10926416 ( 68) GCAAATTT 1 chrI:6513902-6513982 ( 17) GCAAATTT 1 chrIV:7477871-7477951 ( 48) GCAAATTT 1 chrIII:10506049-10506129 ( 38) CAAAACAA 1 chrV:14992897-14992977 ( 36) CAAAACAC 1 chrV:4175774-4175854 ( 21) CAAAACAA 1 chrIV:7958330-7958410 ( 36) CAAAACAT 1 chrV:2067572-2067652 ( 5) CAAAAAAA 1 chrIV:7548362-7548442 ( 69) CAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHWH MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.7059 E= 1.0e-003 -1314 -163 218 -1314 123 64 -1314 -1314 179 -1314 -1314 -1314 179 -1314 -1314 -1314 179 -1314 -1314 -1314 47 83 -1314 -36 111 -1314 -1314 34 25 18 -89 6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHWH MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 1.0e-003 0.000000 0.066667 0.933333 0.000000 0.677778 0.322222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.366667 0.000000 0.233333 0.622222 0.000000 0.000000 0.377778 0.344444 0.233333 0.111111 0.311111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHWH MEME-5 regular expression -------------------------------------------------------------------------------- G[AC]AAA[ACT][AT][ATC] -------------------------------------------------------------------------------- Time 25.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1014412-1014492 2.15e-03 49_[+1(1.34e-05)]_23 chrV:10018479-10018559 2.20e-01 80 chrV:15065990-15066070 7.48e-03 80 chrII:6519874-6519954 4.31e-04 64_[+1(4.64e-05)]_8 chrII:6113324-6113404 5.28e-02 80 chrI:1014633-1014713 4.95e-03 39_[+1(4.64e-05)]_33 chrIV:9336709-9336789 4.17e-01 80 chrI:10106262-10106342 2.51e-02 80 chrI:7554756-7554836 1.79e-03 11_[+3(5.71e-05)]_36_[+2(2.60e-05)]_\ 17 chrI:13487579-13487659 1.17e-01 18_[+2(7.14e-05)]_54 chrII:9523711-9523791 9.73e-03 25_[+1(2.69e-05)]_47 chrII:6365371-6365451 2.08e-02 24_[+1(9.76e-05)]_48 chrIII:10320367-10320447 1.62e-02 53_[+4(5.58e-05)]_19 chrV:13131652-13131732 4.84e-04 7_[+2(4.87e-05)]_11_[+1(1.34e-05)]_\ 46 chrII:11860755-11860835 7.00e-01 80 chrIII:9504504-9504584 1.70e-02 28_[+1(4.64e-05)]_44 chrV:13000249-13000329 3.93e-02 25_[+2(2.60e-05)]_47 chrI:6003114-6003194 8.84e-05 13_[+1(9.76e-05)]_59 chrV:15769237-15769317 6.30e-03 39_[+5(4.23e-05)]_33 chrI:3931906-3931986 4.56e-02 80 chrII:13722928-13723008 1.58e-03 43_[+2(7.14e-05)]_10_[+2(7.14e-05)]_\ 11 chrI:5113862-5113942 7.30e-03 68_[+1(4.64e-05)]_4 chrIII:9746794-9746874 1.35e-02 24_[+4(9.55e-05)]_48 chrIV:13353397-13353477 3.80e-01 80 chrIII:7104199-7104279 5.09e-02 80 chrIV:8888668-8888748 1.05e-03 80 chrI:128339-128419 1.45e-01 80 chrV:4175774-4175854 8.70e-02 80 chrII:4604871-4604951 2.00e-02 80 chrV:5717396-5717476 8.30e-02 80 chrIV:8061429-8061509 1.94e-02 80 chrIV:11337176-11337256 8.04e-03 32_[+2(7.14e-05)]_40 chrI:3866593-3866673 5.92e-04 80 chrI:3198947-3199027 2.08e-04 39_[+3(1.64e-05)]_25_[+2(7.14e-05)] chrII:10935467-10935547 5.25e-02 80 chrI:14734757-14734837 2.02e-03 46_[+5(6.79e-05)]_17_[+2(1.30e-05)]_\ 1 chrII:11968416-11968496 1.48e-05 6_[+3(5.71e-05)]_6_[+1(2.69e-05)]_\ 35_[+2(1.30e-05)]_9 chrI:6282514-6282594 6.97e-04 12_[+1(1.34e-05)]_14_[+2(9.34e-05)]_\ 38 chrIII:4782216-4782296 6.82e-04 64_[+3(5.71e-05)]_8 chrV:8413792-8413872 9.65e-02 80 chrIV:9778170-9778250 2.46e-01 80 chrIV:5469896-5469976 2.32e-02 70_[+2(1.30e-05)]_2 chrIV:7477871-7477951 4.03e-03 56_[+2(1.30e-05)]_16 chrIII:4176366-4176446 7.75e-02 24_[+2(9.34e-05)]_48 chrII:12739471-12739551 1.14e-02 61_[+1(4.64e-05)]_11 chrIII:10600370-10600450 5.32e-03 22_[+1(4.64e-05)]_50 chrV:3578958-3579038 1.58e-04 49_[+2(1.30e-05)]_23 chrIII:9408475-9408555 6.56e-01 80 chrV:4890125-4890205 1.12e-02 45_[+2(2.60e-05)]_19_[+2(7.14e-05)] chrIV:7958330-7958410 1.34e-02 80 chrIII:4999099-4999179 1.97e-01 80 chrV:19770912-19770992 5.88e-03 80 chrI:3368683-3368763 1.77e-05 9_[+2(7.14e-05)]_42_[+1(2.69e-05)]_\ 13 chrIII:5663700-5663780 3.64e-04 7_[+1(7.87e-05)]_38_[+4(9.55e-05)]_\ 19 chrII:14410966-14411046 1.06e-05 [+3(6.83e-06)]_26_[+1(2.69e-05)]_38 chrI:5619257-5619337 8.76e-03 70_[+1(4.64e-05)]_2 chrIII:4489092-4489172 2.03e-02 80 chrII:9939048-9939128 2.80e-01 80 chrI:4765566-4765646 2.06e-02 80 chrII:7664061-7664141 3.81e-03 15_[+3(1.64e-05)]_57 chrII:7353152-7353232 8.40e-02 80 chrIII:5939243-5939323 4.07e-03 2_[+3(2.11e-05)]_27_[+2(4.87e-05)]_\ 35 chrI:9314897-9314977 1.82e-04 35_[+4(9.55e-05)]_23_[+3(6.83e-06)]_\ 6 chrI:8487418-8487498 4.42e-03 27_[+3(5.71e-05)]_26_[+2(7.14e-05)]_\ 11 chrII:11577994-11578074 1.47e-02 31_[+1(4.64e-05)]_41 chrI:6565970-6566050 4.22e-02 80 chrIV:7796852-7796932 5.59e-04 34_[+3(3.10e-05)]_25_[+2(1.30e-05)]_\ 5 chrI:5274335-5274415 2.76e-03 47_[+1(6.53e-05)]_25 chrI:7056636-7056716 7.84e-03 35_[+3(5.71e-05)]_26_[+2(9.34e-05)]_\ 3 chrIII:2725781-2725861 5.51e-04 49_[+3(3.10e-05)]_23 chrI:6369854-6369934 4.50e-05 26_[+3(6.83e-06)]_7_[+1(9.76e-05)]_\ 31 chrV:10023158-10023238 3.83e-01 80 chrIII:9617091-9617171 3.96e-02 80 chrIV:7548362-7548442 2.36e-02 43_[+2(4.87e-05)]_29 chrIII:4205903-4205983 1.36e-01 80 chrIII:5727959-5728039 1.95e-03 19_[+2(1.30e-05)]_53 chrV:2067572-2067652 1.16e-02 80 chrIV:6421317-6421397 8.19e-02 80 chrI:11965938-11966018 1.91e-01 80 chrI:13310773-13310853 2.54e-02 26_[+1(2.69e-05)]_6_[+1(4.64e-05)]_\ 32 chrIII:11869673-11869753 2.13e-01 64_[+4(5.58e-05)]_8 chrII:8253336-8253416 1.08e-02 71_[+5(4.23e-05)]_1 chrI:10436942-10437022 7.80e-01 80 chrI:6950709-6950789 6.30e-02 25_[+1(1.34e-05)]_47 chrIII:10807408-10807488 2.00e-01 80 chrI:11222201-11222281 7.54e-01 80 chrI:519977-520057 3.05e-06 22_[+2(7.14e-05)]_9_[+1(1.34e-05)]_\ 15_[+2(9.34e-05)]_10 chrII:13522260-13522340 6.00e-03 20_[+3(5.71e-05)]_52 chrV:10732833-10732913 1.28e-02 80 chrV:16793482-16793562 1.03e-03 71_[+4(5.58e-05)]_1 chrIII:10877670-10877750 8.82e-05 [+5(4.23e-05)]_22_[+1(1.34e-05)]_42 chrIV:1277197-1277277 1.16e-01 80 chrI:3152625-3152705 1.49e-01 80 chrI:7676347-7676427 3.72e-01 80 chrII:14247404-14247484 3.41e-02 31_[+1(1.34e-05)]_41 chrII:2919563-2919643 1.25e-03 18_[+4(5.58e-05)]_30_[+5(4.23e-05)]_\ 16 chrV:11554472-11554552 1.07e-01 80 chrIII:4434577-4434657 1.34e-01 80 chrII:11782663-11782743 5.14e-04 72_[+2(2.60e-05)] chrIII:8689281-8689361 6.57e-02 80 chrI:9512357-9512437 7.44e-03 59_[+1(9.76e-05)]_13 chrII:10393839-10393919 1.05e-01 33_[+2(4.87e-05)]_39 chrV:14457215-14457295 3.24e-03 80 chrIII:9091553-9091633 1.05e-02 54_[+4(5.58e-05)]_18 chrIII:12495817-12495897 2.08e-03 25_[+1(7.87e-05)]_35_[+1(2.69e-05)]_\ 4 chrII:7880566-7880646 2.55e-03 51_[+4(5.58e-05)]_21 chrV:297749-297829 4.37e-03 80 chrIII:4313204-4313284 7.10e-05 53_[+3(6.83e-06)]_19 chrII:6683051-6683131 6.29e-02 12_[+1(6.53e-05)]_60 chrIV:4712599-4712679 1.95e-01 80 chrI:5827834-5827914 1.36e-01 80 chrIV:15528985-15529065 2.24e-01 35_[+2(7.14e-05)]_37 chrII:14245031-14245111 5.91e-02 80 chrV:20088448-20088528 8.46e-02 80 chrV:14992897-14992977 1.29e-01 80 chrII:6491314-6491394 6.58e-03 29_[+4(5.58e-05)]_31_[+3(5.71e-05)]_\ 4 chrIII:8683846-8683926 2.80e-02 80 chrV:13312444-13312524 3.36e-02 80 chrI:6513902-6513982 5.06e-03 34_[+2(9.34e-05)]_38 chrV:11478075-11478155 5.67e-02 80 chrI:14104401-14104481 1.27e-01 80 chrII:4471063-4471143 2.22e-01 80 chrIII:7102039-7102119 1.24e-01 80 chrV:6593880-6593960 3.44e-02 80 chrIV:9741308-9741388 1.15e-01 80 chrIV:9739119-9739199 2.70e-02 4_[+1(4.64e-05)]_68 chrII:2992712-2992792 9.34e-02 80 chrI:11970057-11970137 1.03e-03 11_[+1(2.69e-05)]_6_[+4(5.58e-05)]_\ 15_[+1(1.34e-05)]_24 chrV:9382710-9382790 4.56e-03 15_[+2(4.87e-05)]_25_[+2(1.30e-05)]_\ 24 chrIV:12194810-12194890 2.15e-04 63_[+3(6.83e-06)]_9 chrIV:11695776-11695856 1.98e-02 46_[+4(9.55e-05)]_26 chrI:8255108-8255188 3.73e-02 8_[+5(4.23e-05)]_64 chrI:7519013-7519093 1.54e-01 80 chrI:3608402-3608482 2.29e-03 2_[+2(9.34e-05)]_70 chrIV:13512333-13512413 5.76e-04 41_[+1(4.64e-05)]_31 chrII:5819828-5819908 4.68e-02 80 chrI:9226647-9226727 3.21e-01 80 chrI:8789390-8789470 9.78e-01 80 chrII:10197250-10197330 2.29e-01 80 chrI:8681716-8681796 9.16e-04 71_[+1(4.64e-05)]_1 chrIII:10320569-10320649 3.26e-03 58_[+3(3.10e-05)]_6_[+1(6.53e-05)] chrII:5377588-5377668 3.77e-04 7_[+1(1.34e-05)]_65 chrII:6198623-6198703 6.39e-05 22_[+3(3.10e-05)]_34_[+4(5.58e-05)]_\ 8 chrIII:8101140-8101220 1.06e-01 80 chrIII:10506049-10506129 1.10e-01 80 chrI:3265356-3265436 1.22e-01 80 chrIII:2858491-2858571 6.09e-04 36_[+1(4.64e-05)]_36 chrIV:6887836-6887916 6.91e-01 80 chrIII:3719752-3719832 8.42e-01 80 chrIII:4792741-4792821 1.22e-02 44_[+2(9.34e-05)]_28 chrIII:11118262-11118342 3.55e-01 80 chrV:4376330-4376410 1.24e-03 80 chrIV:4447515-4447595 1.26e-02 62_[+2(2.60e-05)]_10 chrV:1870764-1870844 3.67e-01 80 chrV:6214651-6214731 1.34e-01 80 chrII:10783734-10783814 6.70e-04 6_[+3(5.71e-05)]_19_[+1(1.34e-05)]_\ 39 chrIV:13503603-13503683 1.54e-03 25_[+4(5.58e-05)]_47 chrIII:7293198-7293278 1.51e-01 80 chrII:7037814-7037894 1.52e-02 80 chrIII:9793986-9794066 7.97e-01 80 chrIII:11290038-11290118 2.18e-04 29_[+2(1.30e-05)]_30_[+1(1.34e-05)]_\ 5 chrI:6467674-6467754 3.51e-01 80 chrI:12903698-12903778 8.91e-02 80 chrIII:4412773-4412853 5.73e-01 80 chrI:4382110-4382190 1.75e-01 80 chrI:10184483-10184563 2.00e-01 80 chrIV:6903807-6903887 4.37e-01 80 chrII:4229262-4229342 5.81e-01 80 chrII:10926336-10926416 1.49e-02 15_[+2(9.34e-05)]_57 chrIV:11142897-11142977 4.47e-01 80 chrIV:10197510-10197590 2.09e-01 80 chrI:12806842-12806922 7.30e-02 80 chrIII:4785341-4785421 5.00e-03 80 chrII:4911760-4911840 3.54e-02 42_[+5(4.23e-05)]_30 chrIII:12575491-12575571 5.59e-01 80 chrI:2316049-2316129 5.22e-04 60_[+3(6.83e-06)]_12 chrI:3269150-3269230 1.15e-01 80 chrIV:12121225-12121305 6.68e-02 80 chrI:347207-347287 1.16e-01 33_[+4(5.58e-05)]_39 chrIII:11093621-11093701 2.85e-01 80 chrI:2144160-2144240 9.31e-01 80 chrI:8839261-8839341 2.13e-03 17_[+2(4.87e-05)]_35_[+3(1.64e-05)]_\ 12 chrIII:1603921-1604001 1.22e-01 64_[+4(5.58e-05)]_8 chrIV:3132389-3132469 1.38e-02 80 chrI:5818202-5818282 1.71e-05 41_[+2(7.14e-05)]_6_[+5(4.23e-05)]_\ 5_[+1(1.34e-05)]_4 chrIV:14764839-14764919 7.81e-01 80 chrIII:4862110-4862190 5.72e-01 80 chrIII:7858722-7858802 7.03e-02 80 chrII:7121981-7122061 3.78e-01 80 chrV:20090863-20090943 6.86e-02 80 chrIII:881534-881614 8.56e-01 80 chrI:10192900-10192980 1.26e-01 80 chrIII:9615316-9615396 5.94e-01 80 chrII:10884499-10884579 2.42e-02 54_[+4(5.58e-05)]_18 chrV:6783224-6783304 2.59e-01 80 chrIII:4984856-4984936 7.94e-01 80 chrII:12919328-12919408 2.41e-03 23_[+3(6.83e-06)]_49 chrI:13576136-13576216 7.88e-01 80 chrIV:379732-379812 1.43e-01 80 chrV:13560161-13560241 6.38e-04 9_[+4(5.58e-05)]_21_[+1(9.76e-05)]_\ 34 chrV:13660350-13660430 2.70e-02 80 chrIV:11054039-11054119 9.00e-02 80 chrIV:13400795-13400875 3.74e-02 58_[+5(4.23e-05)]_14 chrV:9549606-9549686 3.25e-01 80 chrIII:7165428-7165508 2.49e-01 80 chrII:14218374-14218454 3.28e-01 80 chrI:11580314-11580394 3.21e-03 22_[+2(1.30e-05)]_50 chrIII:6970027-6970107 7.37e-01 80 chrIII:4230220-4230300 8.16e-03 47_[+4(9.55e-05)]_25 chrII:8933857-8933937 4.77e-05 19_[+3(2.11e-05)]_14_[+2(2.60e-05)]_\ 31 chrIII:9818059-9818139 3.58e-04 50_[+1(4.64e-05)]_3_[+1(1.34e-05)]_\ 11 chrI:12961971-12962051 6.41e-02 80 chrIII:6442651-6442731 1.85e-02 80 chrI:3784625-3784705 3.54e-03 50_[+1(6.53e-05)]_22 chrIV:5946927-5947007 2.11e-01 80 chrII:5421115-5421195 6.08e-05 5_[+1(4.64e-05)]_41_[+2(2.60e-05)]_\ 18 chrIV:12278651-12278731 6.90e-01 80 chrIII:3331906-3331986 2.40e-01 47_[+4(9.55e-05)]_25 chrIII:5448351-5448431 1.73e-02 25_[+2(1.30e-05)]_47 chrI:364207-364287 4.37e-03 69_[+2(4.87e-05)]_3 chrII:13521430-13521510 1.14e-02 56_[+4(5.58e-05)]_16 chrIII:12875871-12875951 6.46e-01 80 chrV:2008562-2008642 1.10e-02 59_[+1(4.64e-05)]_13 chrI:10422378-10422458 6.10e-01 80 chrIII:9748902-9748982 9.30e-01 80 chrI:12507875-12507955 1.27e-03 6_[+1(1.34e-05)]_66 chrIII:13423586-13423666 9.27e-02 80 chrIV:2655170-2655250 2.67e-01 80 chrV:9536668-9536748 2.47e-01 80 chrI:5579290-5579370 1.42e-01 80 chrV:20476645-20476725 9.02e-03 36_[+3(6.83e-06)]_36 chrI:9287243-9287323 1.75e-03 9_[+1(4.64e-05)]_63 chrV:4447774-4447854 5.70e-01 80 chrII:15076925-15077005 5.28e-02 80 chrII:8276170-8276250 1.95e-01 80 chrI:3697838-3697918 7.71e-02 80 chrI:13652755-13652835 2.25e-01 80 chrI:8751589-8751669 2.50e-03 27_[+1(7.87e-05)]_45 chrII:4993980-4994060 2.98e-01 80 chrIII:2102072-2102152 6.50e-02 8_[+3(1.64e-05)]_64 chrIII:5207126-5207206 2.65e-03 12_[+5(4.23e-05)]_60 chrIII:9776122-9776202 3.07e-01 80 chrI:7695295-7695375 4.35e-01 80 chrI:5620587-5620667 8.23e-01 80 chrM:184-264 8.58e-01 80 chrIII:2111552-2111632 1.19e-01 80 chrII:14480041-14480121 9.33e-02 80 chrII:5511883-5511963 2.70e-01 80 chrIV:17088949-17089029 6.59e-01 80 chrII:4320446-4320526 2.63e-03 27_[+1(1.34e-05)]_45 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************