******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-120.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8461308-8461388 1.0000 80 chrII:6936709-6936789 1.0000 80 chrI:6893322-6893402 1.0000 80 chrV:9112090-9112170 1.0000 80 chrII:8117598-8117678 1.0000 80 chrI:7029955-7030035 1.0000 80 chrII:2728614-2728694 1.0000 80 chrI:6770063-6770143 1.0000 80 chrIV:2613268-2613348 1.0000 80 chrIV:379051-379131 1.0000 80 chrX:2950407-2950487 1.0000 80 chrIV:4639536-4639616 1.0000 80 chrX:10410770-10410850 1.0000 80 chrIII:7545354-7545434 1.0000 80 chrI:5015809-5015889 1.0000 80 chrIII:9987006-9987086 1.0000 80 chrX:9735642-9735722 1.0000 80 chrIV:17215198-17215278 1.0000 80 chrX:8052202-8052282 1.0000 80 chrV:8667392-8667472 1.0000 80 chrI:6616082-6616162 1.0000 80 chrV:6202713-6202793 1.0000 80 chrI:8459070-8459150 1.0000 80 chrI:5072361-5072441 1.0000 80 chrIV:7426276-7426356 1.0000 80 chrII:6170375-6170455 1.0000 80 chrII:4805986-4806066 1.0000 80 chrII:11595703-11595783 1.0000 80 chrX:3456788-3456868 1.0000 80 chrX:9832537-9832617 1.0000 80 chrIII:5648472-5648552 1.0000 80 chrIII:3200711-3200791 1.0000 80 chrI:4516214-4516294 1.0000 80 chrIV:11572682-11572762 1.0000 80 chrX:8054596-8054676 1.0000 80 chrI:611817-611897 1.0000 80 chrV:11307888-11307968 1.0000 80 chrIII:5931550-5931630 1.0000 80 chrII:7722909-7722989 1.0000 80 chrI:5777393-5777473 1.0000 80 chrIII:8022258-8022338 1.0000 80 chrX:6299836-6299916 1.0000 80 chrII:4516445-4516525 1.0000 80 chrI:1304068-1304148 1.0000 80 chrX:11463685-11463765 1.0000 80 chrII:4520139-4520219 1.0000 80 chrX:16536428-16536508 1.0000 80 chrIV:10048351-10048431 1.0000 80 chrX:6509911-6509991 1.0000 80 chrV:17539426-17539506 1.0000 80 chrX:7661328-7661408 1.0000 80 chrIV:9735056-9735136 1.0000 80 chrIII:5898725-5898805 1.0000 80 chrIV:9080286-9080366 1.0000 80 chrX:8057949-8058029 1.0000 80 chrIII:5486457-5486537 1.0000 80 chrI:6236065-6236145 1.0000 80 chrI:11559358-11559438 1.0000 80 chrIV:4506762-4506842 1.0000 80 chrIV:6135761-6135841 1.0000 80 chrX:16812085-16812165 1.0000 80 chrIII:3927581-3927661 1.0000 80 chrV:4157483-4157563 1.0000 80 chrI:7385328-7385408 1.0000 80 chrX:16534621-16534701 1.0000 80 chrI:8457227-8457307 1.0000 80 chrIV:13561638-13561718 1.0000 80 chrX:14054945-14055025 1.0000 80 chrI:12008244-12008324 1.0000 80 chrX:6597237-6597317 1.0000 80 chrIV:4643722-4643802 1.0000 80 chrX:8789200-8789280 1.0000 80 chrX:16525768-16525848 1.0000 80 chrI:3891613-3891693 1.0000 80 chrII:2726926-2727006 1.0000 80 chrIII:6742724-6742804 1.0000 80 chrIII:1943655-1943735 1.0000 80 chrX:4965788-4965868 1.0000 80 chrV:6930532-6930612 1.0000 80 chrI:9199341-9199421 1.0000 80 chrI:14245273-14245353 1.0000 80 chrX:13638496-13638576 1.0000 80 chrX:13873498-13873578 1.0000 80 chrIII:5931752-5931832 1.0000 80 chrI:8459272-8459352 1.0000 80 chrII:5841297-5841377 1.0000 80 chrI:3405840-3405920 1.0000 80 chrV:10010989-10011069 1.0000 80 chrI:1069297-1069377 1.0000 80 chrV:6751831-6751911 1.0000 80 chrX:3854029-3854109 1.0000 80 chrX:11560227-11560307 1.0000 80 chrV:265753-265833 1.0000 80 chrX:11821288-11821368 1.0000 80 chrII:10025236-10025316 1.0000 80 chrII:1848265-1848345 1.0000 80 chrII:13056751-13056831 1.0000 80 chrV:12234730-12234810 1.0000 80 chrII:8783609-8783689 1.0000 80 chrI:4046793-4046873 1.0000 80 chrV:12897026-12897106 1.0000 80 chrX:3689534-3689614 1.0000 80 chrII:580301-580381 1.0000 80 chrX:16389415-16389495 1.0000 80 chrX:3900851-3900931 1.0000 80 chrII:10558488-10558568 1.0000 80 chrI:9188065-9188145 1.0000 80 chrII:6181531-6181611 1.0000 80 chrX:15014097-15014177 1.0000 80 chrV:14153805-14153885 1.0000 80 chrI:6769126-6769206 1.0000 80 chrI:10590656-10590736 1.0000 80 chrII:4518455-4518535 1.0000 80 chrIII:13616966-13617046 1.0000 80 chrII:8105195-8105275 1.0000 80 chrIII:9744656-9744736 1.0000 80 chrV:11074622-11074702 1.0000 80 chrX:15943185-15943265 1.0000 80 chrV:6767693-6767773 1.0000 80 chrX:493099-493179 1.0000 80 chrX:14292780-14292860 1.0000 80 chrIII:5565892-5565972 1.0000 80 chrX:14684543-14684623 1.0000 80 chrV:11958574-11958654 1.0000 80 chrV:12517979-12518059 1.0000 80 chrX:17459057-17459137 1.0000 80 chrX:4279354-4279434 1.0000 80 chrIV:1107351-1107431 1.0000 80 chrX:14287950-14288030 1.0000 80 chrI:10491062-10491142 1.0000 80 chrIII:3914978-3915058 1.0000 80 chrV:2803414-2803494 1.0000 80 chrIII:8815895-8815975 1.0000 80 chrIII:2754079-2754159 1.0000 80 chrX:16655390-16655470 1.0000 80 chrI:8902564-8902644 1.0000 80 chrIV:6014005-6014085 1.0000 80 chrIV:8813744-8813824 1.0000 80 chrX:7715670-7715750 1.0000 80 chrII:4579833-4579913 1.0000 80 chrI:12844244-12844324 1.0000 80 chrI:849310-849390 1.0000 80 chrI:4936323-4936403 1.0000 80 chrX:6028782-6028862 1.0000 80 chrIII:8684612-8684692 1.0000 80 chrII:8844946-8845026 1.0000 80 chrV:12477324-12477404 1.0000 80 chrIV:10422379-10422459 1.0000 80 chrIV:314640-314720 1.0000 80 chrI:14358516-14358596 1.0000 80 chrI:4035599-4035679 1.0000 80 chrX:9300519-9300599 1.0000 80 chrIII:5563881-5563961 1.0000 80 chrI:1100740-1100820 1.0000 80 chrX:13637658-13637738 1.0000 80 chrIII:6744618-6744698 1.0000 80 chrV:8196179-8196259 1.0000 80 chrIV:7095633-7095713 1.0000 80 chrIII:5428917-5428997 1.0000 80 chrX:15575584-15575664 1.0000 80 chrV:6893868-6893948 1.0000 80 chrV:9295805-9295885 1.0000 80 chrX:9564111-9564191 1.0000 80 chrI:10262248-10262328 1.0000 80 chrII:4038819-4038899 1.0000 80 chrII:7909358-7909438 1.0000 80 chrIV:12615494-12615574 1.0000 80 chrX:11574401-11574481 1.0000 80 chrII:8499222-8499302 1.0000 80 chrI:7028277-7028357 1.0000 80 chrI:3988728-3988808 1.0000 80 chrV:11677676-11677756 1.0000 80 chrX:1082135-1082215 1.0000 80 chrX:14728029-14728109 1.0000 80 chrI:14863574-14863654 1.0000 80 chrI:4020700-4020780 1.0000 80 chrIV:5136580-5136660 1.0000 80 chrIV:5820214-5820294 1.0000 80 chrV:12697543-12697623 1.0000 80 chrIV:5507916-5507996 1.0000 80 chrI:9739509-9739589 1.0000 80 chrX:11035727-11035807 1.0000 80 chrI:10105487-10105567 1.0000 80 chrI:5690190-5690270 1.0000 80 chrV:14909480-14909560 1.0000 80 chrIV:7098703-7098783 1.0000 80 chrIV:11571748-11571828 1.0000 80 chrI:7948192-7948272 1.0000 80 chrIV:8850922-8851002 1.0000 80 chrV:8332345-8332425 1.0000 80 chrI:11554608-11554688 1.0000 80 chrV:12233618-12233698 1.0000 80 chrV:284933-285013 1.0000 80 chrIV:4027239-4027319 1.0000 80 chrV:6768738-6768818 1.0000 80 chrX:3861429-3861509 1.0000 80 chrIII:9859340-9859420 1.0000 80 chrV:14871490-14871570 1.0000 80 chrII:8769530-8769610 1.0000 80 chrIV:607795-607875 1.0000 80 chrI:10840031-10840111 1.0000 80 chrII:6545170-6545250 1.0000 80 chrX:14653668-14653748 1.0000 80 chrX:1096934-1097014 1.0000 80 chrX:16392325-16392405 1.0000 80 chrX:10176506-10176586 1.0000 80 chrX:1054110-1054190 1.0000 80 chrX:7573749-7573829 1.0000 80 chrIV:7429053-7429133 1.0000 80 chrIII:3782905-3782985 1.0000 80 chrIV:282131-282211 1.0000 80 chrV:18581885-18581965 1.0000 80 chrII:9764712-9764792 1.0000 80 chrI:433703-433783 1.0000 80 chrX:5195610-5195690 1.0000 80 chrI:5020200-5020280 1.0000 80 chrX:1080676-1080756 1.0000 80 chrI:14533010-14533090 1.0000 80 chrI:2861150-2861230 1.0000 80 chrIII:3583454-3583534 1.0000 80 chrII:7755302-7755382 1.0000 80 chrII:1208762-1208842 1.0000 80 chrX:17667397-17667477 1.0000 80 chrV:11034901-11034981 1.0000 80 chrV:20451953-20452033 1.0000 80 chrX:8053093-8053173 1.0000 80 chrX:6224985-6225065 1.0000 80 chrIV:3168967-3169047 1.0000 80 chrI:9955975-9956055 1.0000 80 chrIV:12012534-12012614 1.0000 80 chrV:11073501-11073581 1.0000 80 chrV:9247624-9247704 1.0000 80 chrIII:952382-952462 1.0000 80 chrV:7822774-7822854 1.0000 80 chrIII:3396283-3396363 1.0000 80 chrIV:12637523-12637603 1.0000 80 chrIV:11710516-11710596 1.0000 80 chrV:14625802-14625882 1.0000 80 chrII:1529-1609 1.0000 80 chrV:11308091-11308171 1.0000 80 chrX:14054215-14054295 1.0000 80 chrIV:5986912-5986992 1.0000 80 chrX:5592656-5592736 1.0000 80 chrII:161424-161504 1.0000 80 chrII:6482209-6482289 1.0000 80 chrX:3959351-3959431 1.0000 80 chrI:7130921-7131001 1.0000 80 chrIII:5572977-5573057 1.0000 80 chrIII:2426216-2426296 1.0000 80 chrI:14865022-14865102 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_unc-120/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/unc-120.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.23 G 0.241 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.23 G 0.241 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YTCTCTYY MEME-1 width = 8 sites = 64 llr = 509 E-value = 6.1e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCTCTYY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 4:a:8:54 probability G ::::::1: matrix T 5a:a2a46 bits 2.1 * 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.3 ***** Entropy 1.1 ***** * (11.5 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTCTCT consensus C T TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTYY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6224985-6225065 40 2.77e-05 TCGAGAGCGC CTCTCTCT CTCTGCTCAA chrX:8053093-8053173 70 2.77e-05 TCCCTCCCGC TTCTCTCT TCC chrI:14533010-14533090 52 2.77e-05 CTGCCACCTT CTCTCTCT CCTCCCGTGT chrI:7948192-7948272 67 2.77e-05 CTTCCACACC CTCTCTCT ACTTTA chrI:10105487-10105567 11 2.77e-05 GAATCTTTCT CTCTCTCT TTTCATCAGA chrI:9739509-9739589 16 2.77e-05 ATCACTCTAT CTCTCTCT TCATTTTCTC chrI:4020700-4020780 73 2.77e-05 AAACGAGACT CTCTCTCT chrX:6028782-6028862 47 2.77e-05 TCGCCACCAA TTCTCTCT TTCACTTCTG chrIV:8813744-8813824 2 2.77e-05 t ttctctct TGTGATAAGA chrIII:13616966-13617046 70 2.77e-05 CTTTTCATCT TTCTCTCT GCA chrI:9188065-9188145 33 2.77e-05 TGTTTCTTCT CTCTCTCT CAACTTCCCT chrIV:4643722-4643802 18 2.77e-05 CATCATCTCC CTCTCTCT ATCTTTCTCC chrX:7661328-7661408 32 2.77e-05 TTGCCCCGCT CTCTCTCT TTGCCCATTT chrI:5072361-5072441 42 2.77e-05 AAGTCGACCT CTCTCTCT CTCTAGTCTA chrV:9112090-9112170 9 2.77e-05 TGTTGTTG TTCTCTCT ATCTCTCCTT chrX:14054215-14054295 16 5.22e-05 CATCAGATCC TTCTCTCC CTCTTCAGAT chrV:11034901-11034981 10 5.22e-05 GATCTCTAT CTCTCTCC AGATCCTCCT chrV:6768738-6768818 50 5.22e-05 AAGAAGTGAG CTCTCTCC CGTGGATGAA chrII:4038819-4038899 33 5.22e-05 CCTTTTTCTG CTCTCTCC TGATGTGCTC chrX:493099-493179 23 5.22e-05 TCTTCGTCTT TTCTCTCC AGCTCGATGC chrI:14245273-14245353 32 5.22e-05 ACGACATGTG CTCTCTCC ATCATCGCTG chrIV:4506762-4506842 12 5.22e-05 CCCCTGAGGG CTCTCTCC ATACTATCAA chrX:16536428-16536508 15 5.22e-05 GGTGCCCCGC CTCTCTCC TTGCCTCCTC chrII:6170375-6170455 5 5.22e-05 TAGT TTCTCTCC TGATCCACTC chrV:14909480-14909560 16 8.36e-05 CTACCTCCAT CTCTCTTT TTCTTTCTTT chrV:6893868-6893948 12 8.36e-05 TCTTCCTCTT TTCTCTTT TCCTCTTTCT chrX:6299836-6299916 19 8.36e-05 TGTCTCATGT CTCTCTTT ATCTTCTTGA chrI:7029955-7030035 58 8.36e-05 GTGCTTCTAT CTCTCTTT TTTGATTGAC chrIII:3583454-3583534 41 1.11e-04 cttctattat ctctcttc tcttctattc chrX:15575584-15575664 36 1.11e-04 GCAGTGCCAT TTCTCTTC GGCAGCAAGA chrII:6181531-6181611 56 1.11e-04 CTGTAAAGTC TTCTCTTC CTCGTTTTCA chrII:7722909-7722989 5 1.11e-04 ATTG TTCTCTTC ATCATCTTCA chrIV:379051-379131 13 1.11e-04 TTTTCCTGAT TTCTCTTC TTCTTTTCTG chrI:7130921-7131001 19 1.56e-04 CATGTGCCTT TTCTCTGT GCTTCTACAC chrII:161424-161504 68 1.56e-04 AGCTGTGATG CTCTCTGT GCTAT chrV:7822774-7822854 31 1.56e-04 AATAATTGCG ATCTCTCT TGTTGCTCCT chrX:11035727-11035807 50 1.56e-04 GCCGTGGCTC TTCTCTGT CCCTGTGTGT chrIII:6744618-6744698 63 1.56e-04 TGTGTTATGT TTCTCTGT TTCTTATCTA chrI:6769126-6769206 26 1.56e-04 AAGCTTCTTC TTCTCTGT TACACATTCT chrX:13873498-13873578 56 1.56e-04 TTTCATCTAC TTCTCTGT TTCTTGCTTA chrIV:6135761-6135841 69 1.56e-04 GAAATGATCC TTCTCTGT CTTC chrI:5015809-5015889 65 1.56e-04 ATAGAGAAGG ATCTCTCT CAATTTTC chrIII:6742724-6742804 59 2.26e-04 CATCCACTCG TTCTCTGC GTCTCTTACT chrI:6236065-6236145 53 2.26e-04 TGGCTTGAGC TTCTTTCT GTGTCTGAGA chrI:5777393-5777473 16 2.26e-04 TCGAATCAAA CTCTTTCT GCCCACAACA chrIII:3200711-3200791 7 2.26e-04 CATCAT TTCTCTGC GGTCTCTCAA chrX:3456788-3456868 46 2.26e-04 TATTACATCC ATCTCTCC ACACCAACCA chrX:14054945-14055025 8 2.54e-04 TTTTTGC TTCTTTCC TCTTTTCCCC chrIV:11710516-11710596 68 2.71e-04 AGTGTCTGAT ATCTCTTT TCATT chrV:11958574-11958654 26 2.71e-04 AACTGACATT ATCTCTTT TCGCATTACA chrII:1529-1609 56 3.22e-04 CAGGGCCTGC ATCTCTTC TATGTCTCTC chrV:10010989-10011069 7 3.22e-04 TCGGAG ATCTCTTC AAATCCAATG chrX:6597237-6597317 39 3.22e-04 GTTTTCAATG TTCTTTTT ATGTGGGTCC chrI:7385328-7385408 55 3.22e-04 TCTATCACAT TTCTTTTT GTGCCTTCGT chrI:1304068-1304148 68 3.22e-04 TGCAAAATGC TTCTTTTT CTTCT chrX:9832537-9832617 17 3.22e-04 ACATACGTTC TTCTTTTT CTACCCCTAT chrIV:7426276-7426356 44 3.22e-04 TCCCCCACTC TTCTTTTT GTGATTTGTC chrII:6936709-6936789 69 3.22e-04 CTCCGTGTCT ATCTCTTC TGAA chrV:2803414-2803494 55 3.53e-04 CTTTTTGCCC CTCTTTTC TTTTTTTGTC chrX:14292780-14292860 45 3.53e-04 ttatgctttc ttcttttc cttcttGCCC chrV:14153805-14153885 44 3.53e-04 AGGATTTCCC CTCTTTTC AATATTACTT chrV:12897026-12897106 50 3.53e-04 GAGCCGCCTG CTCTTTTC CCTATCTTGA chrIV:13561638-13561718 15 3.53e-04 CTTCTTCTTC TTCTTTTC GTTGTAAAAA chrIII:5648472-5648552 37 3.53e-04 AACAATGTCC CTCTTTTC TTCTCACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTYY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6224985-6225065 2.8e-05 39_[+1]_33 chrX:8053093-8053173 2.8e-05 69_[+1]_3 chrI:14533010-14533090 2.8e-05 51_[+1]_21 chrI:7948192-7948272 2.8e-05 66_[+1]_6 chrI:10105487-10105567 2.8e-05 10_[+1]_62 chrI:9739509-9739589 2.8e-05 15_[+1]_57 chrI:4020700-4020780 2.8e-05 72_[+1] chrX:6028782-6028862 2.8e-05 46_[+1]_26 chrIV:8813744-8813824 2.8e-05 1_[+1]_71 chrIII:13616966-13617046 2.8e-05 69_[+1]_3 chrI:9188065-9188145 2.8e-05 32_[+1]_40 chrIV:4643722-4643802 2.8e-05 17_[+1]_55 chrX:7661328-7661408 2.8e-05 31_[+1]_41 chrI:5072361-5072441 2.8e-05 41_[+1]_31 chrV:9112090-9112170 2.8e-05 8_[+1]_64 chrX:14054215-14054295 5.2e-05 15_[+1]_57 chrV:11034901-11034981 5.2e-05 9_[+1]_63 chrV:6768738-6768818 5.2e-05 49_[+1]_23 chrII:4038819-4038899 5.2e-05 32_[+1]_40 chrX:493099-493179 5.2e-05 22_[+1]_50 chrI:14245273-14245353 5.2e-05 31_[+1]_41 chrIV:4506762-4506842 5.2e-05 11_[+1]_61 chrX:16536428-16536508 5.2e-05 14_[+1]_58 chrII:6170375-6170455 5.2e-05 4_[+1]_68 chrV:14909480-14909560 8.4e-05 15_[+1]_57 chrV:6893868-6893948 8.4e-05 11_[+1]_61 chrX:6299836-6299916 8.4e-05 18_[+1]_54 chrI:7029955-7030035 8.4e-05 57_[+1]_15 chrIII:3583454-3583534 0.00011 40_[+1]_32 chrX:15575584-15575664 0.00011 35_[+1]_37 chrII:6181531-6181611 0.00011 55_[+1]_17 chrII:7722909-7722989 0.00011 4_[+1]_68 chrIV:379051-379131 0.00011 12_[+1]_60 chrI:7130921-7131001 0.00016 18_[+1]_54 chrII:161424-161504 0.00016 67_[+1]_5 chrV:7822774-7822854 0.00016 30_[+1]_42 chrX:11035727-11035807 0.00016 49_[+1]_23 chrIII:6744618-6744698 0.00016 62_[+1]_10 chrI:6769126-6769206 0.00016 25_[+1]_47 chrX:13873498-13873578 0.00016 55_[+1]_17 chrIV:6135761-6135841 0.00016 68_[+1]_4 chrI:5015809-5015889 0.00016 64_[+1]_8 chrIII:6742724-6742804 0.00023 58_[+1]_14 chrI:6236065-6236145 0.00023 52_[+1]_20 chrI:5777393-5777473 0.00023 15_[+1]_57 chrIII:3200711-3200791 0.00023 6_[+1]_66 chrX:3456788-3456868 0.00023 45_[+1]_27 chrX:14054945-14055025 0.00025 7_[+1]_65 chrIV:11710516-11710596 0.00027 67_[+1]_5 chrV:11958574-11958654 0.00027 25_[+1]_47 chrII:1529-1609 0.00032 55_[+1]_17 chrV:10010989-10011069 0.00032 6_[+1]_66 chrX:6597237-6597317 0.00032 38_[+1]_34 chrI:7385328-7385408 0.00032 54_[+1]_18 chrI:1304068-1304148 0.00032 67_[+1]_5 chrX:9832537-9832617 0.00032 16_[+1]_56 chrIV:7426276-7426356 0.00032 43_[+1]_29 chrII:6936709-6936789 0.00032 68_[+1]_4 chrV:2803414-2803494 0.00035 54_[+1]_18 chrX:14292780-14292860 0.00035 44_[+1]_28 chrV:14153805-14153885 0.00035 43_[+1]_29 chrV:12897026-12897106 0.00035 49_[+1]_23 chrIV:13561638-13561718 0.00035 14_[+1]_58 chrIII:5648472-5648552 0.00035 36_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTYY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCTCTYY width=8 seqs=64 chrX:6224985-6225065 ( 40) CTCTCTCT 1 chrX:8053093-8053173 ( 70) TTCTCTCT 1 chrI:14533010-14533090 ( 52) CTCTCTCT 1 chrI:7948192-7948272 ( 67) CTCTCTCT 1 chrI:10105487-10105567 ( 11) CTCTCTCT 1 chrI:9739509-9739589 ( 16) CTCTCTCT 1 chrI:4020700-4020780 ( 73) CTCTCTCT 1 chrX:6028782-6028862 ( 47) TTCTCTCT 1 chrIV:8813744-8813824 ( 2) TTCTCTCT 1 chrIII:13616966-13617046 ( 70) TTCTCTCT 1 chrI:9188065-9188145 ( 33) CTCTCTCT 1 chrIV:4643722-4643802 ( 18) CTCTCTCT 1 chrX:7661328-7661408 ( 32) CTCTCTCT 1 chrI:5072361-5072441 ( 42) CTCTCTCT 1 chrV:9112090-9112170 ( 9) TTCTCTCT 1 chrX:14054215-14054295 ( 16) TTCTCTCC 1 chrV:11034901-11034981 ( 10) CTCTCTCC 1 chrV:6768738-6768818 ( 50) CTCTCTCC 1 chrII:4038819-4038899 ( 33) CTCTCTCC 1 chrX:493099-493179 ( 23) TTCTCTCC 1 chrI:14245273-14245353 ( 32) CTCTCTCC 1 chrIV:4506762-4506842 ( 12) CTCTCTCC 1 chrX:16536428-16536508 ( 15) CTCTCTCC 1 chrII:6170375-6170455 ( 5) TTCTCTCC 1 chrV:14909480-14909560 ( 16) CTCTCTTT 1 chrV:6893868-6893948 ( 12) TTCTCTTT 1 chrX:6299836-6299916 ( 19) CTCTCTTT 1 chrI:7029955-7030035 ( 58) CTCTCTTT 1 chrIII:3583454-3583534 ( 41) CTCTCTTC 1 chrX:15575584-15575664 ( 36) TTCTCTTC 1 chrII:6181531-6181611 ( 56) TTCTCTTC 1 chrII:7722909-7722989 ( 5) TTCTCTTC 1 chrIV:379051-379131 ( 13) TTCTCTTC 1 chrI:7130921-7131001 ( 19) TTCTCTGT 1 chrII:161424-161504 ( 68) CTCTCTGT 1 chrV:7822774-7822854 ( 31) ATCTCTCT 1 chrX:11035727-11035807 ( 50) TTCTCTGT 1 chrIII:6744618-6744698 ( 63) TTCTCTGT 1 chrI:6769126-6769206 ( 26) TTCTCTGT 1 chrX:13873498-13873578 ( 56) TTCTCTGT 1 chrIV:6135761-6135841 ( 69) TTCTCTGT 1 chrI:5015809-5015889 ( 65) ATCTCTCT 1 chrIII:6742724-6742804 ( 59) TTCTCTGC 1 chrI:6236065-6236145 ( 53) TTCTTTCT 1 chrI:5777393-5777473 ( 16) CTCTTTCT 1 chrIII:3200711-3200791 ( 7) TTCTCTGC 1 chrX:3456788-3456868 ( 46) ATCTCTCC 1 chrX:14054945-14055025 ( 8) TTCTTTCC 1 chrIV:11710516-11710596 ( 68) ATCTCTTT 1 chrV:11958574-11958654 ( 26) ATCTCTTT 1 chrII:1529-1609 ( 56) ATCTCTTC 1 chrV:10010989-10011069 ( 7) ATCTCTTC 1 chrX:6597237-6597317 ( 39) TTCTTTTT 1 chrI:7385328-7385408 ( 55) TTCTTTTT 1 chrI:1304068-1304148 ( 68) TTCTTTTT 1 chrX:9832537-9832617 ( 17) TTCTTTTT 1 chrIV:7426276-7426356 ( 44) TTCTTTTT 1 chrII:6936709-6936789 ( 69) ATCTCTTC 1 chrV:2803414-2803494 ( 55) CTCTTTTC 1 chrX:14292780-14292860 ( 45) TTCTTTTC 1 chrV:14153805-14153885 ( 44) CTCTTTTC 1 chrV:12897026-12897106 ( 50) CTCTTTTC 1 chrIV:13561638-13561718 ( 15) TTCTTTTC 1 chrIII:5648472-5648552 ( 37) CTCTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTYY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 6.1e-022 -110 82 -1264 84 -1264 -1264 -1264 194 -1264 212 -1264 -1264 -1264 -1264 -1264 194 -1264 176 -1264 -26 -1264 -1264 -1264 194 -1264 103 -78 58 -1264 88 -1264 115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTYY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 6.1e-022 0.125000 0.406250 0.000000 0.468750 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.781250 0.000000 0.218750 0.000000 0.000000 0.000000 1.000000 0.000000 0.468750 0.140625 0.390625 0.000000 0.421875 0.000000 0.578125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTYY MEME-1 regular expression -------------------------------------------------------------------------------- [TC]TCT[CT]T[CT][TC] -------------------------------------------------------------------------------- Time 9.37 secs. ******************************************************************************** ******************************************************************************** MOTIF GARRRAGA MEME-2 width = 8 sites = 124 llr = 789 E-value = 3.0e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARRRAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 27674a18 pos.-specific C 22:::::2 probability G 72436:9: matrix T :::::::: bits 2.1 1.9 * 1.7 * 1.5 ** Relative 1.3 *** Entropy 1.1 ****** (9.2 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAGAGA consensus GGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3168967-3169047 31 1.94e-05 cagagagaga gaaagaga gagGGTCCCC chrII:1208762-1208842 35 1.94e-05 CTTTTAAAGA GAAAGAGA GGCAGGGAAT chrX:1080676-1080756 47 1.94e-05 GTGCGTGGGA GAAAGAGA GAGAGATATG chrV:12517979-12518059 51 1.94e-05 TTTGAGAAAA GAAAGAGA TAAGACACAT chrX:16389415-16389495 4 1.94e-05 AAA GAAAGAGA GAGAGAGAAG chrII:7722909-7722989 43 1.94e-05 ACATTGATTT GAAAGAGA GATTCAGACG chrI:4516214-4516294 36 1.94e-05 AGAGTGTGAG GAAAGAGA AGTGTCTCGG chrIII:3782905-3782985 19 3.68e-05 AAATGTGAGT GAGAGAGA GAAATGGATC chrIV:12615494-12615574 66 3.68e-05 gacagagaga gagagaga gagagag chrV:8196179-8196259 43 3.68e-05 GACCAAGAGT GAGAGAGA TGAAAAAGAA chrIII:2754079-2754159 63 3.68e-05 TGATAGAGAT GAGAGAGA AATGGAAATG chrX:14054945-14055025 41 3.68e-05 TACTCCTGCA GAGAGAGA AAAAGGTTTT chrX:14653668-14653748 15 7.57e-05 agaagaagaa gaaggaga agaagaagga chrI:11554608-11554688 15 7.57e-05 GGGTGGCAGA GAAAAAGA CAGAAAGGGG chrI:7948192-7948272 36 7.57e-05 ATCTCAATGT GAAGGAGA AGCAGCTTAA chrX:15943185-15943265 71 7.57e-05 AAGAGGGAGA GAAAAAGA AG chrV:6751831-6751911 36 7.57e-05 AAAAGTAAAG GAAAAAGA AGAAAAAAGC chrI:3891613-3891693 70 7.57e-05 AGAGGAAAAA GAAAAAGA AAG chrX:16534621-16534701 64 7.57e-05 GAGGTTGCGA GAAAAAGA TATGGGAAT chrI:14533010-14533090 12 1.11e-04 ATGGGACATC GAGAAAGA GTTGGCCATT chrI:4020700-4020780 19 1.11e-04 GTCTTCCCGA GAGGGAGA GCAATCGACC chrI:14245273-14245353 49 1.11e-04 CATCATCGCT GAGGGAGA TGAAGAGAAT chrIV:7426276-7426356 25 1.11e-04 aagtataaga gagaaaga gTCCCCCACT chrI:7029955-7030035 30 1.11e-04 GGAAAGGCGA GAGAAAGA AGAAGAAGAT chrX:1054110-1054190 24 1.30e-04 AAATAAAAAA GAAGAAGA AGCAACAACT chrV:6768738-6768818 24 1.30e-04 GGGATCGGCA GAAGAAGA CGGGAAGGAA chrIV:7098703-7098783 26 1.30e-04 agcagtagag gaagaaga tgatgatgaa chrIII:5428917-5428997 26 1.30e-04 AGAAAATAAT GAAGAAGA GATGCAAATT chrV:14153805-14153885 23 1.30e-04 TCTGAAGGGA GAAGAAGA AGCAGGATTT chrV:12234730-12234810 52 1.30e-04 TGAAGATAAA GAAGAAGA AAACGGAATC chrX:11560227-11560307 38 1.30e-04 GCAGTGCAAA GAAGAAGA AGTCATCTCA chrI:8461308-8461388 39 1.30e-04 ACCGATTGAA GAAGAAGA AACGGCACTA chrI:4046793-4046873 36 1.47e-04 CGGGATCCTG GCAAGAGA GCATCTGCCA chrX:3854029-3854109 16 1.47e-04 GAAAAGGGGA GCAAGAGA TATAGAAAAA chrII:161424-161504 20 1.86e-04 GGTGTACACT AAAAGAGA TCTAAAGAAA chrIV:7429053-7429133 6 1.86e-04 TGTCA AAAAGAGA TTTTGAGATG chrII:7909358-7909438 27 1.86e-04 AAGGCAATAG AAAAGAGA CTCTTGCGTC chrIII:5563881-5563961 11 1.86e-04 ggaataagaa ggaagaGA TATCTCCACA chrV:11074622-11074702 69 1.86e-04 AAAACGTTAG AAAAGAGA TGGC chrX:4965788-4965868 53 1.86e-04 AAGTAgaagt ggaagaga agggaagagg chrIV:4506762-4506842 72 1.86e-04 GCGGGGCgaa aaaagaga a chrI:5015809-5015889 27 1.86e-04 TTCTAAAAAC AAAAGAGA TAAAGCAAGA chrIV:12012534-12012614 38 2.21e-04 AGTATGGAGA GAGGAAGA GACGCAGATG chrIII:13616966-13617046 20 2.21e-04 ACACGGAAAT CAAAGAGA AAAGTAGGCT chrX:11821288-11821368 53 2.21e-04 AAAGTGTTCA GAGGAAGA GACGAAGAGT chrX:10410770-10410850 3 2.21e-04 TG GAGGAAGA ATATGTTCAT chrV:11073501-11073581 40 2.53e-04 AGAGACCGGG GCGAGAGA CAACATACAT chrV:12477324-12477404 27 2.53e-04 CTGCTGCTCC GAAAGAGC TCAGAGCATC chrIII:8815895-8815975 9 2.53e-04 GTAGCAAT GCGAGAGA GTATGAGCAG chrII:8783609-8783689 51 2.53e-04 TAGAGAGATG GAAAGAGC AAGGGATCCA chrII:13056751-13056831 47 2.53e-04 CCGGGATGAA GCGAGAGA GTCGTAAGGA chrI:14863574-14863654 63 2.88e-04 CGGCAGCGGC GGGAGAGA CGGGAACCCG chrV:11677676-11677756 27 2.88e-04 CTGACCTTTG AAGAGAGA CACAGAAAGA chrI:3405840-3405920 13 2.88e-04 AGGGAGTCAT GGGAGAGA GTAGCAGCAG chrII:8499222-8499302 3 3.38e-04 AA GCAGGAGA TGCTCCGGGA chrIII:8684612-8684692 9 3.38e-04 CGGGAACC CAGAGAGA CGCAGATATT chrI:12008244-12008324 23 3.38e-04 CCGCGGCATT GCAAAAGA GGTCTCCGCC chrIII:5931550-5931630 67 3.38e-04 GTATACTGAT CAGAGAGA CATTAG chrV:18581885-18581965 52 4.31e-04 GCCGTCGTAG GGAAAAGA GGCCAAACTT chrIV:607795-607875 25 4.31e-04 AGTGACTCGC AAAAAAGA CAGGTGTTTC chrII:8844946-8845026 68 4.31e-04 TAAAAGCGAG GGAGGAGA TGAAG chrIV:6014005-6014085 73 4.31e-04 CAGGATCCAC GAGAGAGC chrV:4157483-4157563 63 4.31e-04 ATCTTGTTAG GGAGGAGA AGCGACAAGT chrI:611817-611897 62 4.31e-04 GAGACGAAAA AAAAAAGA AAAATTGGGA chrV:17539426-17539506 45 4.68e-04 AGCAGTCGCC CAAGGAGA CACGAATGAC chrV:9247624-9247704 44 5.53e-04 GACAGAAACG GAAAGAAA ACTGGGGGAA chrII:6545170-6545250 14 5.53e-04 GTGAAACAAC GAAAGAAA ATGGAGGGAA chrV:284933-285013 61 5.53e-04 AGCATCAAGG GAAGGAGC CAACTGTCGT chrIII:5898725-5898805 24 5.53e-04 aatatcaata gaaaaagC TGAGGAGAAA chrII:6170375-6170455 55 5.53e-04 AATAAAGTGT GCGGGAGA TAGAGACGTA chrI:433703-433783 73 6.24e-04 ATTCCTCCCC AAGAAAGA chrIV:11571748-11571828 19 6.24e-04 GAACTTAGAA AAGAAAGA CGAAGACGCA chrX:3689534-3689614 17 6.24e-04 TCACCCGGGA GGGGGAGA AACATCGAGA chrX:13873498-13873578 16 6.24e-04 CAagaaggac aagggaga agctaacggg chrIV:9735056-9735136 37 6.24e-04 GATCTGAAGA GGGAAAGA TATCAGTATT chrX:11574401-11574481 59 6.74e-04 TTTTCGGCTC CAGGGAGA TATATAGTGG chrII:6482209-6482289 13 7.62e-04 ATGCGACTGA GGAGAAGA GGTTGATGAG chrV:20451953-20452033 71 7.62e-04 TGAGAAAATC GAGAGAAA AT chrX:5195610-5195690 33 7.62e-04 TCGAAGACGG AAAGAAGA GATCGGTTGC chrII:9764712-9764792 1 7.62e-04 . GAGAGAAA AAGGTATGAG chrV:14871490-14871570 1 7.62e-04 . AAAGAAGA TAGAATGCTC chrX:14292780-14292860 71 7.99e-04 CCGCGGGAAG CAAGAAGA TC chrIII:3927581-3927661 60 7.99e-04 ACATTCCCGC CAAGAAGA TGGCACATCC chrI:9955975-9956055 15 9.09e-04 CCTCCTCCGA GAAGGAAA ATGTGCGAGA chrIII:9859340-9859420 16 9.09e-04 CGCAGATGGA GAAAAAAA GCTGGGCGCT chrIV:5507916-5507996 16 9.09e-04 TAAATCACTG AGAAGAGA CAGGAGGCAT chrIV:7095633-7095713 64 9.09e-04 CATCAACGAC AGAAGAGA AACAACGAT chrI:6769126-6769206 12 9.09e-04 ATTTTAGAGC GAAGAAGC TTCTTCTTCT chrIV:6135761-6135841 55 9.09e-04 GTGTCACTCT GAAGGAAA TGATCCTTCT chrI:5072361-5072441 22 9.09e-04 TCCTGCACGG GAAGAAGC TAAAGTCGAC chrIV:17215198-17215278 1 9.09e-04 . GAAAAAAA AATCACACAC chrI:2861150-2861230 72 9.75e-04 ATGTCTGAGA CGAAGAGA T chrI:5020200-5020280 57 9.75e-04 TCATAGAGGG CGAAGAGA CGCAGAATGA chrI:8902564-8902644 52 9.75e-04 TGTAATTGTT CGAAGAGA CGGGAACTAA chrIV:5136580-5136660 70 1.04e-03 AAGCAGCGTA ACGAGAGA TCA chrV:6202713-6202793 49 1.04e-03 AGGAGCCACC AAAAGAGC AAGGGATTTG chrI:10262248-10262328 5 1.14e-03 GTGG GAGGAAGC TGGAGCAGGC chrI:12844244-12844324 43 1.14e-03 TGGCTCATCT CCGAGAGA ATGTGTAAAA chrX:8789200-8789280 14 1.14e-03 ATGGCATTGT CCGAGAGA CCCAAAGATA chrIV:11710516-11710596 33 1.21e-03 TCGCCTTGCG ACAAAAGA TAAATGGACT chrX:16655390-16655470 67 1.21e-03 GGGGCTCCCG GCGAGAGC GAGGGA chrII:4520139-4520219 19 1.21e-03 GCTGCTCCTT GCGAGAGC ACCAACTGTG chrIV:4639536-4639616 41 1.21e-03 TCGGAACGCG GCGAGAGC AGCTGCTCCG chrX:14728029-14728109 54 1.33e-03 CAGCAGAACT GAAGAAAA CAACACGTTT chrI:5777393-5777473 65 1.33e-03 GACAAaataa gaagaaaa cgaaaaga chrV:11307888-11307968 30 1.33e-03 TTTATGATTG AGAAAAGA GCACAGGGTA chrV:8667392-8667472 15 1.33e-03 GTGGGAGCTC CCAAAAGA TGCTCTCTGG chrX:5592656-5592736 52 1.42e-03 AAATGCAATG GCAAAAGC TTCCACGCCA chrI:10105487-10105567 25 1.42e-03 CTCTTTTCAT CAGAGAGC TTTCCTTTCC chrII:4805986-4806066 12 1.42e-03 TGAAGGAACT CGAAAAGA TAAATCATCG chrII:4038819-4038899 12 1.57e-03 GTGACCTCAG GGAGGAGC CGCCCTTTTT chrIII:9744656-9744736 37 1.57e-03 GGAAGAAACG AAAAGAAA TAAGAAGATG chrX:17667397-17667477 30 1.70e-03 ATCAGTGGCA CAAAGAAA ATGCCTTGTC chrI:4035599-4035679 48 1.70e-03 GGCGGACGAG CCGAAAGA ATAGGGATCA chrIII:3914978-3915058 35 1.70e-03 TCTATGTTGG CCGGGAGA GGGGCTCGGA chrIII:5572977-5573057 59 1.95e-03 ATTTCAAAGG AAGGGAGC TCCCGTCTAT chrI:1100740-1100820 7 1.95e-03 CGTCCC GGGAGAAA TACTCCCTCC chrX:16812085-16812165 15 1.95e-03 TGCCGGTGAG GGGAAAGC CTAGAAACAG chrI:6616082-6616162 14 2.06e-03 TGAGAAAATG CAGAGAAA TAAGAAGTCA chrV:12233618-12233698 9 2.22e-03 CGAGAGAT GAGAGAAC CTCAGATGTT chrX:15014097-15014177 73 2.22e-03 CGTTTGAAAT AAAGAAGC chrIV:12637523-12637603 64 2.32e-03 CTGATAATTA AGGGAAGA CGACGCTGG chrIV:5820214-5820294 35 2.45e-03 CCTGTCAAAT GCGGGAAA TAGGATGGAA chrV:6767693-6767773 44 2.45e-03 GTTGTGTAAT GCGGGAAA ATAGTGAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3168967-3169047 1.9e-05 30_[+2]_42 chrII:1208762-1208842 1.9e-05 34_[+2]_38 chrX:1080676-1080756 1.9e-05 46_[+2]_26 chrV:12517979-12518059 1.9e-05 50_[+2]_22 chrX:16389415-16389495 1.9e-05 3_[+2]_69 chrII:7722909-7722989 1.9e-05 42_[+2]_30 chrI:4516214-4516294 1.9e-05 35_[+2]_37 chrIII:3782905-3782985 3.7e-05 18_[+2]_54 chrIV:12615494-12615574 3.7e-05 65_[+2]_7 chrV:8196179-8196259 3.7e-05 42_[+2]_30 chrIII:2754079-2754159 3.7e-05 62_[+2]_10 chrX:14054945-14055025 3.7e-05 40_[+2]_32 chrX:14653668-14653748 7.6e-05 14_[+2]_58 chrI:11554608-11554688 7.6e-05 14_[+2]_58 chrI:7948192-7948272 7.6e-05 35_[+2]_37 chrX:15943185-15943265 7.6e-05 70_[+2]_2 chrV:6751831-6751911 7.6e-05 35_[+2]_37 chrI:3891613-3891693 7.6e-05 69_[+2]_3 chrX:16534621-16534701 7.6e-05 63_[+2]_9 chrI:14533010-14533090 0.00011 11_[+2]_61 chrI:4020700-4020780 0.00011 18_[+2]_54 chrI:14245273-14245353 0.00011 48_[+2]_24 chrIV:7426276-7426356 0.00011 24_[+2]_48 chrI:7029955-7030035 0.00011 29_[+2]_43 chrX:1054110-1054190 0.00013 23_[+2]_49 chrV:6768738-6768818 0.00013 23_[+2]_49 chrIV:7098703-7098783 0.00013 25_[+2]_47 chrIII:5428917-5428997 0.00013 25_[+2]_47 chrV:14153805-14153885 0.00013 22_[+2]_50 chrV:12234730-12234810 0.00013 51_[+2]_21 chrX:11560227-11560307 0.00013 37_[+2]_35 chrI:8461308-8461388 0.00013 38_[+2]_34 chrI:4046793-4046873 0.00015 35_[+2]_37 chrX:3854029-3854109 0.00015 15_[+2]_57 chrII:161424-161504 0.00019 19_[+2]_53 chrIV:7429053-7429133 0.00019 5_[+2]_67 chrII:7909358-7909438 0.00019 26_[+2]_46 chrIII:5563881-5563961 0.00019 10_[+2]_62 chrV:11074622-11074702 0.00019 68_[+2]_4 chrX:4965788-4965868 0.00019 52_[+2]_20 chrIV:4506762-4506842 0.00019 71_[+2]_1 chrI:5015809-5015889 0.00019 26_[+2]_46 chrIV:12012534-12012614 0.00022 37_[+2]_35 chrIII:13616966-13617046 0.00022 19_[+2]_53 chrX:11821288-11821368 0.00022 52_[+2]_20 chrX:10410770-10410850 0.00022 2_[+2]_70 chrV:11073501-11073581 0.00025 39_[+2]_33 chrV:12477324-12477404 0.00025 26_[+2]_46 chrIII:8815895-8815975 0.00025 8_[+2]_64 chrII:8783609-8783689 0.00025 50_[+2]_22 chrII:13056751-13056831 0.00025 46_[+2]_26 chrI:14863574-14863654 0.00029 62_[+2]_10 chrV:11677676-11677756 0.00029 26_[+2]_46 chrI:3405840-3405920 0.00029 12_[+2]_60 chrII:8499222-8499302 0.00034 2_[+2]_70 chrIII:8684612-8684692 0.00034 8_[+2]_64 chrI:12008244-12008324 0.00034 22_[+2]_50 chrIII:5931550-5931630 0.00034 66_[+2]_6 chrV:18581885-18581965 0.00043 51_[+2]_21 chrIV:607795-607875 0.00043 24_[+2]_48 chrII:8844946-8845026 0.00043 67_[+2]_5 chrIV:6014005-6014085 0.00043 72_[+2] chrV:4157483-4157563 0.00043 62_[+2]_10 chrI:611817-611897 0.00043 61_[+2]_11 chrV:17539426-17539506 0.00047 44_[+2]_28 chrV:9247624-9247704 0.00055 43_[+2]_29 chrII:6545170-6545250 0.00055 13_[+2]_59 chrV:284933-285013 0.00055 60_[+2]_12 chrIII:5898725-5898805 0.00055 23_[+2]_49 chrII:6170375-6170455 0.00055 54_[+2]_18 chrI:433703-433783 0.00062 72_[+2] chrIV:11571748-11571828 0.00062 18_[+2]_54 chrX:3689534-3689614 0.00062 16_[+2]_56 chrX:13873498-13873578 0.00062 15_[+2]_57 chrIV:9735056-9735136 0.00062 36_[+2]_36 chrX:11574401-11574481 0.00067 58_[+2]_14 chrII:6482209-6482289 0.00076 12_[+2]_60 chrV:20451953-20452033 0.00076 70_[+2]_2 chrX:5195610-5195690 0.00076 32_[+2]_40 chrII:9764712-9764792 0.00076 [+2]_72 chrV:14871490-14871570 0.00076 [+2]_72 chrX:14292780-14292860 0.0008 70_[+2]_2 chrIII:3927581-3927661 0.0008 59_[+2]_13 chrI:9955975-9956055 0.00091 14_[+2]_58 chrIII:9859340-9859420 0.00091 15_[+2]_57 chrIV:5507916-5507996 0.00091 15_[+2]_57 chrIV:7095633-7095713 0.00091 63_[+2]_9 chrI:6769126-6769206 0.00091 11_[+2]_61 chrIV:6135761-6135841 0.00091 54_[+2]_18 chrI:5072361-5072441 0.00091 21_[+2]_51 chrIV:17215198-17215278 0.00091 [+2]_72 chrI:2861150-2861230 0.00097 71_[+2]_1 chrI:5020200-5020280 0.00097 56_[+2]_16 chrI:8902564-8902644 0.00097 51_[+2]_21 chrIV:5136580-5136660 0.001 69_[+2]_3 chrV:6202713-6202793 0.001 48_[+2]_24 chrI:10262248-10262328 0.0011 4_[+2]_68 chrI:12844244-12844324 0.0011 42_[+2]_30 chrX:8789200-8789280 0.0011 13_[+2]_59 chrIV:11710516-11710596 0.0012 32_[+2]_40 chrX:16655390-16655470 0.0012 66_[+2]_6 chrII:4520139-4520219 0.0012 18_[+2]_54 chrIV:4639536-4639616 0.0012 40_[+2]_32 chrX:14728029-14728109 0.0013 53_[+2]_19 chrI:5777393-5777473 0.0013 64_[+2]_8 chrV:11307888-11307968 0.0013 29_[+2]_43 chrV:8667392-8667472 0.0013 14_[+2]_58 chrX:5592656-5592736 0.0014 51_[+2]_21 chrI:10105487-10105567 0.0014 24_[+2]_48 chrII:4805986-4806066 0.0014 11_[+2]_61 chrII:4038819-4038899 0.0016 11_[+2]_61 chrIII:9744656-9744736 0.0016 36_[+2]_36 chrX:17667397-17667477 0.0017 29_[+2]_43 chrI:4035599-4035679 0.0017 47_[+2]_25 chrIII:3914978-3915058 0.0017 34_[+2]_38 chrIII:5572977-5573057 0.0019 58_[+2]_14 chrI:1100740-1100820 0.0019 6_[+2]_66 chrX:16812085-16812165 0.0019 14_[+2]_58 chrI:6616082-6616162 0.0021 13_[+2]_59 chrV:12233618-12233698 0.0022 8_[+2]_64 chrX:15014097-15014177 0.0022 72_[+2] chrIV:12637523-12637603 0.0023 63_[+2]_9 chrIV:5820214-5820294 0.0025 34_[+2]_38 chrV:6767693-6767773 0.0025 43_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARRRAGA width=8 seqs=124 chrIV:3168967-3169047 ( 31) GAAAGAGA 1 chrII:1208762-1208842 ( 35) GAAAGAGA 1 chrX:1080676-1080756 ( 47) GAAAGAGA 1 chrV:12517979-12518059 ( 51) GAAAGAGA 1 chrX:16389415-16389495 ( 4) GAAAGAGA 1 chrII:7722909-7722989 ( 43) GAAAGAGA 1 chrI:4516214-4516294 ( 36) GAAAGAGA 1 chrIII:3782905-3782985 ( 19) GAGAGAGA 1 chrIV:12615494-12615574 ( 66) GAGAGAGA 1 chrV:8196179-8196259 ( 43) GAGAGAGA 1 chrIII:2754079-2754159 ( 63) GAGAGAGA 1 chrX:14054945-14055025 ( 41) GAGAGAGA 1 chrX:14653668-14653748 ( 15) GAAGGAGA 1 chrI:11554608-11554688 ( 15) GAAAAAGA 1 chrI:7948192-7948272 ( 36) GAAGGAGA 1 chrX:15943185-15943265 ( 71) GAAAAAGA 1 chrV:6751831-6751911 ( 36) GAAAAAGA 1 chrI:3891613-3891693 ( 70) GAAAAAGA 1 chrX:16534621-16534701 ( 64) GAAAAAGA 1 chrI:14533010-14533090 ( 12) GAGAAAGA 1 chrI:4020700-4020780 ( 19) GAGGGAGA 1 chrI:14245273-14245353 ( 49) GAGGGAGA 1 chrIV:7426276-7426356 ( 25) GAGAAAGA 1 chrI:7029955-7030035 ( 30) GAGAAAGA 1 chrX:1054110-1054190 ( 24) GAAGAAGA 1 chrV:6768738-6768818 ( 24) GAAGAAGA 1 chrIV:7098703-7098783 ( 26) GAAGAAGA 1 chrIII:5428917-5428997 ( 26) GAAGAAGA 1 chrV:14153805-14153885 ( 23) GAAGAAGA 1 chrV:12234730-12234810 ( 52) GAAGAAGA 1 chrX:11560227-11560307 ( 38) GAAGAAGA 1 chrI:8461308-8461388 ( 39) GAAGAAGA 1 chrI:4046793-4046873 ( 36) GCAAGAGA 1 chrX:3854029-3854109 ( 16) GCAAGAGA 1 chrII:161424-161504 ( 20) AAAAGAGA 1 chrIV:7429053-7429133 ( 6) AAAAGAGA 1 chrII:7909358-7909438 ( 27) AAAAGAGA 1 chrIII:5563881-5563961 ( 11) GGAAGAGA 1 chrV:11074622-11074702 ( 69) AAAAGAGA 1 chrX:4965788-4965868 ( 53) GGAAGAGA 1 chrIV:4506762-4506842 ( 72) AAAAGAGA 1 chrI:5015809-5015889 ( 27) AAAAGAGA 1 chrIV:12012534-12012614 ( 38) GAGGAAGA 1 chrIII:13616966-13617046 ( 20) CAAAGAGA 1 chrX:11821288-11821368 ( 53) GAGGAAGA 1 chrX:10410770-10410850 ( 3) GAGGAAGA 1 chrV:11073501-11073581 ( 40) GCGAGAGA 1 chrV:12477324-12477404 ( 27) GAAAGAGC 1 chrIII:8815895-8815975 ( 9) GCGAGAGA 1 chrII:8783609-8783689 ( 51) GAAAGAGC 1 chrII:13056751-13056831 ( 47) GCGAGAGA 1 chrI:14863574-14863654 ( 63) GGGAGAGA 1 chrV:11677676-11677756 ( 27) AAGAGAGA 1 chrI:3405840-3405920 ( 13) GGGAGAGA 1 chrII:8499222-8499302 ( 3) GCAGGAGA 1 chrIII:8684612-8684692 ( 9) CAGAGAGA 1 chrI:12008244-12008324 ( 23) GCAAAAGA 1 chrIII:5931550-5931630 ( 67) CAGAGAGA 1 chrV:18581885-18581965 ( 52) GGAAAAGA 1 chrIV:607795-607875 ( 25) AAAAAAGA 1 chrII:8844946-8845026 ( 68) GGAGGAGA 1 chrIV:6014005-6014085 ( 73) GAGAGAGC 1 chrV:4157483-4157563 ( 63) GGAGGAGA 1 chrI:611817-611897 ( 62) AAAAAAGA 1 chrV:17539426-17539506 ( 45) CAAGGAGA 1 chrV:9247624-9247704 ( 44) GAAAGAAA 1 chrII:6545170-6545250 ( 14) GAAAGAAA 1 chrV:284933-285013 ( 61) GAAGGAGC 1 chrIII:5898725-5898805 ( 24) GAAAAAGC 1 chrII:6170375-6170455 ( 55) GCGGGAGA 1 chrI:433703-433783 ( 73) AAGAAAGA 1 chrIV:11571748-11571828 ( 19) AAGAAAGA 1 chrX:3689534-3689614 ( 17) GGGGGAGA 1 chrX:13873498-13873578 ( 16) AAGGGAGA 1 chrIV:9735056-9735136 ( 37) GGGAAAGA 1 chrX:11574401-11574481 ( 59) CAGGGAGA 1 chrII:6482209-6482289 ( 13) GGAGAAGA 1 chrV:20451953-20452033 ( 71) GAGAGAAA 1 chrX:5195610-5195690 ( 33) AAAGAAGA 1 chrII:9764712-9764792 ( 1) GAGAGAAA 1 chrV:14871490-14871570 ( 1) AAAGAAGA 1 chrX:14292780-14292860 ( 71) CAAGAAGA 1 chrIII:3927581-3927661 ( 60) CAAGAAGA 1 chrI:9955975-9956055 ( 15) GAAGGAAA 1 chrIII:9859340-9859420 ( 16) GAAAAAAA 1 chrIV:5507916-5507996 ( 16) AGAAGAGA 1 chrIV:7095633-7095713 ( 64) AGAAGAGA 1 chrI:6769126-6769206 ( 12) GAAGAAGC 1 chrIV:6135761-6135841 ( 55) GAAGGAAA 1 chrI:5072361-5072441 ( 22) GAAGAAGC 1 chrIV:17215198-17215278 ( 1) GAAAAAAA 1 chrI:2861150-2861230 ( 72) CGAAGAGA 1 chrI:5020200-5020280 ( 57) CGAAGAGA 1 chrI:8902564-8902644 ( 52) CGAAGAGA 1 chrIV:5136580-5136660 ( 70) ACGAGAGA 1 chrV:6202713-6202793 ( 49) AAAAGAGC 1 chrI:10262248-10262328 ( 5) GAGGAAGC 1 chrI:12844244-12844324 ( 43) CCGAGAGA 1 chrX:8789200-8789280 ( 14) CCGAGAGA 1 chrIV:11710516-11710596 ( 33) ACAAAAGA 1 chrX:16655390-16655470 ( 67) GCGAGAGC 1 chrII:4520139-4520219 ( 19) GCGAGAGC 1 chrIV:4639536-4639616 ( 41) GCGAGAGC 1 chrX:14728029-14728109 ( 54) GAAGAAAA 1 chrI:5777393-5777473 ( 65) GAAGAAAA 1 chrV:11307888-11307968 ( 30) AGAAAAGA 1 chrV:8667392-8667472 ( 15) CCAAAAGA 1 chrX:5592656-5592736 ( 52) GCAAAAGC 1 chrI:10105487-10105567 ( 25) CAGAGAGC 1 chrII:4805986-4806066 ( 12) CGAAAAGA 1 chrII:4038819-4038899 ( 12) GGAGGAGC 1 chrIII:9744656-9744736 ( 37) AAAAGAAA 1 chrX:17667397-17667477 ( 30) CAAAGAAA 1 chrI:4035599-4035679 ( 48) CCGAAAGA 1 chrIII:3914978-3915058 ( 35) CCGGGAGA 1 chrIII:5572977-5573057 ( 59) AAGGGAGC 1 chrI:1100740-1100820 ( 7) GGGAGAAA 1 chrX:16812085-16812165 ( 15) GGGAAAGC 1 chrI:6616082-6616162 ( 14) CAGAGAAA 1 chrV:12233618-12233698 ( 9) GAGAGAAC 1 chrX:15014097-15014177 ( 73) AAAGAAGC 1 chrIV:12637523-12637603 ( 64) AGGGAAGA 1 chrIV:5820214-5820294 ( 35) GCGGGAAA 1 chrV:6767693-6767773 ( 44) GCGGGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.49627 E= 3.0e-014 -47 -59 144 -1360 130 -44 -51 -1360 117 -1360 71 -1360 129 -1360 53 -1360 53 -1360 135 -1360 190 -1360 -1360 -1360 -97 -1360 184 -1360 166 -59 -1360 -1360 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 3.0e-014 0.193548 0.153226 0.653226 0.000000 0.661290 0.169355 0.169355 0.000000 0.604839 0.000000 0.395161 0.000000 0.653226 0.000000 0.346774 0.000000 0.387097 0.000000 0.612903 0.000000 1.000000 0.000000 0.000000 0.000000 0.137097 0.000000 0.862903 0.000000 0.846774 0.153226 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-2 regular expression -------------------------------------------------------------------------------- GA[AG][AG][GA]AGA -------------------------------------------------------------------------------- Time 13.34 secs. ******************************************************************************** ******************************************************************************** MOTIF BCTYCTYC MEME-3 width = 8 sites = 40 llr = 327 E-value = 2.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCTYCTYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 4a:6a35a probability G 2::::::: matrix T 4:a5:76: bits 2.1 * * * 1.9 * * * 1.7 ** * * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 ******* (11.8 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCCTTC consensus C T CC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTYCTYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:8332345-8332425 46 1.30e-05 ATTATCTGCG TCTCCTTC TCGTACCTGA chrX:16525768-16525848 24 1.30e-05 AGTCTCGTCT TCTCCTTC GCTTCTCTAC chrI:6236065-6236145 1 1.30e-05 . TCTCCTTC CCTCATTTCC chrI:10491062-10491142 53 3.59e-05 TCTCTCACCT TCTCCTCC CTTCCTGCGG chrX:6597237-6597317 7 3.59e-05 GGGGCG TCTCCTCC ATCTGCCTGC chrI:9955975-9956055 5 4.60e-05 GAGA CCTCCTCC GAGAAGGAAA chrX:1096934-1097014 24 4.60e-05 AATCAAGGTC CCTCCTCC GTTTGCCTTT chrII:8769530-8769610 39 4.60e-05 CGCGCCGCCG CCTCCTCC GAATGCGGCG chrX:15014097-15014177 11 4.60e-05 TATTGTTGTG CCTCCTCC CACCAATTGG chrII:6181531-6181611 15 4.60e-05 CTCACTTTCT CCTCCTCC CGAAAATGCG chrI:3405840-3405920 33 4.60e-05 AGCAGCAGGC CCTCCTCC ACTCCAGGAC chrX:16536428-16536508 26 4.60e-05 TCTCTCCTTG CCTCCTCC CAATCCCTCT chrX:15575584-15575664 13 6.07e-05 CTTCTCTTCC TCTTCTTC ATCCAGCAGT chrIII:8815895-8815975 61 6.07e-05 GGCAACTGCT TCTTCTTC TGCTGCTCCT chrX:14292780-14292860 21 6.07e-05 ttcttattct tcttcttc ttcatcttat chrI:7385328-7385408 22 6.07e-05 CATCTCACAC TCTTCTTC TACTACACAT chrX:2950407-2950487 54 6.07e-05 GCTCTCATTT TCTTCTTC CTCACCCGGA chrI:10840031-10840111 73 8.67e-05 cttcttcatt ccttcttc chrIV:13561638-13561718 4 8.67e-05 TCC CCTTCTTC TTCTTCTTTT chrIII:5486457-5486537 18 8.67e-05 TGACCTTATC CCTTCTTC CTCTTCACAT chrIV:282131-282211 52 1.32e-04 AACAATCTAT GCTCCTCC CCACAAGTCG chrX:7573749-7573829 70 1.32e-04 GTGTCTGCAG TCTCCCTC AAT chrI:7028277-7028357 20 1.32e-04 TATCTCCTGC TCTCCCTC AGGTGTTGAG chrIII:3200711-3200791 41 1.32e-04 ACTATCTTTG GCTCCTCC CATTTTTCTT chrX:8053093-8053173 58 1.52e-04 AAATCGGCGC CCTCCCTC CCGCTTCTCT chrX:11574401-11574481 4 1.52e-04 TGT CCTCCCTC GCACAATTGT chrI:1100740-1100820 20 1.52e-04 AGAAATACTC CCTCCCTC TCAAAATGCA chrX:14054215-14054295 37 1.75e-04 TTCAGATACC GCTTCTTC ATTCCCCTCC chrIII:3583454-3583534 60 1.75e-04 cttctattcg gcttcttc CATATGTTCG chrX:16392325-16392405 31 1.75e-04 CTCATCTTGT GCTTCTTC TCGGCGAGAT chrIII:13616966-13617046 35 1.75e-04 AGAAAAGTAG GCTTCTTC TACAGCATCT chrI:10105487-10105567 69 2.00e-04 GTTTTTGCTG TCTTCCTC TTCA chrV:6893868-6893948 2 2.00e-04 T TCTTCCTC TTTTCTCTTT chrII:4805986-4806066 37 2.00e-04 TCGACAGGTG GCTTCTCC TGCTCAAAGA chrIV:5986912-5986992 62 2.23e-04 AGAGCAAAAT TCTTCCCC GGCTTCTCGG chrX:6028782-6028862 19 2.23e-04 CGTGCTTCAA TCTTCCCC CATCCGTCGG chrV:2803414-2803494 20 2.43e-04 TCTTTTCCTT CCTTCCCC CGCACACACA chrIV:8850922-8851002 64 2.53e-04 CATTCCGAGA GCTCCCCC GGCTCTCGG chrX:14684543-14684623 62 2.53e-04 CTTATTCTCA GCTCCCCC CTTTACAACG chrIV:10048351-10048431 20 3.07e-04 CACTCACTTT TCCCCTCC AGCAGAGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTYCTYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:8332345-8332425 1.3e-05 45_[+3]_27 chrX:16525768-16525848 1.3e-05 23_[+3]_49 chrI:6236065-6236145 1.3e-05 [+3]_72 chrI:10491062-10491142 3.6e-05 52_[+3]_20 chrX:6597237-6597317 3.6e-05 6_[+3]_66 chrI:9955975-9956055 4.6e-05 4_[+3]_68 chrX:1096934-1097014 4.6e-05 23_[+3]_49 chrII:8769530-8769610 4.6e-05 38_[+3]_34 chrX:15014097-15014177 4.6e-05 10_[+3]_62 chrII:6181531-6181611 4.6e-05 14_[+3]_58 chrI:3405840-3405920 4.6e-05 32_[+3]_40 chrX:16536428-16536508 4.6e-05 25_[+3]_47 chrX:15575584-15575664 6.1e-05 12_[+3]_60 chrIII:8815895-8815975 6.1e-05 60_[+3]_12 chrX:14292780-14292860 6.1e-05 20_[+3]_52 chrI:7385328-7385408 6.1e-05 21_[+3]_51 chrX:2950407-2950487 6.1e-05 53_[+3]_19 chrI:10840031-10840111 8.7e-05 72_[+3] chrIV:13561638-13561718 8.7e-05 3_[+3]_69 chrIII:5486457-5486537 8.7e-05 17_[+3]_55 chrIV:282131-282211 0.00013 51_[+3]_21 chrX:7573749-7573829 0.00013 69_[+3]_3 chrI:7028277-7028357 0.00013 19_[+3]_53 chrIII:3200711-3200791 0.00013 40_[+3]_32 chrX:8053093-8053173 0.00015 57_[+3]_15 chrX:11574401-11574481 0.00015 3_[+3]_69 chrI:1100740-1100820 0.00015 19_[+3]_53 chrX:14054215-14054295 0.00017 36_[+3]_36 chrIII:3583454-3583534 0.00017 59_[+3]_13 chrX:16392325-16392405 0.00017 30_[+3]_42 chrIII:13616966-13617046 0.00017 34_[+3]_38 chrI:10105487-10105567 0.0002 68_[+3]_4 chrV:6893868-6893948 0.0002 1_[+3]_71 chrII:4805986-4806066 0.0002 36_[+3]_36 chrIV:5986912-5986992 0.00022 61_[+3]_11 chrX:6028782-6028862 0.00022 18_[+3]_54 chrV:2803414-2803494 0.00024 19_[+3]_53 chrIV:8850922-8851002 0.00025 63_[+3]_9 chrX:14684543-14684623 0.00025 61_[+3]_11 chrIV:10048351-10048431 0.00031 19_[+3]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTYCTYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCTYCTYC width=8 seqs=40 chrV:8332345-8332425 ( 46) TCTCCTTC 1 chrX:16525768-16525848 ( 24) TCTCCTTC 1 chrI:6236065-6236145 ( 1) TCTCCTTC 1 chrI:10491062-10491142 ( 53) TCTCCTCC 1 chrX:6597237-6597317 ( 7) TCTCCTCC 1 chrI:9955975-9956055 ( 5) CCTCCTCC 1 chrX:1096934-1097014 ( 24) CCTCCTCC 1 chrII:8769530-8769610 ( 39) CCTCCTCC 1 chrX:15014097-15014177 ( 11) CCTCCTCC 1 chrII:6181531-6181611 ( 15) CCTCCTCC 1 chrI:3405840-3405920 ( 33) CCTCCTCC 1 chrX:16536428-16536508 ( 26) CCTCCTCC 1 chrX:15575584-15575664 ( 13) TCTTCTTC 1 chrIII:8815895-8815975 ( 61) TCTTCTTC 1 chrX:14292780-14292860 ( 21) TCTTCTTC 1 chrI:7385328-7385408 ( 22) TCTTCTTC 1 chrX:2950407-2950487 ( 54) TCTTCTTC 1 chrI:10840031-10840111 ( 73) CCTTCTTC 1 chrIV:13561638-13561718 ( 4) CCTTCTTC 1 chrIII:5486457-5486537 ( 18) CCTTCTTC 1 chrIV:282131-282211 ( 52) GCTCCTCC 1 chrX:7573749-7573829 ( 70) TCTCCCTC 1 chrI:7028277-7028357 ( 20) TCTCCCTC 1 chrIII:3200711-3200791 ( 41) GCTCCTCC 1 chrX:8053093-8053173 ( 58) CCTCCCTC 1 chrX:11574401-11574481 ( 4) CCTCCCTC 1 chrI:1100740-1100820 ( 20) CCTCCCTC 1 chrX:14054215-14054295 ( 37) GCTTCTTC 1 chrIII:3583454-3583534 ( 60) GCTTCTTC 1 chrX:16392325-16392405 ( 31) GCTTCTTC 1 chrIII:13616966-13617046 ( 35) GCTTCTTC 1 chrI:10105487-10105567 ( 69) TCTTCCTC 1 chrV:6893868-6893948 ( 2) TCTTCCTC 1 chrII:4805986-4806066 ( 37) GCTTCTCC 1 chrIV:5986912-5986992 ( 62) TCTTCCCC 1 chrX:6028782-6028862 ( 19) TCTTCCCC 1 chrV:2803414-2803494 ( 20) CCTTCCCC 1 chrIV:8850922-8851002 ( 64) GCTCCCCC 1 chrX:14684543-14684623 ( 62) GCTCCCCC 1 chrIV:10048351-10048431 ( 20) TCCCCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTYCTYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 2.3e-004 -1197 61 -10 70 -1197 212 -1197 -1197 -1197 -320 -1197 190 -1197 126 -1197 78 -1197 212 -1197 -1197 -1197 38 -1197 142 -1197 97 -1197 107 -1197 212 -1197 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTYCTYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 2.3e-004 0.000000 0.350000 0.225000 0.425000 0.000000 1.000000 0.000000 0.000000 0.000000 0.025000 0.000000 0.975000 0.000000 0.550000 0.000000 0.450000 0.000000 1.000000 0.000000 0.000000 0.000000 0.300000 0.000000 0.700000 0.000000 0.450000 0.000000 0.550000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTYCTYC MEME-3 regular expression -------------------------------------------------------------------------------- [TCG]CT[CT]C[TC][TC]C -------------------------------------------------------------------------------- Time 16.76 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-4 width = 8 sites = 23 llr = 201 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C :1::::21 probability G :9:a2a:8 matrix T a:a:8:8: bits 2.1 1.9 * * 1.7 * ** * 1.5 **** * Relative 1.3 ******* Entropy 1.1 ******** (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:282131-282211 17 1.57e-05 ATTTCATCTA TGTGTGTG CTCTTCTCAT chrIV:5136580-5136660 28 1.57e-05 GGTGAGTGTG TGTGTGTG GGGCATATCT chrIII:9744656-9744736 64 1.57e-05 GAGACGTATG TGTGTGTG TGTCCACTA chrI:8459272-8459352 30 1.57e-05 ACCTAACATG TGTGTGTG TCTATGCTTG chrIII:1943655-1943735 44 1.57e-05 CACGTtgtga tgtgtgtg tgtgtgtggt chrII:2726926-2727006 13 1.57e-05 ACGCGACATG TGTGTGTG CCTATCATCA chrI:11559358-11559438 6 1.57e-05 GTGTG TGTGTGTG CTCCCGGAGC chrI:5072361-5072441 62 1.57e-05 CTAGTCTATG TGTGTGTG TTACAGCAGT chrX:10410770-10410850 49 1.57e-05 TCTATGTCTC TGTGTGTG TTTTTGTTGT chrI:14863574-14863654 41 2.94e-05 GGTGTAAAGC TGTGTGCG GCAGCGGCAG chrIV:379051-379131 62 4.39e-05 TGATGATATC TGTGGGTG CGTGTGCATC chrIV:1107351-1107431 48 5.88e-05 TCCGCCCAGA TCTGTGTG CTCGGTGAGC chrII:580301-580381 39 5.88e-05 TATGGTGTTT TCTGTGTG CTTCTGCGTC chrIV:17215198-17215278 49 5.88e-05 TAAAGGAAAC TCTGTGTG GCCCCCAATG chrIV:4643722-4643802 48 7.63e-05 TTTCTCCAGA TGTGTGTA ACACCCCTCT chrX:8052202-8052282 5 7.63e-05 TGTA TGTGTGTA TGTGTGTAAC chrX:11035727-11035807 61 9.12e-05 TCTCTGTCCC TGTGTGTC TATCAATATG chrI:9199341-9199421 52 1.04e-04 AACGGCAAAA TGTGGGCG TGGCCTATTT chrI:8459070-8459150 11 1.04e-04 GGCTGCCGTT TGTGGGCG GGATCCCTCA chrX:7573749-7573829 59 1.19e-04 GGGACACTTC TGTGTCTG CAGTCTCCCT chrV:12697543-12697623 16 1.49e-04 CCATTTGTTT TGTTTGTG ATCATGAGAT chrX:1096934-1097014 71 1.78e-04 TGTGGTGCAT TGTGTGCA TG chrX:6597237-6597317 48 2.21e-04 GTTCTTTTTA TGTGGGTC CACGGTGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:282131-282211 1.6e-05 16_[+4]_56 chrIV:5136580-5136660 1.6e-05 27_[+4]_45 chrIII:9744656-9744736 1.6e-05 63_[+4]_9 chrI:8459272-8459352 1.6e-05 29_[+4]_43 chrIII:1943655-1943735 1.6e-05 43_[+4]_29 chrII:2726926-2727006 1.6e-05 12_[+4]_60 chrI:11559358-11559438 1.6e-05 5_[+4]_67 chrI:5072361-5072441 1.6e-05 61_[+4]_11 chrX:10410770-10410850 1.6e-05 48_[+4]_24 chrI:14863574-14863654 2.9e-05 40_[+4]_32 chrIV:379051-379131 4.4e-05 61_[+4]_11 chrIV:1107351-1107431 5.9e-05 47_[+4]_25 chrII:580301-580381 5.9e-05 38_[+4]_34 chrIV:17215198-17215278 5.9e-05 48_[+4]_24 chrIV:4643722-4643802 7.6e-05 47_[+4]_25 chrX:8052202-8052282 7.6e-05 4_[+4]_68 chrX:11035727-11035807 9.1e-05 60_[+4]_12 chrI:9199341-9199421 0.0001 51_[+4]_21 chrI:8459070-8459150 0.0001 10_[+4]_62 chrX:7573749-7573829 0.00012 58_[+4]_14 chrV:12697543-12697623 0.00015 15_[+4]_57 chrX:1096934-1097014 0.00018 70_[+4]_2 chrX:6597237-6597317 0.00022 47_[+4]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=23 chrIV:282131-282211 ( 17) TGTGTGTG 1 chrIV:5136580-5136660 ( 28) TGTGTGTG 1 chrIII:9744656-9744736 ( 64) TGTGTGTG 1 chrI:8459272-8459352 ( 30) TGTGTGTG 1 chrIII:1943655-1943735 ( 44) TGTGTGTG 1 chrII:2726926-2727006 ( 13) TGTGTGTG 1 chrI:11559358-11559438 ( 6) TGTGTGTG 1 chrI:5072361-5072441 ( 62) TGTGTGTG 1 chrX:10410770-10410850 ( 49) TGTGTGTG 1 chrI:14863574-14863654 ( 41) TGTGTGCG 1 chrIV:379051-379131 ( 62) TGTGGGTG 1 chrIV:1107351-1107431 ( 48) TCTGTGTG 1 chrII:580301-580381 ( 39) TCTGTGTG 1 chrIV:17215198-17215278 ( 49) TCTGTGTG 1 chrIV:4643722-4643802 ( 48) TGTGTGTA 1 chrX:8052202-8052282 ( 5) TGTGTGTA 1 chrX:11035727-11035807 ( 61) TGTGTGTC 1 chrI:9199341-9199421 ( 52) TGTGGGCG 1 chrI:8459070-8459150 ( 11) TGTGGGCG 1 chrX:7573749-7573829 ( 59) TGTGTCTG 1 chrV:12697543-12697623 ( 16) TGTTTGTG 1 chrX:1096934-1097014 ( 71) TGTGTGCA 1 chrX:6597237-6597317 ( 48) TGTGGGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 1.4e+002 -1117 -1117 -1117 194 -1117 -82 185 -1117 -1117 -1117 -1117 194 -1117 -1117 199 -258 -1117 -1117 -47 166 -1117 -240 199 -1117 -1117 -40 -1117 166 -104 -140 170 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.4e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.130435 0.869565 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.956522 0.043478 0.000000 0.000000 0.173913 0.826087 0.000000 0.043478 0.956522 0.000000 0.000000 0.173913 0.000000 0.826087 0.130435 0.086957 0.782609 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 20.11 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACAMA MEME-5 width = 8 sites = 23 llr = 199 E-value = 3.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACAMA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :8:a:a3a pos.-specific C 7:9:a:6: probability G :21::::: matrix T 3:::::1: bits 2.1 * 1.9 *** * 1.7 *** * 1.5 **** * Relative 1.3 ****** * Entropy 1.1 ****** * (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus TG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:433703-433783 38 1.44e-05 TGAacacaca cacacaca catacTTTTC chrV:9295805-9295885 57 1.44e-05 TTGCcacaca cacacaca caaacacaGC chrV:2803414-2803494 34 1.44e-05 CCCCCGCACA CACACACA CACCTTTTTG chrIII:5565892-5565972 9 1.44e-05 TCTCTTGG CACACACA AACACACACA chrV:12234730-12234810 27 1.44e-05 ATACAACACG CACACACA TCATCGTTGA chrX:9832537-9832617 2 1.44e-05 A CACACACA TACGTTCTTC chrX:3456788-3456868 16 1.44e-05 CATCCCGGGA CACACACA CACATGTCGA chrIV:17215198-17215278 12 1.44e-05 AAAAAAAAAT CACACACA CGCACAAAAG chrI:7130921-7131001 32 4.76e-05 TCTGTGCTTC TACACACA ATCACTTATA chrV:11308091-11308171 51 4.76e-05 TTATAGACAA CACACAAA ATGAGTATTG chrIII:6744618-6744698 37 4.76e-05 TTCGGACTCT CACACAAA TTTTGTGGTG chrX:3689534-3689614 57 6.06e-05 ATAATGAGTA CGCACACA GCAGTGCACA chrX:5592656-5592736 36 7.97e-05 TTTCATTCTT TACACAAA ATGCAATGGC chrX:8053093-8053173 41 7.97e-05 TTCGGAGCGT TACACAAA AATCGGCGCC chrIV:5507916-5507996 67 9.48e-05 ATAAGATACG CAGACACA TCCACA chrX:9564111-9564191 67 1.41e-04 AGGATCGCTT CGCACAAA ATCTTA chrII:580301-580381 65 1.41e-04 TCACGGTGTT TGCACACA ATTCCTTT chrIII:3927581-3927661 45 1.41e-04 TTCTTTAAAC TGCACACA TTCCCGCCAA chrIII:9987006-9987086 49 1.41e-04 CCTTGTCAGG TGCACACA TTGAGAAGCT chrIII:7545354-7545434 46 1.41e-04 GGATTGTGGG CACACATA TAGACACCAC chrI:14865022-14865102 50 1.76e-04 CCTAGAGACC CAGACAAA AGTAACAACT chrX:3854029-3854109 34 1.76e-04 TATAGAAAAA CAGACAAA TGACCGGACC chrX:4279354-4279434 23 2.12e-04 CGATGAGTGT TACACATA TCGCTGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:433703-433783 1.4e-05 37_[+5]_35 chrV:9295805-9295885 1.4e-05 56_[+5]_16 chrV:2803414-2803494 1.4e-05 33_[+5]_39 chrIII:5565892-5565972 1.4e-05 8_[+5]_64 chrV:12234730-12234810 1.4e-05 26_[+5]_46 chrX:9832537-9832617 1.4e-05 1_[+5]_71 chrX:3456788-3456868 1.4e-05 15_[+5]_57 chrIV:17215198-17215278 1.4e-05 11_[+5]_61 chrI:7130921-7131001 4.8e-05 31_[+5]_41 chrV:11308091-11308171 4.8e-05 50_[+5]_22 chrIII:6744618-6744698 4.8e-05 36_[+5]_36 chrX:3689534-3689614 6.1e-05 56_[+5]_16 chrX:5592656-5592736 8e-05 35_[+5]_37 chrX:8053093-8053173 8e-05 40_[+5]_32 chrIV:5507916-5507996 9.5e-05 66_[+5]_6 chrX:9564111-9564191 0.00014 66_[+5]_6 chrII:580301-580381 0.00014 64_[+5]_8 chrIII:3927581-3927661 0.00014 44_[+5]_28 chrIII:9987006-9987086 0.00014 48_[+5]_24 chrIII:7545354-7545434 0.00014 45_[+5]_27 chrI:14865022-14865102 0.00018 49_[+5]_23 chrX:3854029-3854109 0.00018 33_[+5]_39 chrX:4279354-4279434 0.00021 22_[+5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACAMA width=8 seqs=23 chrI:433703-433783 ( 38) CACACACA 1 chrV:9295805-9295885 ( 57) CACACACA 1 chrV:2803414-2803494 ( 34) CACACACA 1 chrIII:5565892-5565972 ( 9) CACACACA 1 chrV:12234730-12234810 ( 27) CACACACA 1 chrX:9832537-9832617 ( 2) CACACACA 1 chrX:3456788-3456868 ( 16) CACACACA 1 chrIV:17215198-17215278 ( 12) CACACACA 1 chrI:7130921-7131001 ( 32) TACACACA 1 chrV:11308091-11308171 ( 51) CACACAAA 1 chrIII:6744618-6744698 ( 37) CACACAAA 1 chrX:3689534-3689614 ( 57) CGCACACA 1 chrX:5592656-5592736 ( 36) TACACAAA 1 chrX:8053093-8053173 ( 41) TACACAAA 1 chrIV:5507916-5507996 ( 67) CAGACACA 1 chrX:9564111-9564191 ( 67) CGCACAAA 1 chrII:580301-580381 ( 65) TGCACACA 1 chrIII:3927581-3927661 ( 45) TGCACACA 1 chrIII:9987006-9987086 ( 49) TGCACACA 1 chrIII:7545354-7545434 ( 46) CACACATA 1 chrI:14865022-14865102 ( 50) CAGACAAA 1 chrX:3854029-3854109 ( 34) CAGACAAA 1 chrX:4279354-4279434 ( 23) TACACATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 3.2e+003 -1117 160 -1117 22 155 -1117 -15 -1117 -1117 192 -88 -1117 190 -1117 -1117 -1117 -1117 212 -1117 -1117 190 -1117 -1117 -1117 18 140 -1117 -159 190 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 3.2e+003 0.000000 0.695652 0.000000 0.304348 0.782609 0.000000 0.217391 0.000000 0.000000 0.869565 0.130435 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.304348 0.608696 0.000000 0.086957 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-5 regular expression -------------------------------------------------------------------------------- [CT][AG]CACA[CA]A -------------------------------------------------------------------------------- Time 23.42 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8461308-8461388 1.23e-01 80 chrII:6936709-6936789 1.51e-01 80 chrI:6893322-6893402 8.06e-02 80 chrV:9112090-9112170 1.80e-02 8_[+1(2.77e-05)]_64 chrII:8117598-8117678 6.61e-01 80 chrI:7029955-7030035 1.28e-02 57_[+1(8.36e-05)]_15 chrII:2728614-2728694 9.42e-01 80 chrI:6770063-6770143 6.25e-01 80 chrIV:2613268-2613348 3.40e-01 80 chrIV:379051-379131 1.04e-04 15_[+3(6.07e-05)]_38_[+4(4.39e-05)]_\ 11 chrX:2950407-2950487 1.05e-02 53_[+3(6.07e-05)]_19 chrIV:4639536-4639616 4.48e-01 80 chrX:10410770-10410850 2.57e-03 48_[+4(1.57e-05)]_24 chrIII:7545354-7545434 4.42e-02 80 chrI:5015809-5015889 9.93e-03 80 chrIII:9987006-9987086 2.63e-01 80 chrX:9735642-9735722 1.41e-01 80 chrIV:17215198-17215278 2.05e-04 11_[+5(1.44e-05)]_29_[+4(5.88e-05)]_\ 24 chrX:8052202-8052282 2.65e-01 4_[+4(7.63e-05)]_[+4(7.63e-05)]_60 chrV:8667392-8667472 2.18e-01 80 chrI:6616082-6616162 6.92e-01 80 chrV:6202713-6202793 1.59e-01 80 chrI:8459070-8459150 5.14e-02 80 chrI:5072361-5072441 1.43e-04 39_[+1(2.77e-05)]_12_[+4(1.57e-05)]_\ 13 chrIV:7426276-7426356 6.61e-03 80 chrII:6170375-6170455 4.65e-03 4_[+1(5.22e-05)]_68 chrII:4805986-4806066 5.30e-02 80 chrII:11595703-11595783 4.14e-01 80 chrX:3456788-3456868 7.00e-03 15_[+5(1.44e-05)]_57 chrX:9832537-9832617 1.80e-03 1_[+5(1.44e-05)]_71 chrIII:5648472-5648552 1.33e-01 80 chrIII:3200711-3200791 2.06e-02 80 chrI:4516214-4516294 6.52e-03 35_[+2(1.94e-05)]_37 chrIV:11572682-11572762 3.67e-02 80 chrX:8054596-8054676 3.90e-01 80 chrI:611817-611897 3.26e-01 80 chrV:11307888-11307968 7.37e-01 80 chrIII:5931550-5931630 3.94e-01 80 chrII:7722909-7722989 3.18e-04 42_[+2(1.94e-05)]_30 chrI:5777393-5777473 9.22e-03 80 chrIII:8022258-8022338 9.28e-02 80 chrX:6299836-6299916 1.07e-01 18_[+1(8.36e-05)]_54 chrII:4516445-4516525 2.09e-01 80 chrI:1304068-1304148 1.41e-01 80 chrX:11463685-11463765 9.65e-01 80 chrII:4520139-4520219 2.03e-01 80 chrX:16536428-16536508 7.15e-03 14_[+1(5.22e-05)]_3_[+3(4.60e-05)]_\ 6_[+1(5.22e-05)]_33 chrIV:10048351-10048431 1.45e-01 80 chrX:6509911-6509991 6.61e-01 80 chrV:17539426-17539506 6.11e-01 80 chrX:7661328-7661408 8.41e-03 29_[+1(2.77e-05)]_43 chrIV:9735056-9735136 4.00e-01 80 chrIII:5898725-5898805 5.21e-01 80 chrIV:9080286-9080366 4.99e-01 80 chrX:8057949-8058029 4.21e-01 80 chrIII:5486457-5486537 6.76e-02 17_[+3(8.67e-05)]_55 chrI:6236065-6236145 3.63e-04 [+3(1.30e-05)]_72 chrI:11559358-11559438 7.77e-02 1_[+4(1.57e-05)]_71 chrIV:4506762-4506842 6.29e-04 11_[+1(5.22e-05)]_61 chrIV:6135761-6135841 2.71e-02 80 chrX:16812085-16812165 6.64e-01 80 chrIII:3927581-3927661 4.43e-02 80 chrV:4157483-4157563 4.24e-01 80 chrI:7385328-7385408 7.01e-03 21_[+3(6.07e-05)]_51 chrX:16534621-16534701 1.38e-01 63_[+2(7.57e-05)]_9 chrI:8457227-8457307 5.94e-01 80 chrIV:13561638-13561718 7.53e-03 6_[+3(6.07e-05)]_66 chrX:14054945-14055025 5.40e-03 40_[+2(3.68e-05)]_32 chrI:12008244-12008324 8.40e-02 80 chrX:6597237-6597317 1.80e-03 6_[+3(3.59e-05)]_66 chrIV:4643722-4643802 2.51e-04 17_[+1(2.77e-05)]_22_[+4(7.63e-05)]_\ 25 chrX:8789200-8789280 3.96e-01 80 chrX:16525768-16525848 3.89e-03 23_[+3(1.30e-05)]_49 chrI:3891613-3891693 1.85e-02 63_[+2(7.57e-05)]_9 chrII:2726926-2727006 2.60e-02 10_[+4(1.57e-05)]_62 chrIII:6742724-6742804 9.49e-02 80 chrIII:1943655-1943735 1.43e-02 43_[+4(1.57e-05)]_[+4(1.57e-05)]_21 chrX:4965788-4965868 2.55e-01 80 chrV:6930532-6930612 4.28e-01 80 chrI:9199341-9199421 1.23e-01 80 chrI:14245273-14245353 1.66e-03 31_[+1(5.22e-05)]_41 chrX:13638496-13638576 3.21e-01 80 chrX:13873498-13873578 3.03e-03 80 chrIII:5931752-5931832 5.06e-01 80 chrI:8459272-8459352 1.42e-02 27_[+4(1.57e-05)]_45 chrII:5841297-5841377 5.48e-01 80 chrI:3405840-3405920 2.48e-02 32_[+3(4.60e-05)]_40 chrV:10010989-10011069 7.31e-02 80 chrI:1069297-1069377 8.40e-02 80 chrV:6751831-6751911 2.26e-01 35_[+2(7.57e-05)]_37 chrX:3854029-3854109 5.75e-02 80 chrX:11560227-11560307 1.63e-01 80 chrV:265753-265833 7.62e-01 80 chrX:11821288-11821368 2.68e-01 80 chrII:10025236-10025316 4.09e-01 80 chrII:1848265-1848345 3.02e-01 80 chrII:13056751-13056831 8.62e-02 80 chrV:12234730-12234810 9.00e-03 26_[+5(1.44e-05)]_46 chrII:8783609-8783689 4.98e-01 80 chrI:4046793-4046873 1.46e-02 80 chrV:12897026-12897106 2.78e-01 80 chrX:3689534-3689614 3.77e-02 56_[+5(6.06e-05)]_16 chrII:580301-580381 2.18e-03 38_[+4(5.88e-05)]_34 chrX:16389415-16389495 1.86e-02 3_[+2(1.94e-05)]_[+2(3.68e-05)]_61 chrX:3900851-3900931 4.26e-01 80 chrII:10558488-10558568 2.84e-01 80 chrI:9188065-9188145 4.59e-03 28_[+1(2.77e-05)]_44 chrII:6181531-6181611 7.36e-03 11_[+3(3.59e-05)]_61 chrX:15014097-15014177 1.95e-02 10_[+3(4.60e-05)]_62 chrV:14153805-14153885 3.94e-03 80 chrI:6769126-6769206 1.34e-03 20_[+3(6.07e-05)]_52 chrI:10590656-10590736 2.70e-02 80 chrII:4518455-4518535 9.87e-01 80 chrIII:13616966-13617046 1.34e-04 69_[+1(2.77e-05)]_3 chrII:8105195-8105275 1.18e-01 80 chrIII:9744656-9744736 3.80e-02 61_[+4(1.57e-05)]_11 chrV:11074622-11074702 1.03e-01 80 chrX:15943185-15943265 1.51e-01 70_[+2(7.57e-05)]_2 chrV:6767693-6767773 9.42e-01 80 chrX:493099-493179 4.64e-02 22_[+1(5.22e-05)]_50 chrX:14292780-14292860 3.33e-03 5_[+3(6.07e-05)]_4_[+3(6.07e-05)]_\ 55 chrIII:5565892-5565972 8.57e-03 8_[+5(1.44e-05)]_2_[+5(1.44e-05)]_\ 54 chrX:14684543-14684623 2.88e-01 80 chrV:11958574-11958654 4.04e-02 80 chrV:12517979-12518059 3.41e-02 50_[+2(1.94e-05)]_22 chrX:17459057-17459137 7.09e-01 80 chrX:4279354-4279434 3.84e-01 80 chrIV:1107351-1107431 4.21e-02 47_[+4(5.88e-05)]_25 chrX:14287950-14288030 4.61e-01 80 chrI:10491062-10491142 2.36e-02 52_[+3(3.59e-05)]_20 chrIII:3914978-3915058 1.20e-01 80 chrV:2803414-2803494 3.33e-04 29_[+5(1.44e-05)]_43 chrIII:8815895-8815975 1.26e-02 60_[+3(6.07e-05)]_12 chrIII:2754079-2754159 1.01e-01 62_[+2(3.68e-05)]_10 chrX:16655390-16655470 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11_[+1(8.36e-05)]_61 chrV:9295805-9295885 3.23e-03 50_[+5(1.44e-05)]_[+5(1.44e-05)]_14 chrX:9564111-9564191 1.29e-01 80 chrI:10262248-10262328 6.97e-01 80 chrII:4038819-4038899 1.07e-02 32_[+1(5.22e-05)]_40 chrII:7909358-7909438 2.61e-01 80 chrIV:12615494-12615574 1.92e-02 49_[+2(3.68e-05)]_2_[+2(3.68e-05)]_\ [+2(3.68e-05)]_5 chrX:11574401-11574481 2.76e-02 80 chrII:8499222-8499302 3.14e-01 80 chrI:7028277-7028357 2.22e-02 80 chrI:3988728-3988808 7.98e-01 80 chrV:11677676-11677756 7.90e-02 80 chrX:1082135-1082215 2.25e-01 80 chrX:14728029-14728109 8.64e-01 80 chrI:14863574-14863654 3.55e-03 40_[+4(2.94e-05)]_32 chrI:4020700-4020780 9.06e-04 70_[+1(2.77e-05)]_2 chrIV:5136580-5136660 4.06e-02 23_[+4(1.57e-05)]_49 chrIV:5820214-5820294 2.63e-01 80 chrV:12697543-12697623 2.56e-01 80 chrIV:5507916-5507996 1.09e-01 66_[+5(9.48e-05)]_6 chrI:9739509-9739589 6.80e-02 15_[+1(2.77e-05)]_57 chrX:11035727-11035807 8.94e-03 60_[+4(9.12e-05)]_12 chrI:10105487-10105567 8.65e-04 6_[+1(2.77e-05)]_66 chrI:5690190-5690270 5.51e-01 80 chrV:14909480-14909560 2.32e-02 15_[+1(8.36e-05)]_57 chrIV:7098703-7098783 3.65e-01 80 chrIV:11571748-11571828 5.55e-01 80 chrI:7948192-7948272 6.85e-04 35_[+2(7.57e-05)]_23_[+1(2.77e-05)]_\ 6 chrIV:8850922-8851002 4.52e-02 80 chrV:8332345-8332425 1.86e-02 45_[+3(1.30e-05)]_27 chrI:11554608-11554688 1.31e-02 14_[+2(7.57e-05)]_58 chrV:12233618-12233698 7.45e-01 80 chrV:284933-285013 5.51e-01 80 chrIV:4027239-4027319 6.58e-01 80 chrV:6768738-6768818 3.40e-03 49_[+1(5.22e-05)]_23 chrX:3861429-3861509 1.49e-01 80 chrIII:9859340-9859420 3.21e-01 80 chrV:14871490-14871570 5.44e-02 80 chrII:8769530-8769610 1.55e-01 38_[+3(4.60e-05)]_34 chrIV:607795-607875 6.99e-02 80 chrI:10840031-10840111 7.75e-02 72_[+3(8.67e-05)] chrII:6545170-6545250 5.70e-01 80 chrX:14653668-14653748 1.08e-02 14_[+2(7.57e-05)]_58 chrX:1096934-1097014 1.13e-02 23_[+3(4.60e-05)]_49 chrX:16392325-16392405 1.19e-01 80 chrX:10176506-10176586 3.82e-01 80 chrX:1054110-1054190 3.04e-01 80 chrX:7573749-7573829 3.45e-03 80 chrIV:7429053-7429133 1.72e-01 80 chrIII:3782905-3782985 6.55e-03 18_[+2(3.68e-05)]_54 chrIV:282131-282211 1.65e-03 16_[+4(1.57e-05)]_56 chrV:18581885-18581965 4.46e-01 80 chrII:9764712-9764792 6.39e-01 80 chrI:433703-433783 8.63e-04 31_[+5(1.44e-05)]_[+5(1.44e-05)]_33 chrX:5195610-5195690 8.01e-01 80 chrI:5020200-5020280 4.75e-01 80 chrX:1080676-1080756 9.54e-02 46_[+2(1.94e-05)]_26 chrI:14533010-14533090 6.07e-05 49_[+1(2.77e-05)]_23 chrI:2861150-2861230 2.01e-02 80 chrIII:3583454-3583534 1.82e-02 80 chrII:7755302-7755382 2.99e-01 80 chrII:1208762-1208842 1.54e-02 34_[+2(1.94e-05)]_38 chrX:17667397-17667477 4.51e-01 80 chrV:11034901-11034981 3.01e-02 9_[+1(5.22e-05)]_63 chrV:20451953-20452033 5.05e-01 80 chrX:8053093-8053173 2.74e-04 40_[+5(7.97e-05)]_21_[+1(2.77e-05)]_\ 3 chrX:6224985-6225065 3.66e-02 39_[+1(2.77e-05)]_33 chrIV:3168967-3169047 7.33e-02 22_[+2(3.68e-05)]_[+2(1.94e-05)]_42 chrI:9955975-9956055 1.61e-02 4_[+3(4.60e-05)]_68 chrIV:12012534-12012614 3.00e-01 80 chrV:11073501-11073581 1.36e-01 80 chrV:9247624-9247704 6.52e-01 80 chrIII:952382-952462 5.21e-01 80 chrV:7822774-7822854 1.89e-02 80 chrIII:3396283-3396363 5.61e-01 80 chrIV:12637523-12637603 3.26e-01 80 chrIV:11710516-11710596 4.18e-02 80 chrV:14625802-14625882 2.47e-01 80 chrII:1529-1609 3.29e-01 80 chrV:11308091-11308171 1.96e-02 50_[+5(4.76e-05)]_22 chrX:14054215-14054295 1.63e-02 15_[+1(5.22e-05)]_57 chrIV:5986912-5986992 1.41e-01 80 chrX:5592656-5592736 2.77e-03 35_[+5(7.97e-05)]_37 chrII:161424-161504 4.21e-03 80 chrII:6482209-6482289 1.04e-01 80 chrX:3959351-3959431 6.52e-01 80 chrI:7130921-7131001 8.66e-04 31_[+5(4.76e-05)]_41 chrIII:5572977-5573057 1.23e-01 80 chrIII:2426216-2426296 1.35e-01 80 chrI:14865022-14865102 5.51e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************