******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ttx-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:11766415-11766495 1.0000 80 chrII:2570635-2570715 1.0000 80 chrII:6391962-6392042 1.0000 80 chrII:10373915-10373995 1.0000 80 chrIV:11868011-11868091 1.0000 80 chrIII:12615116-12615196 1.0000 80 chrIV:5371095-5371175 1.0000 80 chrI:4973275-4973355 1.0000 80 chrX:15347862-15347942 1.0000 80 chrV:265223-265303 1.0000 80 chrII:5399352-5399432 1.0000 80 chrV:16622056-16622136 1.0000 80 chrI:14708107-14708187 1.0000 80 chrM:10801-10881 1.0000 80 chrV:20832692-20832772 1.0000 80 chrIII:3499973-3500053 1.0000 80 chrIV:14013787-14013867 1.0000 80 chrII:10284922-10285002 1.0000 80 chrIII:13293107-13293187 1.0000 80 chrI:1836533-1836613 1.0000 80 chrIV:11605046-11605126 1.0000 80 chrIII:13781114-13781194 1.0000 80 chrV:265753-265833 1.0000 80 chrIV:11872113-11872193 1.0000 80 chrX:8156109-8156189 1.0000 80 chrX:12693460-12693540 1.0000 80 chrM:7940-8020 1.0000 80 chrII:5956236-5956316 1.0000 80 chrI:788123-788203 1.0000 80 chrX:9296762-9296842 1.0000 80 chrV:3587794-3587874 1.0000 80 chrV:1383702-1383782 1.0000 80 chrII:10990769-10990849 1.0000 80 chrV:2697812-2697892 1.0000 80 chrIII:8098776-8098856 1.0000 80 chrX:12688672-12688752 1.0000 80 chrIV:1981122-1981202 1.0000 80 chrIV:9316171-9316251 1.0000 80 chrX:3914419-3914499 1.0000 80 chrV:14524372-14524452 1.0000 80 chrI:9249346-9249426 1.0000 80 chrV:13176523-13176603 1.0000 80 chrX:4617095-4617175 1.0000 80 chrX:8944276-8944356 1.0000 80 chrIV:1687250-1687330 1.0000 80 chrI:13421146-13421226 1.0000 80 chrIV:15289645-15289725 1.0000 80 chrIV:13549486-13549566 1.0000 80 chrI:449506-449586 1.0000 80 chrIII:3476324-3476404 1.0000 80 chrM:7091-7171 1.0000 80 chrX:14513575-14513655 1.0000 80 chrI:12004907-12004987 1.0000 80 chrII:4238070-4238150 1.0000 80 chrIV:16863649-16863729 1.0000 80 chrII:8325309-8325389 1.0000 80 chrI:4176016-4176096 1.0000 80 chrIV:5354312-5354392 1.0000 80 chrI:933476-933556 1.0000 80 chrIV:14576649-14576729 1.0000 80 chrIII:11236933-11237013 1.0000 80 chrI:15052709-15052789 1.0000 80 chrI:12065889-12065969 1.0000 80 chrI:1175813-1175893 1.0000 80 chrIV:5809851-5809931 1.0000 80 chrV:11933380-11933460 1.0000 80 chrI:6532102-6532182 1.0000 80 chrIV:385241-385321 1.0000 80 chrV:7231024-7231104 1.0000 80 chrIII:3664398-3664478 1.0000 80 chrII:6835678-6835758 1.0000 80 chrM:4602-4682 1.0000 80 chrIII:10432245-10432325 1.0000 80 chrIV:5038884-5038964 1.0000 80 chrIV:14077034-14077114 1.0000 80 chrX:9078297-9078377 1.0000 80 chrM:2156-2236 1.0000 80 chrI:4603056-4603136 1.0000 80 chrII:6565264-6565344 1.0000 80 chrV:16553090-16553170 1.0000 80 chrII:3553544-3553624 1.0000 80 chrX:8638986-8639066 1.0000 80 chrI:14606045-14606125 1.0000 80 chrIII:5692778-5692858 1.0000 80 chrIII:11091767-11091847 1.0000 80 chrI:10161943-10162023 1.0000 80 chrI:1280236-1280316 1.0000 80 chrI:8530141-8530221 1.0000 80 chrIII:12616222-12616302 1.0000 80 chrII:2794570-2794650 1.0000 80 chrI:3873916-3873996 1.0000 80 chrX:13739270-13739350 1.0000 80 chrII:8716501-8716581 1.0000 80 chrI:586693-586773 1.0000 80 chrI:1575663-1575743 1.0000 80 chrV:14130491-14130571 1.0000 80 chrIII:4542535-4542615 1.0000 80 chrIII:10396875-10396955 1.0000 80 chrX:17181390-17181470 1.0000 80 chrX:2920528-2920608 1.0000 80 chrI:4132214-4132294 1.0000 80 chrM:9467-9547 1.0000 80 chrX:10616166-10616246 1.0000 80 chrV:178251-178331 1.0000 80 chrIII:1824677-1824757 1.0000 80 chrII:14635364-14635444 1.0000 80 chrI:7015706-7015786 1.0000 80 chrX:13415134-13415214 1.0000 80 chrX:4307573-4307653 1.0000 80 chrI:6136621-6136701 1.0000 80 chrV:9583087-9583167 1.0000 80 chrV:18832809-18832889 1.0000 80 chrIII:9465606-9465686 1.0000 80 chrV:1821429-1821509 1.0000 80 chrIV:5334687-5334767 1.0000 80 chrIV:5854529-5854609 1.0000 80 chrIII:3175107-3175187 1.0000 80 chrII:3959945-3960025 1.0000 80 chrIII:7030548-7030628 1.0000 80 chrV:11641498-11641578 1.0000 80 chrV:19723018-19723098 1.0000 80 chrX:9024454-9024534 1.0000 80 chrX:12890320-12890400 1.0000 80 chrX:11753456-11753536 1.0000 80 chrIV:14032830-14032910 1.0000 80 chrII:12042384-12042464 1.0000 80 chrII:4791449-4791529 1.0000 80 chrII:8964924-8965004 1.0000 80 chrV:2672768-2672848 1.0000 80 chrX:12337954-12338034 1.0000 80 chrI:9512154-9512234 1.0000 80 chrV:11852588-11852668 1.0000 80 chrI:6724436-6724516 1.0000 80 chrII:5691504-5691584 1.0000 80 chrIV:16684413-16684493 1.0000 80 chrI:2485593-2485673 1.0000 80 chrV:311659-311739 1.0000 80 chrII:3482354-3482434 1.0000 80 chrX:6613739-6613819 1.0000 80 chrI:323673-323753 1.0000 80 chrIII:12368630-12368710 1.0000 80 chrM:3557-3637 1.0000 80 chrI:10400650-10400730 1.0000 80 chrIII:1218317-1218397 1.0000 80 chrIV:3521872-3521952 1.0000 80 chrV:11337395-11337475 1.0000 80 chrIV:2639827-2639907 1.0000 80 chrIII:8650432-8650512 1.0000 80 chrI:4633653-4633733 1.0000 80 chrV:10717003-10717083 1.0000 80 chrIV:3763600-3763680 1.0000 80 chrII:3808233-3808313 1.0000 80 chrIII:13225214-13225294 1.0000 80 chrII:7001603-7001683 1.0000 80 chrIII:13293313-13293393 1.0000 80 chrII:7708739-7708819 1.0000 80 chrI:7224527-7224607 1.0000 80 chrII:6741569-6741649 1.0000 80 chrIV:4745525-4745605 1.0000 80 chrIII:11825751-11825831 1.0000 80 chrIV:4510949-4511029 1.0000 80 chrM:1196-1276 1.0000 80 chrIII:6805546-6805626 1.0000 80 chrIV:13289562-13289642 1.0000 80 chrI:4967607-4967687 1.0000 80 chrI:1415957-1416037 1.0000 80 chrX:12367604-12367684 1.0000 80 chrI:788322-788402 1.0000 80 chrIII:12613739-12613819 1.0000 80 chrX:13145034-13145114 1.0000 80 chrX:14115636-14115716 1.0000 80 chrV:11239347-11239427 1.0000 80 chrV:15553968-15554048 1.0000 80 chrM:12382-12462 1.0000 80 chrV:8631514-8631594 1.0000 80 chrX:3994611-3994691 1.0000 80 chrIII:4587372-4587452 1.0000 80 chrIII:8768066-8768146 1.0000 80 chrI:4367921-4368001 1.0000 80 chrIV:16946933-16947013 1.0000 80 chrM:9239-9319 1.0000 80 chrV:6709187-6709267 1.0000 80 chrI:7715563-7715643 1.0000 80 chrIII:9868231-9868311 1.0000 80 chrII:4130216-4130296 1.0000 80 chrIII:4426777-4426857 1.0000 80 chrX:16928284-16928364 1.0000 80 chrIII:931609-931689 1.0000 80 chrV:2673980-2674060 1.0000 80 chrIII:1202269-1202349 1.0000 80 chrII:2570836-2570916 1.0000 80 chrX:5686262-5686342 1.0000 80 chrIII:3916770-3916850 1.0000 80 chrI:10474763-10474843 1.0000 80 chrX:5056376-5056456 1.0000 80 chrIII:12399898-12399978 1.0000 80 chrIII:1037316-1037396 1.0000 80 chrX:10435750-10435830 1.0000 80 chrIII:8417326-8417406 1.0000 80 chrI:636818-636898 1.0000 80 chrX:8386156-8386236 1.0000 80 chrIV:16776036-16776116 1.0000 80 chrI:3176557-3176637 1.0000 80 chrIV:796715-796795 1.0000 80 chrI:11579749-11579829 1.0000 80 chrIII:535390-535470 1.0000 80 chrIV:5974350-5974430 1.0000 80 chrI:11505494-11505574 1.0000 80 chrI:9373017-9373097 1.0000 80 chrIII:7181947-7182027 1.0000 80 chrIV:3213559-3213639 1.0000 80 chrI:14651738-14651818 1.0000 80 chrV:13962155-13962235 1.0000 80 chrI:9268954-9269034 1.0000 80 chrX:8646475-8646555 1.0000 80 chrV:4731536-4731616 1.0000 80 chrIV:13777671-13777751 1.0000 80 chrII:2565045-2565125 1.0000 80 chrII:8128878-8128958 1.0000 80 chrI:1823158-1823238 1.0000 80 chrIII:640566-640646 1.0000 80 chrX:5244215-5244295 1.0000 80 chrIV:620497-620577 1.0000 80 chrII:14143954-14144034 1.0000 80 chrIV:16865716-16865796 1.0000 80 chrII:11959360-11959440 1.0000 80 chrX:14804814-14804894 1.0000 80 chrI:6215547-6215627 1.0000 80 chrI:5608933-5609013 1.0000 80 chrV:1003953-1004033 1.0000 80 chrX:9622808-9622888 1.0000 80 chrIV:12268660-12268740 1.0000 80 chrIV:393539-393619 1.0000 80 chrIV:7947062-7947142 1.0000 80 chrIV:2033174-2033254 1.0000 80 chrI:7094972-7095052 1.0000 80 chrIV:1388267-1388347 1.0000 80 chrI:6091083-6091163 1.0000 80 chrIV:11310756-11310836 1.0000 80 chrX:13598035-13598115 1.0000 80 chrII:6898221-6898301 1.0000 80 chrI:488367-488447 1.0000 80 chrIII:3540576-3540656 1.0000 80 chrX:3348106-3348186 1.0000 80 chrI:853258-853338 1.0000 80 chrI:14721583-14721663 1.0000 80 chrX:1858758-1858838 1.0000 80 chrM:4804-4884 1.0000 80 chrX:16604714-16604794 1.0000 80 chrIII:12218862-12218942 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ttx-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ttx-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.227 G 0.223 T 0.278 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.227 G 0.223 T 0.278 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GKGCGGCG MEME-1 width = 8 sites = 44 llr = 382 E-value = 2.3e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGCGGCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1::22 pos.-specific C :2:91:7: probability G a5a:9a28 matrix T :4:::::: bits 2.2 * 2.0 * * * 1.7 * **** 1.5 * **** Relative 1.3 * **** * Entropy 1.1 * **** * (12.5 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGCG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGGCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11579749-11579829 26 6.34e-06 TGAGCTAACC GGGCGGCG ATCACAGTTA chrIV:14032830-14032910 23 6.34e-06 CGTAAACGTC GGGCGGCG TATGTGCCCT chrIII:3916770-3916850 40 1.42e-05 CCTAAAGTGT GTGCGGCG ACTTTGCAAA chrIII:8768066-8768146 17 1.42e-05 TGAGTAAACT GTGCGGCG TGTTTGCGGA chrX:6613739-6613819 6 1.42e-05 AGAGT GTGCGGCG GTCTCTCGTG chrIII:1824677-1824757 24 1.42e-05 ACTAAACCCC GTGCGGCG CTCTTGCAAA chrI:3873916-3873996 26 1.42e-05 CATGACTTTC gtgcggcg agattgcgaa chrIII:11236933-11237013 15 1.42e-05 GGAAAAAAGT GTGCGGCG GCATTGCCTG chrII:4238070-4238150 33 1.42e-05 GCGAAAATGC GTGCGGCG CGTTGCAACT chrIV:9316171-9316251 51 1.42e-05 GAATAAAACC GTGCGGCG GAATTGCGAA chrIV:11310756-11310836 39 2.07e-05 GAGGAAAAGT GCGCGGCG GGCTTGCAGA chrIII:4542535-4542615 14 2.07e-05 TAGAAAAAAT GCGCGGCG TGCTTGCAAT chrIV:1981122-1981202 9 2.07e-05 ATGAAACT GCGCGGCG GGCTTGCGTG chrV:2697812-2697892 63 2.07e-05 CAAAAAAACA GCGCGGCG GAGTTGCGAA chrV:13962155-13962235 72 3.45e-05 CTGCAAAAAA GGGCGGAG C chrI:14651738-14651818 37 3.45e-05 ACACTTTTGT GGGCGGGG CTTAGCCAAT chrIII:8417326-8417406 27 3.45e-05 GAGATAAAAT GGGCGGAG TCAACGAATA chrIV:16946933-16947013 32 3.45e-05 TTGCAAAACT GGGCGGAG CCACGCGGAA chrV:8631514-8631594 23 3.45e-05 GTCAGCTGAT GGGCGGAG TTCATTGTGT chrII:3808233-3808313 33 3.45e-05 AAAATGTGTT GGGCGGGG CTTCGTAAAT chrIV:16863649-16863729 9 3.45e-05 GGTTCTAT GGGCGGAG TTTAGCGAAC chrIII:3476324-3476404 20 3.45e-05 CGAAAAAATG GGGCGGAG TTAAGGTGAG chrV:13176523-13176603 47 3.45e-05 GGTTGCAAAG GGGCGGAG CTATGTTTCA chrI:9249346-9249426 55 3.45e-05 ACGGAAAAGA GGGCGGGG TTGAGACTCC chrIV:11605046-11605126 28 3.45e-05 TGGTTCTGGT GGGCGGAG TCTCCTTCCC chrIV:3763600-3763680 64 4.23e-05 CACCTGTGTC GGGCGGCA AGGGGCATG chrV:4731536-4731616 43 5.96e-05 TAGCCATTCT GTGCGGGG ACATTGCAAA chrIV:16865716-16865796 1 6.92e-05 . GTGCGGCA CAATTGCGTG chrIII:3175107-3175187 54 6.92e-05 TCTTAACTCT GTGCGGCA CCATTGCGGA chrI:1175813-1175893 43 6.92e-05 CATAAACTCC GTGCGGCA CACTTGCAAA chrII:5399352-5399432 18 6.92e-05 GCTGCACACT GTGCGGCA CAATTGCGAA chrX:12367604-12367684 61 8.98e-05 AATCGAACCC GGGCCGCG TGGGTGAAAA chrIV:2639827-2639907 5 8.98e-05 AACC GGGCCGCG TGGGTGAAAA chrI:2485593-2485673 28 8.98e-05 cgattattct gcgcgggg gtacggtacg chrV:1821429-1821509 26 9.77e-05 CACATGCAAG GCGCGGCA CGCGTTTTCG chrI:14606045-14606125 14 9.77e-05 CTGGAAAAGT GCGCGGCA GACTTGCACC chrII:5691504-5691584 62 1.05e-04 GCAGGGTTTT GGGAGGCG GACCGTTCCC chrX:4617095-4617175 56 1.05e-04 TTGCATACAA GGGAGGCG ATCTGCCTAA chrIII:13781114-13781194 62 1.05e-04 cgactttaaa gggaggcg cttttatgcg chrIV:5371095-5371175 9 1.13e-04 GAAAACGC GTGCCGCG GAAAGGCAAC chrIV:1388267-1388347 59 1.61e-04 AGAGAAGAGT GTGCGGGA GGGGCCTGCT chrI:4367921-4368001 48 1.61e-04 CGCGTTTCTC GTGCGGGA GCCTTTTTGT chrII:8128878-8128958 21 1.80e-04 TGTTGAGCGG CGGCGGCG ACGGTGAAGG chrI:4633653-4633733 16 2.43e-04 CATCAATTGC GTGCGCCG TTTTTGCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGGCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11579749-11579829 6.3e-06 25_[+1]_47 chrIV:14032830-14032910 6.3e-06 22_[+1]_50 chrIII:3916770-3916850 1.4e-05 39_[+1]_33 chrIII:8768066-8768146 1.4e-05 16_[+1]_56 chrX:6613739-6613819 1.4e-05 5_[+1]_67 chrIII:1824677-1824757 1.4e-05 23_[+1]_49 chrI:3873916-3873996 1.4e-05 25_[+1]_47 chrIII:11236933-11237013 1.4e-05 14_[+1]_58 chrII:4238070-4238150 1.4e-05 32_[+1]_40 chrIV:9316171-9316251 1.4e-05 50_[+1]_22 chrIV:11310756-11310836 2.1e-05 38_[+1]_34 chrIII:4542535-4542615 2.1e-05 13_[+1]_59 chrIV:1981122-1981202 2.1e-05 8_[+1]_64 chrV:2697812-2697892 2.1e-05 62_[+1]_10 chrV:13962155-13962235 3.5e-05 71_[+1]_1 chrI:14651738-14651818 3.5e-05 36_[+1]_36 chrIII:8417326-8417406 3.5e-05 26_[+1]_46 chrIV:16946933-16947013 3.5e-05 31_[+1]_41 chrV:8631514-8631594 3.5e-05 22_[+1]_50 chrII:3808233-3808313 3.5e-05 32_[+1]_40 chrIV:16863649-16863729 3.5e-05 8_[+1]_64 chrIII:3476324-3476404 3.5e-05 19_[+1]_53 chrV:13176523-13176603 3.5e-05 46_[+1]_26 chrI:9249346-9249426 3.5e-05 54_[+1]_18 chrIV:11605046-11605126 3.5e-05 27_[+1]_45 chrIV:3763600-3763680 4.2e-05 63_[+1]_9 chrV:4731536-4731616 6e-05 42_[+1]_30 chrIV:16865716-16865796 6.9e-05 [+1]_72 chrIII:3175107-3175187 6.9e-05 53_[+1]_19 chrI:1175813-1175893 6.9e-05 42_[+1]_30 chrII:5399352-5399432 6.9e-05 17_[+1]_55 chrX:12367604-12367684 9e-05 60_[+1]_12 chrIV:2639827-2639907 9e-05 4_[+1]_68 chrI:2485593-2485673 9e-05 27_[+1]_45 chrV:1821429-1821509 9.8e-05 25_[+1]_47 chrI:14606045-14606125 9.8e-05 13_[+1]_59 chrII:5691504-5691584 0.00011 61_[+1]_11 chrX:4617095-4617175 0.00011 55_[+1]_17 chrIII:13781114-13781194 0.00011 61_[+1]_11 chrIV:5371095-5371175 0.00011 8_[+1]_64 chrIV:1388267-1388347 0.00016 58_[+1]_14 chrI:4367921-4368001 0.00016 47_[+1]_25 chrII:8128878-8128958 0.00018 20_[+1]_52 chrI:4633653-4633733 0.00024 15_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGGCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGCGGCG width=8 seqs=44 chrI:11579749-11579829 ( 26) GGGCGGCG 1 chrIV:14032830-14032910 ( 23) GGGCGGCG 1 chrIII:3916770-3916850 ( 40) GTGCGGCG 1 chrIII:8768066-8768146 ( 17) GTGCGGCG 1 chrX:6613739-6613819 ( 6) GTGCGGCG 1 chrIII:1824677-1824757 ( 24) GTGCGGCG 1 chrI:3873916-3873996 ( 26) GTGCGGCG 1 chrIII:11236933-11237013 ( 15) GTGCGGCG 1 chrII:4238070-4238150 ( 33) GTGCGGCG 1 chrIV:9316171-9316251 ( 51) GTGCGGCG 1 chrIV:11310756-11310836 ( 39) GCGCGGCG 1 chrIII:4542535-4542615 ( 14) GCGCGGCG 1 chrIV:1981122-1981202 ( 9) GCGCGGCG 1 chrV:2697812-2697892 ( 63) GCGCGGCG 1 chrV:13962155-13962235 ( 72) GGGCGGAG 1 chrI:14651738-14651818 ( 37) GGGCGGGG 1 chrIII:8417326-8417406 ( 27) GGGCGGAG 1 chrIV:16946933-16947013 ( 32) GGGCGGAG 1 chrV:8631514-8631594 ( 23) GGGCGGAG 1 chrII:3808233-3808313 ( 33) GGGCGGGG 1 chrIV:16863649-16863729 ( 9) GGGCGGAG 1 chrIII:3476324-3476404 ( 20) GGGCGGAG 1 chrV:13176523-13176603 ( 47) GGGCGGAG 1 chrI:9249346-9249426 ( 55) GGGCGGGG 1 chrIV:11605046-11605126 ( 28) GGGCGGAG 1 chrIV:3763600-3763680 ( 64) GGGCGGCA 1 chrV:4731536-4731616 ( 43) GTGCGGGG 1 chrIV:16865716-16865796 ( 1) GTGCGGCA 1 chrIII:3175107-3175187 ( 54) GTGCGGCA 1 chrI:1175813-1175893 ( 43) GTGCGGCA 1 chrII:5399352-5399432 ( 18) GTGCGGCA 1 chrX:12367604-12367684 ( 61) GGGCCGCG 1 chrIV:2639827-2639907 ( 5) GGGCCGCG 1 chrI:2485593-2485673 ( 28) GCGCGGGG 1 chrV:1821429-1821509 ( 26) GCGCGGCA 1 chrI:14606045-14606125 ( 14) GCGCGGCA 1 chrII:5691504-5691584 ( 62) GGGAGGCG 1 chrX:4617095-4617175 ( 56) GGGAGGCG 1 chrIII:13781114-13781194 ( 62) GGGAGGCG 1 chrIV:5371095-5371175 ( 9) GTGCCGCG 1 chrIV:1388267-1388347 ( 59) GTGCGGGA 1 chrI:4367921-4368001 ( 48) GTGCGGGA 1 chrII:8128878-8128958 ( 21) CGGCGGCG 1 chrI:4633653-4633733 ( 16) GTGCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGGCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 2.3e-019 -1210 -332 213 -1210 -1210 -51 103 47 -1210 -1210 217 -1210 -200 204 -1210 -1210 -1210 -173 207 -1210 -1210 -332 213 -1210 -58 154 -48 -1210 -41 -1210 184 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGGCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.3e-019 0.000000 0.022727 0.977273 0.000000 0.000000 0.159091 0.454545 0.386364 0.000000 0.000000 1.000000 0.000000 0.068182 0.931818 0.000000 0.000000 0.000000 0.068182 0.931818 0.000000 0.000000 0.022727 0.977273 0.000000 0.181818 0.659091 0.159091 0.000000 0.204545 0.000000 0.795455 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCGGCG MEME-1 regular expression -------------------------------------------------------------------------------- G[GT]GCGGC[GA] -------------------------------------------------------------------------------- Time 5.41 secs. ******************************************************************************** ******************************************************************************** MOTIF SCGCSCRC MEME-2 width = 8 sites = 34 llr = 310 E-value = 5.0e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGCSCRC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::2:6: pos.-specific C 6a:a3a:a probability G 3:a:5:4: matrix T 1::::::: bits 2.2 *** * * 2.0 *** * * 1.7 *** * * 1.5 *** * * Relative 1.3 *** * * Entropy 1.1 *** *** (13.2 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCGCAC consensus G C G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCSCRC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:636818-636898 16 8.18e-06 TAGTCCACGG CCGCGCAC GATTTACGGA chrV:9583087-9583167 20 8.18e-06 ACTTTGCAAG CCGCGCAC GCTATTTTGC chrV:7231024-7231104 12 8.18e-06 GTCGCAACCC CCGCGCAC TTTTTATGCA chrV:8631514-8631594 56 1.49e-05 TTTGCAACCA CCGCGCGC GTTTTTGCAA chrV:10717003-10717083 30 1.49e-05 GTCAACCCTC CCGCGCGC GCGAGAGCCC chrIII:3664398-3664478 23 1.49e-05 TTGCAACACG CCGCGCGC ATTTCGCAAC chrI:14708107-14708187 59 1.49e-05 TTTGCCATCC CCGCGCGC GCAGTGGGGA chrIII:8768066-8768146 73 2.32e-05 CGATTCAACT CCGCCCAC chrV:1821429-1821509 11 2.32e-05 ATACCCGACT CCGCCCAC ATGCAAGGCG chrII:8716501-8716581 68 2.32e-05 ATCAGAAACC CCGCCCAC AAAGC chrI:4603056-4603136 14 2.32e-05 ACCGAAGACT CCGCCCAC AGCTAATGGT chrIII:11236933-11237013 41 2.32e-05 TGCCTCCGCC CCGCCCAC ATTTCCGCGC chrII:4238070-4238150 56 2.32e-05 CAACTTAGCT CCGCCCAC CCTTTGAGGT chrI:9249346-9249426 71 2.32e-05 GGTTGAGACT CCGCCCAC CG chrIV:1981122-1981202 34 2.32e-05 GTGCGGCTCC CCGCCCAC TTTTCCGTGC chrII:7708739-7708819 17 3.12e-05 AATGCAATGC GCGCGCAC GGTTTTTGCA chrII:8325309-8325389 30 3.12e-05 AATTTGCAAT GCGCGCAC GCAGTTTTGC chrX:16928284-16928364 13 3.80e-05 cgaacccggg ccgcccgc gtggcaggcg chrI:14721583-14721663 38 4.46e-05 TTTGCAATGC GCGCGCGC GGTTTTCGCA chrX:5244215-5244295 24 4.46e-05 CCTCCCTCTT GCGCGCGC TGCGGGCTAA chrV:4731536-4731616 64 4.46e-05 TTGCAAAAAC GCGCGCGC GCATTGCAT chrIII:3916770-3916850 62 4.46e-05 TGCAAACACT GCGCGCGC AGCTTGCAAG chrV:6709187-6709267 55 4.46e-05 TCTGCAACGC GCGCGCGC GTTTTTCGCA chrIV:5371095-5371175 33 4.46e-05 CAACTCCGCG GCGCGCGC TTCCGCAACC chrIV:16863649-16863729 36 5.46e-05 CGCAATAGCG CCGCACAC TTTTTTGTTG chrV:14524372-14524452 46 5.46e-05 TGCAAACACG CCGCACAC ACTTACGACG chrX:9296762-9296842 42 5.46e-05 TGCCACTATG CCGCACAC AACTGGGTGA chrIV:11605046-11605126 60 5.46e-05 TGCAAGTGTG CCGCACAC AGTTTGTTCA chrI:1175813-1175893 67 6.28e-05 CAAAAACCGT GCGCCCAC CTTGCA chrI:1575663-1575743 10 8.75e-05 ACCCCCGCA GCGCACAC ACACACACAT chrI:7715563-7715643 56 9.75e-05 CCGTCCATCT TCGCGCAC ATGTTCAAAT chrIII:1824677-1824757 43 1.14e-04 TCTTGCAAAA TCGCGCGC CGCAGGCTGC chrII:10284922-10285002 38 1.45e-04 AGATGCACGG TCGCACAC TTGATTCAGC chrI:9268954-9269034 50 1.55e-04 TCAGCCACGT TCGCACGC TCGCCCCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCSCRC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:636818-636898 8.2e-06 15_[+2]_57 chrV:9583087-9583167 8.2e-06 19_[+2]_53 chrV:7231024-7231104 8.2e-06 11_[+2]_61 chrV:8631514-8631594 1.5e-05 55_[+2]_17 chrV:10717003-10717083 1.5e-05 29_[+2]_43 chrIII:3664398-3664478 1.5e-05 22_[+2]_50 chrI:14708107-14708187 1.5e-05 58_[+2]_14 chrIII:8768066-8768146 2.3e-05 72_[+2] chrV:1821429-1821509 2.3e-05 10_[+2]_62 chrII:8716501-8716581 2.3e-05 67_[+2]_5 chrI:4603056-4603136 2.3e-05 13_[+2]_59 chrIII:11236933-11237013 2.3e-05 40_[+2]_32 chrII:4238070-4238150 2.3e-05 55_[+2]_17 chrI:9249346-9249426 2.3e-05 70_[+2]_2 chrIV:1981122-1981202 2.3e-05 33_[+2]_39 chrII:7708739-7708819 3.1e-05 16_[+2]_56 chrII:8325309-8325389 3.1e-05 29_[+2]_43 chrX:16928284-16928364 3.8e-05 12_[+2]_60 chrI:14721583-14721663 4.5e-05 37_[+2]_35 chrX:5244215-5244295 4.5e-05 23_[+2]_49 chrV:4731536-4731616 4.5e-05 63_[+2]_9 chrIII:3916770-3916850 4.5e-05 61_[+2]_11 chrV:6709187-6709267 4.5e-05 54_[+2]_18 chrIV:5371095-5371175 4.5e-05 32_[+2]_40 chrIV:16863649-16863729 5.5e-05 35_[+2]_37 chrV:14524372-14524452 5.5e-05 45_[+2]_27 chrX:9296762-9296842 5.5e-05 41_[+2]_31 chrIV:11605046-11605126 5.5e-05 59_[+2]_13 chrI:1175813-1175893 6.3e-05 66_[+2]_6 chrI:1575663-1575743 8.8e-05 9_[+2]_63 chrI:7715563-7715643 9.8e-05 55_[+2]_17 chrIII:1824677-1824757 0.00011 42_[+2]_30 chrII:10284922-10285002 0.00014 37_[+2]_35 chrI:9268954-9269034 0.00015 49_[+2]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCSCRC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGCSCRC width=8 seqs=34 chrI:636818-636898 ( 16) CCGCGCAC 1 chrV:9583087-9583167 ( 20) CCGCGCAC 1 chrV:7231024-7231104 ( 12) CCGCGCAC 1 chrV:8631514-8631594 ( 56) CCGCGCGC 1 chrV:10717003-10717083 ( 30) CCGCGCGC 1 chrIII:3664398-3664478 ( 23) CCGCGCGC 1 chrI:14708107-14708187 ( 59) CCGCGCGC 1 chrIII:8768066-8768146 ( 73) CCGCCCAC 1 chrV:1821429-1821509 ( 11) CCGCCCAC 1 chrII:8716501-8716581 ( 68) CCGCCCAC 1 chrI:4603056-4603136 ( 14) CCGCCCAC 1 chrIII:11236933-11237013 ( 41) CCGCCCAC 1 chrII:4238070-4238150 ( 56) CCGCCCAC 1 chrI:9249346-9249426 ( 71) CCGCCCAC 1 chrIV:1981122-1981202 ( 34) CCGCCCAC 1 chrII:7708739-7708819 ( 17) GCGCGCAC 1 chrII:8325309-8325389 ( 30) GCGCGCAC 1 chrX:16928284-16928364 ( 13) CCGCCCGC 1 chrI:14721583-14721663 ( 38) GCGCGCGC 1 chrX:5244215-5244295 ( 24) GCGCGCGC 1 chrV:4731536-4731616 ( 64) GCGCGCGC 1 chrIII:3916770-3916850 ( 62) GCGCGCGC 1 chrV:6709187-6709267 ( 55) GCGCGCGC 1 chrIV:5371095-5371175 ( 33) GCGCGCGC 1 chrIV:16863649-16863729 ( 36) CCGCACAC 1 chrV:14524372-14524452 ( 46) CCGCACAC 1 chrX:9296762-9296842 ( 42) CCGCACAC 1 chrIV:11605046-11605126 ( 60) CCGCACAC 1 chrI:1175813-1175893 ( 67) GCGCCCAC 1 chrI:1575663-1575743 ( 10) GCGCACAC 1 chrI:7715563-7715643 ( 56) TCGCGCAC 1 chrIII:1824677-1824757 ( 43) TCGCGCGC 1 chrII:10284922-10285002 ( 38) TCGCACAC 1 chrI:9268954-9269034 ( 50) TCGCACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCSCRC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 5.0e-013 -1173 138 40 -124 -1173 214 -1173 -1173 -1173 -1173 217 -1173 -1173 214 -1173 -1173 -40 38 117 -1173 -1173 214 -1173 -1173 118 -1173 78 -1173 -1173 214 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCSCRC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 5.0e-013 0.000000 0.588235 0.294118 0.117647 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.205882 0.294118 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.617647 0.000000 0.382353 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGCSCRC MEME-2 regular expression -------------------------------------------------------------------------------- [CG]CGC[GCA]C[AG]C -------------------------------------------------------------------------------- Time 9.37 secs. ******************************************************************************** ******************************************************************************** MOTIF WWGAAAAA MEME-3 width = 8 sites = 66 llr = 466 E-value = 1.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif WWGAAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 43:6aaa9 pos.-specific C 12:2:::: probability G 2:a2:::: matrix T 35:::::: bits 2.2 2.0 * *** 1.7 * *** 1.5 * **** Relative 1.3 * **** Entropy 1.1 * **** (10.2 bits) 0.9 * **** 0.7 ****** 0.4 ******* 0.2 ******* 0.0 -------- Multilevel ATGAAAAA consensus TA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWGAAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10400650-10400730 49 2.57e-05 aaagataaaa atgaaaaa taagaagaaa chrIII:3175107-3175187 8 2.57e-05 GCTTAAA ATGAAAAA TCCCCCAAAA chrX:4307573-4307653 28 2.57e-05 TTAATAATTA ATGAAAAA TCGATTAAAT chrIII:5692778-5692858 25 2.57e-05 CAGAAATTTC ATGAAAAA CACTCAAAGG chrV:2697812-2697892 31 2.57e-05 ATAAAATCTC ATGAAAAA AAAATTTCGA chrII:2570836-2570916 59 5.18e-05 AAAAAGTCTT TTGAAAAA CCGGCAAAAA chrIV:4745525-4745605 39 5.18e-05 AAGAATTGAG TTGAAAAA TGAATCTGAA chrIII:1218317-1218397 11 5.18e-05 AACGACACAC TTGAAAAA GACAAAAACT chrIII:12368630-12368710 33 5.18e-05 CTCATAAAAT TTGAAAAA GTTGCTGAAT chrI:1280236-1280316 48 5.18e-05 AACTAATAAT TTGAAAAA AAAAAAGAAA chrIII:3476324-3476404 63 5.18e-05 ACTTAAATTC TTGAAAAA TTTACAGCAT chrIII:1202269-1202349 5 7.70e-05 AATC AAGAAAAA TGATGAAAAT chrII:5691504-5691584 27 7.70e-05 AAGCTTCGAA AAGAAAAA AGAAATAATA chrX:11753456-11753536 64 7.70e-05 ATGTGTgaaa aagaaaaa gaaaacgca chrI:6532102-6532182 53 7.70e-05 CAAGAGAAGT AAGAAAAA TGAAAATATT chrI:1175813-1175893 10 7.70e-05 CGATTTTCC AAGAAAAA TAATAATCGA chrI:5608933-5609013 2 1.24e-04 A TAGAAAAA CATTAATGCA chrII:3482354-3482434 6 1.24e-04 TAAAT GTGAAAAA TATCCGTGGC chrIII:4542535-4542615 4 1.24e-04 GAA TAGAAAAA ATGCGCGGCG chrI:9512154-9512234 6 1.45e-04 TGACT ATGCAAAA ACTGCGTGCC chrIV:13777671-13777751 35 1.88e-04 GGGTCTCGCA ACGAAAAA GTGTGCGCCT chrV:4731536-4731616 54 1.88e-04 TGCGGGGACA TTGCAAAA ACGCGCGCGC chrIII:4426777-4426857 62 1.88e-04 TTTCTGAAAC ACGAAAAA TTTCACAAAA chrIV:16946933-16947013 22 1.88e-04 CGCGCGCCGC TTGCAAAA CTGGGCGGAG chrIV:4510949-4511029 56 1.88e-04 TGCGGCCACC TTGCAAAA TTGTGTGCCA chrI:4633653-4633733 49 1.88e-04 TGTGCCAGGG TTGCAAAA AATCATTTTC chrI:323673-323753 51 1.88e-04 TTTCAAAACT TTGCAAAA TAAAGGCGTC chrI:6724436-6724516 51 1.88e-04 agcgttcctt acgaaaaa atccccttac chrIII:1824677-1824757 35 1.88e-04 TGCGGCGCTC TTGCAAAA TCGCGCGCCG chrI:3873916-3873996 59 1.88e-04 gcgccgcaca ttgcAAAA CTGCAAATGG chrIII:3540576-3540656 47 2.30e-04 GTTTATAGAA TCGAAAAA TGGGAGAAAC chrI:6091083-6091163 3 2.30e-04 TT TCGAAAAA ATCCAAAAGC chrI:3176557-3176637 18 2.30e-04 ACCATTTGTA CTGAAAAA AAAGAAAATT chrIII:11091767-11091847 51 2.30e-04 CTCCTTGTGA CTGAAAAA TGACAAAAAT chrII:6835678-6835758 16 2.30e-04 ATCTCAACAC TCGAAAAA CCAATTAATT chrIII:11236933-11237013 3 2.51e-04 at aTGGAAAA AAGTGTGCGG chrIII:8650432-8650512 33 2.93e-04 TGCCCGGCTG GAGAAAAA TGGGGGACTT chrI:4367921-4368001 16 3.14e-04 GAAAGTGCGC AAGCAAAA ATCGAGAGAG chrX:10616166-10616246 58 3.14e-04 CCTGAGTCTA AAGCAAAA CGATTAAATT chrM:10801-10881 68 3.53e-04 GACATTAAGG TAGCAAAA TAATT chrII:14143954-14144034 27 3.91e-04 GGAATAGAGG GCGAAAAA TTGGAAGAAG chrV:11852588-11852668 5 3.91e-04 GCTG CAGAAAAA TCCTGGAAAT chrV:11641498-11641578 44 3.91e-04 CAGACGGCAG GCGAAAAA AGCTCGCAAG chrI:7015706-7015786 36 3.91e-04 ATGCGCACTT CAGAAAAA AGCGAATCGC chrII:5399352-5399432 31 3.91e-04 CGGCACAATT GCGAAAAA GCGGGCCGCA chrIV:15289645-15289725 47 4.29e-04 CTAGATGACA AAGGAAAA TGTGACTGCT chrII:5956236-5956316 44 4.29e-04 AATTAGGAAA AAGGAAAA CTATAAAATT chrIV:2033174-2033254 57 5.03e-04 GACGCCACAG GTGGAAAA GTACTCGTGG chrV:13962155-13962235 62 5.03e-04 CGCGCGGCAA CTGCAAAA AAGGGCGGAG chrX:12367604-12367684 24 5.03e-04 TTCTTCACAA CTGCAAAA AGAAACTTCC chrI:7094972-7095052 22 5.54e-04 ATCAGTTATG ACGGAAAA CACGTCAAGT chrIV:5974350-5974430 36 5.54e-04 CGGTTGGTTG GAGCAAAA GGGGGGTGAG chrI:9249346-9249426 45 5.54e-04 AACGAAGCGA ACGGAAAA GAGGGCGGGG chrV:11239347-11239427 61 5.89e-04 GCGGTAGTTA CTGGAAAA CTGTTTTCCG chrI:14606045-14606125 4 5.89e-04 TAG CTGGAAAA GTGCGCGGCA chrIV:11310756-11310836 29 6.38e-04 AGTAAAATAA GAGGAAAA GTGCGCGGCG chrX:9622808-9622888 2 6.38e-04 A GAGGAAAA CGTTCATGGA chrV:311659-311739 29 6.38e-04 TTTAATTGAC GCGCAAAA CATTTAATTG chrIV:5809851-5809931 59 6.38e-04 TCATGCTGGA GAGGAAAA AGCTTTTGGA chrX:3348106-3348186 61 7.19e-04 CTTCGGCCCG ATGAAAAC GTTAATAACG chrI:12004907-12004987 24 7.19e-04 aaaaataaca atgaaaaC TGCGCGCGTG chrII:8964924-8965004 12 8.26e-04 AACCTGTATT ATGAAAAT AAATGAAGAG chrIII:9465606-9465686 32 8.26e-04 CGCGTTGGCC TAGAAAAC GCATGTCAGC chrV:1383702-1383782 64 8.71e-04 GAATAATTAC TTGAAAAT TGAACGTTT chrM:4804-4884 15 1.01e-03 AAGATATCGT TTAAAAAA AGTATGAATG chrX:13145034-13145114 9 1.01e-03 CAAGTCTT TTAAAAAA GCAATGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWGAAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10400650-10400730 2.6e-05 48_[+3]_24 chrIII:3175107-3175187 2.6e-05 7_[+3]_65 chrX:4307573-4307653 2.6e-05 27_[+3]_45 chrIII:5692778-5692858 2.6e-05 24_[+3]_48 chrV:2697812-2697892 2.6e-05 30_[+3]_42 chrII:2570836-2570916 5.2e-05 58_[+3]_14 chrIV:4745525-4745605 5.2e-05 38_[+3]_34 chrIII:1218317-1218397 5.2e-05 10_[+3]_62 chrIII:12368630-12368710 5.2e-05 32_[+3]_40 chrI:1280236-1280316 5.2e-05 47_[+3]_25 chrIII:3476324-3476404 5.2e-05 62_[+3]_10 chrIII:1202269-1202349 7.7e-05 4_[+3]_68 chrII:5691504-5691584 7.7e-05 26_[+3]_46 chrX:11753456-11753536 7.7e-05 63_[+3]_9 chrI:6532102-6532182 7.7e-05 52_[+3]_20 chrI:1175813-1175893 7.7e-05 9_[+3]_63 chrI:5608933-5609013 0.00012 1_[+3]_71 chrII:3482354-3482434 0.00012 5_[+3]_67 chrIII:4542535-4542615 0.00012 3_[+3]_69 chrI:9512154-9512234 0.00014 5_[+3]_67 chrIV:13777671-13777751 0.00019 34_[+3]_38 chrV:4731536-4731616 0.00019 53_[+3]_19 chrIII:4426777-4426857 0.00019 61_[+3]_11 chrIV:16946933-16947013 0.00019 21_[+3]_51 chrIV:4510949-4511029 0.00019 55_[+3]_17 chrI:4633653-4633733 0.00019 48_[+3]_24 chrI:323673-323753 0.00019 50_[+3]_22 chrI:6724436-6724516 0.00019 50_[+3]_22 chrIII:1824677-1824757 0.00019 34_[+3]_38 chrI:3873916-3873996 0.00019 58_[+3]_14 chrIII:3540576-3540656 0.00023 46_[+3]_26 chrI:6091083-6091163 0.00023 2_[+3]_70 chrI:3176557-3176637 0.00023 17_[+3]_55 chrIII:11091767-11091847 0.00023 50_[+3]_22 chrII:6835678-6835758 0.00023 15_[+3]_57 chrIII:11236933-11237013 0.00025 2_[+3]_70 chrIII:8650432-8650512 0.00029 32_[+3]_40 chrI:4367921-4368001 0.00031 15_[+3]_57 chrX:10616166-10616246 0.00031 57_[+3]_15 chrM:10801-10881 0.00035 67_[+3]_5 chrII:14143954-14144034 0.00039 26_[+3]_46 chrV:11852588-11852668 0.00039 4_[+3]_68 chrV:11641498-11641578 0.00039 43_[+3]_29 chrI:7015706-7015786 0.00039 35_[+3]_37 chrII:5399352-5399432 0.00039 30_[+3]_42 chrIV:15289645-15289725 0.00043 46_[+3]_26 chrII:5956236-5956316 0.00043 43_[+3]_29 chrIV:2033174-2033254 0.0005 56_[+3]_16 chrV:13962155-13962235 0.0005 61_[+3]_11 chrX:12367604-12367684 0.0005 23_[+3]_49 chrI:7094972-7095052 0.00055 21_[+3]_51 chrIV:5974350-5974430 0.00055 35_[+3]_37 chrI:9249346-9249426 0.00055 44_[+3]_28 chrV:11239347-11239427 0.00059 60_[+3]_12 chrI:14606045-14606125 0.00059 3_[+3]_69 chrIV:11310756-11310836 0.00064 28_[+3]_44 chrX:9622808-9622888 0.00064 1_[+3]_71 chrV:311659-311739 0.00064 28_[+3]_44 chrIV:5809851-5809931 0.00064 58_[+3]_14 chrX:3348106-3348186 0.00072 60_[+3]_12 chrI:12004907-12004987 0.00072 23_[+3]_49 chrII:8964924-8965004 0.00083 11_[+3]_61 chrIII:9465606-9465686 0.00083 31_[+3]_41 chrV:1383702-1383782 0.00087 63_[+3]_9 chrM:4804-4884 0.001 14_[+3]_58 chrX:13145034-13145114 0.001 8_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWGAAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WWGAAAAA width=8 seqs=66 chrI:10400650-10400730 ( 49) ATGAAAAA 1 chrIII:3175107-3175187 ( 8) ATGAAAAA 1 chrX:4307573-4307653 ( 28) ATGAAAAA 1 chrIII:5692778-5692858 ( 25) ATGAAAAA 1 chrV:2697812-2697892 ( 31) ATGAAAAA 1 chrII:2570836-2570916 ( 59) TTGAAAAA 1 chrIV:4745525-4745605 ( 39) TTGAAAAA 1 chrIII:1218317-1218397 ( 11) TTGAAAAA 1 chrIII:12368630-12368710 ( 33) TTGAAAAA 1 chrI:1280236-1280316 ( 48) TTGAAAAA 1 chrIII:3476324-3476404 ( 63) TTGAAAAA 1 chrIII:1202269-1202349 ( 5) AAGAAAAA 1 chrII:5691504-5691584 ( 27) AAGAAAAA 1 chrX:11753456-11753536 ( 64) AAGAAAAA 1 chrI:6532102-6532182 ( 53) AAGAAAAA 1 chrI:1175813-1175893 ( 10) AAGAAAAA 1 chrI:5608933-5609013 ( 2) TAGAAAAA 1 chrII:3482354-3482434 ( 6) GTGAAAAA 1 chrIII:4542535-4542615 ( 4) TAGAAAAA 1 chrI:9512154-9512234 ( 6) ATGCAAAA 1 chrIV:13777671-13777751 ( 35) ACGAAAAA 1 chrV:4731536-4731616 ( 54) TTGCAAAA 1 chrIII:4426777-4426857 ( 62) ACGAAAAA 1 chrIV:16946933-16947013 ( 22) TTGCAAAA 1 chrIV:4510949-4511029 ( 56) TTGCAAAA 1 chrI:4633653-4633733 ( 49) TTGCAAAA 1 chrI:323673-323753 ( 51) TTGCAAAA 1 chrI:6724436-6724516 ( 51) ACGAAAAA 1 chrIII:1824677-1824757 ( 35) TTGCAAAA 1 chrI:3873916-3873996 ( 59) TTGCAAAA 1 chrIII:3540576-3540656 ( 47) TCGAAAAA 1 chrI:6091083-6091163 ( 3) TCGAAAAA 1 chrI:3176557-3176637 ( 18) CTGAAAAA 1 chrIII:11091767-11091847 ( 51) CTGAAAAA 1 chrII:6835678-6835758 ( 16) TCGAAAAA 1 chrIII:11236933-11237013 ( 3) ATGGAAAA 1 chrIII:8650432-8650512 ( 33) GAGAAAAA 1 chrI:4367921-4368001 ( 16) AAGCAAAA 1 chrX:10616166-10616246 ( 58) AAGCAAAA 1 chrM:10801-10881 ( 68) TAGCAAAA 1 chrII:14143954-14144034 ( 27) GCGAAAAA 1 chrV:11852588-11852668 ( 5) CAGAAAAA 1 chrV:11641498-11641578 ( 44) GCGAAAAA 1 chrI:7015706-7015786 ( 36) CAGAAAAA 1 chrII:5399352-5399432 ( 31) GCGAAAAA 1 chrIV:15289645-15289725 ( 47) AAGGAAAA 1 chrII:5956236-5956316 ( 44) AAGGAAAA 1 chrIV:2033174-2033254 ( 57) GTGGAAAA 1 chrV:13962155-13962235 ( 62) CTGCAAAA 1 chrX:12367604-12367684 ( 24) CTGCAAAA 1 chrI:7094972-7095052 ( 22) ACGGAAAA 1 chrIV:5974350-5974430 ( 36) GAGCAAAA 1 chrI:9249346-9249426 ( 45) ACGGAAAA 1 chrV:11239347-11239427 ( 61) CTGGAAAA 1 chrI:14606045-14606125 ( 4) CTGGAAAA 1 chrIV:11310756-11310836 ( 29) GAGGAAAA 1 chrX:9622808-9622888 ( 2) GAGGAAAA 1 chrV:311659-311739 ( 29) GCGCAAAA 1 chrIV:5809851-5809931 ( 59) GAGGAAAA 1 chrX:3348106-3348186 ( 61) ATGAAAAC 1 chrI:12004907-12004987 ( 24) ATGAAAAC 1 chrII:8964924-8965004 ( 12) ATGAAAAT 1 chrIII:9465606-9465686 ( 32) TAGAAAAC 1 chrV:1383702-1383782 ( 64) TTGAAAAT 1 chrM:4804-4884 ( 15) TTAAAAAA 1 chrX:13145034-13145114 ( 9) TTAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWGAAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.87455 E= 1.7e+000 42 -90 -42 32 15 -32 -1269 89 -317 -1269 212 -1269 115 0 -42 -1269 188 -1269 -1269 -1269 188 -1269 -1269 -1269 188 -1269 -1269 -1269 176 -232 -1269 -320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWGAAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 1.7e+000 0.363636 0.121212 0.166667 0.348485 0.303030 0.181818 0.000000 0.515152 0.030303 0.000000 0.969697 0.000000 0.606061 0.227273 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.924242 0.045455 0.000000 0.030303 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWGAAAAA MEME-3 regular expression -------------------------------------------------------------------------------- [AT][TA]G[AC]AAAA -------------------------------------------------------------------------------- Time 13.26 secs. ******************************************************************************** ******************************************************************************** MOTIF SYGCCGCA MEME-4 width = 8 sites = 22 llr = 202 E-value = 1.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYGCCGCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 552a9:a: probability G 5:8:1a:: matrix T :5:::::: bits 2.2 * * 2.0 * *** 1.7 * *** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******** (13.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCA consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCGCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6724436-6724516 18 8.04e-06 gcgaaaaggc gcgccgca cattgcccta chrI:3873916-3873996 49 8.04e-06 gcgaataggc gcgccgca cattgcAAAA chrIII:11236933-11237013 55 8.04e-06 CCACATTTCC GCGCCGCA CCCGAATCAT chrI:12004907-12004987 58 8.04e-06 GCAGACTGGC GCGCCGCA GCTTGCAAAG chrV:11239347-11239427 42 1.62e-05 TTTTGCAACC CCGCCGCA TGCGGTAGTT chrV:3587794-3587874 42 1.62e-05 TTTCGCAACT CCGCCGCA CAGTTTTATC chrX:9296762-9296842 16 1.62e-05 CCCATGCAAC CCGCCGCA TGGTGTTTTG chrIV:5371095-5371175 50 1.62e-05 CTTCCGCAAC CCGCCGCA TAGTTTTTTT chrII:3808233-3808313 62 2.61e-05 GACACGCAAA GTGCCGCA CGGCTTTTTG chrIV:1981122-1981202 48 2.61e-05 CCACTTTTCC GTGCCGCA TCGCAAATAT chrI:1823158-1823238 55 3.61e-05 TTAACACCGA CTGCCGCA GAGAATGAAT chrIII:3664398-3664478 42 3.61e-05 TTTCGCAACG CTGCCGCA CGTAGTTTAT chrV:7231024-7231104 33 3.61e-05 TTATGCAATG CTGCCGCA CGAATTCCTC chrI:14708107-14708187 35 3.61e-05 CCATTTGCAA CTGCCGCA CGGCGTTTTG chrI:6136621-6136701 34 4.43e-05 GCGGGTTCGA GCCCCGCA TTGGGCTCAT chrI:1575663-1575743 2 5.26e-05 A CCCCCGCA GCGCACACAC chrV:13962155-13962235 53 6.05e-05 CATAAACTGC GCGCGGCA ACTGCAAAAA chrIII:11825751-11825831 34 7.86e-05 CATCGATTTC GTCCCGCA ATTATTACGC chrII:7708739-7708819 38 8.88e-05 TTTTGCAATT CTCCCGCA CGGAGTCACA chrII:4238070-4238150 10 9.84e-05 AAATGCCTC GTGCGGCA CACTTGCGAA chrX:17181390-17181470 12 1.08e-04 CCTCTGTTCT CTGCGGCA CCAACActct chrIV:5354312-5354392 13 1.16e-04 TGGTGCAATC GCGCCCCA TCGCACATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCGCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6724436-6724516 8e-06 17_[+4]_55 chrI:3873916-3873996 8e-06 48_[+4]_24 chrIII:11236933-11237013 8e-06 54_[+4]_18 chrI:12004907-12004987 8e-06 57_[+4]_15 chrV:11239347-11239427 1.6e-05 41_[+4]_31 chrV:3587794-3587874 1.6e-05 41_[+4]_31 chrX:9296762-9296842 1.6e-05 15_[+4]_57 chrIV:5371095-5371175 1.6e-05 49_[+4]_23 chrII:3808233-3808313 2.6e-05 61_[+4]_11 chrIV:1981122-1981202 2.6e-05 47_[+4]_25 chrI:1823158-1823238 3.6e-05 54_[+4]_18 chrIII:3664398-3664478 3.6e-05 41_[+4]_31 chrV:7231024-7231104 3.6e-05 32_[+4]_40 chrI:14708107-14708187 3.6e-05 34_[+4]_38 chrI:6136621-6136701 4.4e-05 33_[+4]_39 chrI:1575663-1575743 5.3e-05 1_[+4]_71 chrV:13962155-13962235 6e-05 52_[+4]_20 chrIII:11825751-11825831 7.9e-05 33_[+4]_39 chrII:7708739-7708819 8.9e-05 37_[+4]_35 chrII:4238070-4238150 9.8e-05 9_[+4]_63 chrX:17181390-17181470 0.00011 11_[+4]_61 chrIV:5354312-5354392 0.00012 12_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCGCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYGCCGCA width=8 seqs=22 chrI:6724436-6724516 ( 18) GCGCCGCA 1 chrI:3873916-3873996 ( 49) GCGCCGCA 1 chrIII:11236933-11237013 ( 55) GCGCCGCA 1 chrI:12004907-12004987 ( 58) GCGCCGCA 1 chrV:11239347-11239427 ( 42) CCGCCGCA 1 chrV:3587794-3587874 ( 42) CCGCCGCA 1 chrX:9296762-9296842 ( 16) CCGCCGCA 1 chrIV:5371095-5371175 ( 50) CCGCCGCA 1 chrII:3808233-3808313 ( 62) GTGCCGCA 1 chrIV:1981122-1981202 ( 48) GTGCCGCA 1 chrI:1823158-1823238 ( 55) CTGCCGCA 1 chrIII:3664398-3664478 ( 42) CTGCCGCA 1 chrV:7231024-7231104 ( 33) CTGCCGCA 1 chrI:14708107-14708187 ( 35) CTGCCGCA 1 chrI:6136621-6136701 ( 34) GCCCCGCA 1 chrI:1575663-1575743 ( 2) CCCCCGCA 1 chrV:13962155-13962235 ( 53) GCGCGGCA 1 chrIII:11825751-11825831 ( 34) GTCCCGCA 1 chrII:7708739-7708819 ( 38) CTCCCGCA 1 chrII:4238070-4238150 ( 10) GTGCGGCA 1 chrX:17181390-17181470 ( 12) CTGCGGCA 1 chrIV:5354312-5354392 ( 13) GCGCCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCGCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.35419 E= 1.1e-001 -1110 114 117 -1110 -1110 127 -1110 71 -1110 -32 188 -1110 -1110 214 -1110 -1110 -1110 193 -71 -1110 -1110 -232 210 -1110 -1110 214 -1110 -1110 187 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCGCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.1e-001 0.000000 0.500000 0.500000 0.000000 0.000000 0.545455 0.000000 0.454545 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.863636 0.136364 0.000000 0.000000 0.045455 0.954545 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCCGCA MEME-4 regular expression -------------------------------------------------------------------------------- [CG][CT]GCCGCA -------------------------------------------------------------------------------- Time 17.01 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-5 width = 8 sites = 20 llr = 182 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::97::1 pos.-specific C :9:2:9a9 probability G ::a:3::: matrix T a1::12:: bits 2.2 * * 2.0 * * * 1.7 *** ** 1.5 *** *** Relative 1.3 **** *** Entropy 1.1 **** *** (13.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:620497-620577 39 1.23e-05 GGTCGCCGGT TCGAACCC GGCGAGGACC chrX:16928284-16928364 2 1.23e-05 a tcgaaccc gggccgcccg chrX:12367604-12367684 53 1.23e-05 ATGCCGGGAA TCGAACCC GGGCCGCGTG chrI:8530141-8530221 2 1.23e-05 A TCGAACCC CGGCCTTATG chrI:788123-788203 31 1.23e-05 CAATTTCACA TCGAACCC GGGAAAGCTC chrIV:14013787-14013867 33 1.23e-05 GTATGGGGAA TCGAACCC CAGACTTCTC chrV:16622056-16622136 18 1.23e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrV:19723018-19723098 67 2.23e-05 GGTTGGTGGT TCGAGCCC ACCCGG chrI:12065889-12065969 30 2.23e-05 GGTCGGTGGT TCGAGCCC GCCCGAGATC chrI:9268954-9269034 5 3.25e-05 CCTC TCGCACCC TAAGCGAGAA chrIII:8417326-8417406 52 3.25e-05 ATACGGTATC TCGCACCC TCTGCTTAAT chrIII:535390-535470 57 4.75e-05 GGTCACTGGT TCGAATCC GGTTCGACGG chrX:4617095-4617175 15 5.58e-05 GCAAACCGCG TCGCGCCC CATATATCAT chrX:16604714-16604794 21 8.56e-05 CGGCCGGGAA TTGAACCC GGGTCTCGCA chrX:9622808-9622888 31 8.56e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrI:3176557-3176637 4 8.56e-05 GAT TCGAACCA TTTGTACTGA chrIII:7030548-7030628 24 8.56e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrII:11959360-11959440 69 9.81e-05 GGCCGCCGGT TCGATCCC GGCC chrII:6565264-6565344 38 1.10e-04 GGTCAGGGGT TCGAGTCC CCTAGGTGGC chrX:11766415-11766495 47 1.10e-04 ATGAGACTCC TCGAGTCC CCTATAGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:620497-620577 1.2e-05 38_[+5]_34 chrX:16928284-16928364 1.2e-05 1_[+5]_71 chrX:12367604-12367684 1.2e-05 52_[+5]_20 chrI:8530141-8530221 1.2e-05 1_[+5]_71 chrI:788123-788203 1.2e-05 30_[+5]_42 chrIV:14013787-14013867 1.2e-05 32_[+5]_40 chrV:16622056-16622136 1.2e-05 17_[+5]_55 chrV:19723018-19723098 2.2e-05 66_[+5]_6 chrI:12065889-12065969 2.2e-05 29_[+5]_43 chrI:9268954-9269034 3.2e-05 4_[+5]_68 chrIII:8417326-8417406 3.2e-05 51_[+5]_21 chrIII:535390-535470 4.8e-05 56_[+5]_16 chrX:4617095-4617175 5.6e-05 14_[+5]_58 chrX:16604714-16604794 8.6e-05 20_[+5]_52 chrX:9622808-9622888 8.6e-05 30_[+5]_42 chrI:3176557-3176637 8.6e-05 3_[+5]_69 chrIII:7030548-7030628 8.6e-05 23_[+5]_49 chrII:11959360-11959440 9.8e-05 68_[+5]_4 chrII:6565264-6565344 0.00011 37_[+5]_35 chrX:11766415-11766495 0.00011 46_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=20 chrIV:620497-620577 ( 39) TCGAACCC 1 chrX:16928284-16928364 ( 2) TCGAACCC 1 chrX:12367604-12367684 ( 53) TCGAACCC 1 chrI:8530141-8530221 ( 2) TCGAACCC 1 chrI:788123-788203 ( 31) TCGAACCC 1 chrIV:14013787-14013867 ( 33) TCGAACCC 1 chrV:16622056-16622136 ( 18) TCGAACCC 1 chrV:19723018-19723098 ( 67) TCGAGCCC 1 chrI:12065889-12065969 ( 30) TCGAGCCC 1 chrI:9268954-9269034 ( 5) TCGCACCC 1 chrIII:8417326-8417406 ( 52) TCGCACCC 1 chrIII:535390-535470 ( 57) TCGAATCC 1 chrX:4617095-4617175 ( 15) TCGCGCCC 1 chrX:16604714-16604794 ( 21) TTGAACCC 1 chrX:9622808-9622888 ( 31) TTGAACCC 1 chrI:3176557-3176637 ( 4) TCGAACCA 1 chrIII:7030548-7030628 ( 24) TCGAACCA 1 chrII:11959360-11959440 ( 69) TCGATCCC 1 chrII:6565264-6565344 ( 38) TCGAGTCC 1 chrX:11766415-11766495 ( 47) TCGAGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 1.3e+002 -1097 -1097 -1097 185 -1097 199 -1097 -147 -1097 -1097 217 -1097 164 -60 -1097 -1097 136 -1097 17 -247 -1097 191 -1097 -89 -1097 214 -1097 -1097 -145 199 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.3e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 1.000000 0.000000 0.850000 0.150000 0.000000 0.000000 0.700000 0.000000 0.250000 0.050000 0.000000 0.850000 0.000000 0.150000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-5 regular expression -------------------------------------------------------------------------------- TCGA[AG]CCC -------------------------------------------------------------------------------- Time 20.72 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11766415-11766495 2.24e-01 80 chrII:2570635-2570715 8.21e-01 80 chrII:6391962-6392042 4.49e-01 80 chrII:10373915-10373995 9.28e-01 80 chrIV:11868011-11868091 9.19e-01 80 chrIII:12615116-12615196 6.73e-01 80 chrIV:5371095-5371175 4.69e-05 32_[+2(4.46e-05)]_9_[+4(1.62e-05)]_\ 23 chrI:4973275-4973355 9.98e-01 80 chrX:15347862-15347942 3.29e-01 80 chrV:265223-265303 7.44e-01 80 chrII:5399352-5399432 8.02e-05 17_[+1(6.92e-05)]_55 chrV:16622056-16622136 3.36e-02 17_[+5(1.23e-05)]_55 chrI:14708107-14708187 2.93e-04 34_[+4(3.61e-05)]_16_[+2(1.49e-05)]_\ 14 chrM:10801-10881 2.29e-01 80 chrV:20832692-20832772 9.28e-01 80 chrIII:3499973-3500053 1.67e-01 80 chrIV:14013787-14013867 1.16e-02 32_[+5(1.23e-05)]_40 chrII:10284922-10285002 5.57e-02 80 chrIII:13293107-13293187 9.95e-01 80 chrI:1836533-1836613 2.66e-02 80 chrIV:11605046-11605126 1.81e-05 27_[+1(3.45e-05)]_21_[+4(2.61e-05)]_\ 16 chrIII:13781114-13781194 2.78e-01 80 chrV:265753-265833 7.76e-01 80 chrIV:11872113-11872193 8.82e-01 80 chrX:8156109-8156189 5.14e-01 80 chrX:12693460-12693540 9.06e-01 80 chrM:7940-8020 9.96e-01 80 chrII:5956236-5956316 6.14e-01 80 chrI:788123-788203 4.61e-02 30_[+5(1.23e-05)]_42 chrX:9296762-9296842 5.30e-04 15_[+4(1.62e-05)]_18_[+2(5.46e-05)]_\ 31 chrV:3587794-3587874 1.40e-03 41_[+4(1.62e-05)]_31 chrV:1383702-1383782 6.98e-01 80 chrII:10990769-10990849 1.84e-01 80 chrV:2697812-2697892 3.50e-04 30_[+3(2.57e-05)]_24_[+1(2.07e-05)]_\ 10 chrIII:8098776-8098856 5.55e-01 80 chrX:12688672-12688752 4.67e-01 80 chrIV:1981122-1981202 3.64e-06 8_[+1(2.07e-05)]_17_[+2(2.32e-05)]_\ 6_[+4(2.61e-05)]_25 chrIV:9316171-9316251 9.28e-03 50_[+1(1.42e-05)]_22 chrX:3914419-3914499 1.35e-02 80 chrV:14524372-14524452 3.95e-03 45_[+2(5.46e-05)]_27 chrI:9249346-9249426 1.83e-04 54_[+1(3.45e-05)]_8_[+2(2.32e-05)]_\ 2 chrV:13176523-13176603 1.20e-02 46_[+1(3.45e-05)]_26 chrX:4617095-4617175 1.95e-05 14_[+5(5.58e-05)]_58 chrX:8944276-8944356 2.80e-01 80 chrIV:1687250-1687330 3.21e-01 80 chrI:13421146-13421226 9.87e-01 80 chrIV:15289645-15289725 2.35e-01 80 chrIV:13549486-13549566 4.41e-01 80 chrI:449506-449586 9.74e-01 80 chrIII:3476324-3476404 5.54e-03 19_[+1(3.45e-05)]_35_[+3(5.18e-05)]_\ 10 chrM:7091-7171 9.48e-01 80 chrX:14513575-14513655 1.00e+00 80 chrI:12004907-12004987 1.07e-04 57_[+4(8.04e-06)]_15 chrII:4238070-4238150 1.02e-05 9_[+1(6.92e-05)]_15_[+1(1.42e-05)]_\ 15_[+2(2.32e-05)]_17 chrIV:16863649-16863729 1.39e-05 8_[+1(3.45e-05)]_16_[+4(8.04e-06)]_\ 40 chrII:8325309-8325389 1.18e-02 29_[+2(3.12e-05)]_43 chrI:4176016-4176096 1.00e+00 80 chrIV:5354312-5354392 1.51e-04 10_[+5(5.58e-05)]_62 chrI:933476-933556 9.42e-01 80 chrIV:14576649-14576729 7.22e-01 80 chrIII:11236933-11237013 4.04e-08 14_[+1(1.42e-05)]_18_[+2(2.32e-05)]_\ 6_[+4(8.04e-06)]_18 chrI:15052709-15052789 4.02e-01 80 chrI:12065889-12065969 2.72e-03 29_[+5(2.23e-05)]_43 chrI:1175813-1175893 3.21e-06 9_[+3(7.70e-05)]_25_[+1(6.92e-05)]_\ 16_[+2(6.28e-05)]_6 chrIV:5809851-5809931 1.01e-01 80 chrV:11933380-11933460 9.80e-01 80 chrI:6532102-6532182 2.29e-02 52_[+3(7.70e-05)]_20 chrIV:385241-385321 2.56e-01 80 chrV:7231024-7231104 5.17e-05 11_[+2(8.18e-06)]_13_[+4(3.61e-05)]_\ 40 chrIII:3664398-3664478 1.61e-04 22_[+2(1.49e-05)]_11_[+4(3.61e-05)]_\ 31 chrII:6835678-6835758 4.82e-01 80 chrM:4602-4682 9.84e-01 80 chrIII:10432245-10432325 3.93e-01 80 chrIV:5038884-5038964 9.98e-01 80 chrIV:14077034-14077114 9.35e-01 80 chrX:9078297-9078377 1.63e-01 80 chrM:2156-2236 9.79e-01 80 chrI:4603056-4603136 1.07e-02 13_[+2(2.32e-05)]_16_[+2(8.75e-05)]_\ 35 chrII:6565264-6565344 1.45e-01 80 chrV:16553090-16553170 9.98e-01 80 chrII:3553544-3553624 5.56e-01 80 chrX:8638986-8639066 7.29e-01 80 chrI:14606045-14606125 5.06e-06 13_[+4(6.05e-05)]_59 chrIII:5692778-5692858 9.15e-02 24_[+3(2.57e-05)]_48 chrIII:11091767-11091847 1.52e-01 80 chrI:10161943-10162023 7.63e-02 80 chrI:1280236-1280316 1.65e-01 47_[+3(5.18e-05)]_25 chrI:8530141-8530221 3.38e-02 1_[+5(1.23e-05)]_71 chrIII:12616222-12616302 5.69e-02 80 chrII:2794570-2794650 7.34e-01 80 chrI:3873916-3873996 2.63e-06 25_[+1(1.42e-05)]_15_[+4(8.04e-06)]_\ 24 chrX:13739270-13739350 9.85e-01 80 chrII:8716501-8716581 4.19e-03 67_[+2(2.32e-05)]_5 chrI:586693-586773 6.51e-01 80 chrI:1575663-1575743 3.81e-04 1_[+4(5.26e-05)]_[+2(8.75e-05)]_63 chrV:14130491-14130571 8.79e-01 80 chrIII:4542535-4542615 2.14e-04 13_[+1(2.07e-05)]_59 chrIII:10396875-10396955 3.15e-01 80 chrX:17181390-17181470 4.70e-02 80 chrX:2920528-2920608 7.66e-01 80 chrI:4132214-4132294 3.77e-02 80 chrM:9467-9547 9.88e-01 80 chrX:10616166-10616246 6.15e-01 80 chrV:178251-178331 7.41e-01 80 chrIII:1824677-1824757 1.90e-07 23_[+1(1.42e-05)]_15_[+4(8.04e-06)]_\ 26 chrII:14635364-14635444 2.21e-01 80 chrI:7015706-7015786 9.49e-02 80 chrX:13415134-13415214 3.94e-01 80 chrX:4307573-4307653 4.56e-02 27_[+3(2.57e-05)]_45 chrI:6136621-6136701 1.41e-03 29_[+5(2.23e-05)]_43 chrV:9583087-9583167 3.67e-03 3_[+2(2.32e-05)]_8_[+2(8.18e-06)]_\ 53 chrV:18832809-18832889 7.23e-01 80 chrIII:9465606-9465686 4.48e-01 80 chrV:1821429-1821509 1.32e-04 10_[+2(2.32e-05)]_7_[+4(6.05e-05)]_\ 16_[+2(8.75e-05)]_23 chrIV:5334687-5334767 6.33e-01 80 chrIV:5854529-5854609 1.10e-01 80 chrIII:3175107-3175187 1.67e-04 7_[+3(2.57e-05)]_38_[+1(6.92e-05)]_\ 19 chrII:3959945-3960025 9.06e-01 80 chrIII:7030548-7030628 3.10e-02 23_[+5(8.56e-05)]_49 chrV:11641498-11641578 4.17e-02 80 chrV:19723018-19723098 3.84e-03 66_[+5(2.23e-05)]_6 chrX:9024454-9024534 3.67e-01 80 chrX:12890320-12890400 6.59e-02 80 chrX:11753456-11753536 2.27e-01 63_[+3(7.70e-05)]_9 chrIV:14032830-14032910 1.96e-02 22_[+1(6.34e-06)]_50 chrII:12042384-12042464 1.78e-01 80 chrII:4791449-4791529 3.07e-01 80 chrII:8964924-8965004 7.24e-01 80 chrV:2672768-2672848 4.61e-01 80 chrX:12337954-12338034 2.55e-02 80 chrI:9512154-9512234 9.62e-03 80 chrV:11852588-11852668 9.68e-02 80 chrI:6724436-6724516 5.56e-05 17_[+4(8.04e-06)]_55 chrII:5691504-5691584 2.83e-03 26_[+3(7.70e-05)]_46 chrIV:16684413-16684493 4.66e-01 80 chrI:2485593-2485673 9.65e-03 27_[+1(8.98e-05)]_45 chrV:311659-311739 3.24e-02 80 chrII:3482354-3482434 2.11e-02 80 chrX:6613739-6613819 3.35e-02 5_[+1(1.42e-05)]_67 chrI:323673-323753 3.30e-01 80 chrIII:12368630-12368710 3.25e-01 32_[+3(5.18e-05)]_40 chrM:3557-3637 1.00e+00 80 chrI:10400650-10400730 2.36e-01 48_[+3(2.57e-05)]_4_[+3(7.70e-05)]_\ 12 chrIII:1218317-1218397 2.64e-02 10_[+3(5.18e-05)]_62 chrIV:3521872-3521952 8.22e-01 80 chrV:11337395-11337475 8.88e-01 80 chrIV:2639827-2639907 6.04e-03 4_[+1(8.98e-05)]_68 chrIII:8650432-8650512 4.24e-03 80 chrI:4633653-4633733 3.53e-03 80 chrV:10717003-10717083 5.42e-03 29_[+2(1.49e-05)]_43 chrIV:3763600-3763680 2.02e-03 63_[+1(4.23e-05)]_9 chrII:3808233-3808313 1.95e-04 32_[+1(3.45e-05)]_21_[+4(2.61e-05)]_\ 11 chrIII:13225214-13225294 1.21e-01 80 chrII:7001603-7001683 3.98e-01 80 chrIII:13293313-13293393 9.25e-01 80 chrII:7708739-7708819 1.30e-03 16_[+2(3.12e-05)]_13_[+4(8.88e-05)]_\ 35 chrI:7224527-7224607 5.90e-01 80 chrII:6741569-6741649 3.67e-01 80 chrIV:4745525-4745605 2.07e-01 38_[+3(5.18e-05)]_34 chrIII:11825751-11825831 7.10e-02 33_[+4(7.86e-05)]_39 chrIV:4510949-4511029 5.80e-02 80 chrM:1196-1276 9.84e-01 80 chrIII:6805546-6805626 2.85e-01 80 chrIV:13289562-13289642 3.40e-01 80 chrI:4967607-4967687 3.57e-01 80 chrI:1415957-1416037 7.09e-01 80 chrX:12367604-12367684 1.29e-04 52_[+5(1.23e-05)]_[+1(8.98e-05)]_12 chrI:788322-788402 2.50e-01 80 chrIII:12613739-12613819 1.32e-01 80 chrX:13145034-13145114 3.73e-01 80 chrX:14115636-14115716 6.09e-02 80 chrV:11239347-11239427 1.86e-04 41_[+4(1.62e-05)]_31 chrV:15553968-15554048 6.79e-01 80 chrM:12382-12462 9.78e-01 80 chrV:8631514-8631594 5.01e-04 22_[+1(3.45e-05)]_25_[+2(1.49e-05)]_\ 17 chrX:3994611-3994691 2.07e-02 80 chrIII:4587372-4587452 6.22e-01 80 chrIII:8768066-8768146 6.52e-05 16_[+1(1.42e-05)]_48_[+2(2.32e-05)] chrI:4367921-4368001 6.35e-03 80 chrIV:16946933-16947013 5.11e-05 31_[+1(3.45e-05)]_41 chrM:9239-9319 9.87e-01 80 chrV:6709187-6709267 4.58e-02 52_[+2(4.46e-05)]_20 chrI:7715563-7715643 1.07e-01 55_[+2(9.75e-05)]_17 chrIII:9868231-9868311 6.86e-02 80 chrII:4130216-4130296 9.37e-01 80 chrIII:4426777-4426857 8.09e-02 80 chrX:16928284-16928364 1.61e-04 1_[+5(1.23e-05)]_3_[+2(3.80e-05)]_\ 60 chrIII:931609-931689 9.46e-01 80 chrV:2673980-2674060 1.90e-01 80 chrIII:1202269-1202349 3.47e-02 4_[+3(7.70e-05)]_68 chrII:2570836-2570916 2.87e-01 58_[+3(5.18e-05)]_14 chrX:5686262-5686342 5.54e-02 80 chrIII:3916770-3916850 6.59e-05 39_[+1(1.42e-05)]_14_[+2(4.46e-05)]_\ 11 chrI:10474763-10474843 7.89e-01 80 chrX:5056376-5056456 9.45e-01 80 chrIII:12399898-12399978 5.36e-01 80 chrIII:1037316-1037396 5.48e-02 80 chrX:10435750-10435830 3.02e-01 80 chrIII:8417326-8417406 6.76e-04 26_[+1(3.45e-05)]_17_[+5(3.25e-05)]_\ 21 chrI:636818-636898 2.27e-03 15_[+2(8.18e-06)]_57 chrX:8386156-8386236 7.86e-01 80 chrIV:16776036-16776116 7.57e-01 80 chrI:3176557-3176637 2.13e-03 3_[+5(8.56e-05)]_69 chrIV:796715-796795 7.18e-01 80 chrI:11579749-11579829 6.50e-03 25_[+1(6.34e-06)]_47 chrIII:535390-535470 1.16e-01 56_[+5(4.75e-05)]_16 chrIV:5974350-5974430 3.03e-01 80 chrI:11505494-11505574 9.79e-01 80 chrI:9373017-9373097 4.63e-01 80 chrIII:7181947-7182027 1.11e-01 80 chrIV:3213559-3213639 7.20e-03 80 chrI:14651738-14651818 1.45e-02 36_[+1(3.45e-05)]_36 chrV:13962155-13962235 4.77e-05 52_[+4(6.05e-05)]_11_[+1(3.45e-05)]_\ 1 chrI:9268954-9269034 4.36e-03 4_[+5(3.25e-05)]_68 chrX:8646475-8646555 4.29e-02 80 chrV:4731536-4731616 3.43e-05 42_[+1(5.96e-05)]_13_[+2(4.46e-05)]_\ 9 chrIV:13777671-13777751 4.42e-02 80 chrII:2565045-2565125 5.24e-01 80 chrII:8128878-8128958 1.50e-01 80 chrI:1823158-1823238 7.99e-03 54_[+4(3.61e-05)]_18 chrIII:640566-640646 9.69e-01 80 chrX:5244215-5244295 2.62e-02 23_[+2(4.46e-05)]_49 chrIV:620497-620577 1.40e-02 38_[+5(1.23e-05)]_34 chrII:14143954-14144034 2.95e-01 80 chrIV:16865716-16865796 1.26e-03 [+1(6.92e-05)]_72 chrII:11959360-11959440 4.59e-02 68_[+5(9.81e-05)]_4 chrX:14804814-14804894 1.19e-01 80 chrI:6215547-6215627 4.86e-01 80 chrI:5608933-5609013 1.66e-01 80 chrV:1003953-1004033 9.45e-01 80 chrX:9622808-9622888 1.32e-02 30_[+5(8.56e-05)]_42 chrIV:12268660-12268740 8.56e-01 80 chrIV:393539-393619 7.46e-01 80 chrIV:7947062-7947142 6.66e-01 80 chrIV:2033174-2033254 8.60e-02 80 chrI:7094972-7095052 1.74e-01 80 chrIV:1388267-1388347 6.80e-02 80 chrI:6091083-6091163 3.79e-03 80 chrIV:11310756-11310836 4.18e-03 38_[+1(2.07e-05)]_34 chrX:13598035-13598115 4.49e-01 80 chrII:6898221-6898301 4.29e-02 80 chrI:488367-488447 3.75e-01 80 chrIII:3540576-3540656 2.80e-01 80 chrX:3348106-3348186 3.24e-01 80 chrI:853258-853338 5.19e-03 80 chrI:14721583-14721663 1.71e-03 35_[+2(4.46e-05)]_37 chrX:1858758-1858838 8.28e-02 80 chrM:4804-4884 8.64e-01 80 chrX:16604714-16604794 1.45e-02 20_[+5(8.56e-05)]_52 chrIII:12218862-12218942 8.37e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n01.farnam.hpc.yale.internal ********************************************************************************