******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/tlf-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:17273864-17273944 1.0000 80 chrII:11968419-11968499 1.0000 80 chrIV:8888682-8888762 1.0000 80 chrII:4471145-4471225 1.0000 80 chrI:3931904-3931984 1.0000 80 chrIII:10807388-10807468 1.0000 80 chrIV:11372703-11372783 1.0000 80 chrI:7554724-7554804 1.0000 80 chrI:519952-520032 1.0000 80 chrIV:7548258-7548338 1.0000 80 chrII:14247404-14247484 1.0000 80 chrI:14734822-14734902 1.0000 80 chrIV:11337150-11337230 1.0000 80 chrI:128345-128425 1.0000 80 chrI:3866591-3866671 1.0000 80 chrIV:13512330-13512410 1.0000 80 chrI:6282554-6282634 1.0000 80 chrIV:5469896-5469976 1.0000 80 chrII:5377680-5377760 1.0000 80 chrIV:7796880-7796960 1.0000 80 chrV:8413800-8413880 1.0000 80 chrI:4114607-4114687 1.0000 80 chrIV:9741294-9741374 1.0000 80 chrII:7880535-7880615 1.0000 80 chrI:4765580-4765660 1.0000 80 chrI:3368637-3368717 1.0000 80 chrV:3578964-3579044 1.0000 80 chrX:10338951-10339031 1.0000 80 chrI:3198984-3199064 1.0000 80 chrIII:11869503-11869583 1.0000 80 chrII:7664001-7664081 1.0000 80 chrV:14457236-14457316 1.0000 80 chrI:5274276-5274356 1.0000 80 chrI:6513880-6513960 1.0000 80 chrI:12919737-12919817 1.0000 80 chrIV:9589235-9589315 1.0000 80 chrIII:7104174-7104254 1.0000 80 chrV:1152927-1153007 1.0000 80 chrV:4890165-4890245 1.0000 80 chrV:12004705-12004785 1.0000 80 chrIV:13353401-13353481 1.0000 80 chrV:5717388-5717468 1.0000 80 chrII:12284221-12284301 1.0000 80 chrIV:6421358-6421438 1.0000 80 chrI:6565977-6566057 1.0000 80 chrIII:5727965-5728045 1.0000 80 chrII:10935511-10935591 1.0000 80 chrIV:9778202-9778282 1.0000 80 chrII:11578063-11578143 1.0000 80 chrV:14835505-14835585 1.0000 80 chrV:9382703-9382783 1.0000 80 chrI:13310762-13310842 1.0000 80 chrX:6533141-6533221 1.0000 80 chrIII:13302666-13302746 1.0000 80 chrV:11817419-11817499 1.0000 80 chrI:10184426-10184506 1.0000 80 chrIII:4489089-4489169 1.0000 80 chrIV:7477858-7477938 1.0000 80 chrIII:2946801-2946881 1.0000 80 chrII:9939028-9939108 1.0000 80 chrIV:2783359-2783439 1.0000 80 chrIV:10177967-10178047 1.0000 80 chrIII:5181473-5181553 1.0000 80 chrIII:9617105-9617185 1.0000 80 chrIII:5663679-5663759 1.0000 80 chrII:8187646-8187726 1.0000 80 chrI:7238845-7238925 1.0000 80 chrV:13309959-13310039 1.0000 80 chrII:12739467-12739547 1.0000 80 chrV:8629028-8629108 1.0000 80 chrIII:9615227-9615307 1.0000 80 chrIII:3390309-3390389 1.0000 80 chrV:6593880-6593960 1.0000 80 chrIII:4984823-4984903 1.0000 80 chrIII:10877702-10877782 1.0000 80 chrII:14245065-14245145 1.0000 80 chrII:14753969-14754049 1.0000 80 chrIV:3609051-3609131 1.0000 80 chrIII:7178613-7178693 1.0000 80 chrV:775067-775147 1.0000 80 chrV:15397298-15397378 1.0000 80 chrI:6855604-6855684 1.0000 80 chrIII:4176326-4176406 1.0000 80 chrIV:13369327-13369407 1.0000 80 chrII:7877957-7878037 1.0000 80 chrV:4175764-4175844 1.0000 80 chrII:10393825-10393905 1.0000 80 chrIII:10351837-10351917 1.0000 80 chrII:10560697-10560777 1.0000 80 chrIV:2709765-2709845 1.0000 80 chrI:6558777-6558857 1.0000 80 chrV:13312426-13312506 1.0000 80 chrI:8487397-8487477 1.0000 80 chrIII:10740759-10740839 1.0000 80 chrIII:6442620-6442700 1.0000 80 chrIII:10600408-10600488 1.0000 80 chrIV:2111597-2111677 1.0000 80 chrI:9622448-9622528 1.0000 80 chrII:8326746-8326826 1.0000 80 chrI:2304318-2304398 1.0000 80 chrIV:4760822-4760902 1.0000 80 chrI:8328878-8328958 1.0000 80 chrI:5113915-5113995 1.0000 80 chrIV:7958256-7958336 1.0000 80 chrV:4755464-4755544 1.0000 80 chrIV:7925184-7925264 1.0000 80 chrV:2731247-2731327 1.0000 80 chrIV:1277270-1277350 1.0000 80 chrIII:7180757-7180837 1.0000 80 chrIII:5321966-5322046 1.0000 80 chrV:6783253-6783333 1.0000 80 chrII:8273247-8273327 1.0000 80 chrI:2418164-2418244 1.0000 80 chrV:20267233-20267313 1.0000 80 chrIV:8286479-8286559 1.0000 80 chrI:5619290-5619370 1.0000 80 chrV:15184291-15184371 1.0000 80 chrIV:428911-428991 1.0000 80 chrI:7307132-7307212 1.0000 80 chrIII:5448342-5448422 1.0000 80 chrIV:9989456-9989536 1.0000 80 chrII:11972372-11972452 1.0000 80 chrII:8456875-8456955 1.0000 80 chrI:1341277-1341357 1.0000 80 chrIII:7102009-7102089 1.0000 80 chrIII:5939249-5939329 1.0000 80 chrIII:9824720-9824800 1.0000 80 chrIII:7855601-7855681 1.0000 80 chrII:7037760-7037840 1.0000 80 chrI:8582128-8582208 1.0000 80 chrII:10546437-10546517 1.0000 80 chrIV:9368052-9368132 1.0000 80 chrIV:11479241-11479321 1.0000 80 chrV:14992850-14992930 1.0000 80 chrIII:13346969-13347049 1.0000 80 chrII:9502099-9502179 1.0000 80 chrIII:9393430-9393510 1.0000 80 chrIV:13450939-13451019 1.0000 80 chrIV:9739233-9739313 1.0000 80 chrI:10331801-10331881 1.0000 80 chrII:582243-582323 1.0000 80 chrX:3408728-3408808 1.0000 80 chrIII:9228903-9228983 1.0000 80 chrIV:9196420-9196500 1.0000 80 chrV:8415210-8415290 1.0000 80 chrV:16745038-16745118 1.0000 80 chrIII:10506046-10506126 1.0000 80 chrIII:5719942-5720022 1.0000 80 chrIII:8101092-8101172 1.0000 80 chrIV:3212072-3212152 1.0000 80 chrIV:11377603-11377683 1.0000 80 chrIII:12426759-12426839 1.0000 80 chrI:9624764-9624844 1.0000 80 chrI:7056615-7056695 1.0000 80 chrIII:5083464-5083544 1.0000 80 chrII:42084-42164 1.0000 80 chrI:1153338-1153418 1.0000 80 chrII:9741548-9741628 1.0000 80 chrIII:5705394-5705474 1.0000 80 chrII:4229327-4229407 1.0000 80 chrIII:10354723-10354803 1.0000 80 chrI:10570120-10570200 1.0000 80 chrIII:9060335-9060415 1.0000 80 chrI:11580304-11580384 1.0000 80 chrIII:5714881-5714961 1.0000 80 chrIII:6969964-6970044 1.0000 80 chrV:4891494-4891574 1.0000 80 chrI:9512347-9512427 1.0000 80 chrI:7857691-7857771 1.0000 80 chrIII:5876418-5876498 1.0000 80 chrII:14866853-14866933 1.0000 80 chrIII:8129440-8129520 1.0000 80 chrIV:9438915-9438995 1.0000 80 chrIII:6164640-6164720 1.0000 80 chrIV:2607633-2607713 1.0000 80 chrIV:14072182-14072262 1.0000 80 chrII:6559202-6559282 1.0000 80 chrV:10813545-10813625 1.0000 80 chrV:14832820-14832900 1.0000 80 chrII:9056352-9056432 1.0000 80 chrIV:7782305-7782385 1.0000 80 chrII:9523713-9523793 1.0000 80 chrI:10436989-10437069 1.0000 80 chrI:5818220-5818300 1.0000 80 chrV:10023226-10023306 1.0000 80 chrI:5103448-5103528 1.0000 80 chrI:11909208-11909288 1.0000 80 chrIII:13299150-13299230 1.0000 80 chrII:13732305-13732385 1.0000 80 chrI:8839252-8839332 1.0000 80 chrIV:15530567-15530647 1.0000 80 chrIV:2388114-2388194 1.0000 80 chrI:7895388-7895468 1.0000 80 chrX:6609372-6609452 1.0000 80 chrII:11596492-11596572 1.0000 80 chrIII:7209840-7209920 1.0000 80 chrV:14034016-14034096 1.0000 80 chrII:4703169-4703249 1.0000 80 chrV:13567138-13567218 1.0000 80 chrV:7775529-7775609 1.0000 80 chrV:9689465-9689545 1.0000 80 chrIV:4047802-4047882 1.0000 80 chrIV:10926736-10926816 1.0000 80 chrV:15395478-15395558 1.0000 80 chrIII:9782166-9782246 1.0000 80 chrIV:7488650-7488730 1.0000 80 chrII:11782675-11782755 1.0000 80 chrI:9287205-9287285 1.0000 80 chrI:6563707-6563787 1.0000 80 chrIV:4389052-4389132 1.0000 80 chrIV:5850976-5851056 1.0000 80 chrII:8037868-8037948 1.0000 80 chrI:14720349-14720429 1.0000 80 chrI:13652711-13652791 1.0000 80 chrV:16919870-16919950 1.0000 80 chrIV:7800529-7800609 1.0000 80 chrIV:4748913-4748993 1.0000 80 chrI:347224-347304 1.0000 80 chrII:12994197-12994277 1.0000 80 chrV:2067573-2067653 1.0000 80 chrIII:3902799-3902879 1.0000 80 chrV:13624425-13624505 1.0000 80 chrX:14500808-14500888 1.0000 80 chrV:11889745-11889825 1.0000 80 chrV:15059656-15059736 1.0000 80 chrI:10552993-10553073 1.0000 80 chrII:8020710-8020790 1.0000 80 chrV:12192355-12192435 1.0000 80 chrV:7142758-7142838 1.0000 80 chrII:6587638-6587718 1.0000 80 chrII:11149958-11150038 1.0000 80 chrV:6278395-6278475 1.0000 80 chrII:8933878-8933958 1.0000 80 chrIII:5551006-5551086 1.0000 80 chrIII:6374188-6374268 1.0000 80 chrII:11917713-11917793 1.0000 80 chrI:13658034-13658114 1.0000 80 chrI:3269134-3269214 1.0000 80 chrIII:9408461-9408541 1.0000 80 chrI:2830691-2830771 1.0000 80 chrI:9226646-9226726 1.0000 80 chrX:3567050-3567130 1.0000 80 chrI:2584161-2584241 1.0000 80 chrIII:9748778-9748858 1.0000 80 chrI:4597689-4597769 1.0000 80 chrII:9738988-9739068 1.0000 80 chrV:17859260-17859340 1.0000 80 chrIV:653314-653394 1.0000 80 chrI:3163844-3163924 1.0000 80 chrI:1157489-1157569 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_tlf-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/tlf-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.299 C 0.203 G 0.196 T 0.302 Background letter frequencies (from file dataset with add-one prior applied): A 0.299 C 0.203 G 0.196 T 0.302 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SGCGCGMA MEME-1 width = 8 sites = 64 llr = 549 E-value = 2.2e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCGCGMA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::266 pos.-specific C 5:a:8:3: probability G 4a:a38:3 matrix T ::::::11 bits 2.3 *** 2.1 *** 1.9 *** 1.6 *** * Relative 1.4 ***** Entropy 1.2 ***** (12.4 bits) 0.9 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGAA consensus G G CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGMA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8933878-8933958 22 5.63e-06 AAACTACCAT CGCGCGAA CGCGTACGCG chrII:11782675-11782755 62 5.63e-06 AAAATCGAAA CGCGCGAA AAAATTAATT chrI:5619290-5619370 7 5.63e-06 AAACAC CGCGCGAA GTTAGATGTG chrI:5113915-5113995 39 5.63e-06 GAGACATTCG CGCGCGAA GAATTAATTT chrII:11578063-11578143 37 5.63e-06 GATGGTAGCG CGCGCGAA CATATCGAAC chrIV:6421358-6421438 70 5.63e-06 GTTTTAAAAA CGCGCGAA TTT chrV:4890165-4890245 7 5.63e-06 GCAAAA CGCGCGAA AAAGTGAATT chrV:17859260-17859340 63 1.49e-05 ATGGGAAAAA GGCGCGAA AAATGTTTTG chrIV:7477858-7477938 71 1.49e-05 GCAAATTTTA GGCGCGAA TT chrV:9382703-9382783 57 1.49e-05 ttcgcgacgt ggcgcgaa atatttcgaa chrIV:9778202-9778282 63 1.49e-05 ACCGTAATCG GGCGCGAA AGTATTCGAA chrV:3578964-3579044 45 1.49e-05 CGGTGTTGTT GGCGCGAA AATTTTGTTT chrI:3368637-3368717 57 1.49e-05 CTCAAATTTT CGCGCGCA AATTTGAAAA chrIV:9741294-9741374 50 1.49e-05 AAATATGCCG CGCGCGCA GCACTTTGAG chrIV:7796880-7796960 41 1.49e-05 CCGCCGCGGA GGCGCGAA ATTTTGATTT chrIV:5469896-5469976 72 1.49e-05 TTCATTTTAA GGCGCGAA T chrI:14734822-14734902 8 1.49e-05 catttgt ggcgcgaa atatctccta chrII:11968419-11968499 62 1.49e-05 TGAGGTAAAT GGCGCGAA TTTCGCTCAT chrII:10393825-10393905 53 1.86e-05 TTTGCTGGCG CGCGCGAG CGGCAATTTT chrI:6513880-6513960 58 1.86e-05 AAATCTTTTG CGCGCGAG TTTCTGAGTT chrIII:5876418-5876498 40 2.23e-05 AAATATTGTT GGCGCGCA GAGAACTGAA chrIII:10807388-10807468 28 2.23e-05 ATCTCAGGCG GGCGCGCA CGAATTCATA chrI:8839252-8839332 30 2.83e-05 ctcttcctgg cgcgcgcg cgctctctct chrIV:3212072-3212152 54 2.83e-05 TCTCcgcgcg cgcgcgcg cgcCGTTTTC chrIII:5448342-5448422 36 2.83e-05 TTTTTAGGTT GGCGCGAG TTTTTGCAAT chrV:14835505-14835585 54 2.83e-05 TTTCTCGTGG CGCGCGCG GAAAATTGAC chrII:12284221-12284301 53 2.83e-05 ATTTTTTGCG CGCGCGCG CGATTTTTCC chrI:4114607-4114687 52 2.83e-05 TTTTTTCTCG CGCGCGCG CGGCACAATT chrI:6282554-6282634 37 2.83e-05 CGGCTGTTCA CGCGCGCG CGGCTGCGCA chrIV:11337150-11337230 62 2.83e-05 AATTTTTTCG CGCGCGCG CGCCGTGAAT chrI:519952-520032 49 2.83e-05 GCACAACGTT CGCGCGCG CGCCGAAGTA chrIII:4984823-4984903 8 3.62e-05 TTCCGCA CGCGGGAA ATTCCCGTTT chrV:6593880-6593960 43 3.62e-05 AATCACCACG CGCGGGAA TCCGGCACTT chrII:7880535-7880615 70 3.62e-05 CCTCTTCACT CGCGGGAA ATC chrV:7142758-7142838 14 4.51e-05 CAGAGGTCAT CGCGGGCA ATTGGGAAAA chrIII:5663679-5663759 62 4.51e-05 cctatcgcat ggcgggaa attttttttg chrII:7664001-7664081 37 4.51e-05 AAGTTAGATC GGCGGGAA AAAACAATTT chrII:8037868-8037948 63 5.23e-05 TTCACCAATT GGCGGGCA CTGTTTAACT chrV:1152927-1153007 28 5.81e-05 AAAATTTTGC GGCGGGAG TTTTTGATTT chrIV:17273864-17273944 48 5.81e-05 TTTGTTGCGT CGCGGGCG ACCGCGACGC chrI:12919737-12919817 64 7.47e-05 TTCCATTTGA CGCGCAAA ATTTTCTGA chrIV:13512330-13512410 25 7.47e-05 CAAAATTTCC CGCGCAAA AACGAAATAA chrI:3866591-3866671 44 7.47e-05 CCCGCGCCCC CGCGCAAA AAATTTTGAA chrIII:9393430-9393510 10 8.41e-05 TTGTTTTTT CGCGCGCT CTCAACTTCT chrII:12739467-12739547 21 8.41e-05 AATTTTTTTG CGCGCGCT CACAAGCCAT chrIII:5727965-5728045 15 8.41e-05 AAATTTTCAA GGCGCGAT TATGATTTTC chrI:3198984-3199064 37 8.98e-05 CTATCGACTT CGCGCGTA AATCGATAAC chrIII:4489089-4489169 7 1.13e-04 AAATAT CGCGCAAG CACGCGAAAC chrIV:2607633-2607713 18 1.31e-04 TTAAAAAATA AGCGCGAA AATCAATTAA chrIII:8101092-8101172 52 1.31e-04 CTTTTTCATC GGCGCGTA AATCGACACA chrI:3931904-3931984 58 1.31e-04 ATTTTGGAAG AGCGCGAA ATTTTGTATT chrI:7056615-7056695 35 1.40e-04 tatctttaaa ggcgcaca cctttctgcT chrIII:10351837-10351917 57 1.40e-04 AACCGAAAAA CGCGCGTG TTTTCCGCAT chrV:4175764-4175844 20 1.40e-04 TTTCTTTAAA GGCGCACA AATCAAAACA chrI:11580304-11580384 34 1.67e-04 GTGAGGTCCT GGCGCGAC AGGGCCCGAA chrII:7037760-7037840 58 1.88e-04 TCGGCGAATT CGCGGAAA AAATTTAAAC chrI:128345-128425 62 1.99e-04 TGGTTCTTTT GGCGGGAT TTTTCGGATT chrIII:10600408-10600488 31 2.22e-04 AAAATTATCT GGCGGAAA ACTGTTTTTT chrIII:9617105-9617185 61 2.31e-04 CTTCCGCTTG CGCGGAAG GCGATTATTC chrV:4755464-4755544 50 2.48e-04 CAGTGTTCAC AGCGGGAA AAGATAGATA chrIII:6442620-6442700 51 2.86e-04 TGCAACTTTG AGCGGGCA AAATTTTTAC chrV:13312426-13312506 63 2.86e-04 ATTCTGTCGT GGCGGGAC GCGGAGCCAG chrII:9523713-9523793 72 3.21e-04 GAGGCGCGGC GGCGCAAT T chrIII:5939249-5939329 33 3.47e-04 TACCATGAAA GGCGCGTT CGCATTCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGMA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8933878-8933958 5.6e-06 21_[+1]_51 chrII:11782675-11782755 5.6e-06 61_[+1]_11 chrI:5619290-5619370 5.6e-06 6_[+1]_66 chrI:5113915-5113995 5.6e-06 38_[+1]_34 chrII:11578063-11578143 5.6e-06 36_[+1]_36 chrIV:6421358-6421438 5.6e-06 69_[+1]_3 chrV:4890165-4890245 5.6e-06 6_[+1]_66 chrV:17859260-17859340 1.5e-05 62_[+1]_10 chrIV:7477858-7477938 1.5e-05 70_[+1]_2 chrV:9382703-9382783 1.5e-05 56_[+1]_16 chrIV:9778202-9778282 1.5e-05 62_[+1]_10 chrV:3578964-3579044 1.5e-05 44_[+1]_28 chrI:3368637-3368717 1.5e-05 56_[+1]_16 chrIV:9741294-9741374 1.5e-05 49_[+1]_23 chrIV:7796880-7796960 1.5e-05 40_[+1]_32 chrIV:5469896-5469976 1.5e-05 71_[+1]_1 chrI:14734822-14734902 1.5e-05 7_[+1]_65 chrII:11968419-11968499 1.5e-05 61_[+1]_11 chrII:10393825-10393905 1.9e-05 52_[+1]_20 chrI:6513880-6513960 1.9e-05 57_[+1]_15 chrIII:5876418-5876498 2.2e-05 39_[+1]_33 chrIII:10807388-10807468 2.2e-05 27_[+1]_45 chrI:8839252-8839332 2.8e-05 29_[+1]_43 chrIV:3212072-3212152 2.8e-05 53_[+1]_19 chrIII:5448342-5448422 2.8e-05 35_[+1]_37 chrV:14835505-14835585 2.8e-05 53_[+1]_19 chrII:12284221-12284301 2.8e-05 52_[+1]_20 chrI:4114607-4114687 2.8e-05 51_[+1]_21 chrI:6282554-6282634 2.8e-05 36_[+1]_36 chrIV:11337150-11337230 2.8e-05 61_[+1]_11 chrI:519952-520032 2.8e-05 48_[+1]_24 chrIII:4984823-4984903 3.6e-05 7_[+1]_65 chrV:6593880-6593960 3.6e-05 42_[+1]_30 chrII:7880535-7880615 3.6e-05 69_[+1]_3 chrV:7142758-7142838 4.5e-05 13_[+1]_59 chrIII:5663679-5663759 4.5e-05 61_[+1]_11 chrII:7664001-7664081 4.5e-05 36_[+1]_36 chrII:8037868-8037948 5.2e-05 62_[+1]_10 chrV:1152927-1153007 5.8e-05 27_[+1]_45 chrIV:17273864-17273944 5.8e-05 47_[+1]_25 chrI:12919737-12919817 7.5e-05 63_[+1]_9 chrIV:13512330-13512410 7.5e-05 24_[+1]_48 chrI:3866591-3866671 7.5e-05 43_[+1]_29 chrIII:9393430-9393510 8.4e-05 9_[+1]_63 chrII:12739467-12739547 8.4e-05 20_[+1]_52 chrIII:5727965-5728045 8.4e-05 14_[+1]_58 chrI:3198984-3199064 9e-05 36_[+1]_36 chrIII:4489089-4489169 0.00011 6_[+1]_66 chrIV:2607633-2607713 0.00013 17_[+1]_55 chrIII:8101092-8101172 0.00013 51_[+1]_21 chrI:3931904-3931984 0.00013 57_[+1]_15 chrI:7056615-7056695 0.00014 34_[+1]_38 chrIII:10351837-10351917 0.00014 56_[+1]_16 chrV:4175764-4175844 0.00014 19_[+1]_53 chrI:11580304-11580384 0.00017 33_[+1]_39 chrII:7037760-7037840 0.00019 57_[+1]_15 chrI:128345-128425 0.0002 61_[+1]_11 chrIII:10600408-10600488 0.00022 30_[+1]_42 chrIII:9617105-9617185 0.00023 60_[+1]_12 chrV:4755464-4755544 0.00025 49_[+1]_23 chrIII:6442620-6442700 0.00029 50_[+1]_22 chrV:13312426-13312506 0.00029 62_[+1]_10 chrII:9523713-9523793 0.00032 71_[+1]_1 chrIII:5939249-5939329 0.00035 32_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGMA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCGCGMA width=8 seqs=64 chrII:8933878-8933958 ( 22) CGCGCGAA 1 chrII:11782675-11782755 ( 62) CGCGCGAA 1 chrI:5619290-5619370 ( 7) CGCGCGAA 1 chrI:5113915-5113995 ( 39) CGCGCGAA 1 chrII:11578063-11578143 ( 37) CGCGCGAA 1 chrIV:6421358-6421438 ( 70) CGCGCGAA 1 chrV:4890165-4890245 ( 7) CGCGCGAA 1 chrV:17859260-17859340 ( 63) GGCGCGAA 1 chrIV:7477858-7477938 ( 71) GGCGCGAA 1 chrV:9382703-9382783 ( 57) GGCGCGAA 1 chrIV:9778202-9778282 ( 63) GGCGCGAA 1 chrV:3578964-3579044 ( 45) GGCGCGAA 1 chrI:3368637-3368717 ( 57) CGCGCGCA 1 chrIV:9741294-9741374 ( 50) CGCGCGCA 1 chrIV:7796880-7796960 ( 41) GGCGCGAA 1 chrIV:5469896-5469976 ( 72) GGCGCGAA 1 chrI:14734822-14734902 ( 8) GGCGCGAA 1 chrII:11968419-11968499 ( 62) GGCGCGAA 1 chrII:10393825-10393905 ( 53) CGCGCGAG 1 chrI:6513880-6513960 ( 58) CGCGCGAG 1 chrIII:5876418-5876498 ( 40) GGCGCGCA 1 chrIII:10807388-10807468 ( 28) GGCGCGCA 1 chrI:8839252-8839332 ( 30) CGCGCGCG 1 chrIV:3212072-3212152 ( 54) CGCGCGCG 1 chrIII:5448342-5448422 ( 36) GGCGCGAG 1 chrV:14835505-14835585 ( 54) CGCGCGCG 1 chrII:12284221-12284301 ( 53) CGCGCGCG 1 chrI:4114607-4114687 ( 52) CGCGCGCG 1 chrI:6282554-6282634 ( 37) CGCGCGCG 1 chrIV:11337150-11337230 ( 62) CGCGCGCG 1 chrI:519952-520032 ( 49) CGCGCGCG 1 chrIII:4984823-4984903 ( 8) CGCGGGAA 1 chrV:6593880-6593960 ( 43) CGCGGGAA 1 chrII:7880535-7880615 ( 70) CGCGGGAA 1 chrV:7142758-7142838 ( 14) CGCGGGCA 1 chrIII:5663679-5663759 ( 62) GGCGGGAA 1 chrII:7664001-7664081 ( 37) GGCGGGAA 1 chrII:8037868-8037948 ( 63) GGCGGGCA 1 chrV:1152927-1153007 ( 28) GGCGGGAG 1 chrIV:17273864-17273944 ( 48) CGCGGGCG 1 chrI:12919737-12919817 ( 64) CGCGCAAA 1 chrIV:13512330-13512410 ( 25) CGCGCAAA 1 chrI:3866591-3866671 ( 44) CGCGCAAA 1 chrIII:9393430-9393510 ( 10) CGCGCGCT 1 chrII:12739467-12739547 ( 21) CGCGCGCT 1 chrIII:5727965-5728045 ( 15) GGCGCGAT 1 chrI:3198984-3199064 ( 37) CGCGCGTA 1 chrIII:4489089-4489169 ( 7) CGCGCAAG 1 chrIV:2607633-2607713 ( 18) AGCGCGAA 1 chrIII:8101092-8101172 ( 52) GGCGCGTA 1 chrI:3931904-3931984 ( 58) AGCGCGAA 1 chrI:7056615-7056695 ( 35) GGCGCACA 1 chrIII:10351837-10351917 ( 57) CGCGCGTG 1 chrV:4175764-4175844 ( 20) GGCGCACA 1 chrI:11580304-11580384 ( 34) GGCGCGAC 1 chrII:7037760-7037840 ( 58) CGCGGAAA 1 chrI:128345-128425 ( 62) GGCGGGAT 1 chrIII:10600408-10600488 ( 31) GGCGGAAA 1 chrIII:9617105-9617185 ( 61) CGCGGAAG 1 chrV:4755464-4755544 ( 50) AGCGGGAA 1 chrIII:6442620-6442700 ( 51) AGCGGGCA 1 chrV:13312426-13312506 ( 63) GGCGGGAC 1 chrII:9523713-9523793 ( 72) GGCGCAAT 1 chrIII:5939249-5939329 ( 33) GGCGCGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGMA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.89106 E= 2.2e-040 -226 139 105 -1264 -1264 -1264 235 -1264 -1264 230 -1264 -1264 -1264 -1264 235 -1264 -1264 189 35 -1264 -93 -1264 210 -1264 106 62 -1264 -227 106 -270 35 -169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGMA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 2.2e-040 0.062500 0.531250 0.406250 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.156250 0.000000 0.843750 0.000000 0.625000 0.312500 0.000000 0.062500 0.625000 0.031250 0.250000 0.093750 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCGMA MEME-1 regular expression -------------------------------------------------------------------------------- [CG]GCG[CG]G[AC][AG] -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TACVGTAS MEME-2 width = 8 sites = 51 llr = 413 E-value = 1.2e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TACVGTAS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9:2::a2 pos.-specific C ::a4:::3 probability G 11:2a::5 matrix T 9::2:a:1 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * *** Relative 1.4 *** *** Entropy 1.2 *** *** (11.7 bits) 0.9 *** *** 0.7 *** *** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel TACCGTAG consensus G C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACVGTAS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9523713-9523793 24 1.29e-05 TCTCTACGAA TACCGTAG TCACTTGGTT chrIV:2607633-2607713 49 1.29e-05 CTCAACTAAT TACCGTAG TGATTTAAAG chrI:13310762-13310842 38 1.29e-05 ATTTCAACTC TACCGTAG CCCGGTTACT chrI:14734822-14734902 34 1.29e-05 tagcgaTGTC TACCGTAG TATTGAATAA chrII:11968419-11968499 18 1.29e-05 TCACCACGAC TACCGTAG CCCGTGGAGC chrII:11596492-11596572 57 2.54e-05 CCTTTAAGTA TACGGTAG GTGAGAATCC chrI:5818220-5818300 51 2.54e-05 AACAAAGAAC TACGGTAG TCGATCATAC chrI:12919737-12919817 14 2.54e-05 TAGCTAAGAG TACGGTAG TCGCCTAAGT chrII:14247404-14247484 32 2.54e-05 TCCGGGGGTA TACGGTAG TAGCACTTTT chrI:519952-520032 65 2.54e-05 CGCGCCGAAG TACGGTAG GTCCCGCA chrII:11782675-11782755 8 3.87e-05 TTCCAAT TACCGTAC CCAGTTAGCG chrIV:3212072-3212152 30 3.87e-05 TGTTCCAATC TACCGTAC CCCTAGTCTC chrIV:4760822-4760902 44 3.87e-05 TTCTCAAGAC TACCGTAC TCTTTAAAGA chrI:9622448-9622528 2 3.87e-05 A TACCGTAC CGTATCAGTT chrIV:13353401-13353481 5 3.87e-05 CGTA TACCGTAC TCCGTTTGTT chrV:3578964-3579044 24 3.87e-05 CGTACTCGCC TACCGTAC CCTCGGTGTT chrI:7554724-7554804 6 3.87e-05 ATGAC TACCGTAC TACTTCAAGA chrI:3931904-3931984 13 3.87e-05 CATTATCTTT TACCGTAC CTTTGATCTT chrIV:1277270-1277350 44 7.07e-05 CCCGGCGTGG TACAGTAG TTCTCAGATT chrII:14245065-14245145 54 7.07e-05 CCTTTAAATT TACAGTAG GAAATCGCAG chrIII:3390309-3390389 24 7.07e-05 CCTTTAAATT TACAGTAG GAAAATTAGA chrIII:5663679-5663759 29 7.07e-05 AACAGATGGG TACGGTAC GCATtcgcgg chrI:9287205-9287285 48 8.99e-05 CTTTTATGGG TACTGTAG TGGGGGTGTG chrIV:9368052-9368132 54 8.99e-05 ctttaaagag tactgtag tttcaaactt chrI:5619290-5619370 38 8.99e-05 GTTACCGGGT TACTGTAG TACGGGACCC chrI:5113915-5113995 16 8.99e-05 GTTTCGGGAA TACTGTAG TCGAAGAGAC chrII:12739467-12739547 66 8.99e-05 TTTTCCTGGC TACTGTAG TTCACAA chrI:3198984-3199064 72 8.99e-05 ACAAAAGTCT TACTGTAG G chrIV:13512330-13512410 45 8.99e-05 CGAAATAAAG TACTGTAG AATTTAAAGG chrI:7056615-7056695 2 1.29e-04 T TACAGTAC TCCCCaagta chrIII:2946801-2946881 53 1.29e-04 CTATTTTAAA TACCGTAA CCCAAAGGCG chrII:10935511-10935591 42 1.29e-04 acccaaatgg taccgtaa tccgtttaaa chrIV:6421358-6421438 16 1.29e-04 CTTAAAATTC TACAGTAC TTTATTTCAT chrI:6513880-6513960 22 1.29e-04 GTTCGTCCTC TACAGTAC TCCCGCGCGG chrIV:2783359-2783439 73 1.49e-04 CTTTAAAGCT TACTGTAC chrI:5103448-5103528 14 1.68e-04 CATTCACGTG TACGGTAA TGACCTTAAA chrI:9512347-9512427 70 1.68e-04 AATTGTTGAC TACGGTAA TCC chrIII:9228903-9228983 62 1.68e-04 tttgaaagag tacggtaa tttTTTAAAG chrV:2067573-2067653 13 2.14e-04 acaaaaaaaT TACAGTAA CCTTCTTGCA chrII:12994197-12994277 62 2.14e-04 CCCTAATTAG TACAGTAA GCCGGCAATA chrIII:7102009-7102089 33 2.14e-04 AAAGATCATC TACAGTAA TCACCCAGCA chrIII:4489089-4489169 49 2.14e-04 TTTTCGCAGC GACCGTAG CTAATTTTAT chrV:5717388-5717468 70 2.14e-04 TGCAGGTTCT TACAGTAA CCC chrIV:8888682-8888762 28 2.14e-04 AAAACAGTGC GACCGTAG TTTATGCCCC chrII:7880535-7880615 52 2.34e-04 GCGCCTTTAA TACCGTAT CCTCTTCACT chrX:14500808-14500888 69 2.79e-04 TTGAATGGCA TGCGGTAG ACGG chrI:3269134-3269214 47 2.97e-04 ACTGTTTAAT TGCCGTAC CCTTTGTTTA chrV:15395478-15395558 2 2.97e-04 C GACCGTAC TCCGAGGCAT chrV:14457236-14457316 65 3.16e-04 AAAGAAGTAG TACGGTAT GCAATGGT chrI:3866591-3866671 15 3.16e-04 GTATCAAGTG TACGGTAT TCGTGGTGAG chrIV:11372703-11372783 70 3.58e-04 CATGTAAAAG TGCAGTAG ATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACVGTAS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9523713-9523793 1.3e-05 23_[+2]_49 chrIV:2607633-2607713 1.3e-05 48_[+2]_24 chrI:13310762-13310842 1.3e-05 37_[+2]_35 chrI:14734822-14734902 1.3e-05 33_[+2]_39 chrII:11968419-11968499 1.3e-05 17_[+2]_55 chrII:11596492-11596572 2.5e-05 56_[+2]_16 chrI:5818220-5818300 2.5e-05 50_[+2]_22 chrI:12919737-12919817 2.5e-05 13_[+2]_59 chrII:14247404-14247484 2.5e-05 31_[+2]_41 chrI:519952-520032 2.5e-05 64_[+2]_8 chrII:11782675-11782755 3.9e-05 7_[+2]_65 chrIV:3212072-3212152 3.9e-05 29_[+2]_43 chrIV:4760822-4760902 3.9e-05 43_[+2]_29 chrI:9622448-9622528 3.9e-05 1_[+2]_71 chrIV:13353401-13353481 3.9e-05 4_[+2]_68 chrV:3578964-3579044 3.9e-05 23_[+2]_49 chrI:7554724-7554804 3.9e-05 5_[+2]_67 chrI:3931904-3931984 3.9e-05 12_[+2]_60 chrIV:1277270-1277350 7.1e-05 43_[+2]_29 chrII:14245065-14245145 7.1e-05 53_[+2]_19 chrIII:3390309-3390389 7.1e-05 23_[+2]_49 chrIII:5663679-5663759 7.1e-05 28_[+2]_44 chrI:9287205-9287285 9e-05 47_[+2]_25 chrIV:9368052-9368132 9e-05 53_[+2]_19 chrI:5619290-5619370 9e-05 37_[+2]_35 chrI:5113915-5113995 9e-05 15_[+2]_57 chrII:12739467-12739547 9e-05 65_[+2]_7 chrI:3198984-3199064 9e-05 71_[+2]_1 chrIV:13512330-13512410 9e-05 44_[+2]_28 chrI:7056615-7056695 0.00013 1_[+2]_71 chrIII:2946801-2946881 0.00013 52_[+2]_20 chrII:10935511-10935591 0.00013 41_[+2]_31 chrIV:6421358-6421438 0.00013 15_[+2]_57 chrI:6513880-6513960 0.00013 21_[+2]_51 chrIV:2783359-2783439 0.00015 72_[+2] chrI:5103448-5103528 0.00017 13_[+2]_59 chrI:9512347-9512427 0.00017 69_[+2]_3 chrIII:9228903-9228983 0.00017 61_[+2]_11 chrV:2067573-2067653 0.00021 12_[+2]_60 chrII:12994197-12994277 0.00021 61_[+2]_11 chrIII:7102009-7102089 0.00021 32_[+2]_40 chrIII:4489089-4489169 0.00021 48_[+2]_24 chrV:5717388-5717468 0.00021 69_[+2]_3 chrIV:8888682-8888762 0.00021 27_[+2]_45 chrII:7880535-7880615 0.00023 51_[+2]_21 chrX:14500808-14500888 0.00028 68_[+2]_4 chrI:3269134-3269214 0.0003 46_[+2]_26 chrV:15395478-15395558 0.0003 1_[+2]_71 chrV:14457236-14457316 0.00032 64_[+2]_8 chrI:3866591-3866671 0.00032 14_[+2]_58 chrIV:11372703-11372783 0.00036 69_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACVGTAS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TACVGTAS width=8 seqs=51 chrII:9523713-9523793 ( 24) TACCGTAG 1 chrIV:2607633-2607713 ( 49) TACCGTAG 1 chrI:13310762-13310842 ( 38) TACCGTAG 1 chrI:14734822-14734902 ( 34) TACCGTAG 1 chrII:11968419-11968499 ( 18) TACCGTAG 1 chrII:11596492-11596572 ( 57) TACGGTAG 1 chrI:5818220-5818300 ( 51) TACGGTAG 1 chrI:12919737-12919817 ( 14) TACGGTAG 1 chrII:14247404-14247484 ( 32) TACGGTAG 1 chrI:519952-520032 ( 65) TACGGTAG 1 chrII:11782675-11782755 ( 8) TACCGTAC 1 chrIV:3212072-3212152 ( 30) TACCGTAC 1 chrIV:4760822-4760902 ( 44) TACCGTAC 1 chrI:9622448-9622528 ( 2) TACCGTAC 1 chrIV:13353401-13353481 ( 5) TACCGTAC 1 chrV:3578964-3579044 ( 24) TACCGTAC 1 chrI:7554724-7554804 ( 6) TACCGTAC 1 chrI:3931904-3931984 ( 13) TACCGTAC 1 chrIV:1277270-1277350 ( 44) TACAGTAG 1 chrII:14245065-14245145 ( 54) TACAGTAG 1 chrIII:3390309-3390389 ( 24) TACAGTAG 1 chrIII:5663679-5663759 ( 29) TACGGTAC 1 chrI:9287205-9287285 ( 48) TACTGTAG 1 chrIV:9368052-9368132 ( 54) TACTGTAG 1 chrI:5619290-5619370 ( 38) TACTGTAG 1 chrI:5113915-5113995 ( 16) TACTGTAG 1 chrII:12739467-12739547 ( 66) TACTGTAG 1 chrI:3198984-3199064 ( 72) TACTGTAG 1 chrIV:13512330-13512410 ( 45) TACTGTAG 1 chrI:7056615-7056695 ( 2) TACAGTAC 1 chrIII:2946801-2946881 ( 53) TACCGTAA 1 chrII:10935511-10935591 ( 42) TACCGTAA 1 chrIV:6421358-6421438 ( 16) TACAGTAC 1 chrI:6513880-6513960 ( 22) TACAGTAC 1 chrIV:2783359-2783439 ( 73) TACTGTAC 1 chrI:5103448-5103528 ( 14) TACGGTAA 1 chrI:9512347-9512427 ( 70) TACGGTAA 1 chrIII:9228903-9228983 ( 62) TACGGTAA 1 chrV:2067573-2067653 ( 13) TACAGTAA 1 chrII:12994197-12994277 ( 62) TACAGTAA 1 chrIII:7102009-7102089 ( 33) TACAGTAA 1 chrIII:4489089-4489169 ( 49) GACCGTAG 1 chrV:5717388-5717468 ( 70) TACAGTAA 1 chrIV:8888682-8888762 ( 28) GACCGTAG 1 chrII:7880535-7880615 ( 52) TACCGTAT 1 chrX:14500808-14500888 ( 69) TGCGGTAG 1 chrI:3269134-3269214 ( 47) TGCCGTAC 1 chrV:15395478-15395558 ( 2) GACCGTAC 1 chrV:14457236-14457316 ( 65) TACGGTAT 1 chrI:3866591-3866671 ( 15) TACGGTAT 1 chrIV:11372703-11372783 ( 70) TGCAGTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACVGTAS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.99089 E= 1.2e-013 -1232 -1232 -174 164 166 -1232 -174 -1232 -1232 230 -1232 -1232 -47 95 26 -95 -1232 -1232 235 -1232 -1232 -1232 -1232 173 174 -1232 -1232 -1232 -76 54 126 -236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACVGTAS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.2e-013 0.000000 0.000000 0.058824 0.941176 0.941176 0.000000 0.058824 0.000000 0.000000 1.000000 0.000000 0.000000 0.215686 0.392157 0.235294 0.156863 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.176471 0.294118 0.470588 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACVGTAS MEME-2 regular expression -------------------------------------------------------------------------------- TAC[CGA]GTA[GC] -------------------------------------------------------------------------------- Time 11.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCTTT MEME-3 width = 8 sites = 21 llr = 213 E-value = 3.1e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::11::: pos.-specific C :9:99::: probability G a:a::::: matrix T :1:::aaa bits 2.3 * * 2.1 * * 1.9 * * 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:2067573-2067653 39 8.85e-06 CAGTTCTCAT GCGCCTTT AGCCTTTCGT chrII:11596492-11596572 44 8.85e-06 AGACAGGTGT GCGCCTTT AAGTATACGG chrI:11580304-11580384 69 8.85e-06 ATAAAAGCGT GCGCCTTT AAAG chrIII:9228903-9228983 47 8.85e-06 ctttatgcgt gcgccttt gaaagagtac chrII:14753969-14754049 37 8.85e-06 AGATTAGTAT GCGCCTTT AAAACTTCTG chrII:14245065-14245145 41 8.85e-06 TTTTGCGTAT GCGCCTTT AAATTTACAG chrIII:10877702-10877782 73 8.85e-06 ATTCCGCTGT GCGCCTTT chrIII:3390309-3390389 11 8.85e-06 TATTGTGTAT GCGCCTTT AAATTTACAG chrIV:2783359-2783439 59 8.85e-06 TTCCTCATAT GCGCCTTT AAAGCTTACT chrIV:9589235-9589315 65 8.85e-06 AGTCTCTCAT GCGCCTTT AAAGGGGT chrV:14457236-14457316 47 8.85e-06 TTTGATGTGT GCGCCTTT AAAGAAGTAG chrII:7880535-7880615 42 8.85e-06 ATGCAGCCAT GCGCCTTT AATACCGTAT chrII:10560697-10560777 67 2.19e-05 GGGCCTTAGC GCGACTTT AGATAC chrIII:5727965-5728045 49 2.19e-05 TAGTCTTGAA GCGACTTT ACAAAACATC chrII:12284221-12284301 15 2.19e-05 GGGTCTCGCA GCGACTTT TCGAAAATCT chrI:9226646-9226726 38 3.51e-05 ACTAAGAAGT GTGCCTTT AAACTGCTAC chrV:10023226-10023306 59 3.51e-05 ATTTTTAAAT GTGCCTTT AATTAATTAA chrII:42084-42164 15 3.51e-05 TACACGAAAA GTGCCTTT GTGCCAAATA chrV:15059656-15059736 54 4.81e-05 GCCCAAATTC GCGCATTT CTCATTCAAA chrIII:5719942-5720022 69 4.81e-05 TCGATATCTA GCGCATTT CTCG chrV:4890165-4890245 35 5.66e-05 TTAAGAATTC GCGCGTTT TCGCCAGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:2067573-2067653 8.9e-06 38_[+3]_34 chrII:11596492-11596572 8.9e-06 43_[+3]_29 chrI:11580304-11580384 8.9e-06 68_[+3]_4 chrIII:9228903-9228983 8.9e-06 46_[+3]_26 chrII:14753969-14754049 8.9e-06 36_[+3]_36 chrII:14245065-14245145 8.9e-06 40_[+3]_32 chrIII:10877702-10877782 8.9e-06 72_[+3] chrIII:3390309-3390389 8.9e-06 10_[+3]_62 chrIV:2783359-2783439 8.9e-06 58_[+3]_14 chrIV:9589235-9589315 8.9e-06 64_[+3]_8 chrV:14457236-14457316 8.9e-06 46_[+3]_26 chrII:7880535-7880615 8.9e-06 41_[+3]_31 chrII:10560697-10560777 2.2e-05 66_[+3]_6 chrIII:5727965-5728045 2.2e-05 48_[+3]_24 chrII:12284221-12284301 2.2e-05 14_[+3]_58 chrI:9226646-9226726 3.5e-05 37_[+3]_35 chrV:10023226-10023306 3.5e-05 58_[+3]_14 chrII:42084-42164 3.5e-05 14_[+3]_58 chrV:15059656-15059736 4.8e-05 53_[+3]_19 chrIII:5719942-5720022 4.8e-05 68_[+3]_4 chrV:4890165-4890245 5.7e-05 34_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCTTT width=8 seqs=21 chrV:2067573-2067653 ( 39) GCGCCTTT 1 chrII:11596492-11596572 ( 44) GCGCCTTT 1 chrI:11580304-11580384 ( 69) GCGCCTTT 1 chrIII:9228903-9228983 ( 47) GCGCCTTT 1 chrII:14753969-14754049 ( 37) GCGCCTTT 1 chrII:14245065-14245145 ( 41) GCGCCTTT 1 chrIII:10877702-10877782 ( 73) GCGCCTTT 1 chrIII:3390309-3390389 ( 11) GCGCCTTT 1 chrIV:2783359-2783439 ( 59) GCGCCTTT 1 chrIV:9589235-9589315 ( 65) GCGCCTTT 1 chrV:14457236-14457316 ( 47) GCGCCTTT 1 chrII:7880535-7880615 ( 42) GCGCCTTT 1 chrII:10560697-10560777 ( 67) GCGACTTT 1 chrIII:5727965-5728045 ( 49) GCGACTTT 1 chrII:12284221-12284301 ( 15) GCGACTTT 1 chrI:9226646-9226726 ( 38) GTGCCTTT 1 chrV:10023226-10023306 ( 59) GTGCCTTT 1 chrII:42084-42164 ( 15) GTGCCTTT 1 chrV:15059656-15059736 ( 54) GCGCATTT 1 chrIII:5719942-5720022 ( 69) GCGCATTT 1 chrV:4890165-4890245 ( 35) GCGCGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.25601 E= 3.1e-009 -1104 -1104 235 -1104 -1104 208 -1104 -108 -1104 -1104 235 -1104 -106 208 -1104 -1104 -165 208 -204 -1104 -1104 -1104 -1104 173 -1104 -1104 -1104 173 -1104 -1104 -1104 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.1e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.095238 0.857143 0.047619 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCTTT MEME-3 regular expression -------------------------------------------------------------------------------- GCGCCTTT -------------------------------------------------------------------------------- Time 14.62 secs. ******************************************************************************** ******************************************************************************** MOTIF YCGCSRCG MEME-4 width = 8 sites = 24 llr = 219 E-value = 1.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCGCSRCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::6:: pos.-specific C 382a4:a: probability G :28:64:a matrix T 6::::::: bits 2.3 * ** 2.1 * ** 1.9 * ** 1.6 *** ** Relative 1.4 **** ** Entropy 1.2 **** ** (13.2 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGCGACG consensus CG CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCGCSRCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9738988-9739068 55 5.69e-06 CGTCGGCGGC TCGCGACG CGAACGACAT chrII:10393825-10393905 12 5.69e-06 ACCTCAGGTC TCGCGACG AATTTGACAA chrV:9382703-9382783 48 5.69e-06 ctggcgcatt tcgcgacg tggcgcgaaa chrIII:5663679-5663759 41 9.42e-06 CGGTACGCAT tcgcggcg agacctatcg chrII:8933878-8933958 3 1.32e-05 TC CCGCGACG AAAACTACCA chrV:10813545-10813625 72 1.32e-05 CCGTTATTTT CCGCGACG T chrIV:17273864-17273944 57 1.32e-05 TCGCGGGCGA CCGCGACG CGGCAAAATT chrI:9287205-9287285 29 2.16e-05 CATATGGGTC TCGCCACG ACTTTTATGG chrV:14832820-14832900 6 2.16e-05 GGGTC TCGCCACG ACTTGAATCA chrI:6513880-6513960 5 2.16e-05 GGTC TCGCCACG TTCGTCCTCT chrIII:5939249-5939329 1 2.95e-05 . CCGCCACG AAACCGCCAC chrIV:7796880-7796960 31 3.21e-05 CGCGCGGAAT CCGCCGCG GAGGCGCGAA chrIII:4984823-4984903 70 4.11e-05 AACACCAATT TGGCGGCG AAC chrIV:10177967-10178047 46 4.11e-05 ATTCGAGTAG TGGCGGCG GCTGCAGTTT chrI:5274276-5274356 60 4.11e-05 ATTCAAAAAA TGGCGGCG ATAATGTTCT chrII:11149958-11150038 47 5.64e-05 ACCAAACGGA TCCCGACG TCGAAGTATT chrV:13624425-13624505 48 5.64e-05 TCTGGCACAT CGGCGACG ACATTCTTCG chrIV:653314-653394 28 6.63e-05 TTTACCTGGA ACGCGGCG AACAGCTTCT chrIV:1277270-1277350 33 6.63e-05 ACAGAAAAAT TCCCGGCG TGGTACAGTA chrIV:5469896-5469976 40 6.63e-05 TGCATTTCTG TCCCGGCG GGAGAAATTG chrIV:4047802-4047882 60 7.60e-05 ATTGCTCCAT TGGCCACG CGGAGCGGTC chrV:2067573-2067653 69 9.81e-05 TGGGACCCTC ACGCCACG TGGC chrI:5103448-5103528 37 9.81e-05 TTAAAGGGAC ACGCCACG AATTTTTTTA chrIV:8888682-8888762 42 1.15e-04 GTAGTTTATG CCCCCGCG TAATATGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCGCSRCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9738988-9739068 5.7e-06 54_[+4]_18 chrII:10393825-10393905 5.7e-06 11_[+4]_61 chrV:9382703-9382783 5.7e-06 47_[+4]_25 chrIII:5663679-5663759 9.4e-06 40_[+4]_32 chrII:8933878-8933958 1.3e-05 2_[+4]_70 chrV:10813545-10813625 1.3e-05 71_[+4]_1 chrIV:17273864-17273944 1.3e-05 56_[+4]_16 chrI:9287205-9287285 2.2e-05 28_[+4]_44 chrV:14832820-14832900 2.2e-05 5_[+4]_67 chrI:6513880-6513960 2.2e-05 4_[+4]_68 chrIII:5939249-5939329 2.9e-05 [+4]_72 chrIV:7796880-7796960 3.2e-05 30_[+4]_42 chrIII:4984823-4984903 4.1e-05 69_[+4]_3 chrIV:10177967-10178047 4.1e-05 45_[+4]_27 chrI:5274276-5274356 4.1e-05 59_[+4]_13 chrII:11149958-11150038 5.6e-05 46_[+4]_26 chrV:13624425-13624505 5.6e-05 47_[+4]_25 chrIV:653314-653394 6.6e-05 27_[+4]_45 chrIV:1277270-1277350 6.6e-05 32_[+4]_40 chrIV:5469896-5469976 6.6e-05 39_[+4]_33 chrIV:4047802-4047882 7.6e-05 59_[+4]_13 chrV:2067573-2067653 9.8e-05 68_[+4]_4 chrI:5103448-5103528 9.8e-05 36_[+4]_36 chrIV:8888682-8888762 0.00012 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCGCSRCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCGCSRCG width=8 seqs=24 chrII:9738988-9739068 ( 55) TCGCGACG 1 chrII:10393825-10393905 ( 12) TCGCGACG 1 chrV:9382703-9382783 ( 48) TCGCGACG 1 chrIII:5663679-5663759 ( 41) TCGCGGCG 1 chrII:8933878-8933958 ( 3) CCGCGACG 1 chrV:10813545-10813625 ( 72) CCGCGACG 1 chrIV:17273864-17273944 ( 57) CCGCGACG 1 chrI:9287205-9287285 ( 29) TCGCCACG 1 chrV:14832820-14832900 ( 6) TCGCCACG 1 chrI:6513880-6513960 ( 5) TCGCCACG 1 chrIII:5939249-5939329 ( 1) CCGCCACG 1 chrIV:7796880-7796960 ( 31) CCGCCGCG 1 chrIII:4984823-4984903 ( 70) TGGCGGCG 1 chrIV:10177967-10178047 ( 46) TGGCGGCG 1 chrI:5274276-5274356 ( 60) TGGCGGCG 1 chrII:11149958-11150038 ( 47) TCCCGACG 1 chrV:13624425-13624505 ( 48) CGGCGACG 1 chrIV:653314-653394 ( 28) ACGCGGCG 1 chrIV:1277270-1277350 ( 33) TCCCGGCG 1 chrIV:5469896-5469976 ( 40) TCCCGGCG 1 chrIV:4047802-4047882 ( 60) TGGCCACG 1 chrV:2067573-2067653 ( 69) ACGCCACG 1 chrI:5103448-5103528 ( 37) ACGCCACG 1 chrIV:8888682-8888762 ( 42) CCCCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCGCSRCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.477 E= 1.7e-002 -126 52 -1123 95 -1123 197 9 -1123 -1123 -28 209 -1123 -1123 230 -1123 -1123 -1123 89 167 -1123 106 -1123 93 -1123 -1123 230 -1123 -1123 -1123 -1123 235 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCGCSRCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.7e-002 0.125000 0.291667 0.000000 0.583333 0.000000 0.791667 0.208333 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCGCSRCG MEME-4 regular expression -------------------------------------------------------------------------------- [TC][CG]GC[GC][AG]CG -------------------------------------------------------------------------------- Time 18.16 secs. ******************************************************************************** ******************************************************************************** MOTIF AAASGCGC MEME-5 width = 8 sites = 15 llr = 146 E-value = 8.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAASGCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 99a:::3: pos.-specific C :::5:a:a probability G 11:5a:7: matrix T :::::::: bits 2.3 ** * 2.1 ** * 1.9 ** * 1.6 * ** * Relative 1.4 ******* Entropy 1.2 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAACGCGC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASGCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:2388114-2388194 36 8.59e-06 TTTGTTCTGC AAACGCGC TCCGCTAGAC chrIII:5448342-5448422 56 8.59e-06 TTTGCAATGC AAACGCGC TCCACCGCAA chrIII:4489089-4489169 21 8.59e-06 CAAGCACGCG AAACGCGC CAGCAACAAT chrI:3269134-3269214 64 1.69e-05 CCCTTTGTTT AAAGGCGC AGAGGTTAA chrIV:2607633-2607713 63 1.69e-05 GTAGTGATTT AAAGGCGC ATGTCGTTAG chrIII:10877702-10877782 11 1.69e-05 CGGTAGTTTT AAAGGCGC ATGGCCGGGG chrIII:2946801-2946881 64 1.69e-05 ACCGTAACCC AAAGGCGC ATGCATTGA chrIV:13512330-13512410 58 1.69e-05 TGTAGAATTT AAAGGCGC ATGTCGACGC chrV:7142758-7142838 48 3.00e-05 AACCAGCAAT AAACGCAC CTCGGCAAAG chrIV:10926736-10926816 5 3.00e-05 TTAT AAACGCAC CTCAAAACAG chrII:11782675-11782755 25 3.56e-05 CCCAGTTAGC GAACGCGC TCCACTGCGA chrIV:7796880-7796960 18 3.56e-05 GTCTCGTAGC GAACGCGC GGAATCCGCC chrI:9622448-9622528 20 4.83e-05 CGTATCAGTT AAAGGCAC ACGCATGATG chrII:10935511-10935591 57 4.83e-05 taatccgttt aaaggcac agcctcttaa chrI:4765580-4765660 12 5.93e-05 AATTAAATGC AGACGCGC CCCAATGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASGCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:2388114-2388194 8.6e-06 35_[+5]_37 chrIII:5448342-5448422 8.6e-06 55_[+5]_17 chrIII:4489089-4489169 8.6e-06 20_[+5]_52 chrI:3269134-3269214 1.7e-05 63_[+5]_9 chrIV:2607633-2607713 1.7e-05 62_[+5]_10 chrIII:10877702-10877782 1.7e-05 10_[+5]_62 chrIII:2946801-2946881 1.7e-05 63_[+5]_9 chrIV:13512330-13512410 1.7e-05 57_[+5]_15 chrV:7142758-7142838 3e-05 47_[+5]_25 chrIV:10926736-10926816 3e-05 4_[+5]_68 chrII:11782675-11782755 3.6e-05 24_[+5]_48 chrIV:7796880-7796960 3.6e-05 17_[+5]_55 chrI:9622448-9622528 4.8e-05 19_[+5]_53 chrII:10935511-10935591 4.8e-05 56_[+5]_16 chrI:4765580-4765660 5.9e-05 11_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASGCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAASGCGC width=8 seqs=15 chrIV:2388114-2388194 ( 36) AAACGCGC 1 chrIII:5448342-5448422 ( 56) AAACGCGC 1 chrIII:4489089-4489169 ( 21) AAACGCGC 1 chrI:3269134-3269214 ( 64) AAAGGCGC 1 chrIV:2607633-2607713 ( 63) AAAGGCGC 1 chrIII:10877702-10877782 ( 11) AAAGGCGC 1 chrIII:2946801-2946881 ( 64) AAAGGCGC 1 chrIV:13512330-13512410 ( 58) AAAGGCGC 1 chrV:7142758-7142838 ( 48) AAACGCAC 1 chrIV:10926736-10926816 ( 5) AAACGCAC 1 chrII:11782675-11782755 ( 25) GAACGCGC 1 chrIV:7796880-7796960 ( 18) GAACGCGC 1 chrI:9622448-9622528 ( 20) AAAGGCAC 1 chrII:10935511-10935591 ( 57) AAAGGCAC 1 chrI:4765580-4765660 ( 12) AGACGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASGCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 8.3e+001 154 -1055 -56 -1055 164 -1055 -156 -1055 174 -1055 -1055 -1055 -1055 140 125 -1055 -1055 -1055 235 -1055 -1055 230 -1055 -1055 -16 -1055 190 -1055 -1055 230 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASGCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 8.3e+001 0.866667 0.000000 0.133333 0.000000 0.933333 0.000000 0.066667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.533333 0.466667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.000000 0.733333 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAASGCGC MEME-5 regular expression -------------------------------------------------------------------------------- AAA[CG]GC[GA]C -------------------------------------------------------------------------------- Time 21.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:17273864-17273944 9.46e-04 47_[+1(5.81e-05)]_1_[+4(1.32e-05)]_\ 16 chrII:11968419-11968499 1.31e-07 17_[+2(1.29e-05)]_36_[+1(1.49e-05)]_\ 11 chrIV:8888682-8888762 9.23e-04 80 chrII:4471145-4471225 8.79e-02 80 chrI:3931904-3931984 7.64e-04 12_[+2(3.87e-05)]_60 chrIII:10807388-10807468 1.34e-03 27_[+1(2.23e-05)]_45 chrIV:11372703-11372783 2.89e-01 80 chrI:7554724-7554804 6.11e-02 5_[+2(3.87e-05)]_67 chrI:519952-520032 3.13e-05 48_[+1(2.83e-05)]_8_[+2(2.54e-05)]_\ 8 chrIV:7548258-7548338 8.94e-01 80 chrII:14247404-14247484 3.45e-02 31_[+2(2.54e-05)]_41 chrI:14734822-14734902 3.98e-04 7_[+1(1.49e-05)]_18_[+2(1.29e-05)]_\ 39 chrIV:11337150-11337230 1.19e-02 59_[+1(2.83e-05)]_13 chrI:128345-128425 7.13e-02 80 chrI:3866591-3866671 3.18e-04 43_[+1(7.47e-05)]_29 chrIV:13512330-13512410 2.44e-06 24_[+1(7.47e-05)]_12_[+2(8.99e-05)]_\ 5_[+5(1.69e-05)]_15 chrI:6282554-6282634 3.40e-03 36_[+1(2.83e-05)]_36 chrIV:5469896-5469976 2.31e-05 43_[+1(5.81e-05)]_20_[+1(1.49e-05)]_\ 1 chrII:5377680-5377760 3.83e-01 80 chrIV:7796880-7796960 5.20e-06 17_[+5(3.56e-05)]_5_[+4(3.21e-05)]_\ 2_[+1(1.49e-05)]_32 chrV:8413800-8413880 3.30e-01 80 chrI:4114607-4114687 3.83e-02 49_[+1(2.83e-05)]_23 chrIV:9741294-9741374 2.89e-02 49_[+1(1.49e-05)]_23 chrII:7880535-7880615 5.65e-05 41_[+3(8.85e-06)]_20_[+1(3.62e-05)]_\ 3 chrI:4765580-4765660 6.37e-03 11_[+5(5.93e-05)]_61 chrI:3368637-3368717 2.02e-02 56_[+1(1.49e-05)]_16 chrV:3578964-3579044 8.63e-04 23_[+2(3.87e-05)]_13_[+1(1.49e-05)]_\ 28 chrX:10338951-10339031 8.49e-01 80 chrI:3198984-3199064 3.69e-03 36_[+1(8.98e-05)]_27_[+2(8.99e-05)]_\ 1 chrIII:11869503-11869583 1.00e+00 80 chrII:7664001-7664081 7.76e-02 36_[+1(4.51e-05)]_36 chrV:14457236-14457316 6.53e-03 46_[+3(8.85e-06)]_26 chrI:5274276-5274356 1.57e-02 59_[+4(4.11e-05)]_13 chrI:6513880-6513960 1.77e-06 4_[+4(2.16e-05)]_45_[+1(1.86e-05)]_\ 15 chrI:12919737-12919817 7.95e-04 13_[+2(2.54e-05)]_42_[+1(7.47e-05)]_\ 9 chrIV:9589235-9589315 3.62e-03 64_[+3(8.85e-06)]_8 chrIII:7104174-7104254 1.99e-01 80 chrV:1152927-1153007 8.57e-03 27_[+1(5.81e-05)]_45 chrV:4890165-4890245 5.35e-06 6_[+1(5.63e-06)]_20_[+3(5.66e-05)]_\ 38 chrV:12004705-12004785 9.77e-01 80 chrIV:13353401-13353481 2.83e-02 4_[+2(3.87e-05)]_68 chrV:5717388-5717468 1.20e-01 80 chrII:12284221-12284301 1.14e-04 14_[+3(2.19e-05)]_28_[+1(2.83e-05)]_\ 22 chrIV:6421358-6421438 2.80e-07 37_[+1(3.62e-05)]_24_[+1(5.63e-06)]_\ 3 chrI:6565977-6566057 1.85e-01 80 chrIII:5727965-5728045 1.36e-04 14_[+1(8.41e-05)]_26_[+3(2.19e-05)]_\ 24 chrII:10935511-10935591 6.44e-04 56_[+5(4.83e-05)]_16 chrIV:9778202-9778282 2.29e-04 62_[+1(1.49e-05)]_10 chrII:11578063-11578143 5.07e-03 36_[+1(5.63e-06)]_36 chrV:14835505-14835585 2.77e-03 53_[+1(2.83e-05)]_19 chrV:9382703-9382783 5.99e-06 24_[+3(5.66e-05)]_15_[+4(5.69e-06)]_\ 1_[+1(1.49e-05)]_16 chrI:13310762-13310842 8.16e-02 37_[+2(1.29e-05)]_6_[+2(8.99e-05)]_\ 21 chrX:6533141-6533221 8.85e-01 80 chrIII:13302666-13302746 9.24e-01 80 chrV:11817419-11817499 9.81e-01 80 chrI:10184426-10184506 9.72e-01 80 chrIII:4489089-4489169 2.85e-06 20_[+5(8.59e-06)]_52 chrIV:7477858-7477938 4.10e-04 57_[+1(7.47e-05)]_5_[+1(1.49e-05)]_\ 2 chrIII:2946801-2946881 4.39e-04 63_[+5(1.69e-05)]_9 chrII:9939028-9939108 9.57e-01 80 chrIV:2783359-2783439 1.77e-04 58_[+3(8.85e-06)]_14 chrIV:10177967-10178047 7.74e-02 45_[+4(4.11e-05)]_27 chrIII:5181473-5181553 7.70e-02 80 chrIII:9617105-9617185 8.01e-02 80 chrIII:5663679-5663759 2.93e-05 28_[+2(7.07e-05)]_4_[+4(9.42e-06)]_\ 13_[+1(4.51e-05)]_11 chrII:8187646-8187726 3.34e-02 80 chrI:7238845-7238925 6.60e-01 80 chrV:13309959-13310039 1.43e-01 80 chrII:12739467-12739547 9.94e-04 20_[+1(8.41e-05)]_37_[+2(8.99e-05)]_\ 7 chrV:8629028-8629108 9.18e-01 80 chrIII:9615227-9615307 9.95e-01 80 chrIII:3390309-3390389 2.24e-03 10_[+3(8.85e-06)]_5_[+2(7.07e-05)]_\ 49 chrV:6593880-6593960 5.40e-03 11_[+1(4.51e-05)]_23_[+1(3.62e-05)]_\ 30 chrIII:4984823-4984903 1.37e-03 7_[+1(3.62e-05)]_54_[+4(4.11e-05)]_\ 3 chrIII:10877702-10877782 1.50e-05 10_[+5(1.69e-05)]_54_[+3(8.85e-06)] chrII:14245065-14245145 9.05e-05 40_[+3(8.85e-06)]_5_[+2(7.07e-05)]_\ 19 chrII:14753969-14754049 1.82e-02 36_[+3(8.85e-06)]_36 chrIV:3609051-3609131 3.80e-01 80 chrIII:7178613-7178693 9.49e-01 80 chrV:775067-775147 9.32e-01 80 chrV:15397298-15397378 9.58e-01 80 chrI:6855604-6855684 1.23e-01 80 chrIII:4176326-4176406 6.93e-02 80 chrIV:13369327-13369407 8.77e-02 63_[+5(9.03e-05)]_9 chrII:7877957-7878037 7.36e-01 80 chrV:4175764-4175844 2.79e-03 16_[+5(1.69e-05)]_56 chrII:10393825-10393905 1.49e-04 11_[+4(5.69e-06)]_33_[+1(1.86e-05)]_\ 20 chrIII:10351837-10351917 7.06e-04 53_[+5(8.59e-06)]_19 chrII:10560697-10560777 2.21e-03 66_[+3(2.19e-05)]_6 chrIV:2709765-2709845 7.29e-01 80 chrI:6558777-6558857 1.00e+00 80 chrV:13312426-13312506 8.56e-03 80 chrI:8487397-8487477 1.06e-01 80 chrIII:10740759-10740839 9.80e-01 80 chrIII:6442620-6442700 6.18e-02 80 chrIII:10600408-10600488 4.15e-01 80 chrIV:2111597-2111677 6.79e-01 80 chrI:9622448-9622528 1.70e-03 1_[+2(3.87e-05)]_10_[+5(4.83e-05)]_\ 53 chrII:8326746-8326826 3.81e-02 80 chrI:2304318-2304398 3.41e-01 80 chrIV:4760822-4760902 1.70e-02 43_[+2(3.87e-05)]_29 chrI:8328878-8328958 5.55e-01 80 chrI:5113915-5113995 1.71e-04 15_[+2(8.99e-05)]_15_[+1(5.63e-06)]_\ 34 chrIV:7958256-7958336 9.98e-01 80 chrV:4755464-4755544 1.02e-01 80 chrIV:7925184-7925264 6.84e-01 80 chrV:2731247-2731327 9.74e-01 80 chrIV:1277270-1277350 4.20e-03 32_[+4(6.63e-05)]_3_[+2(7.07e-05)]_\ 29 chrIII:7180757-7180837 1.29e-01 80 chrIII:5321966-5322046 9.98e-01 80 chrV:6783253-6783333 3.13e-01 80 chrII:8273247-8273327 9.98e-01 80 chrI:2418164-2418244 8.46e-01 80 chrV:20267233-20267313 9.86e-01 80 chrIV:8286479-8286559 8.83e-01 80 chrI:5619290-5619370 2.22e-05 6_[+1(5.63e-06)]_23_[+2(8.99e-05)]_\ 35 chrV:15184291-15184371 2.66e-01 80 chrIV:428911-428991 4.99e-02 80 chrI:7307132-7307212 2.38e-01 80 chrIII:5448342-5448422 8.20e-06 8_[+1(5.81e-05)]_19_[+1(2.83e-05)]_\ 12_[+5(8.59e-06)]_17 chrIV:9989456-9989536 8.93e-01 80 chrII:11972372-11972452 1.64e-01 80 chrII:8456875-8456955 1.37e-01 80 chrI:1341277-1341357 9.80e-01 80 chrIII:7102009-7102089 4.21e-01 80 chrIII:5939249-5939329 3.13e-05 [+4(2.95e-05)]_3_[+4(2.95e-05)]_10_\ [+5(1.69e-05)]_43 chrIII:9824720-9824800 1.48e-02 80 chrIII:7855601-7855681 9.99e-01 80 chrII:7037760-7037840 6.52e-02 80 chrI:8582128-8582208 8.82e-01 80 chrII:10546437-10546517 9.63e-01 80 chrIV:9368052-9368132 1.06e-05 8_[+3(8.85e-06)]_23_[+3(8.85e-06)]_\ 6_[+2(8.99e-05)]_19 chrIV:11479241-11479321 1.45e-01 42_[+3(9.52e-05)]_30 chrV:14992850-14992930 1.84e-01 80 chrIII:13346969-13347049 9.02e-01 80 chrII:9502099-9502179 9.89e-01 80 chrIII:9393430-9393510 5.29e-02 9_[+1(8.41e-05)]_63 chrIV:13450939-13451019 1.92e-01 80 chrIV:9739233-9739313 4.59e-01 80 chrI:10331801-10331881 3.54e-01 80 chrII:582243-582323 2.46e-01 80 chrX:3408728-3408808 3.67e-01 80 chrIII:9228903-9228983 3.24e-04 46_[+3(8.85e-06)]_26 chrIV:9196420-9196500 1.03e-01 80 chrV:8415210-8415290 1.98e-01 80 chrV:16745038-16745118 8.99e-01 80 chrIII:10506046-10506126 9.12e-01 80 chrIII:5719942-5720022 1.46e-02 68_[+3(4.81e-05)]_4 chrIII:8101092-8101172 1.54e-02 80 chrIV:3212072-3212152 1.52e-05 29_[+2(3.87e-05)]_10_[+1(2.83e-05)]_\ [+1(2.83e-05)]_17 chrIV:11377603-11377683 4.71e-01 80 chrIII:12426759-12426839 9.35e-02 80 chrI:9624764-9624844 8.06e-01 80 chrI:7056615-7056695 2.90e-05 31_[+5(1.69e-05)]_41 chrIII:5083464-5083544 2.83e-01 80 chrII:42084-42164 1.11e-01 14_[+3(3.51e-05)]_58 chrI:1153338-1153418 8.26e-01 80 chrII:9741548-9741628 4.69e-01 80 chrIII:5705394-5705474 8.70e-01 80 chrII:4229327-4229407 6.26e-01 80 chrIII:10354723-10354803 5.87e-01 80 chrI:10570120-10570200 9.95e-01 80 chrIII:9060335-9060415 9.65e-01 80 chrI:11580304-11580384 5.68e-04 68_[+3(8.85e-06)]_4 chrIII:5714881-5714961 4.11e-01 80 chrIII:6969964-6970044 9.91e-01 80 chrV:4891494-4891574 9.90e-01 80 chrI:9512347-9512427 2.13e-01 80 chrI:7857691-7857771 8.97e-01 80 chrIII:5876418-5876498 3.32e-03 39_[+1(2.23e-05)]_33 chrII:14866853-14866933 6.38e-01 80 chrIII:8129440-8129520 9.59e-01 80 chrIV:9438915-9438995 8.74e-01 80 chrIII:6164640-6164720 6.80e-01 80 chrIV:2607633-2607713 6.32e-06 48_[+2(1.29e-05)]_6_[+5(1.69e-05)]_\ 10 chrIV:14072182-14072262 1.80e-01 80 chrII:6559202-6559282 8.04e-01 80 chrV:10813545-10813625 2.23e-02 71_[+4(1.32e-05)]_1 chrV:14832820-14832900 2.45e-02 5_[+4(2.16e-05)]_67 chrII:9056352-9056432 7.87e-01 80 chrIV:7782305-7782385 6.44e-01 80 chrII:9523713-9523793 5.85e-06 23_[+2(1.29e-05)]_36_[+4(6.63e-05)]_\ 5 chrI:10436989-10437069 8.36e-01 80 chrI:5818220-5818300 7.15e-04 50_[+2(2.54e-05)]_22 chrV:10023226-10023306 8.69e-02 58_[+3(3.51e-05)]_14 chrI:5103448-5103528 7.14e-04 36_[+4(9.81e-05)]_36 chrI:11909208-11909288 3.59e-01 80 chrIII:13299150-13299230 8.92e-01 80 chrII:13732305-13732385 4.40e-01 80 chrI:8839252-8839332 2.71e-02 29_[+1(2.83e-05)]_43 chrIV:15530567-15530647 9.20e-01 80 chrIV:2388114-2388194 2.07e-02 35_[+5(8.59e-06)]_37 chrI:7895388-7895468 6.27e-02 80 chrX:6609372-6609452 2.19e-01 80 chrII:11596492-11596572 2.05e-06 43_[+3(8.85e-06)]_5_[+2(2.54e-05)]_\ 16 chrIII:7209840-7209920 8.90e-01 80 chrV:14034016-14034096 9.69e-01 80 chrII:4703169-4703249 7.60e-01 80 chrV:13567138-13567218 3.01e-01 80 chrV:7775529-7775609 1.81e-01 80 chrV:9689465-9689545 6.85e-02 80 chrIV:4047802-4047882 1.05e-01 59_[+4(7.60e-05)]_13 chrIV:10926736-10926816 9.84e-02 4_[+5(3.00e-05)]_68 chrV:15395478-15395558 3.02e-03 80 chrIII:9782166-9782246 2.19e-01 80 chrIV:7488650-7488730 6.42e-02 80 chrII:11782675-11782755 2.23e-06 7_[+2(3.87e-05)]_9_[+5(3.56e-05)]_\ 13_[+1(7.47e-05)]_8_[+1(5.63e-06)]_11 chrI:9287205-9287285 1.07e-04 28_[+4(2.16e-05)]_11_[+2(8.99e-05)]_\ 25 chrI:6563707-6563787 7.97e-01 80 chrIV:4389052-4389132 7.41e-01 80 chrIV:5850976-5851056 7.86e-01 80 chrII:8037868-8037948 1.44e-01 62_[+1(5.23e-05)]_10 chrI:14720349-14720429 6.68e-01 80 chrI:13652711-13652791 5.86e-01 80 chrV:16919870-16919950 5.06e-01 80 chrIV:7800529-7800609 6.16e-01 80 chrIV:4748913-4748993 9.66e-01 80 chrI:347224-347304 6.50e-01 80 chrII:12994197-12994277 5.82e-02 80 chrV:2067573-2067653 9.49e-05 38_[+3(8.85e-06)]_22_[+4(9.81e-05)]_\ 4 chrIII:3902799-3902879 1.71e-01 80 chrV:13624425-13624505 4.65e-02 47_[+4(5.64e-05)]_25 chrX:14500808-14500888 2.94e-01 80 chrV:11889745-11889825 6.75e-01 80 chrV:15059656-15059736 1.05e-02 53_[+3(4.81e-05)]_19 chrI:10552993-10553073 6.13e-01 80 chrII:8020710-8020790 9.88e-01 80 chrV:12192355-12192435 6.31e-01 80 chrV:7142758-7142838 1.13e-03 13_[+1(4.51e-05)]_26_[+5(3.00e-05)]_\ 25 chrII:6587638-6587718 6.86e-01 80 chrII:11149958-11150038 9.63e-02 46_[+4(5.64e-05)]_26 chrV:6278395-6278475 3.61e-01 80 chrII:8933878-8933958 5.93e-05 2_[+4(1.32e-05)]_11_[+1(5.63e-06)]_\ 51 chrIII:5551006-5551086 6.96e-01 80 chrIII:6374188-6374268 3.28e-01 80 chrII:11917713-11917793 9.43e-01 80 chrI:13658034-13658114 9.18e-01 80 chrI:3269134-3269214 2.25e-03 63_[+5(1.69e-05)]_9 chrIII:9408461-9408541 2.03e-01 80 chrI:2830691-2830771 9.06e-01 80 chrI:9226646-9226726 9.74e-02 37_[+3(3.51e-05)]_35 chrX:3567050-3567130 6.23e-01 80 chrI:2584161-2584241 1.76e-01 80 chrIII:9748778-9748858 4.15e-01 80 chrI:4597689-4597769 6.35e-01 80 chrII:9738988-9739068 2.10e-03 54_[+4(5.69e-06)]_18 chrV:17859260-17859340 4.21e-04 62_[+1(1.49e-05)]_10 chrIV:653314-653394 1.35e-02 27_[+4(6.63e-05)]_45 chrI:3163844-3163924 3.46e-01 80 chrI:1157489-1157569 9.25e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************