******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/tbx-8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:3631753-3631833 1.0000 80 chrV:18720398-18720478 1.0000 80 chrX:12454420-12454500 1.0000 80 chrIII:3322450-3322530 1.0000 80 chrIV:8334474-8334554 1.0000 80 chrX:5056377-5056457 1.0000 80 chrIII:3499994-3500074 1.0000 80 chrII:9262998-9263078 1.0000 80 chrIII:931565-931645 1.0000 80 chrI:933477-933557 1.0000 80 chrI:6285885-6285965 1.0000 80 chrV:5284760-5284840 1.0000 80 chrII:10210990-10211070 1.0000 80 chrIII:3470628-3470708 1.0000 80 chrX:8156101-8156181 1.0000 80 chrIII:3114337-3114417 1.0000 80 chrIII:3476448-3476528 1.0000 80 chrII:9308878-9308958 1.0000 80 chrV:8040469-8040549 1.0000 80 chrV:14689473-14689553 1.0000 80 chrII:13986300-13986380 1.0000 80 chrV:265628-265708 1.0000 80 chrIV:3859422-3859502 1.0000 80 chrII:11537729-11537809 1.0000 80 chrX:9225472-9225552 1.0000 80 chrX:12890239-12890319 1.0000 80 chrV:8785711-8785791 1.0000 80 chrIV:3521830-3521910 1.0000 80 chrIII:3175122-3175202 1.0000 80 chrX:14504438-14504518 1.0000 80 chrIII:3664409-3664489 1.0000 80 chrI:7518777-7518857 1.0000 80 chrIII:178475-178555 1.0000 80 chrIII:3540595-3540675 1.0000 80 chrIII:3443479-3443559 1.0000 80 chrI:3671906-3671986 1.0000 80 chrIII:3249198-3249278 1.0000 80 chrV:7231013-7231093 1.0000 80 chrI:14066839-14066919 1.0000 80 chrV:13396554-13396634 1.0000 80 chrX:4972324-4972404 1.0000 80 chrII:13457632-13457712 1.0000 80 chrX:8646498-8646578 1.0000 80 chrX:16602593-16602673 1.0000 80 chrX:14115663-14115743 1.0000 80 chrII:7001609-7001689 1.0000 80 chrII:6248672-6248752 1.0000 80 chrII:1238075-1238155 1.0000 80 chrI:8986003-8986083 1.0000 80 chrI:10948044-10948124 1.0000 80 chrIV:16398377-16398457 1.0000 80 chrIII:3304706-3304786 1.0000 80 chrIII:4947514-4947594 1.0000 80 chrIV:16382358-16382438 1.0000 80 chrIII:9104225-9104305 1.0000 80 chrII:15263063-15263143 1.0000 80 chrIV:1687240-1687320 1.0000 80 chrIII:8293744-8293824 1.0000 80 chrV:975305-975385 1.0000 80 chrIII:12615248-12615328 1.0000 80 chrII:12042357-12042437 1.0000 80 chrIII:1053249-1053329 1.0000 80 chrI:11202496-11202576 1.0000 80 chrIII:3536699-3536779 1.0000 80 chrIII:3271763-3271843 1.0000 80 chrI:1575657-1575737 1.0000 80 chrIII:12616027-12616107 1.0000 80 chrI:2738009-2738089 1.0000 80 chrI:11579748-11579828 1.0000 80 chrI:6154445-6154525 1.0000 80 chrIII:640538-640618 1.0000 80 chrIV:6097205-6097285 1.0000 80 chrX:5475456-5475536 1.0000 80 chrII:6898132-6898212 1.0000 80 chrIII:8874333-8874413 1.0000 80 chrI:14960527-14960607 1.0000 80 chrX:7193965-7194045 1.0000 80 chrIII:3505291-3505371 1.0000 80 chrIII:5027281-5027361 1.0000 80 chrIII:3480463-3480543 1.0000 80 chrII:7708731-7708811 1.0000 80 chrIII:1601560-1601640 1.0000 80 chrII:13291722-13291802 1.0000 80 chrIII:89283-89363 1.0000 80 chrIV:11071028-11071108 1.0000 80 chrI:5306676-5306756 1.0000 80 chrIV:11407213-11407293 1.0000 80 chrI:7709234-7709314 1.0000 80 chrIII:4426733-4426813 1.0000 80 chrX:8818075-8818155 1.0000 80 chrIII:535350-535430 1.0000 80 chrII:14801265-14801345 1.0000 80 chrI:9855616-9855696 1.0000 80 chrIV:3807517-3807597 1.0000 80 chrII:13817251-13817331 1.0000 80 chrIII:3095509-3095589 1.0000 80 chrII:10388152-10388232 1.0000 80 chrX:4444263-4444343 1.0000 80 chrIV:13704115-13704195 1.0000 80 chrX:16928310-16928390 1.0000 80 chrV:13868926-13869006 1.0000 80 chrX:4617025-4617105 1.0000 80 chrI:2299693-2299773 1.0000 80 chrIV:9269052-9269132 1.0000 80 chrX:3348043-3348123 1.0000 80 chrX:9296749-9296829 1.0000 80 chrX:5022836-5022916 1.0000 80 chrIV:620460-620540 1.0000 80 chrI:8409925-8410005 1.0000 80 chrI:11664917-11664997 1.0000 80 chrIV:15049620-15049700 1.0000 80 chrI:13310413-13310493 1.0000 80 chrV:14524290-14524370 1.0000 80 chrX:14804867-14804947 1.0000 80 chrV:12354729-12354809 1.0000 80 chrIII:6805577-6805657 1.0000 80 chrX:16147769-16147849 1.0000 80 chrII:10761769-10761849 1.0000 80 chrIII:3427016-3427096 1.0000 80 chrIII:3735150-3735230 1.0000 80 chrIII:13225148-13225228 1.0000 80 chrIII:11848458-11848538 1.0000 80 chrIII:3916793-3916873 1.0000 80 chrII:11959378-11959458 1.0000 80 chrII:10545333-10545413 1.0000 80 chrIV:175964-176044 1.0000 80 chrI:14721579-14721659 1.0000 80 chrII:8128878-8128958 1.0000 80 chrIII:6133593-6133673 1.0000 80 chrI:7279324-7279404 1.0000 80 chrX:5319399-5319479 1.0000 80 chrIV:7487902-7487982 1.0000 80 chrIV:9477724-9477804 1.0000 80 chrV:13962152-13962232 1.0000 80 chrIII:1824690-1824770 1.0000 80 chrX:12367667-12367747 1.0000 80 chrIII:11463902-11463982 1.0000 80 chrIII:4568709-4568789 1.0000 80 chrI:9988888-9988968 1.0000 80 chrX:10435723-10435803 1.0000 80 chrI:6136559-6136639 1.0000 80 chrII:9566205-9566285 1.0000 80 chrX:11644065-11644145 1.0000 80 chrX:6371376-6371456 1.0000 80 chrIV:11026156-11026236 1.0000 80 chrV:20694077-20694157 1.0000 80 chrII:8325271-8325351 1.0000 80 chrII:8547123-8547203 1.0000 80 chrIII:4426933-4427013 1.0000 80 chrIV:11692521-11692601 1.0000 80 chrIV:9191371-9191451 1.0000 80 chrV:12596886-12596966 1.0000 80 chrII:5057418-5057498 1.0000 80 chrX:7794425-7794505 1.0000 80 chrV:12780457-12780537 1.0000 80 chrX:14102077-14102157 1.0000 80 chrIV:17087560-17087640 1.0000 80 chrV:15551789-15551869 1.0000 80 chrV:6709190-6709270 1.0000 80 chrX:12692167-12692247 1.0000 80 chrIV:2802356-2802436 1.0000 80 chrV:4731584-4731664 1.0000 80 chrIII:8319283-8319363 1.0000 80 chrI:1958516-1958596 1.0000 80 chrIII:4171149-4171229 1.0000 80 chrIII:1923778-1923858 1.0000 80 chrI:3873899-3873979 1.0000 80 chrIV:1981123-1981203 1.0000 80 chrI:882862-882942 1.0000 80 chrV:19126001-19126081 1.0000 80 chrII:13976310-13976390 1.0000 80 chrX:9337948-9338028 1.0000 80 chrII:66466-66546 1.0000 80 chrX:5707975-5708055 1.0000 80 chrX:5812127-5812207 1.0000 80 chrX:13653747-13653827 1.0000 80 chrV:11610633-11610713 1.0000 80 chrX:8386195-8386275 1.0000 80 chrX:5591984-5592064 1.0000 80 chrI:13161027-13161107 1.0000 80 chrIV:143918-143998 1.0000 80 chrV:10715928-10716008 1.0000 80 chrX:6742079-6742159 1.0000 80 chrIV:3552249-3552329 1.0000 80 chrIII:10624722-10624802 1.0000 80 chrX:1856329-1856409 1.0000 80 chrIII:5555076-5555156 1.0000 80 chrIII:3532170-3532250 1.0000 80 chrII:3567644-3567724 1.0000 80 chrII:3521446-3521526 1.0000 80 chrX:16604669-16604749 1.0000 80 chrII:6346603-6346683 1.0000 80 chrI:1701183-1701263 1.0000 80 chrIV:2725960-2726040 1.0000 80 chrX:1880740-1880820 1.0000 80 chrX:1858778-1858858 1.0000 80 chrI:2410120-2410200 1.0000 80 chrIV:8782279-8782359 1.0000 80 chrX:13121253-13121333 1.0000 80 chrV:3587804-3587884 1.0000 80 chrIV:3524772-3524852 1.0000 80 chrX:593242-593322 1.0000 80 chrIII:11371422-11371502 1.0000 80 chrII:11635990-11636070 1.0000 80 chrX:6903143-6903223 1.0000 80 chrIII:6979022-6979102 1.0000 80 chrII:12678342-12678422 1.0000 80 chrIV:3742392-3742472 1.0000 80 chrX:382851-382931 1.0000 80 chrIII:6158810-6158890 1.0000 80 chrIII:7642221-7642301 1.0000 80 chrI:488458-488538 1.0000 80 chrIII:12617181-12617261 1.0000 80 chrIV:16399228-16399308 1.0000 80 chrI:12198667-12198747 1.0000 80 chrII:9774818-9774898 1.0000 80 chrII:3502714-3502794 1.0000 80 chrV:11521548-11521628 1.0000 80 chrIII:10707187-10707267 1.0000 80 chrII:5292403-5292483 1.0000 80 chrV:11113326-11113406 1.0000 80 chrV:19522607-19522687 1.0000 80 chrV:19529255-19529335 1.0000 80 chrI:7472437-7472517 1.0000 80 chrIII:5294998-5295078 1.0000 80 chrV:9503538-9503618 1.0000 80 chrII:8107213-8107293 1.0000 80 chrIV:16946884-16946964 1.0000 80 chrIV:2639906-2639986 1.0000 80 chrIII:9861674-9861754 1.0000 80 chrI:9268977-9269057 1.0000 80 chrX:6593535-6593615 1.0000 80 chrX:3697727-3697807 1.0000 80 chrX:17513697-17513777 1.0000 80 chrIII:7570502-7570582 1.0000 80 chrX:8646699-8646779 1.0000 80 chrX:9637898-9637978 1.0000 80 chrI:2935739-2935819 1.0000 80 chrI:2514293-2514373 1.0000 80 chrIII:4470944-4471024 1.0000 80 chrII:14804769-14804849 1.0000 80 chrII:10169495-10169575 1.0000 80 chrII:14063197-14063277 1.0000 80 chrIII:5602176-5602256 1.0000 80 chrIV:5183869-5183949 1.0000 80 chrX:6292282-6292362 1.0000 80 chrI:5986329-5986409 1.0000 80 chrX:11252556-11252636 1.0000 80 chrIV:12086681-12086761 1.0000 80 chrIV:12032582-12032662 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_tbx-8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/tbx-8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.251 C 0.253 G 0.245 T 0.251 Background letter frequencies (from file dataset with add-one prior applied): A 0.251 C 0.253 G 0.245 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGCGCGCR MEME-1 width = 8 sites = 30 llr = 255 E-value = 7.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCGCGCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::::13 pos.-specific C 6:8:9:9: probability G :a:a:a:6 matrix T 4:2:1::: bits 2.0 * * * 1.8 * * * 1.6 * * * 1.4 ****** Relative 1.2 ****** Entropy 1.0 ******* (12.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCGCGCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1923778-1923858 5 1.48e-05 tgtg cgcgcgcg cgcgcgagcg chrV:4731584-4731664 15 1.48e-05 ATTGCAAAAA CGCGCGCG CGCATTGCAT chrV:6709190-6709270 51 1.48e-05 GTCTGCAACG CGCGCGCG CGTTTTTCGC chrI:14721579-14721659 41 1.48e-05 CTTTGCAATG CGCGCGCG CGGTTTTCGC chrI:11664917-11664997 31 1.48e-05 ATCCAGTGCT CGCGCGCG AGAGCAAACG chrIV:9269052-9269132 33 1.48e-05 GGACCCCTCC CGCGCGCG CTTGTCTGCG chrI:488458-488538 9 2.93e-05 ATTTCTCG TGCGCGCG ACGTTCATTT chrIII:4171149-4171229 14 2.93e-05 GAATGTCATC TGCGCGCG GCATATCTGC chrV:13962152-13962232 53 2.93e-05 TTGCATAAAC TGCGCGCG GCAACTGCAA chrIII:3916793-3916873 38 2.93e-05 TTGCAAACAC TGCGCGCG CAGCTTGCAA chrII:7708731-7708811 22 2.93e-05 AACAATGCAA TGCGCGCG CACGGTTTTT chrI:6285885-6285965 9 2.93e-05 ACTGTGTG TGCGCGCG CACCGGATTC chrIII:5555076-5555156 62 4.45e-05 GCGCAAAAAG CGCGCGCA CATTGCGTTT chrV:10715928-10716008 18 4.45e-05 GCGCTCGTCT CGCGCGCA CGTGACCGGA chrII:13291722-13291802 8 4.45e-05 TACCCCC CGCGCGCA CGAGTGGTCG chrIII:3664409-3664489 13 4.45e-05 TGCAACACGC CGCGCGCA TTTCGCAACG chrII:8325271-8325351 67 5.94e-05 AAATTTGCAA TGCGCGCA CGCAGT chrI:2935739-2935819 16 8.86e-05 GCTCACCCGC CGCGCGAG ACACCACAGC chrX:382851-382931 31 8.86e-05 ACAATGCAGA CGCGCGAG CGGTTTCTCT chrX:593242-593322 17 8.86e-05 AAGTCCAAAA CGCGCGAG AGCGGCTGGG chrV:11610633-11610713 25 1.03e-04 TTGCAAAAAA TGTGCGCG GGGGTTGCAG chrI:8409925-8410005 50 1.03e-04 CGAGGAGCTG TGTGCGCG ACACTTCTTC chrI:2514293-2514373 73 1.33e-04 GTGCGACCAC CGTGCGCA chrIV:16946884-16946964 37 1.33e-04 CAATAAATCC CGTGCGCA CCACTTGCAA chrIV:2725960-2726040 15 1.33e-04 AACGCGCCAG CGCGTGCG GGAAGTGCGT chrX:6742079-6742159 68 1.33e-04 GCGCTGTTTG CGTGCGCA GCCCA chrIV:1981123-1981203 20 1.91e-04 GCGGCGGGCT TGCGTGCG GCTCCCCGCC chrIII:11371422-11371502 53 2.21e-04 CACTCGGCCA CGCGTGCA TCACCGCCGG chrIII:1824690-1824770 31 2.21e-04 CTTGCAAAAT CGCGCGCC GCAGGCTGCA chrV:8040469-8040549 7 2.36e-04 AAGAAA TGCGCGAA AACGAGGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCGCGCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1923778-1923858 1.5e-05 4_[+1]_68 chrV:4731584-4731664 1.5e-05 14_[+1]_58 chrV:6709190-6709270 1.5e-05 50_[+1]_22 chrI:14721579-14721659 1.5e-05 40_[+1]_32 chrI:11664917-11664997 1.5e-05 30_[+1]_42 chrIV:9269052-9269132 1.5e-05 32_[+1]_40 chrI:488458-488538 2.9e-05 8_[+1]_64 chrIII:4171149-4171229 2.9e-05 13_[+1]_59 chrV:13962152-13962232 2.9e-05 52_[+1]_20 chrIII:3916793-3916873 2.9e-05 37_[+1]_35 chrII:7708731-7708811 2.9e-05 21_[+1]_51 chrI:6285885-6285965 2.9e-05 8_[+1]_64 chrIII:5555076-5555156 4.4e-05 61_[+1]_11 chrV:10715928-10716008 4.4e-05 17_[+1]_55 chrII:13291722-13291802 4.4e-05 7_[+1]_65 chrIII:3664409-3664489 4.4e-05 12_[+1]_60 chrII:8325271-8325351 5.9e-05 66_[+1]_6 chrI:2935739-2935819 8.9e-05 15_[+1]_57 chrX:382851-382931 8.9e-05 30_[+1]_42 chrX:593242-593322 8.9e-05 16_[+1]_56 chrV:11610633-11610713 0.0001 24_[+1]_48 chrI:8409925-8410005 0.0001 49_[+1]_23 chrI:2514293-2514373 0.00013 72_[+1] chrIV:16946884-16946964 0.00013 36_[+1]_36 chrIV:2725960-2726040 0.00013 14_[+1]_58 chrX:6742079-6742159 0.00013 67_[+1]_5 chrIV:1981123-1981203 0.00019 19_[+1]_53 chrIII:11371422-11371502 0.00022 52_[+1]_20 chrIII:1824690-1824770 0.00022 30_[+1]_42 chrV:8040469-8040549 0.00024 6_[+1]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCGCGCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCGCGCR width=8 seqs=30 chrIII:1923778-1923858 ( 5) CGCGCGCG 1 chrV:4731584-4731664 ( 15) CGCGCGCG 1 chrV:6709190-6709270 ( 51) CGCGCGCG 1 chrI:14721579-14721659 ( 41) CGCGCGCG 1 chrI:11664917-11664997 ( 31) CGCGCGCG 1 chrIV:9269052-9269132 ( 33) CGCGCGCG 1 chrI:488458-488538 ( 9) TGCGCGCG 1 chrIII:4171149-4171229 ( 14) TGCGCGCG 1 chrV:13962152-13962232 ( 53) TGCGCGCG 1 chrIII:3916793-3916873 ( 38) TGCGCGCG 1 chrII:7708731-7708811 ( 22) TGCGCGCG 1 chrI:6285885-6285965 ( 9) TGCGCGCG 1 chrIII:5555076-5555156 ( 62) CGCGCGCA 1 chrV:10715928-10716008 ( 18) CGCGCGCA 1 chrII:13291722-13291802 ( 8) CGCGCGCA 1 chrIII:3664409-3664489 ( 13) CGCGCGCA 1 chrII:8325271-8325351 ( 67) TGCGCGCA 1 chrI:2935739-2935819 ( 16) CGCGCGAG 1 chrX:382851-382931 ( 31) CGCGCGAG 1 chrX:593242-593322 ( 17) CGCGCGAG 1 chrV:11610633-11610713 ( 25) TGTGCGCG 1 chrI:8409925-8410005 ( 50) TGTGCGCG 1 chrI:2514293-2514373 ( 73) CGTGCGCA 1 chrIV:16946884-16946964 ( 37) CGTGCGCA 1 chrIV:2725960-2726040 ( 15) CGCGTGCG 1 chrX:6742079-6742159 ( 68) CGTGCGCA 1 chrIV:1981123-1981203 ( 20) TGCGTGCG 1 chrIII:11371422-11371502 ( 53) CGCGTGCA 1 chrIII:1824690-1824770 ( 31) CGCGCGCC 1 chrV:8040469-8040549 ( 7) TGCGCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCGCGCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 7.9e-001 -1155 132 -1155 55 -1155 -1155 203 -1155 -1155 172 -1155 -59 -1155 -1155 203 -1155 -1155 183 -1155 -132 -1155 -1155 203 -1155 -91 177 -1155 -1155 41 -292 137 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCGCGCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 7.9e-001 0.000000 0.633333 0.000000 0.366667 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 1.000000 0.000000 0.133333 0.866667 0.000000 0.000000 0.333333 0.033333 0.633333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCGCGCR MEME-1 regular expression -------------------------------------------------------------------------------- [CT]GCGCGC[GA] -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTTCGA MEME-2 width = 8 sites = 22 llr = 201 E-value = 4.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:::::2a pos.-specific C 1::::a:: probability G 6aa2::8: matrix T 1::8a::: bits 2.0 ** ** * 1.8 ** ** * 1.6 ** ** * 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******* (13.2 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTCGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12678342-12678422 21 1.43e-05 GAGAAGTCTG GGGTTCGA TTCCCCATAC chrX:4444263-4444343 48 1.43e-05 CACGCGGCCC GGGTTCGA TTCCCGGCAT chrIII:1601560-1601640 18 1.43e-05 AATGAGTGTG GGGTTCGA ACCAGGGACC chrII:7001609-7001689 67 1.43e-05 GAGAAGTCTG GGGTTCGA TTCCCC chrX:8646498-8646578 31 1.43e-05 CACGCGGCCC GGGTTCGA TTCCCGGCAT chrIII:3249198-3249278 69 1.43e-05 CAACACACCG GGGTTCGA CTCC chrIII:6158810-6158890 27 2.90e-05 CTGCCCGCGT AGGTTCGA ATCCTGCTGA chrX:8386195-8386275 59 2.90e-05 AGAAGATTGC AGGTTCGA GCCCTGCCTG chrIII:3505291-3505371 44 2.90e-05 CCATGCGTTG AGGTTCGA TGGGTCTCGC chrII:6248672-6248752 26 2.90e-05 CACACAATGT AGGTTCGA CCCCCGCTTT chrIII:5602176-5602256 2 5.76e-05 C GGGGTCGA ACTTGTGGAC chrV:9503538-9503618 73 5.76e-05 GAGAAGTCTG GGGTTCAA chrIV:16399228-16399308 5 5.76e-05 GCTG GGGTTCAA TTCCCCATAC chrIV:2802356-2802436 30 5.76e-05 tgcgagaccc gggttcaa ttcccggccg chrII:5057418-5057498 40 5.76e-05 GCCGCCAGCA GGGGTCGA ACCTGCGACC chrII:13291722-13291802 26 5.76e-05 CGAGTGGTCG GGGGTCGA TCGGAAAACC chrIV:16398377-16398457 56 5.76e-05 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrX:16602593-16602673 52 5.76e-05 TAGGGGTGTG GGGGTCGA ACCATTAACC chrI:2410120-2410200 54 8.70e-05 TGTAGCGCGC TGGTTCGA TCCCCACCAA chrII:11959378-11959458 47 8.70e-05 AGTAGGCCGC CGGTTCGA TCCCGGCCAG chrIII:6805577-6805657 41 8.70e-05 GAAAGGTTGG TGGTTCGA GCCCACCCGG chrIV:620460-620540 72 8.70e-05 AGAAGGTCGC CGGTTCGA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12678342-12678422 1.4e-05 20_[+2]_52 chrX:4444263-4444343 1.4e-05 47_[+2]_25 chrIII:1601560-1601640 1.4e-05 17_[+2]_55 chrII:7001609-7001689 1.4e-05 66_[+2]_6 chrX:8646498-8646578 1.4e-05 30_[+2]_42 chrIII:3249198-3249278 1.4e-05 68_[+2]_4 chrIII:6158810-6158890 2.9e-05 26_[+2]_46 chrX:8386195-8386275 2.9e-05 58_[+2]_14 chrIII:3505291-3505371 2.9e-05 43_[+2]_29 chrII:6248672-6248752 2.9e-05 25_[+2]_47 chrIII:5602176-5602256 5.8e-05 1_[+2]_71 chrV:9503538-9503618 5.8e-05 72_[+2] chrIV:16399228-16399308 5.8e-05 4_[+2]_68 chrIV:2802356-2802436 5.8e-05 29_[+2]_43 chrII:5057418-5057498 5.8e-05 39_[+2]_33 chrII:13291722-13291802 5.8e-05 25_[+2]_47 chrIV:16398377-16398457 5.8e-05 55_[+2]_17 chrX:16602593-16602673 5.8e-05 51_[+2]_21 chrI:2410120-2410200 8.7e-05 53_[+2]_19 chrII:11959378-11959458 8.7e-05 46_[+2]_26 chrIII:6805577-6805657 8.7e-05 40_[+2]_32 chrIV:620460-620540 8.7e-05 71_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTTCGA width=8 seqs=22 chrII:12678342-12678422 ( 21) GGGTTCGA 1 chrX:4444263-4444343 ( 48) GGGTTCGA 1 chrIII:1601560-1601640 ( 18) GGGTTCGA 1 chrII:7001609-7001689 ( 67) GGGTTCGA 1 chrX:8646498-8646578 ( 31) GGGTTCGA 1 chrIII:3249198-3249278 ( 69) GGGTTCGA 1 chrIII:6158810-6158890 ( 27) AGGTTCGA 1 chrX:8386195-8386275 ( 59) AGGTTCGA 1 chrIII:3505291-3505371 ( 44) AGGTTCGA 1 chrII:6248672-6248752 ( 26) AGGTTCGA 1 chrIII:5602176-5602256 ( 2) GGGGTCGA 1 chrV:9503538-9503618 ( 73) GGGTTCAA 1 chrIV:16399228-16399308 ( 5) GGGTTCAA 1 chrIV:2802356-2802436 ( 30) GGGTTCAA 1 chrII:5057418-5057498 ( 40) GGGGTCGA 1 chrII:13291722-13291802 ( 26) GGGGTCGA 1 chrIV:16398377-16398457 ( 56) GGGTTCAA 1 chrX:16602593-16602673 ( 52) GGGGTCGA 1 chrI:2410120-2410200 ( 54) TGGTTCGA 1 chrII:11959378-11959458 ( 47) CGGTTCGA 1 chrIII:6805577-6805657 ( 41) TGGTTCGA 1 chrIV:620460-620540 ( 72) CGGTTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 4.5e-001 -46 -148 137 -146 -1110 -1110 203 -1110 -1110 -1110 203 -1110 -1110 -1110 -43 171 -1110 -1110 -1110 200 -1110 198 -1110 -1110 -46 -1110 174 -1110 200 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.5e-001 0.181818 0.090909 0.636364 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.000000 0.818182 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-2 regular expression -------------------------------------------------------------------------------- GGGTTCGA -------------------------------------------------------------------------------- Time 8.78 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAWRAW MEME-3 width = 8 sites = 46 llr = 355 E-value = 7.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAWRAW MEME-3 Description -------------------------------------------------------------------------------- Simplified A aaaa6585 pos.-specific C :::::2:1 probability G :::::3:1 matrix T ::::4:23 bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 **** * Entropy 1.0 ***** * (11.1 bits) 0.8 ***** * 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus TGTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWRAW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10624722-10624802 7 1.58e-05 ACCCGC AAAAAAAA TTCGGTGCCT chrIV:3552249-3552329 41 1.58e-05 ACTAGTCGCT AAAAAAAA CTAGACACCC chrII:5057418-5057498 17 1.58e-05 TTGTAAATTA AAAAAAAA ATTTTGCCGC chrV:14524290-14524370 2 1.58e-05 G AAAAAAAA CTCAAAAAGA chrIV:3807517-3807597 62 1.58e-05 TTTTCGCGGC AAAAAAAA GTATAAAACC chrIII:3175122-3175202 8 1.58e-05 TCCCCCA AAAAAAAA TAAATCCACA chrIV:16946884-16946964 10 4.68e-05 ATTCCACGA AAAATAAA ACACGAAAAC chrII:5292403-5292483 17 4.68e-05 TTTTCTCCTA AAAATAAA ACATACTGCT chrII:10388152-10388232 5 4.68e-05 CCGG AAAATAAA AGAAAGTTTC chrII:14801265-14801345 25 4.68e-05 AAAGTGGTTA AAAATAAA TACTAAATTC chrIII:89283-89363 3 4.68e-05 AA AAAATAAA TTTGCCACTG chrIII:3536699-3536779 31 4.68e-05 ctccacggcc aaaataaa acgctccgcc chrIV:16382358-16382438 62 4.68e-05 CAACAACGAA AAAAAGAA GACTGATCTC chrV:20694077-20694157 5 6.25e-05 CTGC AAAAAAAT TAATTTTCAG chrI:7279324-7279404 4 6.25e-05 CTG AAAAAAAT TGAACTATAC chrIII:4568709-4568789 1 7.78e-05 . AAAATGAA AATGTCGCGC chrII:12042357-12042437 4 7.78e-05 TCT AAAATGAA AAATCAGGTT chrV:265628-265708 43 7.78e-05 CGGGTTTTTT AAAATGAA TATCATAGCT chrI:1701183-1701263 69 1.09e-04 GACACTGTAG AAAATAAT TTTT chrX:16604669-16604749 42 1.09e-04 GTTATTAGGC AAAAAGAT TCTCCCCGGC chrV:15551789-15551869 1 1.09e-04 . AAAAAGAT TCTCCCcggc chrV:8040469-8040549 43 1.09e-04 ATATATGTAT AAAATAAT TGGGGTGAGG chrIII:5294998-5295078 55 1.40e-04 ACGCTGCTGC AAAAACAA CACCCTCCAT chrV:11521548-11521628 29 1.40e-04 TTCACAAAAC AAAAAATA CTTTTTGAAC chrII:15263063-15263143 51 1.40e-04 GGGGAAAACT AAAAACAA CAAGCTTCTT chrX:12890239-12890319 21 1.40e-04 AAAGTCTCAC AAAAACAA ACAATGAAAA chrII:6346603-6346683 47 1.56e-04 AATCGAATCA AAAATGAT TCCTAAGTCA chrIII:8293744-8293824 20 1.56e-04 ATATTTTTAG AAAATGAT TGCTCCAAAC chrII:3502714-3502794 27 2.18e-04 AAATTCCCTC AAAAAAAC CCGAAAACCC chrX:8818075-8818155 14 2.18e-04 CAACTCGTAC AAAAAGTA TTTAGGGGGC chrIII:3476448-3476528 3 2.18e-04 AC AAAATCAA TAATAGACAA chrIII:931565-931645 72 2.18e-04 cacagagagt aaaatata g chrIII:3505291-3505371 8 2.50e-04 AATCGTG AAAAAATT TTAGGATAGC chrII:14063197-14063277 8 2.96e-04 AAAAATT AAAATAAC AATTTCTTTT chrI:14721579-14721659 11 2.96e-04 AAAAGATGAC AAAAAGAC GAGTCTCCGC chrIV:9269052-9269132 11 2.96e-04 AGAGGGAGCC AAAAAGAC GGGAGGACCC chrX:11252556-11252636 25 3.58e-04 ATATTAACCA AAAAAGTT TCGACCACGG chrX:1880740-1880820 68 3.58e-04 TTATTTGTAC AAAAAGTT TGGGC chrI:3873899-3873979 18 3.58e-04 AATTCAGCCT AAAAAGTT GTTGTACCAT chrIII:13225148-13225228 3 3.58e-04 TT AAAAAAAG TTTCGCTCCC chrIII:5555076-5555156 14 4.83e-04 TTGTCTACTG AAAAAATC TCTGCCTGCC chrIII:640538-640618 19 4.83e-04 TTGTAACAAG AAAATCTA AAATTATATG chrII:3521446-3521526 8 5.13e-04 TTACTTC AAAAACTT AATATTCGCT chrI:1958516-1958596 7 5.13e-04 TGCGAG AAAATGAG AAAAACGGGA chrV:12354729-12354809 21 5.13e-04 TTATTTCGCT AAAAACTT GATAAAGAAC chrIII:1601560-1601640 6 5.13e-04 GAGAA AAAATGAG TGTGGGGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWRAW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10624722-10624802 1.6e-05 6_[+3]_66 chrIV:3552249-3552329 1.6e-05 40_[+3]_32 chrII:5057418-5057498 1.6e-05 16_[+3]_56 chrV:14524290-14524370 1.6e-05 1_[+3]_71 chrIV:3807517-3807597 1.6e-05 61_[+3]_11 chrIII:3175122-3175202 1.6e-05 7_[+3]_65 chrIV:16946884-16946964 4.7e-05 9_[+3]_63 chrII:5292403-5292483 4.7e-05 16_[+3]_56 chrII:10388152-10388232 4.7e-05 4_[+3]_68 chrII:14801265-14801345 4.7e-05 24_[+3]_48 chrIII:89283-89363 4.7e-05 2_[+3]_70 chrIII:3536699-3536779 4.7e-05 30_[+3]_42 chrIV:16382358-16382438 4.7e-05 61_[+3]_11 chrV:20694077-20694157 6.3e-05 4_[+3]_68 chrI:7279324-7279404 6.3e-05 3_[+3]_69 chrIII:4568709-4568789 7.8e-05 [+3]_72 chrII:12042357-12042437 7.8e-05 3_[+3]_69 chrV:265628-265708 7.8e-05 42_[+3]_30 chrI:1701183-1701263 0.00011 68_[+3]_4 chrX:16604669-16604749 0.00011 41_[+3]_31 chrV:15551789-15551869 0.00011 [+3]_72 chrV:8040469-8040549 0.00011 42_[+3]_30 chrIII:5294998-5295078 0.00014 54_[+3]_18 chrV:11521548-11521628 0.00014 28_[+3]_44 chrII:15263063-15263143 0.00014 50_[+3]_22 chrX:12890239-12890319 0.00014 20_[+3]_52 chrII:6346603-6346683 0.00016 46_[+3]_26 chrIII:8293744-8293824 0.00016 19_[+3]_53 chrII:3502714-3502794 0.00022 26_[+3]_46 chrX:8818075-8818155 0.00022 13_[+3]_59 chrIII:3476448-3476528 0.00022 2_[+3]_70 chrIII:931565-931645 0.00022 71_[+3]_1 chrIII:3505291-3505371 0.00025 7_[+3]_65 chrII:14063197-14063277 0.0003 7_[+3]_65 chrI:14721579-14721659 0.0003 10_[+3]_62 chrIV:9269052-9269132 0.0003 10_[+3]_62 chrX:11252556-11252636 0.00036 24_[+3]_48 chrX:1880740-1880820 0.00036 67_[+3]_5 chrI:3873899-3873979 0.00036 17_[+3]_55 chrIII:13225148-13225228 0.00036 2_[+3]_70 chrIII:5555076-5555156 0.00048 13_[+3]_59 chrIII:640538-640618 0.00048 18_[+3]_54 chrII:3521446-3521526 0.00051 7_[+3]_65 chrI:1958516-1958596 0.00051 6_[+3]_66 chrV:12354729-12354809 0.00051 20_[+3]_52 chrIII:1601560-1601640 0.00051 5_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWRAW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAWRAW width=8 seqs=46 chrIII:10624722-10624802 ( 7) AAAAAAAA 1 chrIV:3552249-3552329 ( 41) AAAAAAAA 1 chrII:5057418-5057498 ( 17) AAAAAAAA 1 chrV:14524290-14524370 ( 2) AAAAAAAA 1 chrIV:3807517-3807597 ( 62) AAAAAAAA 1 chrIII:3175122-3175202 ( 8) AAAAAAAA 1 chrIV:16946884-16946964 ( 10) AAAATAAA 1 chrII:5292403-5292483 ( 17) AAAATAAA 1 chrII:10388152-10388232 ( 5) AAAATAAA 1 chrII:14801265-14801345 ( 25) AAAATAAA 1 chrIII:89283-89363 ( 3) AAAATAAA 1 chrIII:3536699-3536779 ( 31) AAAATAAA 1 chrIV:16382358-16382438 ( 62) AAAAAGAA 1 chrV:20694077-20694157 ( 5) AAAAAAAT 1 chrI:7279324-7279404 ( 4) AAAAAAAT 1 chrIII:4568709-4568789 ( 1) AAAATGAA 1 chrII:12042357-12042437 ( 4) AAAATGAA 1 chrV:265628-265708 ( 43) AAAATGAA 1 chrI:1701183-1701263 ( 69) AAAATAAT 1 chrX:16604669-16604749 ( 42) AAAAAGAT 1 chrV:15551789-15551869 ( 1) AAAAAGAT 1 chrV:8040469-8040549 ( 43) AAAATAAT 1 chrIII:5294998-5295078 ( 55) AAAAACAA 1 chrV:11521548-11521628 ( 29) AAAAAATA 1 chrII:15263063-15263143 ( 51) AAAAACAA 1 chrX:12890239-12890319 ( 21) AAAAACAA 1 chrII:6346603-6346683 ( 47) AAAATGAT 1 chrIII:8293744-8293824 ( 20) AAAATGAT 1 chrII:3502714-3502794 ( 27) AAAAAAAC 1 chrX:8818075-8818155 ( 14) AAAAAGTA 1 chrIII:3476448-3476528 ( 3) AAAATCAA 1 chrIII:931565-931645 ( 72) AAAATATA 1 chrIII:3505291-3505371 ( 8) AAAAAATT 1 chrII:14063197-14063277 ( 8) AAAATAAC 1 chrI:14721579-14721659 ( 11) AAAAAGAC 1 chrIV:9269052-9269132 ( 11) AAAAAGAC 1 chrX:11252556-11252636 ( 25) AAAAAGTT 1 chrX:1880740-1880820 ( 68) AAAAAGTT 1 chrI:3873899-3873979 ( 18) AAAAAGTT 1 chrIII:13225148-13225228 ( 3) AAAAAAAG 1 chrIII:5555076-5555156 ( 14) AAAAAATC 1 chrIII:640538-640618 ( 19) AAAATCTA 1 chrII:3521446-3521526 ( 8) AAAAACTT 1 chrI:1958516-1958596 ( 7) AAAATGAG 1 chrV:12354729-12354809 ( 21) AAAAACTT 1 chrIII:1601560-1601640 ( 6) AAAATGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWRAW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.69444 E= 7.8e+000 200 -1217 -1217 -1217 200 -1217 -1217 -1217 200 -1217 -1217 -1217 200 -1217 -1217 -1217 123 -1217 -1217 72 100 -74 50 -1217 160 -1217 -1217 -7 106 -122 -191 28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWRAW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 7.8e+000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.586957 0.000000 0.000000 0.413043 0.500000 0.152174 0.347826 0.000000 0.760870 0.000000 0.000000 0.239130 0.521739 0.108696 0.065217 0.304348 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAWRAW MEME-3 regular expression -------------------------------------------------------------------------------- AAAA[AT][AG][AT][AT] -------------------------------------------------------------------------------- Time 12.46 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYKCAA MEME-4 width = 8 sites = 56 llr = 414 E-value = 1.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYKCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::1:89 pos.-specific C :1:5:81: probability G ::1:611: matrix T a9953::: bits 2.0 * 1.8 * 1.6 *** * 1.4 *** * Relative 1.2 *** * * Entropy 1.0 **** *** (10.7 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGCAA consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2935739-2935819 72 3.07e-05 TGATTCGCTC TTTCGCAA T chrIV:2639906-2639986 67 3.07e-05 TTTTTCAGTT TTTTGCAA ATTAAG chrV:19529255-19529335 7 3.07e-05 TAACAA TTTCGCAA TACCTATCCA chrV:11113326-11113406 48 3.07e-05 cggcacgcgt tttcgcaa gtctgccgca chrI:12198667-12198747 14 3.07e-05 GGTCAAATGT TTTTGCAA CACCTCATTA chrV:3587804-3587884 22 3.07e-05 CGGCGCGCGA TTTCGCAA CTCCGCCGCA chrI:1701183-1701263 22 3.07e-05 AAAACATTTT TTTCGCAA GTCTGCATTT chrV:6709190-6709270 63 3.07e-05 CGCGCGCGTT TTTCGCAA CGCCACCGCA chrIV:9191371-9191451 37 3.07e-05 ACAGTTGAGA TTTTGCAA AGGGCGTTTA chrI:14721579-14721659 53 3.07e-05 CGCGCGCGGT TTTCGCAA TATCGCCGCA chrII:7708731-7708811 36 3.07e-05 CGCGCACGGT TTTTGCAA TTCTCCCGCA chrIII:3664409-3664489 21 3.07e-05 GCCGCGCGCA TTTCGCAA CGCTGCCGCA chrIII:6158810-6158890 57 6.20e-05 GCGTTAAATT TTTTTCAA TTTTTTCGCA chrX:1880740-1880820 43 6.20e-05 tcaaaCAGCC TTTTTCAA AATCATTTTA chrI:14066839-14066919 70 6.20e-05 TTTCACACCC TTTTTCAA TGT chrIII:178475-178555 61 6.20e-05 ACATGTTACA TTTTTCAA TGTTTTATTT chrX:12454420-12454500 43 6.20e-05 TAAAGTCCAC TTTCTCAA TGGAGCGCGT chrIV:12086681-12086761 43 1.23e-04 TGCAACCTGC TTTCGGAA CTTTACCGTC chrII:5292403-5292483 37 1.23e-04 ATACTGCTTG TTTTACAA ATTAATAGTT chrII:3567644-3567724 62 1.23e-04 TTTAAAAGGA TTTCACAA ATTTTTTGAA chrIV:2802356-2802436 59 1.23e-04 GGAGAATTTG TTTTGGAA CGGCTTCTTC chrX:7794425-7794505 3 1.23e-04 TA TTTCACAA CAGAAGATAA chrIV:16382358-16382438 31 1.23e-04 CTGGGAGACA TTTTACAA CGGTATAACA chrIII:3476448-3476528 29 1.23e-04 AAGGACAACA TTTTGGAA ATCTACATCC chrV:19522607-19522687 59 1.54e-04 ATTTGAGCAT TTTCGCCA GTGAGCTCGT chrX:9296749-9296829 42 1.54e-04 CCGCATGGTG TTTTGCCA CTATGCCGCA chrIV:5183869-5183949 8 1.84e-04 TGACGCA TTTCGCGA CTCGTACACC chrIV:11692521-11692601 48 1.84e-04 CTTTTGACGG TTTTGCGA CGACTGTTGG chrI:5986329-5986409 14 2.76e-04 TTGTTACAAA TTGCGCAA GTGCAACCAC chrIII:10707187-10707267 51 2.76e-04 CAGTTGATGA TTGCGCAA ACGAGTGGCT chrV:11521548-11521628 38 2.76e-04 CAAAAAATAC TTTTTGAA CACCCGCGCA chrI:488458-488538 51 2.76e-04 TTTTTCAGTT TTTCTGAA CTTTTCTTCT chrIV:3742392-3742472 48 2.76e-04 TGACCATCAA TTTTTGAA ATTTTACTTT chrIII:5555076-5555156 50 2.76e-04 CGCGGGGCAC TTGCGCAA AAAGCGCGCG chrV:11610633-11610713 13 2.76e-04 TGCGCGCTCA TCTTGCAA AAAATGTGCG chrI:1958516-1958596 41 2.76e-04 TGCGGCGGTG TTGCGCAA CGGTGTGCGG chrIII:4426933-4427013 29 2.76e-04 GAACGAGACA TCTCGCAA TAGGAGGTGT chrIII:1824690-1824770 20 2.76e-04 CGTGCGGCGC TCTTGCAA AATCGCGCGC chrIII:3735150-3735230 58 2.76e-04 TTTCTCGATT TCTCGCAA AAACTGAATT chrIII:3095509-3095589 33 2.76e-04 AAATTTACGT TTTCTGAA TATTTTTCGC chrX:8646498-8646578 59 2.76e-04 GGGAAGTTTC TTTTTGAA TTTTGAATGG chrIII:1601560-1601640 38 3.07e-04 CAGGGACCTA TTTTTCCA AAAGCGAGGT chrIII:5027281-5027361 65 3.07e-04 AACAAAACAT TTTTTCCA GTGACAAA chrIII:640538-640618 58 3.07e-04 TTGTTCCTCA TTTCTCCA ATGTGAAATC chrIII:12617181-12617261 1 3.38e-04 . TTTTTCGA GAGTGAAGAG chrI:14960527-14960607 21 3.38e-04 CCGCCTGTCA TTTCTCGA GACAGCCGAC chrIII:4947514-4947594 39 3.38e-04 TGATTCTATA TTTCTCGA ATTCACTCTA chrX:17513697-17513777 22 4.00e-04 GTCTCTGCGC TCTCTCAA TGTTCAGTGT chrIII:8293744-8293824 53 4.00e-04 AGCATTTAGC TTGTTCAA CAAAAATGTA chrV:10715928-10716008 51 4.31e-04 GAAGGGAGGA TTTCGAAA GCCTGGCACG chrII:8325271-8325351 52 4.31e-04 GCGGAGCTAC TTTTGAAA TTTGCAATGC chrIV:1687240-1687320 15 4.60e-04 ATAACCCCCA TTTTGCAG TGCCTCCAGC chrI:8986003-8986083 31 4.60e-04 GAGAGGTCCT TTTTGCAG ATGTGATGTC chrII:11635990-11636070 49 5.53e-04 tctctTTACC TTTTACCA TCTGCTGCTA chrIV:9477724-9477804 24 5.53e-04 CAGGCCACAC TTTTACCA CCTGCGCCAT chrX:7193965-7194045 70 7.05e-04 CAATTGCGGA TTTTGCAC TAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2935739-2935819 3.1e-05 71_[+4]_1 chrIV:2639906-2639986 3.1e-05 66_[+4]_6 chrV:19529255-19529335 3.1e-05 6_[+4]_66 chrV:11113326-11113406 3.1e-05 47_[+4]_25 chrI:12198667-12198747 3.1e-05 13_[+4]_59 chrV:3587804-3587884 3.1e-05 21_[+4]_51 chrI:1701183-1701263 3.1e-05 21_[+4]_51 chrV:6709190-6709270 3.1e-05 62_[+4]_10 chrIV:9191371-9191451 3.1e-05 36_[+4]_36 chrI:14721579-14721659 3.1e-05 52_[+4]_20 chrII:7708731-7708811 3.1e-05 35_[+4]_37 chrIII:3664409-3664489 3.1e-05 20_[+4]_52 chrIII:6158810-6158890 6.2e-05 56_[+4]_16 chrX:1880740-1880820 6.2e-05 42_[+4]_30 chrI:14066839-14066919 6.2e-05 69_[+4]_3 chrIII:178475-178555 6.2e-05 60_[+4]_12 chrX:12454420-12454500 6.2e-05 42_[+4]_30 chrIV:12086681-12086761 0.00012 42_[+4]_30 chrII:5292403-5292483 0.00012 36_[+4]_36 chrII:3567644-3567724 0.00012 61_[+4]_11 chrIV:2802356-2802436 0.00012 58_[+4]_14 chrX:7794425-7794505 0.00012 2_[+4]_70 chrIV:16382358-16382438 0.00012 30_[+4]_42 chrIII:3476448-3476528 0.00012 28_[+4]_44 chrV:19522607-19522687 0.00015 58_[+4]_14 chrX:9296749-9296829 0.00015 41_[+4]_31 chrIV:5183869-5183949 0.00018 7_[+4]_65 chrIV:11692521-11692601 0.00018 47_[+4]_25 chrI:5986329-5986409 0.00028 13_[+4]_59 chrIII:10707187-10707267 0.00028 50_[+4]_22 chrV:11521548-11521628 0.00028 37_[+4]_35 chrI:488458-488538 0.00028 50_[+4]_22 chrIV:3742392-3742472 0.00028 47_[+4]_25 chrIII:5555076-5555156 0.00028 49_[+4]_23 chrV:11610633-11610713 0.00028 12_[+4]_60 chrI:1958516-1958596 0.00028 40_[+4]_32 chrIII:4426933-4427013 0.00028 28_[+4]_44 chrIII:1824690-1824770 0.00028 19_[+4]_53 chrIII:3735150-3735230 0.00028 57_[+4]_15 chrIII:3095509-3095589 0.00028 32_[+4]_40 chrX:8646498-8646578 0.00028 58_[+4]_14 chrIII:1601560-1601640 0.00031 37_[+4]_35 chrIII:5027281-5027361 0.00031 64_[+4]_8 chrIII:640538-640618 0.00031 57_[+4]_15 chrIII:12617181-12617261 0.00034 [+4]_72 chrI:14960527-14960607 0.00034 20_[+4]_52 chrIII:4947514-4947594 0.00034 38_[+4]_34 chrX:17513697-17513777 0.0004 21_[+4]_51 chrIII:8293744-8293824 0.0004 52_[+4]_20 chrV:10715928-10716008 0.00043 50_[+4]_22 chrII:8325271-8325351 0.00043 51_[+4]_21 chrIV:1687240-1687320 0.00046 14_[+4]_58 chrI:8986003-8986083 0.00046 30_[+4]_42 chrII:11635990-11636070 0.00055 48_[+4]_24 chrIV:9477724-9477804 0.00055 23_[+4]_49 chrX:7193965-7194045 0.0007 69_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYKCAA width=8 seqs=56 chrI:2935739-2935819 ( 72) TTTCGCAA 1 chrIV:2639906-2639986 ( 67) TTTTGCAA 1 chrV:19529255-19529335 ( 7) TTTCGCAA 1 chrV:11113326-11113406 ( 48) TTTCGCAA 1 chrI:12198667-12198747 ( 14) TTTTGCAA 1 chrV:3587804-3587884 ( 22) TTTCGCAA 1 chrI:1701183-1701263 ( 22) TTTCGCAA 1 chrV:6709190-6709270 ( 63) TTTCGCAA 1 chrIV:9191371-9191451 ( 37) TTTTGCAA 1 chrI:14721579-14721659 ( 53) TTTCGCAA 1 chrII:7708731-7708811 ( 36) TTTTGCAA 1 chrIII:3664409-3664489 ( 21) TTTCGCAA 1 chrIII:6158810-6158890 ( 57) TTTTTCAA 1 chrX:1880740-1880820 ( 43) TTTTTCAA 1 chrI:14066839-14066919 ( 70) TTTTTCAA 1 chrIII:178475-178555 ( 61) TTTTTCAA 1 chrX:12454420-12454500 ( 43) TTTCTCAA 1 chrIV:12086681-12086761 ( 43) TTTCGGAA 1 chrII:5292403-5292483 ( 37) TTTTACAA 1 chrII:3567644-3567724 ( 62) TTTCACAA 1 chrIV:2802356-2802436 ( 59) TTTTGGAA 1 chrX:7794425-7794505 ( 3) TTTCACAA 1 chrIV:16382358-16382438 ( 31) TTTTACAA 1 chrIII:3476448-3476528 ( 29) TTTTGGAA 1 chrV:19522607-19522687 ( 59) TTTCGCCA 1 chrX:9296749-9296829 ( 42) TTTTGCCA 1 chrIV:5183869-5183949 ( 8) TTTCGCGA 1 chrIV:11692521-11692601 ( 48) TTTTGCGA 1 chrI:5986329-5986409 ( 14) TTGCGCAA 1 chrIII:10707187-10707267 ( 51) TTGCGCAA 1 chrV:11521548-11521628 ( 38) TTTTTGAA 1 chrI:488458-488538 ( 51) TTTCTGAA 1 chrIV:3742392-3742472 ( 48) TTTTTGAA 1 chrIII:5555076-5555156 ( 50) TTGCGCAA 1 chrV:11610633-11610713 ( 13) TCTTGCAA 1 chrI:1958516-1958596 ( 41) TTGCGCAA 1 chrIII:4426933-4427013 ( 29) TCTCGCAA 1 chrIII:1824690-1824770 ( 20) TCTTGCAA 1 chrIII:3735150-3735230 ( 58) TCTCGCAA 1 chrIII:3095509-3095589 ( 33) TTTCTGAA 1 chrX:8646498-8646578 ( 59) TTTTTGAA 1 chrIII:1601560-1601640 ( 38) TTTTTCCA 1 chrIII:5027281-5027361 ( 65) TTTTTCCA 1 chrIII:640538-640618 ( 58) TTTCTCCA 1 chrIII:12617181-12617261 ( 1) TTTTTCGA 1 chrI:14960527-14960607 ( 21) TTTCTCGA 1 chrIII:4947514-4947594 ( 39) TTTCTCGA 1 chrX:17513697-17513777 ( 22) TCTCTCAA 1 chrIII:8293744-8293824 ( 53) TTGTTCAA 1 chrV:10715928-10716008 ( 51) TTTCGAAA 1 chrII:8325271-8325351 ( 52) TTTTGAAA 1 chrIV:1687240-1687320 ( 15) TTTTGCAG 1 chrI:8986003-8986083 ( 31) TTTTGCAG 1 chrII:11635990-11636070 ( 49) TTTTACCA 1 chrIV:9477724-9477804 ( 24) TTTTACCA 1 chrX:7193965-7194045 ( 70) TTTTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95106 E= 1.9e+000 -1245 -1245 -1245 200 -1245 -150 -1245 186 -1245 -1245 -146 186 -1245 93 -1245 105 -123 -1245 122 36 -281 170 -78 -1245 165 -102 -146 -1245 192 -382 -278 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.9e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.089286 0.000000 0.910714 0.000000 0.000000 0.089286 0.910714 0.000000 0.482143 0.000000 0.517857 0.107143 0.000000 0.571429 0.321429 0.035714 0.821429 0.142857 0.000000 0.785714 0.125000 0.089286 0.000000 0.946429 0.017857 0.035714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKCAA MEME-4 regular expression -------------------------------------------------------------------------------- TTT[TC][GT]CAA -------------------------------------------------------------------------------- Time 16.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-5 width = 8 sites = 11 llr = 115 E-value = 3.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :9::::a: pos.-specific C :1:a:a:: probability G 1:a::::a matrix T 9:::a::: bits 2.0 ****** 1.8 ****** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6593535-6593615 68 1.51e-05 ACTGCCTCGA TAGCTCAG TTGGG chrV:9503538-9503618 31 1.51e-05 GTCGGGGGTA TAGCTCAG GGGTAGAGCG chrV:19126001-19126081 50 1.51e-05 TCTGCCTCGA TAGCTCAG TTGGGAGAGC chrI:6136559-6136639 45 1.51e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrX:14804867-14804947 17 1.51e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:535350-535430 39 1.51e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrIV:16398377-16398457 14 1.51e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrII:7001609-7001689 25 1.51e-05 GTTACCTGTG TAGCTCAG GGGTAGAGCG chrV:14689473-14689553 66 1.51e-05 ATGCCGTCGA TAGCTCAG TTGGTAG chrIII:10707187-10707267 14 4.52e-05 TAAAAATCGG GAGCTCAG TGCACCGGAA chrIV:8334474-8334554 54 4.52e-05 GTTCGTGAGA TCGCTCAG GATTTCAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6593535-6593615 1.5e-05 67_[+5]_5 chrV:9503538-9503618 1.5e-05 30_[+5]_42 chrV:19126001-19126081 1.5e-05 49_[+5]_23 chrI:6136559-6136639 1.5e-05 44_[+5]_28 chrX:14804867-14804947 1.5e-05 16_[+5]_56 chrIII:535350-535430 1.5e-05 38_[+5]_34 chrIV:16398377-16398457 1.5e-05 13_[+5]_59 chrII:7001609-7001689 1.5e-05 24_[+5]_48 chrV:14689473-14689553 1.5e-05 65_[+5]_7 chrIII:10707187-10707267 4.5e-05 13_[+5]_59 chrIV:8334474-8334554 4.5e-05 53_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=11 chrX:6593535-6593615 ( 68) TAGCTCAG 1 chrV:9503538-9503618 ( 31) TAGCTCAG 1 chrV:19126001-19126081 ( 50) TAGCTCAG 1 chrI:6136559-6136639 ( 45) TAGCTCAG 1 chrX:14804867-14804947 ( 17) TAGCTCAG 1 chrIII:535350-535430 ( 39) TAGCTCAG 1 chrIV:16398377-16398457 ( 14) TAGCTCAG 1 chrII:7001609-7001689 ( 25) TAGCTCAG 1 chrV:14689473-14689553 ( 66) TAGCTCAG 1 chrIII:10707187-10707267 ( 14) GAGCTCAG 1 chrIV:8334474-8334554 ( 54) TCGCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 3.0e+002 -1010 -1010 -143 186 186 -148 -1010 -1010 -1010 -1010 203 -1010 -1010 198 -1010 -1010 -1010 -1010 -1010 200 -1010 198 -1010 -1010 200 -1010 -1010 -1010 -1010 -1010 203 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.0e+002 0.000000 0.000000 0.090909 0.909091 0.909091 0.090909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 19.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3631753-3631833 5.23e-01 80 chrV:18720398-18720478 8.46e-01 80 chrX:12454420-12454500 8.12e-02 42_[+4(6.20e-05)]_30 chrIII:3322450-3322530 1.20e-01 80 chrIV:8334474-8334554 6.36e-02 53_[+5(4.52e-05)]_19 chrX:5056377-5056457 9.85e-01 80 chrIII:3499994-3500074 7.70e-01 80 chrII:9262998-9263078 9.53e-01 80 chrIII:931565-931645 5.02e-01 80 chrI:933477-933557 9.71e-01 80 chrI:6285885-6285965 4.96e-02 8_[+1(2.93e-05)]_64 chrV:5284760-5284840 9.63e-01 80 chrII:10210990-10211070 5.85e-01 80 chrIII:3470628-3470708 4.91e-01 80 chrX:8156101-8156181 5.74e-01 80 chrIII:3114337-3114417 4.25e-01 80 chrIII:3476448-3476528 1.83e-02 80 chrII:9308878-9308958 8.74e-01 80 chrV:8040469-8040549 3.74e-02 80 chrV:14689473-14689553 1.82e-02 65_[+5(1.51e-05)]_7 chrII:13986300-13986380 9.37e-01 80 chrV:265628-265708 6.81e-02 42_[+3(7.78e-05)]_30 chrIV:3859422-3859502 9.84e-01 80 chrII:11537729-11537809 6.81e-01 80 chrX:9225472-9225552 2.03e-01 80 chrX:12890239-12890319 9.04e-02 80 chrV:8785711-8785791 4.27e-01 80 chrIV:3521830-3521910 9.61e-01 80 chrIII:3175122-3175202 7.23e-03 6_[+3(1.58e-05)]_66 chrX:14504438-14504518 8.29e-01 80 chrIII:3664409-3664489 5.22e-03 12_[+1(4.45e-05)]_[+4(3.07e-05)]_52 chrI:7518777-7518857 6.81e-01 80 chrIII:178475-178555 5.56e-02 60_[+4(6.20e-05)]_12 chrIII:3540595-3540675 5.57e-01 80 chrIII:3443479-3443559 9.93e-01 80 chrI:3671906-3671986 6.64e-01 80 chrIII:3249198-3249278 2.42e-02 68_[+2(1.43e-05)]_4 chrV:7231013-7231093 1.43e-01 80 chrI:14066839-14066919 1.71e-01 69_[+4(6.20e-05)]_3 chrV:13396554-13396634 6.35e-01 80 chrX:4972324-4972404 8.53e-01 80 chrII:13457632-13457712 9.52e-01 80 chrX:8646498-8646578 1.22e-02 30_[+2(1.43e-05)]_42 chrX:16602593-16602673 1.61e-01 51_[+2(5.76e-05)]_21 chrX:14115663-14115743 8.86e-01 80 chrII:7001609-7001689 3.57e-04 24_[+5(1.51e-05)]_34_[+2(1.43e-05)]_\ 6 chrII:6248672-6248752 4.42e-03 25_[+2(2.90e-05)]_47 chrII:1238075-1238155 7.71e-01 80 chrI:8986003-8986083 5.66e-01 80 chrI:10948044-10948124 9.12e-01 80 chrIV:16398377-16398457 4.14e-03 13_[+5(1.51e-05)]_34_[+2(5.76e-05)]_\ 17 chrIII:3304706-3304786 1.47e-01 80 chrIII:4947514-4947594 5.16e-01 80 chrIV:16382358-16382438 1.89e-02 61_[+3(4.68e-05)]_11 chrIII:9104225-9104305 6.62e-01 80 chrII:15263063-15263143 4.12e-01 80 chrIV:1687240-1687320 2.59e-01 80 chrIII:8293744-8293824 3.28e-02 80 chrV:975305-975385 4.12e-01 80 chrIII:12615248-12615328 8.37e-01 80 chrII:12042357-12042437 1.23e-01 3_[+3(7.78e-05)]_69 chrIII:1053249-1053329 9.65e-01 80 chrI:11202496-11202576 1.00e+00 80 chrIII:3536699-3536779 2.38e-02 30_[+3(4.68e-05)]_42 chrIII:3271763-3271843 7.91e-01 80 chrI:1575657-1575737 9.31e-01 80 chrIII:12616027-12616107 1.11e-01 80 chrI:2738009-2738089 9.73e-01 80 chrI:11579748-11579828 6.38e-01 80 chrI:6154445-6154525 7.62e-01 80 chrIII:640538-640618 1.37e-01 80 chrIV:6097205-6097285 7.70e-01 80 chrX:5475456-5475536 9.43e-01 80 chrII:6898132-6898212 2.92e-01 80 chrIII:8874333-8874413 9.71e-01 80 chrI:14960527-14960607 2.81e-01 80 chrX:7193965-7194045 3.63e-02 80 chrIII:3505291-3505371 2.54e-03 43_[+2(2.90e-05)]_29 chrIII:5027281-5027361 1.52e-01 80 chrIII:3480463-3480543 9.90e-01 80 chrII:7708731-7708811 2.24e-03 21_[+1(2.93e-05)]_6_[+4(3.07e-05)]_\ 37 chrIII:1601560-1601640 1.00e-03 17_[+2(1.43e-05)]_55 chrII:13291722-13291802 8.02e-03 7_[+1(4.45e-05)]_10_[+2(5.76e-05)]_\ 47 chrIII:89283-89363 4.26e-03 2_[+3(4.68e-05)]_70 chrIV:11071028-11071108 1.00e+00 80 chrI:5306676-5306756 7.63e-01 80 chrIV:11407213-11407293 3.49e-01 80 chrI:7709234-7709314 3.44e-01 80 chrIII:4426733-4426813 5.06e-01 80 chrX:8818075-8818155 1.55e-01 80 chrIII:535350-535430 8.68e-02 38_[+5(1.51e-05)]_34 chrII:14801265-14801345 6.52e-02 24_[+3(4.68e-05)]_31_[+3(7.78e-05)]_\ 9 chrI:9855616-9855696 2.69e-01 80 chrIV:3807517-3807597 3.13e-02 61_[+3(1.58e-05)]_11 chrII:13817251-13817331 9.08e-01 80 chrIII:3095509-3095589 1.53e-01 80 chrII:10388152-10388232 8.91e-03 4_[+3(4.68e-05)]_13_[+3(6.25e-05)]_\ 47 chrX:4444263-4444343 5.89e-02 47_[+2(1.43e-05)]_25 chrIV:13704115-13704195 9.37e-01 80 chrX:16928310-16928390 9.56e-01 80 chrV:13868926-13869006 1.00e+00 80 chrX:4617025-4617105 2.72e-01 80 chrI:2299693-2299773 6.30e-01 80 chrIV:9269052-9269132 1.04e-02 32_[+1(1.48e-05)]_40 chrX:3348043-3348123 1.67e-01 80 chrX:9296749-9296829 2.61e-01 80 chrX:5022836-5022916 7.24e-01 80 chrIV:620460-620540 1.16e-01 71_[+2(8.70e-05)]_1 chrI:8409925-8410005 1.99e-01 80 chrI:11664917-11664997 2.22e-02 30_[+1(1.48e-05)]_42 chrIV:15049620-15049700 6.89e-01 80 chrI:13310413-13310493 9.28e-01 80 chrV:14524290-14524370 4.69e-02 1_[+3(1.58e-05)]_25_[+3(4.68e-05)]_\ 38 chrX:14804867-14804947 5.53e-03 16_[+5(1.51e-05)]_56 chrV:12354729-12354809 2.21e-01 80 chrIII:6805577-6805657 6.57e-02 40_[+2(8.70e-05)]_32 chrX:16147769-16147849 1.38e-01 80 chrII:10761769-10761849 6.50e-01 80 chrIII:3427016-3427096 9.26e-01 80 chrIII:3735150-3735230 1.75e-02 80 chrIII:13225148-13225228 9.13e-03 80 chrIII:11848458-11848538 5.80e-01 80 chrIII:3916793-3916873 1.73e-02 37_[+1(2.93e-05)]_35 chrII:11959378-11959458 3.47e-01 46_[+2(8.70e-05)]_26 chrII:10545333-10545413 3.95e-01 80 chrIV:175964-176044 9.17e-01 80 chrI:14721579-14721659 1.38e-04 40_[+1(1.48e-05)]_4_[+4(3.07e-05)]_\ 20 chrII:8128878-8128958 8.29e-01 80 chrIII:6133593-6133673 5.23e-01 80 chrI:7279324-7279404 7.70e-03 3_[+3(6.25e-05)]_69 chrX:5319399-5319479 9.89e-01 80 chrIV:7487902-7487982 9.90e-01 80 chrIV:9477724-9477804 2.36e-01 80 chrV:13962152-13962232 1.60e-02 52_[+1(2.93e-05)]_20 chrIII:1824690-1824770 2.87e-02 80 chrX:12367667-12367747 5.79e-01 80 chrIII:11463902-11463982 3.59e-01 80 chrIII:4568709-4568789 4.40e-02 [+3(7.78e-05)]_72 chrI:9988888-9988968 8.99e-01 80 chrX:10435723-10435803 3.32e-01 80 chrI:6136559-6136639 7.09e-02 44_[+5(1.51e-05)]_28 chrII:9566205-9566285 8.70e-01 80 chrX:11644065-11644145 1.00e+00 80 chrX:6371376-6371456 5.33e-02 80 chrIV:11026156-11026236 5.87e-01 80 chrV:20694077-20694157 9.21e-02 4_[+3(6.25e-05)]_68 chrII:8325271-8325351 6.33e-03 66_[+1(5.94e-05)]_6 chrII:8547123-8547203 3.50e-01 80 chrIII:4426933-4427013 5.15e-01 80 chrIV:11692521-11692601 3.57e-01 80 chrIV:9191371-9191451 4.46e-02 36_[+4(3.07e-05)]_36 chrV:12596886-12596966 2.64e-01 80 chrII:5057418-5057498 6.51e-04 15_[+3(1.58e-05)]_16_[+2(5.76e-05)]_\ 33 chrX:7794425-7794505 1.61e-01 80 chrV:12780457-12780537 9.00e-01 80 chrX:14102077-14102157 7.52e-01 80 chrIV:17087560-17087640 8.48e-01 80 chrV:15551789-15551869 2.54e-01 80 chrV:6709190-6709270 2.45e-03 48_[+1(1.48e-05)]_6_[+4(3.07e-05)]_\ 10 chrX:12692167-12692247 5.99e-01 80 chrIV:2802356-2802436 7.99e-03 29_[+2(5.76e-05)]_43 chrV:4731584-4731664 1.39e-02 14_[+1(1.48e-05)]_58 chrIII:8319283-8319363 3.09e-02 80 chrI:1958516-1958596 9.67e-03 80 chrIII:4171149-4171229 2.14e-02 13_[+1(2.93e-05)]_59 chrIII:1923778-1923858 8.42e-02 4_[+1(1.48e-05)]_[+1(8.86e-05)]_60 chrI:3873899-3873979 3.04e-02 80 chrIV:1981123-1981203 1.42e-01 80 chrI:882862-882942 9.56e-01 80 chrV:19126001-19126081 5.47e-02 49_[+5(1.51e-05)]_23 chrII:13976310-13976390 3.52e-01 80 chrX:9337948-9338028 4.62e-01 80 chrII:66466-66546 8.29e-01 80 chrX:5707975-5708055 7.08e-01 80 chrX:5812127-5812207 2.04e-01 80 chrX:13653747-13653827 3.07e-01 80 chrV:11610633-11610713 5.73e-04 80 chrX:8386195-8386275 1.13e-02 58_[+2(2.90e-05)]_14 chrX:5591984-5592064 9.29e-01 80 chrI:13161027-13161107 9.96e-01 80 chrIV:143918-143998 9.12e-01 80 chrV:10715928-10716008 1.77e-02 17_[+1(4.45e-05)]_55 chrX:6742079-6742159 3.11e-02 80 chrIV:3552249-3552329 6.57e-02 40_[+3(1.58e-05)]_32 chrIII:10624722-10624802 4.66e-02 6_[+3(1.58e-05)]_66 chrX:1856329-1856409 3.40e-01 80 chrIII:5555076-5555156 2.32e-03 61_[+1(4.45e-05)]_11 chrIII:3532170-3532250 9.88e-01 80 chrII:3567644-3567724 8.12e-02 80 chrII:3521446-3521526 1.84e-01 80 chrX:16604669-16604749 3.93e-01 80 chrII:6346603-6346683 7.09e-02 80 chrI:1701183-1701263 7.30e-03 21_[+4(3.07e-05)]_51 chrIV:2725960-2726040 3.56e-01 80 chrX:1880740-1880820 4.42e-02 42_[+4(6.20e-05)]_30 chrX:1858778-1858858 8.63e-01 80 chrI:2410120-2410200 1.30e-02 53_[+2(8.70e-05)]_19 chrIV:8782279-8782359 9.26e-01 80 chrX:13121253-13121333 3.47e-01 80 chrV:3587804-3587884 2.56e-02 21_[+4(3.07e-05)]_51 chrIV:3524772-3524852 9.31e-01 80 chrX:593242-593322 1.67e-01 16_[+1(8.86e-05)]_56 chrIII:11371422-11371502 7.71e-03 69_[+5(6.01e-05)]_3 chrII:11635990-11636070 5.80e-01 80 chrX:6903143-6903223 5.35e-01 80 chrIII:6979022-6979102 5.69e-01 80 chrII:12678342-12678422 4.48e-03 20_[+2(1.43e-05)]_52 chrIV:3742392-3742472 1.84e-01 80 chrX:382851-382931 2.70e-01 30_[+1(8.86e-05)]_42 chrIII:6158810-6158890 3.06e-04 26_[+2(2.90e-05)]_22_[+4(6.20e-05)]_\ 16 chrIII:7642221-7642301 5.93e-01 80 chrI:488458-488538 2.03e-02 8_[+1(2.93e-05)]_64 chrIII:12617181-12617261 3.48e-01 80 chrIV:16399228-16399308 1.86e-01 4_[+2(5.76e-05)]_68 chrI:12198667-12198747 9.79e-03 13_[+4(3.07e-05)]_59 chrII:9774818-9774898 5.74e-01 80 chrII:3502714-3502794 6.33e-02 80 chrV:11521548-11521628 1.64e-02 80 chrIII:10707187-10707267 5.73e-03 13_[+5(4.52e-05)]_59 chrII:5292403-5292483 2.04e-02 16_[+3(4.68e-05)]_56 chrV:11113326-11113406 6.74e-02 47_[+4(3.07e-05)]_25 chrV:19522607-19522687 1.16e-01 80 chrV:19529255-19529335 1.72e-01 6_[+4(3.07e-05)]_66 chrI:7472437-7472517 7.10e-01 80 chrIII:5294998-5295078 1.56e-01 80 chrV:9503538-9503618 1.56e-03 30_[+5(1.51e-05)]_34_[+2(5.76e-05)] chrII:8107213-8107293 8.75e-01 80 chrIV:16946884-16946964 5.60e-03 9_[+3(4.68e-05)]_63 chrIV:2639906-2639986 1.01e-01 66_[+4(3.07e-05)]_6 chrIII:9861674-9861754 2.16e-01 80 chrI:9268977-9269057 6.26e-01 80 chrX:6593535-6593615 6.24e-02 67_[+5(1.51e-05)]_5 chrX:3697727-3697807 3.17e-01 80 chrX:17513697-17513777 3.98e-01 80 chrIII:7570502-7570582 2.85e-01 80 chrX:8646699-8646779 5.21e-01 80 chrX:9637898-9637978 8.17e-01 80 chrI:2935739-2935819 4.70e-03 15_[+1(8.86e-05)]_48_[+4(3.07e-05)]_\ 1 chrI:2514293-2514373 1.07e-01 80 chrIII:4470944-4471024 9.65e-01 80 chrII:14804769-14804849 9.70e-01 80 chrII:10169495-10169575 1.98e-01 80 chrII:14063197-14063277 1.10e-01 80 chrIII:5602176-5602256 8.01e-02 1_[+2(5.76e-05)]_71 chrIV:5183869-5183949 2.91e-01 80 chrX:6292282-6292362 6.99e-01 80 chrI:5986329-5986409 1.51e-01 80 chrX:11252556-11252636 6.35e-02 80 chrIV:12086681-12086761 4.77e-02 80 chrIV:12032582-12032662 3.62e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************