******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/tbx-7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:13474634-13474714 1.0000 80 chrIII:11832831-11832911 1.0000 80 chrIII:11093655-11093735 1.0000 80 chrV:4181869-4181949 1.0000 80 chrIV:17108362-17108442 1.0000 80 chrV:16553073-16553153 1.0000 80 chrIV:1687346-1687426 1.0000 80 chrI:5118930-5119010 1.0000 80 chrI:2710645-2710725 1.0000 80 chrI:13422611-13422691 1.0000 80 chrI:2144162-2144242 1.0000 80 chrII:15008617-15008697 1.0000 80 chrV:16746708-16746788 1.0000 80 chrI:12899127-12899207 1.0000 80 chrI:636773-636853 1.0000 80 chrIII:12673521-12673601 1.0000 80 chrV:156214-156294 1.0000 80 chrV:16022760-16022840 1.0000 80 chrI:13418711-13418791 1.0000 80 chrI:1280235-1280315 1.0000 80 chrII:8137511-8137591 1.0000 80 chrI:14756452-14756532 1.0000 80 chrIII:5803114-5803194 1.0000 80 chrIV:13487157-13487237 1.0000 80 chrI:2487855-2487935 1.0000 80 chrIII:4986932-4987012 1.0000 80 chrIV:7816566-7816646 1.0000 80 chrI:1676023-1676103 1.0000 80 chrI:1213227-1213307 1.0000 80 chrIII:4905506-4905586 1.0000 80 chrI:5281830-5281910 1.0000 80 chrI:6760298-6760378 1.0000 80 chrI:4215778-4215858 1.0000 80 chrIII:10064293-10064373 1.0000 80 chrI:5659146-5659226 1.0000 80 chrIII:4343284-4343364 1.0000 80 chrIV:17099280-17099360 1.0000 80 chrV:20424945-20425025 1.0000 80 chrIII:10856995-10857075 1.0000 80 chrII:8927385-8927465 1.0000 80 chrIII:8144733-8144813 1.0000 80 chrI:2204814-2204894 1.0000 80 chrIV:11315038-11315118 1.0000 80 chrII:2991865-2991945 1.0000 80 chrX:2108389-2108469 1.0000 80 chrIII:13187898-13187978 1.0000 80 chrIV:4042389-4042469 1.0000 80 chrI:7251601-7251681 1.0000 80 chrIV:6747852-6747932 1.0000 80 chrIV:385230-385310 1.0000 80 chrI:10469066-10469146 1.0000 80 chrIII:11848480-11848560 1.0000 80 chrI:2871475-2871555 1.0000 80 chrIII:10811099-10811179 1.0000 80 chrIII:1540280-1540360 1.0000 80 chrII:15089579-15089659 1.0000 80 chrIV:8334105-8334185 1.0000 80 chrI:10161988-10162068 1.0000 80 chrX:3379241-3379321 1.0000 80 chrI:11222157-11222237 1.0000 80 chrIII:7199011-7199091 1.0000 80 chrV:6107612-6107692 1.0000 80 chrII:5836540-5836620 1.0000 80 chrX:7798503-7798583 1.0000 80 chrI:13421176-13421256 1.0000 80 chrV:14423384-14423464 1.0000 80 chrV:2603159-2603239 1.0000 80 chrIII:3476359-3476439 1.0000 80 chrI:12899351-12899431 1.0000 80 chrI:3176564-3176644 1.0000 80 chrII:3482384-3482464 1.0000 80 chrIII:9808329-9808409 1.0000 80 chrIII:2697379-2697459 1.0000 80 chrV:20090824-20090904 1.0000 80 chrIII:11286240-11286320 1.0000 80 chrI:8511428-8511508 1.0000 80 chrIV:16415775-16415855 1.0000 80 chrIII:3499995-3500075 1.0000 80 chrI:1034350-1034430 1.0000 80 chrIII:10857805-10857885 1.0000 80 chrIII:3322472-3322552 1.0000 80 chrIV:16995532-16995612 1.0000 80 chrV:10441284-10441364 1.0000 80 chrIII:11091823-11091903 1.0000 80 chrV:11933382-11933462 1.0000 80 chrII:10200924-10201004 1.0000 80 chrIII:10811302-10811382 1.0000 80 chrV:15082466-15082546 1.0000 80 chrII:15008823-15008903 1.0000 80 chrV:7084910-7084990 1.0000 80 chrI:4958860-4958940 1.0000 80 chrIII:11290709-11290789 1.0000 80 chrI:15014003-15014083 1.0000 80 chrII:2752714-2752794 1.0000 80 chrI:9393792-9393872 1.0000 80 chrV:18981147-18981227 1.0000 80 chrIII:8700707-8700787 1.0000 80 chrIII:4912483-4912563 1.0000 80 chrII:6383324-6383404 1.0000 80 chrII:6776815-6776895 1.0000 80 chrIV:12653241-12653321 1.0000 80 chrII:4791432-4791512 1.0000 80 chrIV:3803400-3803480 1.0000 80 chrI:8125441-8125521 1.0000 80 chrIV:1854042-1854122 1.0000 80 chrIV:8973676-8973756 1.0000 80 chrV:6830247-6830327 1.0000 80 chrI:4247548-4247628 1.0000 80 chrIII:8850828-8850908 1.0000 80 chrII:6097610-6097690 1.0000 80 chrIII:7858679-7858759 1.0000 80 chrII:484495-484575 1.0000 80 chrIV:16954588-16954668 1.0000 80 chrV:3218764-3218844 1.0000 80 chrV:11029457-11029537 1.0000 80 chrIV:6631998-6632078 1.0000 80 chrII:14857088-14857168 1.0000 80 chrIII:4862059-4862139 1.0000 80 chrV:10320319-10320399 1.0000 80 chrV:2127167-2127247 1.0000 80 chrIII:3540585-3540665 1.0000 80 chrIII:8529049-8529129 1.0000 80 chrIII:10123776-10123856 1.0000 80 chrII:6734815-6734895 1.0000 80 chrX:9917544-9917624 1.0000 80 chrIII:5068951-5069031 1.0000 80 chrIII:4196736-4196816 1.0000 80 chrII:2992731-2992811 1.0000 80 chrX:1853697-1853777 1.0000 80 chrII:6741603-6741683 1.0000 80 chrII:13117285-13117365 1.0000 80 chrV:14443585-14443665 1.0000 80 chrII:10247691-10247771 1.0000 80 chrII:12042353-12042433 1.0000 80 chrII:4603188-4603268 1.0000 80 chrIII:9465593-9465673 1.0000 80 chrI:5164984-5165064 1.0000 80 chrV:10526085-10526165 1.0000 80 chrV:13409218-13409298 1.0000 80 chrIII:4930432-4930512 1.0000 80 chrIII:5308390-5308470 1.0000 80 chrII:7072731-7072811 1.0000 80 chrII:6061661-6061741 1.0000 80 chrI:13422816-13422896 1.0000 80 chrV:5917856-5917936 1.0000 80 chrV:11644302-11644382 1.0000 80 chrIV:10085848-10085928 1.0000 80 chrI:10469265-10469345 1.0000 80 chrII:5511906-5511986 1.0000 80 chrIV:9777703-9777783 1.0000 80 chrII:9591235-9591315 1.0000 80 chrII:1134701-1134781 1.0000 80 chrII:10538116-10538196 1.0000 80 chrII:10714402-10714482 1.0000 80 chrX:16376132-16376212 1.0000 80 chrV:10178343-10178423 1.0000 80 chrI:10026032-10026112 1.0000 80 chrIV:13289498-13289578 1.0000 80 chrII:2451170-2451250 1.0000 80 chrIV:11020124-11020204 1.0000 80 chrIV:7486344-7486424 1.0000 80 chrII:6913461-6913541 1.0000 80 chrIII:11746879-11746959 1.0000 80 chrIII:7088070-7088150 1.0000 80 chrII:14144177-14144257 1.0000 80 chrI:77888-77968 1.0000 80 chrI:4967578-4967658 1.0000 80 chrIII:9868282-9868362 1.0000 80 chrI:853258-853338 1.0000 80 chrIV:11635799-11635879 1.0000 80 chrII:10547435-10547515 1.0000 80 chrII:476159-476239 1.0000 80 chrV:1197369-1197449 1.0000 80 chrI:1415972-1416052 1.0000 80 chrIII:5190331-5190411 1.0000 80 chrIII:5349411-5349491 1.0000 80 chrI:15052728-15052808 1.0000 80 chrV:16401682-16401762 1.0000 80 chrII:15232858-15232938 1.0000 80 chrII:8516929-8517009 1.0000 80 chrV:10356087-10356167 1.0000 80 chrIV:4171907-4171987 1.0000 80 chrIV:15526655-15526735 1.0000 80 chrII:9968446-9968526 1.0000 80 chrI:5106133-5106213 1.0000 80 chrIV:4702200-4702280 1.0000 80 chrV:11124085-11124165 1.0000 80 chrV:18720068-18720148 1.0000 80 chrI:2100018-2100098 1.0000 80 chrIII:12273763-12273843 1.0000 80 chrII:14528365-14528445 1.0000 80 chrV:14443784-14443864 1.0000 80 chrX:10852203-10852283 1.0000 80 chrV:20839594-20839674 1.0000 80 chrIV:4712598-4712678 1.0000 80 chrI:4936329-4936409 1.0000 80 chrIV:2033155-2033235 1.0000 80 chrV:2638663-2638743 1.0000 80 chrII:9931216-9931296 1.0000 80 chrI:13470393-13470473 1.0000 80 chrI:6407331-6407411 1.0000 80 chrI:3350032-3350112 1.0000 80 chrV:20832660-20832740 1.0000 80 chrII:10395590-10395670 1.0000 80 chrIV:410777-410857 1.0000 80 chrIII:640549-640629 1.0000 80 chrV:10736894-10736974 1.0000 80 chrV:9981047-9981127 1.0000 80 chrI:6446643-6446723 1.0000 80 chrV:1197575-1197655 1.0000 80 chrI:10642445-10642525 1.0000 80 chrIII:931568-931648 1.0000 80 chrIII:5603755-5603835 1.0000 80 chrII:4740129-4740209 1.0000 80 chrII:9308899-9308979 1.0000 80 chrV:4536021-4536101 1.0000 80 chrV:9536703-9536783 1.0000 80 chrI:1416193-1416273 1.0000 80 chrII:3502784-3502864 1.0000 80 chrI:9855460-9855540 1.0000 80 chrV:13715446-13715526 1.0000 80 chrIII:558956-559036 1.0000 80 chrIII:5108965-5109045 1.0000 80 chrV:7465694-7465774 1.0000 80 chrI:10474736-10474816 1.0000 80 chrIV:16415236-16415316 1.0000 80 chrII:7857723-7857803 1.0000 80 chrII:10872694-10872774 1.0000 80 chrI:27075-27155 1.0000 80 chrV:11933581-11933661 1.0000 80 chrII:11537562-11537642 1.0000 80 chrI:1823200-1823280 1.0000 80 chrI:11202404-11202484 1.0000 80 chrIII:5871936-5872016 1.0000 80 chrIII:10432299-10432379 1.0000 80 chrIV:410577-410657 1.0000 80 chrII:8039577-8039657 1.0000 80 chrIV:6206545-6206625 1.0000 80 chrIV:13783699-13783779 1.0000 80 chrII:66434-66514 1.0000 80 chrIII:13439562-13439642 1.0000 80 chrV:13556817-13556897 1.0000 80 chrI:7772609-7772689 1.0000 80 chrI:6252942-6253022 1.0000 80 chrIII:8319269-8319349 1.0000 80 chrII:11567383-11567463 1.0000 80 chrIV:9074375-9074455 1.0000 80 chrX:15849535-15849615 1.0000 80 chrIII:10460717-10460797 1.0000 80 chrV:13313209-13313289 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_tbx-7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/tbx-7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.263 C 0.232 G 0.229 T 0.277 Background letter frequencies (from file dataset with add-one prior applied): A 0.263 C 0.232 G 0.229 T 0.277 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CKHGGCCR MEME-1 width = 8 sites = 118 llr = 916 E-value = 2.3e-083 ******************************************************************************** -------------------------------------------------------------------------------- Motif CKHGGCCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :23::::5 pos.-specific C 8:5::aa: probability G 13:aa::4 matrix T 152::::1 bits 2.1 **** 1.9 **** 1.7 **** 1.5 **** Relative 1.3 * **** Entropy 1.1 * **** (11.2 bits) 0.9 * **** 0.6 * ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus GA G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKHGGCCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:13783699-13783779 36 2.07e-05 CGAAAAACTT CTCGGCCA TGAACATGTG chrIV:6206545-6206625 49 2.07e-05 CGTGCTGGTT CTCGGCCA TTTGGTGGGA chrIII:5108965-5109045 60 2.07e-05 TTTTTCTCTT CTCGGCCA GTTTATCGAG chrIV:4712598-4712678 24 2.07e-05 GGAGAAAATC CTCGGCCA CCCGGCCACG chrV:11124085-11124165 60 2.07e-05 TCTCGGGTTC CTCGGCCA TTTTTATCGG chrII:8516929-8517009 72 2.07e-05 AAAGAAAAAG CTCGGCCG C chrIII:5190331-5190411 61 2.07e-05 TTCTGTAGTT CTCGGCCG TGTACTCCTC chrIII:7088070-7088150 42 2.07e-05 AGGCGAATTT CTCGGCCA CCGCCTGGGG chrII:10538116-10538196 33 2.07e-05 ATAATTATTT CTCGGCCG TGTACTCCTC chrIII:8529049-8529129 63 2.07e-05 TTCTCTTTTA CTCGGCCA TGGCATACAT chrV:10320319-10320399 51 2.07e-05 CACGCGTTCT CTCGGCCA TGTACTCCTC chrII:14857088-14857168 49 2.07e-05 TCGCACACTT CTCGGCCA ttttttctat chrII:6097610-6097690 64 2.07e-05 GAGGGCATTC CTCGGCCA TATTACGAT chrII:4791432-4791512 39 2.07e-05 TAACATCCGA CTCGGCCG CCGGCCGTGT chrIII:4912483-4912563 44 2.07e-05 CATTCGGATT CTCGGCCG TGGCCTAGAA chrI:15014003-15014083 3 2.07e-05 CG CTCGGCCA GAGGACGAGT chrV:7084910-7084990 20 2.07e-05 AGAAACCAAC CTCGGCCG CACTGCGCCG chrV:20424945-20425025 68 2.07e-05 CTCCATTGCA CTCGGCCA CCACT chrI:5281830-5281910 11 2.07e-05 GAACGAATTT CTCGGCCA CGGCCATCAG chrIII:12673521-12673601 60 2.07e-05 GAGACCCCGA CTCGGCCA GGCAAGtttt chrV:2638663-2638743 45 3.78e-05 TTGCGGTGGC CGCGGCCG TGAAAATGCG chrV:16401682-16401762 32 3.78e-05 CTCTGGTGGC CGCGGCCG AGGTTTCTCC chrIII:9868282-9868362 49 3.78e-05 ACCTCTAGTC CGCGGCCA CCGGAAAAGC chrIII:4930432-4930512 44 3.78e-05 GTCAAATAGC CGCGGCCA CGGCCATGAG chrII:4603188-4603268 61 3.78e-05 AGAAAACCCT CGCGGCCG CAGTTGCCCG chrI:4247548-4247628 57 3.78e-05 TCCTAGGCCA CGCGGCCG CGTACTCCTC chrIV:8973676-8973756 64 3.78e-05 TCCTAGTCCG CGCGGCCG TGTAGTCCT chrIII:11286240-11286320 36 3.78e-05 TCCGGAGCCC CGCGGCCA CGGCCCCCAC chrIII:7199011-7199091 28 3.78e-05 TTCAAATGTG CGCGGCCA CGGCCACTGT chrI:11222157-11222237 36 3.78e-05 TCCACGGCCA CGCGGCCA CCGAATTTTA chrII:15089579-15089659 38 3.78e-05 TCCTAGGCCA CGCGGCCG TGTAGTCCTC chrV:13313209-13313289 40 6.13e-05 CAATCGATTT CTAGGCCG TCGGCCGTGT chrIII:8319269-8319349 57 6.13e-05 CATCACAATT CTAGGCCA TTTTCAAAGA chrV:13556817-13556897 39 6.13e-05 GCGGAGTTTT CTAGGCCA CCACTCAAGA chrII:10872694-10872774 31 6.13e-05 ACACGAAAAC CTAGGCCG GCGGCCGCCA chrI:10474736-10474816 70 6.13e-05 GTTCGAATTT CTAGGCCA CGA chrII:3502784-3502864 40 6.13e-05 TTGGAGTTTT CTAGGCCA CGAGTTGCAT chrII:4740129-4740209 55 6.13e-05 GTGCGAGTTT CTAGGCCA CGCGGAAATG chrIII:5603755-5603835 62 6.13e-05 GACGAGACAT CTAGGCCA TCGATGGTTT chrIII:12273763-12273843 43 6.13e-05 GTTGTGGTTT CTAGGCCA GGGGTTTTGT chrV:10356087-10356167 51 6.13e-05 GAGGGATATT CTAGGCCA TATGTAGCAA chrIII:5349411-5349491 51 6.13e-05 AAAAAGAAAG CTAGGCCA CCGATGCGGA chrII:6913461-6913541 44 6.13e-05 GGAGAGTTTT CTAGGCCG TGTGTGCCGC chrIV:9777703-9777783 27 6.13e-05 ATGGAGTTTT CTAGGCCA CATGAACACA chrII:5511906-5511986 20 6.13e-05 GCCATACTTT CTAGGCCA CCATTTAAAT chrIII:9465593-9465673 68 6.13e-05 TCAGCATTTT CTAGGCCA TTTCG chrII:13117285-13117365 30 6.13e-05 CCCCGAAATG CTAGGCCA CGCGTCGCGT chrX:9917544-9917624 13 6.13e-05 TGAGAGACAA CTAGGCCA CGGCCACAGG chrIII:4862059-4862139 10 6.13e-05 TATTCATTT CTAGGCCA CTGAAACAAA chrIII:8850828-8850908 28 6.13e-05 CGTGGAAATT CTAGGCCA CGGATAACTA chrV:18981147-18981227 41 6.13e-05 TCAGAGTTTC CTAGGCCA CCGCCGGTGT chrII:2752714-2752794 55 6.13e-05 CAGTGGAAAC CTAGGCCA CTGAAGGCGA chrV:15082466-15082546 37 6.13e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrI:1034350-1034430 41 6.13e-05 GCGCGGGTTT CTAGGCCA CGGCCACCGA chrI:8511428-8511508 29 6.13e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrX:2108389-2108469 25 6.13e-05 AGGGGGAATG CTAGGCCG TGCGCGGGAT chrI:5659146-5659226 27 6.13e-05 TTGTCGGTTC CTAGGCCA CCACCTCGTT chrV:156214-156294 35 6.13e-05 TTAAAGTTTC CTAGGCCA CGCGACCGTG chrI:5118930-5119010 40 6.13e-05 CATCAGAAAA CTAGGCCA TTTTTTCACA chrIII:5871936-5872016 6 1.46e-04 GAGTG CACGGCCG AGAAAAGTCC chrV:10736894-10736974 37 1.46e-04 AAACCTTTCC CGTGGCCG ACATTATTCT chrI:13470393-13470473 46 1.46e-04 GAGAGGACTA CACGGCCG GTGGCCTTGG chrIV:15526655-15526735 14 1.46e-04 GAGAGGACTA CACGGCCG AGATTCCGAC chrIV:4171907-4171987 45 1.46e-04 TAGAAACCTC CGTGGCCG AACAACAAGC chrII:2451170-2451250 37 1.46e-04 CGCCGGTGGC CGTGGCCG GCGGCCGAGG chrIV:13289498-13289578 49 1.46e-04 CTAGAATCTG CACGGCCG CGCGCGCGTG chrV:13409218-13409298 38 1.46e-04 GAGAGGAGTA CACGGCCG AGAATCACAA chrIV:12653241-12653321 45 1.46e-04 TCCTGGGTCT CGTGGCCG AGATTCCGAC chrIV:16415775-16415855 6 1.46e-04 GAGTA CACGGCCG AGTGGCCTAG chrI:3176564-3176644 43 1.46e-04 AAAGTTAGGC CACGGCCA CCACGGCCCC chrV:2603159-2603239 53 1.46e-04 CTTCCTCGTC CACGGCCA TGCGAAATGC chrI:10161988-10162068 16 1.46e-04 CGCTAGTGGC CGTGGCCG AACGCGCTGT chrIII:1540280-1540360 2 1.46e-04 C CGTGGCCG CGGCCTAGAA chrIV:4042389-4042469 54 1.46e-04 GCTCTTTTCT CGTGGCCG CGGCCTAGAA chrIII:4343284-4343364 23 1.46e-04 ACGAGGAGTA CACGGCCG ATGGACTAGG chrIII:5803114-5803194 26 1.46e-04 GCCTAGTTTT CACGGCCG AGAAATGTCA chrI:14756452-14756532 22 1.46e-04 AAACCTCGGT CACGGCCA TGCCACTTTT chrV:16022760-16022840 49 1.46e-04 GTGGTGGCCG CGTGGCCG CGGACTAAGT chrI:636773-636853 56 1.46e-04 CCTCCTAGTC CACGGCCG CGCACGATTT chrII:15232858-15232938 61 1.67e-04 CGCGGGGGGA CGCGGCCT CTGGACACCT chrV:10441284-10441364 1 1.67e-04 . CGCGGCCT AGAATCCGAC chrV:20090824-20090904 53 1.67e-04 ACACACTGGC CGCGGCCT AGAAAACTCC chrIII:8144733-8144813 46 1.67e-04 GTACACACAG CGCGGCCT GGTTTTCCAT chrII:9931216-9931296 27 1.89e-04 CCAGGATTTT CAAGGCCA TTTGCTCACA chrII:9968446-9968526 69 2.13e-04 CTGCGAGACC CATGGCCG TGGC chrIII:5308390-5308470 64 2.13e-04 GCCGGGAGGC CATGGCCG AGTTTTGAC chrX:3379241-3379321 51 2.13e-04 AAGATTTGCG CATGGCCG AGCCGGGAAG chrI:6760298-6760378 19 2.13e-04 CTAGTTTCCA CATGGCCG AGCTATCTCG chrIV:6631998-6632078 7 2.71e-04 TCTTCG GTCGGCCG TGGGTCGCGA chrII:3482384-3482464 12 2.71e-04 AAGAACCCCC GTCGGCCA TGTGGTGCAA chrIV:9074375-9074455 37 3.35e-04 TTTTGCCCGC GGCGGCCG CGTTTGTGAA chrII:8039577-8039657 42 3.35e-04 CATTTAAGTC TTCGGCCA CGTTGTCCTG chrIV:16415236-16415316 47 3.35e-04 TACACGGCAG CGTGGCCT AGAAAACTCT chrV:7465694-7465774 31 3.35e-04 TAGGCATGGA CGTGGCCT AGAATTCCCC chrV:9536703-9536783 14 3.35e-04 ATCACCCAAA CGTGGCCT AGCAATACCC chrX:16376132-16376212 37 3.35e-04 ATCGATTCGC CGTGGCCT AGAAACCGCG chrV:11644302-11644382 39 3.35e-04 GACCAATGGC CGTGGCCT AGCTTTCTTG chrI:5164984-5165064 51 3.35e-04 ACACAATGGC CGTGGCCT AAAAATCTCA chrII:10200924-10201004 23 3.35e-04 GGCCGATGGC CGTGGCCT AGGAAACACA chrV:6107612-6107692 56 3.35e-04 GAAACCGGGA CGTGGCCT AGCGTTCCGC chrIII:10064293-10064373 37 3.35e-04 CCGAGGTGGC CGTGGCCT AGAAGTGGCG chrIV:11315038-11315118 47 3.56e-04 TAGAATTTCG TGCGGCCG TGGCTGAGTT chrV:10526085-10526165 37 4.63e-04 GATAAAAAAG TTAGGCCA TCCTTTCTCA chrX:1853697-1853777 70 4.63e-04 CAATGAGATC TTAGGCCA CCA chrII:484495-484575 40 4.63e-04 GTGGAAAAAG TTAGGCCA TCACTTTTTA chrIV:3803400-3803480 57 4.63e-04 CCGGAGATTT TTAGGCCA CACGACCGTG chrII:8137511-8137591 36 4.63e-04 TGGTTTCCTG GTTGGCCA TTTTGTTAAA chrV:2127167-2127247 63 4.80e-04 TGCTAGTCCT CCCGGCCG TGTACTTCAC chrIII:5068951-5069031 23 5.86e-04 TAACCGCGGT TTTGGCCG CGGACTAGTG chrIII:11290709-11290789 24 5.86e-04 GTACACACCG GGTGGCCG AGTGGGGATT chrII:8927385-8927465 25 5.86e-04 TATTCTAACT GGTGGCCG AGAAATTCGC chrX:7798503-7798583 18 6.34e-04 ATATGGAGGG TGTGGCCG TGTAAGAGGG chrIII:4196736-4196816 32 6.88e-04 CTAGCTTTAC CCAGGCCA CCACATTCCT chrII:6776815-6776895 39 6.88e-04 CATTCCATGC GGCGGCCT AGAAAATTAT chrV:11029457-11029537 46 7.42e-04 TTTCGATTTC TGCGGCCT CGTCGAGCAT chrII:476159-476239 63 7.92e-04 GCTTGCCGAC GATGGCCG TGTGGGGGTT chrII:6061661-6061741 28 7.92e-04 GTACACGGCT GATGGCCG GGAAGTTTTC chrII:6383324-6383404 30 7.92e-04 AGTTTTTCCC GATGGCCG CGGACTAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKHGGCCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:13783699-13783779 2.1e-05 35_[+1]_37 chrIV:6206545-6206625 2.1e-05 48_[+1]_24 chrIII:5108965-5109045 2.1e-05 59_[+1]_13 chrIV:4712598-4712678 2.1e-05 23_[+1]_49 chrV:11124085-11124165 2.1e-05 59_[+1]_13 chrII:8516929-8517009 2.1e-05 71_[+1]_1 chrIII:5190331-5190411 2.1e-05 60_[+1]_12 chrIII:7088070-7088150 2.1e-05 41_[+1]_31 chrII:10538116-10538196 2.1e-05 32_[+1]_40 chrIII:8529049-8529129 2.1e-05 62_[+1]_10 chrV:10320319-10320399 2.1e-05 50_[+1]_22 chrII:14857088-14857168 2.1e-05 48_[+1]_24 chrII:6097610-6097690 2.1e-05 63_[+1]_9 chrII:4791432-4791512 2.1e-05 38_[+1]_34 chrIII:4912483-4912563 2.1e-05 43_[+1]_29 chrI:15014003-15014083 2.1e-05 2_[+1]_70 chrV:7084910-7084990 2.1e-05 19_[+1]_53 chrV:20424945-20425025 2.1e-05 67_[+1]_5 chrI:5281830-5281910 2.1e-05 10_[+1]_62 chrIII:12673521-12673601 2.1e-05 59_[+1]_13 chrV:2638663-2638743 3.8e-05 44_[+1]_28 chrV:16401682-16401762 3.8e-05 31_[+1]_41 chrIII:9868282-9868362 3.8e-05 48_[+1]_24 chrIII:4930432-4930512 3.8e-05 43_[+1]_29 chrII:4603188-4603268 3.8e-05 60_[+1]_12 chrI:4247548-4247628 3.8e-05 56_[+1]_16 chrIV:8973676-8973756 3.8e-05 63_[+1]_9 chrIII:11286240-11286320 3.8e-05 35_[+1]_37 chrIII:7199011-7199091 3.8e-05 27_[+1]_45 chrI:11222157-11222237 3.8e-05 35_[+1]_37 chrII:15089579-15089659 3.8e-05 37_[+1]_35 chrV:13313209-13313289 6.1e-05 39_[+1]_33 chrIII:8319269-8319349 6.1e-05 56_[+1]_16 chrV:13556817-13556897 6.1e-05 38_[+1]_34 chrII:10872694-10872774 6.1e-05 30_[+1]_42 chrI:10474736-10474816 6.1e-05 69_[+1]_3 chrII:3502784-3502864 6.1e-05 39_[+1]_33 chrII:4740129-4740209 6.1e-05 54_[+1]_18 chrIII:5603755-5603835 6.1e-05 61_[+1]_11 chrIII:12273763-12273843 6.1e-05 42_[+1]_30 chrV:10356087-10356167 6.1e-05 50_[+1]_22 chrIII:5349411-5349491 6.1e-05 50_[+1]_22 chrII:6913461-6913541 6.1e-05 43_[+1]_29 chrIV:9777703-9777783 6.1e-05 26_[+1]_46 chrII:5511906-5511986 6.1e-05 19_[+1]_53 chrIII:9465593-9465673 6.1e-05 67_[+1]_5 chrII:13117285-13117365 6.1e-05 29_[+1]_43 chrX:9917544-9917624 6.1e-05 12_[+1]_60 chrIII:4862059-4862139 6.1e-05 9_[+1]_63 chrIII:8850828-8850908 6.1e-05 27_[+1]_45 chrV:18981147-18981227 6.1e-05 40_[+1]_32 chrII:2752714-2752794 6.1e-05 54_[+1]_18 chrV:15082466-15082546 6.1e-05 36_[+1]_36 chrI:1034350-1034430 6.1e-05 40_[+1]_32 chrI:8511428-8511508 6.1e-05 28_[+1]_44 chrX:2108389-2108469 6.1e-05 24_[+1]_48 chrI:5659146-5659226 6.1e-05 26_[+1]_46 chrV:156214-156294 6.1e-05 34_[+1]_38 chrI:5118930-5119010 6.1e-05 39_[+1]_33 chrIII:5871936-5872016 0.00015 5_[+1]_67 chrV:10736894-10736974 0.00015 36_[+1]_36 chrI:13470393-13470473 0.00015 45_[+1]_27 chrIV:15526655-15526735 0.00015 13_[+1]_59 chrIV:4171907-4171987 0.00015 44_[+1]_28 chrII:2451170-2451250 0.00015 36_[+1]_36 chrIV:13289498-13289578 0.00015 48_[+1]_24 chrV:13409218-13409298 0.00015 37_[+1]_35 chrIV:12653241-12653321 0.00015 44_[+1]_28 chrIV:16415775-16415855 0.00015 5_[+1]_67 chrI:3176564-3176644 0.00015 42_[+1]_30 chrV:2603159-2603239 0.00015 52_[+1]_20 chrI:10161988-10162068 0.00015 15_[+1]_57 chrIII:1540280-1540360 0.00015 1_[+1]_71 chrIV:4042389-4042469 0.00015 53_[+1]_19 chrIII:4343284-4343364 0.00015 22_[+1]_50 chrIII:5803114-5803194 0.00015 25_[+1]_47 chrI:14756452-14756532 0.00015 21_[+1]_51 chrV:16022760-16022840 0.00015 48_[+1]_24 chrI:636773-636853 0.00015 55_[+1]_17 chrII:15232858-15232938 0.00017 60_[+1]_12 chrV:10441284-10441364 0.00017 [+1]_72 chrV:20090824-20090904 0.00017 52_[+1]_20 chrIII:8144733-8144813 0.00017 45_[+1]_27 chrII:9931216-9931296 0.00019 26_[+1]_46 chrII:9968446-9968526 0.00021 68_[+1]_4 chrIII:5308390-5308470 0.00021 63_[+1]_9 chrX:3379241-3379321 0.00021 50_[+1]_22 chrI:6760298-6760378 0.00021 18_[+1]_54 chrIV:6631998-6632078 0.00027 6_[+1]_66 chrII:3482384-3482464 0.00027 11_[+1]_61 chrIV:9074375-9074455 0.00034 36_[+1]_36 chrII:8039577-8039657 0.00034 41_[+1]_31 chrIV:16415236-16415316 0.00034 46_[+1]_26 chrV:7465694-7465774 0.00034 30_[+1]_42 chrV:9536703-9536783 0.00034 13_[+1]_59 chrX:16376132-16376212 0.00034 36_[+1]_36 chrV:11644302-11644382 0.00034 38_[+1]_34 chrI:5164984-5165064 0.00034 50_[+1]_22 chrII:10200924-10201004 0.00034 22_[+1]_50 chrV:6107612-6107692 0.00034 55_[+1]_17 chrIII:10064293-10064373 0.00034 36_[+1]_36 chrIV:11315038-11315118 0.00036 46_[+1]_26 chrV:10526085-10526165 0.00046 36_[+1]_36 chrX:1853697-1853777 0.00046 69_[+1]_3 chrII:484495-484575 0.00046 39_[+1]_33 chrIV:3803400-3803480 0.00046 56_[+1]_16 chrII:8137511-8137591 0.00046 35_[+1]_37 chrV:2127167-2127247 0.00048 62_[+1]_10 chrIII:5068951-5069031 0.00059 22_[+1]_50 chrIII:11290709-11290789 0.00059 23_[+1]_49 chrII:8927385-8927465 0.00059 24_[+1]_48 chrX:7798503-7798583 0.00063 17_[+1]_55 chrIII:4196736-4196816 0.00069 31_[+1]_41 chrII:6776815-6776895 0.00069 38_[+1]_34 chrV:11029457-11029537 0.00074 45_[+1]_27 chrII:476159-476239 0.00079 62_[+1]_10 chrII:6061661-6061741 0.00079 27_[+1]_45 chrII:6383324-6383404 0.00079 29_[+1]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKHGGCCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CKHGGCCR width=8 seqs=118 chrIV:13783699-13783779 ( 36) CTCGGCCA 1 chrIV:6206545-6206625 ( 49) CTCGGCCA 1 chrIII:5108965-5109045 ( 60) CTCGGCCA 1 chrIV:4712598-4712678 ( 24) CTCGGCCA 1 chrV:11124085-11124165 ( 60) CTCGGCCA 1 chrII:8516929-8517009 ( 72) CTCGGCCG 1 chrIII:5190331-5190411 ( 61) CTCGGCCG 1 chrIII:7088070-7088150 ( 42) CTCGGCCA 1 chrII:10538116-10538196 ( 33) CTCGGCCG 1 chrIII:8529049-8529129 ( 63) CTCGGCCA 1 chrV:10320319-10320399 ( 51) CTCGGCCA 1 chrII:14857088-14857168 ( 49) CTCGGCCA 1 chrII:6097610-6097690 ( 64) CTCGGCCA 1 chrII:4791432-4791512 ( 39) CTCGGCCG 1 chrIII:4912483-4912563 ( 44) CTCGGCCG 1 chrI:15014003-15014083 ( 3) CTCGGCCA 1 chrV:7084910-7084990 ( 20) CTCGGCCG 1 chrV:20424945-20425025 ( 68) CTCGGCCA 1 chrI:5281830-5281910 ( 11) CTCGGCCA 1 chrIII:12673521-12673601 ( 60) CTCGGCCA 1 chrV:2638663-2638743 ( 45) CGCGGCCG 1 chrV:16401682-16401762 ( 32) CGCGGCCG 1 chrIII:9868282-9868362 ( 49) CGCGGCCA 1 chrIII:4930432-4930512 ( 44) CGCGGCCA 1 chrII:4603188-4603268 ( 61) CGCGGCCG 1 chrI:4247548-4247628 ( 57) CGCGGCCG 1 chrIV:8973676-8973756 ( 64) CGCGGCCG 1 chrIII:11286240-11286320 ( 36) CGCGGCCA 1 chrIII:7199011-7199091 ( 28) CGCGGCCA 1 chrI:11222157-11222237 ( 36) CGCGGCCA 1 chrII:15089579-15089659 ( 38) CGCGGCCG 1 chrV:13313209-13313289 ( 40) CTAGGCCG 1 chrIII:8319269-8319349 ( 57) CTAGGCCA 1 chrV:13556817-13556897 ( 39) CTAGGCCA 1 chrII:10872694-10872774 ( 31) CTAGGCCG 1 chrI:10474736-10474816 ( 70) CTAGGCCA 1 chrII:3502784-3502864 ( 40) CTAGGCCA 1 chrII:4740129-4740209 ( 55) CTAGGCCA 1 chrIII:5603755-5603835 ( 62) CTAGGCCA 1 chrIII:12273763-12273843 ( 43) CTAGGCCA 1 chrV:10356087-10356167 ( 51) CTAGGCCA 1 chrIII:5349411-5349491 ( 51) CTAGGCCA 1 chrII:6913461-6913541 ( 44) CTAGGCCG 1 chrIV:9777703-9777783 ( 27) CTAGGCCA 1 chrII:5511906-5511986 ( 20) CTAGGCCA 1 chrIII:9465593-9465673 ( 68) CTAGGCCA 1 chrII:13117285-13117365 ( 30) CTAGGCCA 1 chrX:9917544-9917624 ( 13) CTAGGCCA 1 chrIII:4862059-4862139 ( 10) CTAGGCCA 1 chrIII:8850828-8850908 ( 28) CTAGGCCA 1 chrV:18981147-18981227 ( 41) CTAGGCCA 1 chrII:2752714-2752794 ( 55) CTAGGCCA 1 chrV:15082466-15082546 ( 37) CTAGGCCG 1 chrI:1034350-1034430 ( 41) CTAGGCCA 1 chrI:8511428-8511508 ( 29) CTAGGCCA 1 chrX:2108389-2108469 ( 25) CTAGGCCG 1 chrI:5659146-5659226 ( 27) CTAGGCCA 1 chrV:156214-156294 ( 35) CTAGGCCA 1 chrI:5118930-5119010 ( 40) CTAGGCCA 1 chrIII:5871936-5872016 ( 6) CACGGCCG 1 chrV:10736894-10736974 ( 37) CGTGGCCG 1 chrI:13470393-13470473 ( 46) CACGGCCG 1 chrIV:15526655-15526735 ( 14) CACGGCCG 1 chrIV:4171907-4171987 ( 45) CGTGGCCG 1 chrII:2451170-2451250 ( 37) CGTGGCCG 1 chrIV:13289498-13289578 ( 49) CACGGCCG 1 chrV:13409218-13409298 ( 38) CACGGCCG 1 chrIV:12653241-12653321 ( 45) CGTGGCCG 1 chrIV:16415775-16415855 ( 6) CACGGCCG 1 chrI:3176564-3176644 ( 43) CACGGCCA 1 chrV:2603159-2603239 ( 53) CACGGCCA 1 chrI:10161988-10162068 ( 16) CGTGGCCG 1 chrIII:1540280-1540360 ( 2) CGTGGCCG 1 chrIV:4042389-4042469 ( 54) CGTGGCCG 1 chrIII:4343284-4343364 ( 23) CACGGCCG 1 chrIII:5803114-5803194 ( 26) CACGGCCG 1 chrI:14756452-14756532 ( 22) CACGGCCA 1 chrV:16022760-16022840 ( 49) CGTGGCCG 1 chrI:636773-636853 ( 56) CACGGCCG 1 chrII:15232858-15232938 ( 61) CGCGGCCT 1 chrV:10441284-10441364 ( 1) CGCGGCCT 1 chrV:20090824-20090904 ( 53) CGCGGCCT 1 chrIII:8144733-8144813 ( 46) CGCGGCCT 1 chrII:9931216-9931296 ( 27) CAAGGCCA 1 chrII:9968446-9968526 ( 69) CATGGCCG 1 chrIII:5308390-5308470 ( 64) CATGGCCG 1 chrX:3379241-3379321 ( 51) CATGGCCG 1 chrI:6760298-6760378 ( 19) CATGGCCG 1 chrIV:6631998-6632078 ( 7) GTCGGCCG 1 chrII:3482384-3482464 ( 12) GTCGGCCA 1 chrIV:9074375-9074455 ( 37) GGCGGCCG 1 chrII:8039577-8039657 ( 42) TTCGGCCA 1 chrIV:16415236-16415316 ( 47) CGTGGCCT 1 chrV:7465694-7465774 ( 31) CGTGGCCT 1 chrV:9536703-9536783 ( 14) CGTGGCCT 1 chrX:16376132-16376212 ( 37) CGTGGCCT 1 chrV:11644302-11644382 ( 39) CGTGGCCT 1 chrI:5164984-5165064 ( 51) CGTGGCCT 1 chrII:10200924-10201004 ( 23) CGTGGCCT 1 chrV:6107612-6107692 ( 56) CGTGGCCT 1 chrIII:10064293-10064373 ( 37) CGTGGCCT 1 chrIV:11315038-11315118 ( 47) TGCGGCCG 1 chrV:10526085-10526165 ( 37) TTAGGCCA 1 chrX:1853697-1853777 ( 70) TTAGGCCA 1 chrII:484495-484575 ( 40) TTAGGCCA 1 chrIV:3803400-3803480 ( 57) TTAGGCCA 1 chrII:8137511-8137591 ( 36) GTTGGCCA 1 chrV:2127167-2127247 ( 63) CCCGGCCG 1 chrIII:5068951-5069031 ( 23) TTTGGCCG 1 chrIII:11290709-11290789 ( 24) GGTGGCCG 1 chrII:8927385-8927465 ( 25) GGTGGCCG 1 chrX:7798503-7798583 ( 18) TGTGGCCG 1 chrIII:4196736-4196816 ( 32) CCAGGCCA 1 chrII:6776815-6776895 ( 39) GGCGGCCT 1 chrV:11029457-11029537 ( 46) TGCGGCCT 1 chrII:476159-476239 ( 63) GATGGCCG 1 chrII:6061661-6061741 ( 28) GATGGCCG 1 chrII:6383324-6383404 ( 30) GATGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKHGGCCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.92472 E= 2.3e-083 -1353 186 -143 -186 -63 -377 53 80 13 101 -1353 -17 -1353 -1353 213 -1353 -1353 -1353 213 -1353 -1353 211 -1353 -1353 -1353 211 -1353 -1353 80 -1353 86 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKHGGCCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 2.3e-083 0.000000 0.838983 0.084746 0.076271 0.169492 0.016949 0.330508 0.483051 0.288136 0.466102 0.000000 0.245763 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.457627 0.000000 0.415254 0.127119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKHGGCCR MEME-1 regular expression -------------------------------------------------------------------------------- C[TG][CAT]GGCC[AG] -------------------------------------------------------------------------------- Time 6.21 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCKAG MEME-2 width = 8 sites = 57 llr = 505 E-value = 2.2e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1::a1 pos.-specific C 1::9a::: probability G :a9::4:8 matrix T 9:1::6:1 bits 2.1 * * 1.9 * * * 1.7 ** * * 1.5 **** * Relative 1.3 ***** ** Entropy 1.1 ******** (12.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCTAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13439562-13439642 24 1.30e-05 AAAATATCGG TGGCCTAG TGGCCGTGGA chrV:10736894-10736974 19 1.30e-05 AAACTTGAAT TGGCCTAG AAACCTTTCC chrIV:13289498-13289578 35 1.30e-05 GTTTGAACGG TGGCCTAG AATCTGCACG chrIII:5308390-5308470 35 1.30e-05 TCACCAACAA TGGCCTAG AACCACCGGT chrIII:4930432-4930512 3 1.30e-05 GT TGGCCTAG TAAATGCGTG chrI:5164984-5165064 31 1.30e-05 GTTTGCACCA TGGCCTAG AAACACAATG chrIII:9465593-9465673 40 1.30e-05 ACGAGCGCGT TGGCCTAG AAAACGCATG chrIII:4196736-4196816 18 1.30e-05 CAGGATCCAA TGGCCTAG CTTTACCCAG chrIII:8529049-8529129 43 1.30e-05 GAATCGTCGC TGGCCTAG TTTTCTCTTT chrV:2127167-2127247 30 1.30e-05 CTCCTGTGAA TGGCCTAG AAATTGTGGC chrII:6383324-6383404 14 1.30e-05 TTCGCCAAGA TGGCCTAG TTTTTCCCGA chrIII:4912483-4912563 52 1.30e-05 TTCTCGGCCG TGGCCTAG AATATTAGTC chrI:9393792-9393872 29 1.30e-05 CACGACATGC TGGCCTAG AAACCTCTGC chrII:2752714-2752794 37 1.30e-05 CGATTGCGCG TGGCCTAG CAGTGGAAAC chrV:7084910-7084990 4 1.30e-05 GGC TGGCCTAG AAACCAACCT chrIV:16415775-16415855 16 1.30e-05 CACGGCCGAG TGGCCTAG GAAACTCTTG chrIII:7199011-7199091 6 1.30e-05 ACCAT TGGCCTAG AAAATTCAAA chrV:20424945-20425025 29 1.30e-05 TTCCCAATGG TGGCCTAG AAAACCCCGA chrIV:7816566-7816646 24 1.30e-05 CACCACCGTG TGGCCTAG GAAACTCTTG chrIII:5803114-5803194 14 1.30e-05 GTGGCCGCGG TGGCCTAG TTTTCACGGC chrI:636773-636853 32 1.30e-05 AACATGGCCG TGGCCTAG CGTTCCCCTC chrI:5118930-5119010 1 1.30e-05 . TGGCCTAG AATTTCAACT chrIII:5108965-5109045 26 2.38e-05 TTGGAAACGA TGGCCGAG TCTGAATGGC chrIII:5603755-5603835 34 2.38e-05 TAGGCGCGCG TGGCCGAG AAGGAGGCGA chrII:14857088-14857168 6 2.38e-05 TGCGG TGGCCGAG TCCCTGCCGG chrIII:10064293-10064373 24 2.38e-05 AAATCAAGCC TGGCCGAG GTGGCCGTGG chrIII:12673521-12673601 45 2.38e-05 CACGGCGTGG TGGCCGAG ACCCCGACTC chrIV:4171907-4171987 30 4.95e-05 TTTCTGCCCG CGGCCTAG AAACCTCCGT chrII:15232858-15232938 39 4.95e-05 CAATGCGTGA CGGCCTAG AAAACGCGGG chrV:6107612-6107692 38 4.95e-05 AGACACCAAA TGGACTAG GAAACCGGGA chrIII:1540280-1540360 10 4.95e-05 CCGTGGCCG CGGCCTAG AAATCCCAAC chrIV:4042389-4042469 62 4.95e-05 CTCGTGGCCG CGGCCTAG AAATCCCGCT chrIV:11315038-11315118 32 4.95e-05 ACACGCAACA TGGACTAG AATTTCGTGC chrIII:4343284-4343364 32 4.95e-05 ACACGGCCGA TGGACTAG GAACACACTG chrI:6760298-6760378 5 4.95e-05 CTCG TGGACTAG TTTCCACATG chrII:2451170-2451250 46 7.08e-05 CCGTGGCCGG CGGCCGAG GATTTGCGGC chrV:5917856-5917936 35 7.08e-05 CACGGTCGTG TGGACGAG GAAGCAAATG chrII:4603188-4603268 45 7.08e-05 ACACACGAGG TGGACGAG AAAACCCTCG chrII:6097610-6097690 32 7.08e-05 GAGGAGTACA CGGCCGAG CATGCTCCGC chrIII:11286240-11286320 16 7.08e-05 AATGTCGAGA TGGACGAG GTTCCGGAGC chrX:1853697-1853777 44 8.58e-05 CCTTTCAGAA TGGCCTAA CAAGAGACCA chrII:4791432-4791512 24 8.58e-05 CCGCGCACTG TGGCCTAA CATCCGACTC chrIV:13783699-13783779 22 1.14e-04 ACCTTGGCCT TGGCCGAA AAACTTCTCG chrIII:5068951-5069031 45 1.14e-04 CTAGTGTTTA TGGCCGAA GAAATGCACA chrX:3379241-3379321 35 1.14e-04 ACGTGCGCGA TGGCCGAA GATTTGCGCA chrIV:16415236-16415316 24 1.27e-04 TTTATCCCAT TGTCCGAG AGGAGTACAC chrIII:5349411-5349491 11 1.27e-04 ACAAAAATGC TGTCCGAG AGGAGTCCGC chrII:6913461-6913541 5 1.27e-04 TTAT TGTCCGAG AGGAGTACAC chrV:13409218-13409298 23 1.27e-04 ATTAACTAAT TGTCCGAG AGGAGTACAC chrIII:11290709-11290789 2 1.27e-04 T TGTCCGAG AGGAGTACAC chrIII:8144733-8144813 24 1.27e-04 GTATTGGCTC TGTCCGAG AGGAGTACAC chrII:10538116-10538196 17 1.56e-04 GAGGAGTACA TGGCCGAT AATTATTTCT chrV:10526085-10526165 22 1.56e-04 ACACGGCGGA TGGCCGAT AAAAAAGTTA chrII:10200924-10201004 12 1.56e-04 TCGGCTCTGG TGGCCGAT GGCCGTGGCC chrIII:4986932-4987012 33 1.56e-04 AGAGGAGAAA TGGCCGAT TTTACCCTCC chrII:3502784-3502864 22 1.88e-04 TTCCTCTTCG GGGCCGAG TTGGAGTTTT chrV:11029457-11029537 19 2.28e-04 ACACTAGTGG TGGACTAA CTATCCCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13439562-13439642 1.3e-05 23_[+2]_49 chrV:10736894-10736974 1.3e-05 18_[+2]_54 chrIV:13289498-13289578 1.3e-05 34_[+2]_38 chrIII:5308390-5308470 1.3e-05 34_[+2]_38 chrIII:4930432-4930512 1.3e-05 2_[+2]_70 chrI:5164984-5165064 1.3e-05 30_[+2]_42 chrIII:9465593-9465673 1.3e-05 39_[+2]_33 chrIII:4196736-4196816 1.3e-05 17_[+2]_55 chrIII:8529049-8529129 1.3e-05 42_[+2]_30 chrV:2127167-2127247 1.3e-05 29_[+2]_43 chrII:6383324-6383404 1.3e-05 13_[+2]_59 chrIII:4912483-4912563 1.3e-05 51_[+2]_21 chrI:9393792-9393872 1.3e-05 28_[+2]_44 chrII:2752714-2752794 1.3e-05 36_[+2]_36 chrV:7084910-7084990 1.3e-05 3_[+2]_69 chrIV:16415775-16415855 1.3e-05 15_[+2]_57 chrIII:7199011-7199091 1.3e-05 5_[+2]_67 chrV:20424945-20425025 1.3e-05 28_[+2]_44 chrIV:7816566-7816646 1.3e-05 23_[+2]_49 chrIII:5803114-5803194 1.3e-05 13_[+2]_59 chrI:636773-636853 1.3e-05 31_[+2]_41 chrI:5118930-5119010 1.3e-05 [+2]_72 chrIII:5108965-5109045 2.4e-05 25_[+2]_47 chrIII:5603755-5603835 2.4e-05 33_[+2]_39 chrII:14857088-14857168 2.4e-05 5_[+2]_67 chrIII:10064293-10064373 2.4e-05 23_[+2]_49 chrIII:12673521-12673601 2.4e-05 44_[+2]_28 chrIV:4171907-4171987 5e-05 29_[+2]_43 chrII:15232858-15232938 5e-05 38_[+2]_34 chrV:6107612-6107692 5e-05 37_[+2]_35 chrIII:1540280-1540360 5e-05 9_[+2]_63 chrIV:4042389-4042469 5e-05 61_[+2]_11 chrIV:11315038-11315118 5e-05 31_[+2]_41 chrIII:4343284-4343364 5e-05 31_[+2]_41 chrI:6760298-6760378 5e-05 4_[+2]_68 chrII:2451170-2451250 7.1e-05 45_[+2]_27 chrV:5917856-5917936 7.1e-05 34_[+2]_38 chrII:4603188-4603268 7.1e-05 44_[+2]_28 chrII:6097610-6097690 7.1e-05 31_[+2]_41 chrIII:11286240-11286320 7.1e-05 15_[+2]_57 chrX:1853697-1853777 8.6e-05 43_[+2]_29 chrII:4791432-4791512 8.6e-05 23_[+2]_49 chrIV:13783699-13783779 0.00011 21_[+2]_51 chrIII:5068951-5069031 0.00011 44_[+2]_28 chrX:3379241-3379321 0.00011 34_[+2]_38 chrIV:16415236-16415316 0.00013 23_[+2]_49 chrIII:5349411-5349491 0.00013 10_[+2]_62 chrII:6913461-6913541 0.00013 4_[+2]_68 chrV:13409218-13409298 0.00013 22_[+2]_50 chrIII:11290709-11290789 0.00013 1_[+2]_71 chrIII:8144733-8144813 0.00013 23_[+2]_49 chrII:10538116-10538196 0.00016 16_[+2]_56 chrV:10526085-10526165 0.00016 21_[+2]_51 chrII:10200924-10201004 0.00016 11_[+2]_61 chrIII:4986932-4987012 0.00016 32_[+2]_40 chrII:3502784-3502864 0.00019 21_[+2]_51 chrV:11029457-11029537 0.00023 18_[+2]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCKAG width=8 seqs=57 chrIII:13439562-13439642 ( 24) TGGCCTAG 1 chrV:10736894-10736974 ( 19) TGGCCTAG 1 chrIV:13289498-13289578 ( 35) TGGCCTAG 1 chrIII:5308390-5308470 ( 35) TGGCCTAG 1 chrIII:4930432-4930512 ( 3) TGGCCTAG 1 chrI:5164984-5165064 ( 31) TGGCCTAG 1 chrIII:9465593-9465673 ( 40) TGGCCTAG 1 chrIII:4196736-4196816 ( 18) TGGCCTAG 1 chrIII:8529049-8529129 ( 43) TGGCCTAG 1 chrV:2127167-2127247 ( 30) TGGCCTAG 1 chrII:6383324-6383404 ( 14) TGGCCTAG 1 chrIII:4912483-4912563 ( 52) TGGCCTAG 1 chrI:9393792-9393872 ( 29) TGGCCTAG 1 chrII:2752714-2752794 ( 37) TGGCCTAG 1 chrV:7084910-7084990 ( 4) TGGCCTAG 1 chrIV:16415775-16415855 ( 16) TGGCCTAG 1 chrIII:7199011-7199091 ( 6) TGGCCTAG 1 chrV:20424945-20425025 ( 29) TGGCCTAG 1 chrIV:7816566-7816646 ( 24) TGGCCTAG 1 chrIII:5803114-5803194 ( 14) TGGCCTAG 1 chrI:636773-636853 ( 32) TGGCCTAG 1 chrI:5118930-5119010 ( 1) TGGCCTAG 1 chrIII:5108965-5109045 ( 26) TGGCCGAG 1 chrIII:5603755-5603835 ( 34) TGGCCGAG 1 chrII:14857088-14857168 ( 6) TGGCCGAG 1 chrIII:10064293-10064373 ( 24) TGGCCGAG 1 chrIII:12673521-12673601 ( 45) TGGCCGAG 1 chrIV:4171907-4171987 ( 30) CGGCCTAG 1 chrII:15232858-15232938 ( 39) CGGCCTAG 1 chrV:6107612-6107692 ( 38) TGGACTAG 1 chrIII:1540280-1540360 ( 10) CGGCCTAG 1 chrIV:4042389-4042469 ( 62) CGGCCTAG 1 chrIV:11315038-11315118 ( 32) TGGACTAG 1 chrIII:4343284-4343364 ( 32) TGGACTAG 1 chrI:6760298-6760378 ( 5) TGGACTAG 1 chrII:2451170-2451250 ( 46) CGGCCGAG 1 chrV:5917856-5917936 ( 35) TGGACGAG 1 chrII:4603188-4603268 ( 45) TGGACGAG 1 chrII:6097610-6097690 ( 32) CGGCCGAG 1 chrIII:11286240-11286320 ( 16) TGGACGAG 1 chrX:1853697-1853777 ( 44) TGGCCTAA 1 chrII:4791432-4791512 ( 24) TGGCCTAA 1 chrIV:13783699-13783779 ( 22) TGGCCGAA 1 chrIII:5068951-5069031 ( 45) TGGCCGAA 1 chrX:3379241-3379321 ( 35) TGGCCGAA 1 chrIV:16415236-16415316 ( 24) TGTCCGAG 1 chrIII:5349411-5349491 ( 11) TGTCCGAG 1 chrII:6913461-6913541 ( 5) TGTCCGAG 1 chrV:13409218-13409298 ( 23) TGTCCGAG 1 chrIII:11290709-11290789 ( 2) TGTCCGAG 1 chrIII:8144733-8144813 ( 24) TGTCCGAG 1 chrII:10538116-10538196 ( 17) TGGCCGAT 1 chrV:10526085-10526165 ( 22) TGGCCGAT 1 chrII:10200924-10201004 ( 12) TGGCCGAT 1 chrIII:4986932-4987012 ( 33) TGGCCGAT 1 chrII:3502784-3502864 ( 22) GGGCCGAG 1 chrV:11029457-11029537 ( 19) TGGACTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.94323 E= 2.2e-038 -1248 -114 -370 166 -1248 -1248 213 -1248 -1248 -1248 197 -139 -90 189 -1248 -1248 -1248 211 -1248 -1248 -1248 -1248 88 107 193 -1248 -1248 -1248 -132 -1248 185 -198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 2.2e-038 0.000000 0.105263 0.017544 0.877193 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.894737 0.105263 0.140351 0.859649 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.421053 0.578947 1.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.824561 0.070175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-2 regular expression -------------------------------------------------------------------------------- TGGCC[TG]AG -------------------------------------------------------------------------------- Time 9.63 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTCCTCT MEME-3 width = 8 sites = 24 llr = 243 E-value = 1.4e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTCCTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :9:aa:a: probability G :::::::1 matrix T :1a::a:9 bits 2.1 ** * 1.9 ***** 1.7 * ***** 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTCCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10736894-10736974 63 1.62e-05 CTGAGAATGT ACTCCTCT CGAACAACAT chrV:2638663-2638743 71 1.62e-05 CGCGCTGCGG ACTCCTCT CA chrV:16401682-16401762 58 1.62e-05 CCGCGCTCGG ACTCCTCT CGGAGGAGTA chrIII:5190331-5190411 72 1.62e-05 TCGGCCGTGT ACTCCTCT C chrIII:7088070-7088150 60 1.62e-05 CCGCCTGGGG ACTCCTCT TGGGCAATTT chrIII:11746879-11746959 67 1.62e-05 CCGCAGGTGT ACTCCTCT CGGAAA chrII:10538116-10538196 44 1.62e-05 TCGGCCGTGT ACTCCTCT CGGGCAATTA chrII:9591235-9591315 61 1.62e-05 CGCGTCGTGT ACTCCTCT CAGACAAACA chrII:13117285-13117365 48 1.62e-05 CGCGTCGCGT ACTCCTCT CGGATAACGA chrIII:5068951-5069031 69 1.62e-05 CACAGTGTGT ACTCCTCT CGGA chrV:10320319-10320399 62 1.62e-05 TCGGCCATGT ACTCCTCT CGGACAAACA chrII:4791432-4791512 57 1.62e-05 CCGGCCGTGT ACTCCTCT CGGACAATAT chrII:6776815-6776895 65 1.62e-05 ATGGACGCGT ACTCCTCT CGGACGAT chrV:18981147-18981227 59 1.62e-05 CCGCCGGTGT ACTCCTCT CCGACAACGG chrI:6760298-6760378 40 1.62e-05 TATCTCGTGT ACTCCTCT CGAACATCGA chrV:156214-156294 54 1.62e-05 GCGACCGTGT ACTCCTCT CGGACAAACA chrI:13422611-13422691 57 1.62e-05 GATCCACAAA ACTCCTCT TTTTGTGAAA chrV:13313209-13313289 58 2.96e-05 TCGGCCGTGT ACTCCTCG TGAAATATTT chrI:4247548-4247628 68 2.96e-05 GCGGCCGCGT ACTCCTCG AGGAC chrI:10161988-10162068 57 2.96e-05 TCATGTATGT ACTCCTCG TGGACTAATC chrI:9855460-9855540 63 4.89e-05 CTTCCTGCCG ATTCCTCT CTCGATGTCT chrIII:4196736-4196816 44 4.89e-05 AGGCCACCAC ATTCCTCT GTGTTACCCG chrI:2710645-2710725 64 4.89e-05 CAAATCTAAC ATTCCTCT AAGAGACCT chrII:9931216-9931296 8 6.60e-05 GAGGAAT TCTCCTCT TCCAGGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10736894-10736974 1.6e-05 62_[+3]_10 chrV:2638663-2638743 1.6e-05 70_[+3]_2 chrV:16401682-16401762 1.6e-05 57_[+3]_15 chrIII:5190331-5190411 1.6e-05 71_[+3]_1 chrIII:7088070-7088150 1.6e-05 59_[+3]_13 chrIII:11746879-11746959 1.6e-05 66_[+3]_6 chrII:10538116-10538196 1.6e-05 43_[+3]_29 chrII:9591235-9591315 1.6e-05 60_[+3]_12 chrII:13117285-13117365 1.6e-05 47_[+3]_25 chrIII:5068951-5069031 1.6e-05 68_[+3]_4 chrV:10320319-10320399 1.6e-05 61_[+3]_11 chrII:4791432-4791512 1.6e-05 56_[+3]_16 chrII:6776815-6776895 1.6e-05 64_[+3]_8 chrV:18981147-18981227 1.6e-05 58_[+3]_14 chrI:6760298-6760378 1.6e-05 39_[+3]_33 chrV:156214-156294 1.6e-05 53_[+3]_19 chrI:13422611-13422691 1.6e-05 56_[+3]_16 chrV:13313209-13313289 3e-05 57_[+3]_15 chrI:4247548-4247628 3e-05 67_[+3]_5 chrI:10161988-10162068 3e-05 56_[+3]_16 chrI:9855460-9855540 4.9e-05 62_[+3]_10 chrIII:4196736-4196816 4.9e-05 43_[+3]_29 chrI:2710645-2710725 4.9e-05 63_[+3]_9 chrII:9931216-9931296 6.6e-05 7_[+3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTCCTCT width=8 seqs=24 chrV:10736894-10736974 ( 63) ACTCCTCT 1 chrV:2638663-2638743 ( 71) ACTCCTCT 1 chrV:16401682-16401762 ( 58) ACTCCTCT 1 chrIII:5190331-5190411 ( 72) ACTCCTCT 1 chrIII:7088070-7088150 ( 60) ACTCCTCT 1 chrIII:11746879-11746959 ( 67) ACTCCTCT 1 chrII:10538116-10538196 ( 44) ACTCCTCT 1 chrII:9591235-9591315 ( 61) ACTCCTCT 1 chrII:13117285-13117365 ( 48) ACTCCTCT 1 chrIII:5068951-5069031 ( 69) ACTCCTCT 1 chrV:10320319-10320399 ( 62) ACTCCTCT 1 chrII:4791432-4791512 ( 57) ACTCCTCT 1 chrII:6776815-6776895 ( 65) ACTCCTCT 1 chrV:18981147-18981227 ( 59) ACTCCTCT 1 chrI:6760298-6760378 ( 40) ACTCCTCT 1 chrV:156214-156294 ( 54) ACTCCTCT 1 chrI:13422611-13422691 ( 57) ACTCCTCT 1 chrV:13313209-13313289 ( 58) ACTCCTCG 1 chrI:4247548-4247628 ( 68) ACTCCTCG 1 chrI:10161988-10162068 ( 57) ACTCCTCG 1 chrI:9855460-9855540 ( 63) ATTCCTCT 1 chrIII:4196736-4196816 ( 44) ATTCCTCT 1 chrI:2710645-2710725 ( 64) ATTCCTCT 1 chrII:9931216-9931296 ( 8) TCTCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.2272 E= 1.4e-012 187 -1123 -1123 -273 -1123 192 -1123 -115 -1123 -1123 -1123 185 -1123 211 -1123 -1123 -1123 211 -1123 -1123 -1123 -1123 -1123 185 -1123 211 -1123 -1123 -1123 -1123 -87 166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.4e-012 0.958333 0.000000 0.000000 0.041667 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCCTCT MEME-3 regular expression -------------------------------------------------------------------------------- ACTCCTCT -------------------------------------------------------------------------------- Time 13.06 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGTACA MEME-4 width = 8 sites = 21 llr = 217 E-value = 1.1e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGTACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1a::a:a pos.-specific C :::1::a: probability G a9:9:::: matrix T ::::a::: bits 2.1 * * 1.9 * * **** 1.7 * * **** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGTACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16415236-16415316 33 1.40e-05 TTGTCCGAGA GGAGTACA CGGCAGCGTG chrI:10474736-10474816 26 1.40e-05 TACTTCGAGA GGAGTACA CATCCGTGGG chrII:6913461-6913541 14 1.40e-05 TTGTCCGAGA GGAGTACA CGACTGATGG chrII:10538116-10538196 9 1.40e-05 ATCCGAGA GGAGTACA TGGCCGATAA chrV:5917856-5917936 19 1.40e-05 TTATCCTAGA GGAGTACA CGGTCGTGTG chrII:6061661-6061741 15 1.40e-05 TTGTCCGTGA GGAGTACA CGGCTGATGG chrII:4603188-4603268 30 1.40e-05 ACTTCCAAGA GGAGTACA CACGAGGTGG chrV:11029457-11029537 4 1.40e-05 AGA GGAGTACA CTAGTGGTGG chrII:6097610-6097690 24 1.40e-05 TTTCCCTGGA GGAGTACA CGGCCGAGCA chrIII:4912483-4912563 23 1.40e-05 TTGTCCGAGA GGAGTACA CGACATTCGG chrIII:11290709-11290789 11 1.40e-05 TTGTCCGAGA GGAGTACA CACCGGGTGG chrV:15082466-15082546 16 1.40e-05 TTGTCTAGGA GGAGTACA CGGTTGTCGG chrIII:8144733-8144813 33 1.40e-05 CTGTCCGAGA GGAGTACA CACAGCGCGG chrIV:7816566-7816646 8 1.40e-05 TCCGAGT GGAGTACA CCACCGTGTG chrIII:12673521-12673601 29 1.40e-05 TTGTCCTAGA GGAGTACA CGGCGTGGTG chrI:9393792-9393872 13 2.83e-05 TAGTCCGCGT GGACTACA CGACATGCTG chrIV:11315038-11315118 17 2.83e-05 TTGTTCACGA GGACTACA CGCAACATGG chrI:1280235-1280315 27 2.83e-05 CGGAACATCG GGACTACA AAATAACTAA chrV:10356087-10356167 10 4.44e-05 TGTCCGCGT GAAGTACA CAGACGGAAG chrII:9591235-9591315 12 4.44e-05 TTGTCCACGT GAAGTACA AAACGTGGGA chrV:10526085-10526165 7 4.44e-05 CCTGGT GAAGTACA CGGCGGATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16415236-16415316 1.4e-05 32_[+4]_40 chrI:10474736-10474816 1.4e-05 25_[+4]_47 chrII:6913461-6913541 1.4e-05 13_[+4]_59 chrII:10538116-10538196 1.4e-05 8_[+4]_64 chrV:5917856-5917936 1.4e-05 18_[+4]_54 chrII:6061661-6061741 1.4e-05 14_[+4]_58 chrII:4603188-4603268 1.4e-05 29_[+4]_43 chrV:11029457-11029537 1.4e-05 3_[+4]_69 chrII:6097610-6097690 1.4e-05 23_[+4]_49 chrIII:4912483-4912563 1.4e-05 22_[+4]_50 chrIII:11290709-11290789 1.4e-05 10_[+4]_62 chrV:15082466-15082546 1.4e-05 15_[+4]_57 chrIII:8144733-8144813 1.4e-05 32_[+4]_40 chrIV:7816566-7816646 1.4e-05 7_[+4]_65 chrIII:12673521-12673601 1.4e-05 28_[+4]_44 chrI:9393792-9393872 2.8e-05 12_[+4]_60 chrIV:11315038-11315118 2.8e-05 16_[+4]_56 chrI:1280235-1280315 2.8e-05 26_[+4]_46 chrV:10356087-10356167 4.4e-05 9_[+4]_63 chrII:9591235-9591315 4.4e-05 11_[+4]_61 chrV:10526085-10526165 4.4e-05 6_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGTACA width=8 seqs=21 chrIV:16415236-16415316 ( 33) GGAGTACA 1 chrI:10474736-10474816 ( 26) GGAGTACA 1 chrII:6913461-6913541 ( 14) GGAGTACA 1 chrII:10538116-10538196 ( 9) GGAGTACA 1 chrV:5917856-5917936 ( 19) GGAGTACA 1 chrII:6061661-6061741 ( 15) GGAGTACA 1 chrII:4603188-4603268 ( 30) GGAGTACA 1 chrV:11029457-11029537 ( 4) GGAGTACA 1 chrII:6097610-6097690 ( 24) GGAGTACA 1 chrIII:4912483-4912563 ( 23) GGAGTACA 1 chrIII:11290709-11290789 ( 11) GGAGTACA 1 chrV:15082466-15082546 ( 16) GGAGTACA 1 chrIII:8144733-8144813 ( 33) GGAGTACA 1 chrIV:7816566-7816646 ( 8) GGAGTACA 1 chrIII:12673521-12673601 ( 29) GGAGTACA 1 chrI:9393792-9393872 ( 13) GGACTACA 1 chrIV:11315038-11315118 ( 17) GGACTACA 1 chrI:1280235-1280315 ( 27) GGACTACA 1 chrV:10356087-10356167 ( 10) GAAGTACA 1 chrII:9591235-9591315 ( 12) GAAGTACA 1 chrV:10526085-10526165 ( 7) GAAGTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 1.1e-011 -1104 -1104 213 -1104 -88 -1104 190 -1104 193 -1104 -1104 -1104 -1104 -70 190 -1104 -1104 -1104 -1104 185 193 -1104 -1104 -1104 -1104 211 -1104 -1104 193 -1104 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.1e-011 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGTACA MEME-4 regular expression -------------------------------------------------------------------------------- GGAGTACA -------------------------------------------------------------------------------- Time 16.41 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAAHKS MEME-5 width = 8 sites = 80 llr = 564 E-value = 1.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAAHKS MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3aaaa2:1 pos.-specific C :::::3:3 probability G 7::::254 matrix T :::::452 bits 2.1 1.9 **** 1.7 **** 1.5 **** Relative 1.3 ***** Entropy 1.1 ***** * (10.2 bits) 0.9 ***** * 0.6 ***** * 0.4 ***** * 0.2 ***** ** 0.0 -------- Multilevel GAAAATGG consensus A CTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHKS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8319269-8319349 73 1.33e-05 CATTTTCAAA GAAAACGG chrII:7072731-7072811 16 1.33e-05 TGAGGAAACG GAAAACGG AGGAAAGAAA chrIV:9777703-9777783 1 2.92e-05 . GAAAATGG TTAGATAAAT chrIII:3499995-3500075 68 2.92e-05 GAGGATCTGC GAAAATGG GATCT chrI:3176564-3176644 63 2.92e-05 ACGGCCCCAC GAAAATGG AATCTGCGTA chrIII:5349411-5349491 67 4.54e-05 CACCGATGCG GAAAACTG GAGCGA chrIII:13474634-13474714 60 4.54e-05 ACGAAATAGT GAAAACTG TTAGAGGAAA chrI:13470393-13470473 63 7.81e-05 GGTGGCCTTG GAAAACGC GCGTGGCCGC chrV:11124085-11124165 25 7.81e-05 TATCGCCCGT GAAAACGC AAAGTGCGGC chrIV:15526655-15526735 38 7.81e-05 CGACAAAGCT GAAAACGC GCGAAATTCA chrII:476159-476239 24 7.81e-05 AAATTGCATT GAAAATTG CACAGGCGTG chrII:6741603-6741683 5 7.81e-05 CTGC GAAAATTG TTGCGAGGTC chrV:2603159-2603239 17 7.81e-05 ATTTGACCGA GAAAATTG TCCGCTTCGG chrV:2638663-2638743 54 9.42e-05 CCGCGGCCGT GAAAATGC GCGCTGCGGA chrI:8125441-8125521 37 9.42e-05 GCATCCGAGA GAAAATGC ATTCGGGGAA chrIV:16415236-16415316 56 1.11e-04 GCGTGGCCTA GAAAACTC TTGCGCGGTT chrIV:4712598-4712678 41 1.11e-04 ACCCGGCCAC GAAAACTC GGCCATTTTG chrII:10714402-10714482 23 1.11e-04 GAAGAGAGGG GAAAACTC GACCATTGTG chrV:20090824-20090904 62 1.11e-04 CCGCGGCCTA GAAAACTC CAATTCTTTT chrV:16022760-16022840 5 1.11e-04 TGGC GAAAACTC ATATTCAAAA chrV:14443784-14443864 72 1.43e-04 GCGAGTTTTA GAAAAGGG G chrIV:10085848-10085928 68 1.43e-04 GCTATAGCGG GAAAATTC AAATG chrI:4958860-4958940 15 1.43e-04 GGAGCAGAAC GAAAAGGG GATCTGCGAA chrI:12899351-12899431 16 1.43e-04 GGGGATCTGC GAAAAGGG GATCTGCAAA chrIII:10811099-10811179 19 1.43e-04 GGAGATCTGC GAAAAGGG GAGATACGAA chrIII:11848480-11848560 46 1.43e-04 CCCCACCACG GAAAAGGG ATCTGCGAGA chrIV:385230-385310 13 1.43e-04 AGGGATCTGC GAAAAGGG GAGATACTAA chrI:12899127-12899207 16 1.43e-04 GAGGCCCCAC GAAAAGGG GATCTGCAAA chrV:4181869-4181949 9 1.43e-04 GGCCCCAC GAAAAGGG GATCTGCGAG chrV:7084910-7084990 46 1.58e-04 CGGCCACAGG GAAAAAGG GCGGCAATTC chrIV:17108362-17108442 1 1.58e-04 . GAAAAAGG GGATCTATGA chrII:2752714-2752794 7 1.74e-04 TTCGTT GAAAAGTG TGCGGTGGGG chrII:14528365-14528445 30 2.22e-04 AACTCTTCGG GAAAACGT TTAATTTTAT chrII:9968446-9968526 10 2.22e-04 AATGCTTAA GAAAAATG TGTGCAGTTT chrII:10247691-10247771 25 2.22e-04 aaaaaaaaag gaaaaaTG TGACTGTTCG chrIII:3540585-3540665 40 2.22e-04 TTATAGAATC GAAAAATG GGAGAAACAG chrV:4536021-4536101 41 2.57e-04 ATGGGGCCTC GAAAAAGC TATAGCACAT chrII:15008617-15008697 47 2.57e-04 ATCTCGGCGC GAAAAAGC TGTGAATTTC chrIII:11832831-11832911 67 2.57e-04 AGTGTGATTG GAAAATGT TCGAAA chrIII:5871936-5872016 15 3.23e-04 GCACGGCCGA GAAAAGTC CAACACCTTT chrV:10736894-10736974 7 3.23e-04 GCGCGT GAAAACTT GAATTGGCCT chrIV:4702200-4702280 13 3.23e-04 TTTTCTCGAA GAAAACGA TACAACGATG chrV:1197369-1197449 16 3.23e-04 TTTTCTCGAA GAAAACGA TACAACGATG chrI:10469066-10469146 30 3.23e-04 TTTTCTCGAA GAAAACGA TACAACGATG chrIII:13439562-13439642 2 4.01e-04 G GAAAATGA CGAAAAAATA chrI:5106133-5106213 33 4.01e-04 AGGATGACTT GAAAATTT TTTCGCGCAT chrIII:5190331-5190411 40 4.01e-04 AATTTCGCGC GAAAATGA GTGTTCTGTA chrI:77888-77968 60 4.01e-04 TGAGATCTAC GAAAATGA GCGACGATGC chrII:2451170-2451250 66 4.01e-04 TTTGCGGCGC GAAAATTT CCGGCCA chrII:12042353-12042433 13 4.01e-04 AATCTAAAAT GAAAAATC AGGTTTTCAA chrIII:10857805-10857885 8 4.01e-04 TTTTGGT GAAAAATC TCAAATAATC chrII:5836540-5836620 59 4.01e-04 GCAGTTTGTA GAAAATTT GTGAATAATG chrIV:17099280-17099360 22 4.01e-04 CTCGGGGGGC AAAAATGG GCGTGGCTTC chrV:16746708-16746788 55 4.01e-04 ACTTATGAAT GAAAATTT CAAACTTTGT chrIII:11093655-11093735 18 4.01e-04 GATTCCTGGG GAAAATGA GATCTCACAG chrV:20832660-20832740 47 4.38e-04 ATATCAGCTA AAAAACTG AATTTTCTCA chrI:2100018-2100098 4 4.38e-04 GCC AAAAACTG CTGTCCCCGC chrIII:4905506-4905586 12 4.38e-04 GGTACCTATC AAAAACTG ATCGATTTGC chrV:13556817-13556897 56 4.98e-04 ACCACTCAAG AAAAACGC GGCTGTTCAA chrII:6776815-6776895 48 4.98e-04 CGGCGGCCTA GAAAATTA TGGACGCGTA chrI:4215778-4215858 54 4.98e-04 TCCCCGAGTG AAAAATTG GCGCATATTC chrII:1134701-1134781 49 5.32e-04 TTGCGTGAGA AAAAATGC GTTTTGTGCG chrV:14443585-14443665 48 5.32e-04 TTTCACGCTC AAAAATGC AGTCTCGACA chrIV:1854042-1854122 43 5.32e-04 AAAAATCTGC GAAAAGGT GATCTGGCAC chrIV:16995532-16995612 31 5.69e-04 ATTTACATTT AAAAACTC GATTCAAACT chrI:15052728-15052808 68 6.41e-04 TTCTAATTGA AAAAATTC AAAAT chrI:9393792-9393872 50 6.41e-04 CCTCTGCACA AAAAAGGG CACTAATTCA chrIII:4986932-4987012 13 6.41e-04 ATTCGTCAAA AAAAATTC AAAGAGGAGA chrV:18720068-18720148 56 6.98e-04 GCGGCTGGTG GAAAAATT CGGCTGTCGG chrIV:13289498-13289578 4 6.98e-04 ACT AAAAAAGG TGAAAATAAA chrIII:3476359-3476439 51 6.98e-04 AGCATACAAT GAAAAATT AATATAAAGC chrIII:7858679-7858759 51 8.10e-04 TTTAACATAT GAAAAATA ATTGAATTAT chrIII:11286240-11286320 3 8.50e-04 GC AAAAATGT CGAGATGGAC chrIII:8850828-8850908 61 9.09e-04 GCGGAAATTT AAAAACGA GTTCCTCTTT chrIII:9808329-9808409 9 9.09e-04 TATTTTTA AAAAACTT TATATAAATG chrIII:10856995-10857075 53 9.09e-04 TGGTGACTTC AAAAACTT CAAGTTTTCA chrIII:10064293-10064373 11 9.78e-04 AACAACGAAA AAAAAATC AAGCCTGGCC chrIV:1687346-1687426 49 9.78e-04 TAAAGCCCCC AAAAATTT ATTTGAAATT chrIII:11091823-11091903 7 1.02e-03 AATGAC AAAAATTA GGGTATTTTT chrIII:8700707-8700787 57 1.10e-03 TAACAACTGC AAAAAGTT CAATAGCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHKS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8319269-8319349 1.3e-05 72_[+5] chrII:7072731-7072811 1.3e-05 15_[+5]_57 chrIV:9777703-9777783 2.9e-05 [+5]_72 chrIII:3499995-3500075 2.9e-05 67_[+5]_5 chrI:3176564-3176644 2.9e-05 62_[+5]_10 chrIII:5349411-5349491 4.5e-05 66_[+5]_6 chrIII:13474634-13474714 4.5e-05 59_[+5]_13 chrI:13470393-13470473 7.8e-05 62_[+5]_10 chrV:11124085-11124165 7.8e-05 24_[+5]_48 chrIV:15526655-15526735 7.8e-05 37_[+5]_35 chrII:476159-476239 7.8e-05 23_[+5]_49 chrII:6741603-6741683 7.8e-05 4_[+5]_68 chrV:2603159-2603239 7.8e-05 16_[+5]_56 chrV:2638663-2638743 9.4e-05 53_[+5]_19 chrI:8125441-8125521 9.4e-05 36_[+5]_36 chrIV:16415236-16415316 0.00011 55_[+5]_17 chrIV:4712598-4712678 0.00011 40_[+5]_32 chrII:10714402-10714482 0.00011 22_[+5]_50 chrV:20090824-20090904 0.00011 61_[+5]_11 chrV:16022760-16022840 0.00011 4_[+5]_68 chrV:14443784-14443864 0.00014 71_[+5]_1 chrIV:10085848-10085928 0.00014 67_[+5]_5 chrI:4958860-4958940 0.00014 14_[+5]_58 chrI:12899351-12899431 0.00014 15_[+5]_57 chrIII:10811099-10811179 0.00014 18_[+5]_54 chrIII:11848480-11848560 0.00014 45_[+5]_27 chrIV:385230-385310 0.00014 12_[+5]_60 chrI:12899127-12899207 0.00014 15_[+5]_57 chrV:4181869-4181949 0.00014 8_[+5]_64 chrV:7084910-7084990 0.00016 45_[+5]_27 chrIV:17108362-17108442 0.00016 [+5]_72 chrII:2752714-2752794 0.00017 6_[+5]_66 chrII:14528365-14528445 0.00022 29_[+5]_43 chrII:9968446-9968526 0.00022 9_[+5]_63 chrII:10247691-10247771 0.00022 24_[+5]_48 chrIII:3540585-3540665 0.00022 39_[+5]_33 chrV:4536021-4536101 0.00026 40_[+5]_32 chrII:15008617-15008697 0.00026 46_[+5]_26 chrIII:11832831-11832911 0.00026 66_[+5]_6 chrIII:5871936-5872016 0.00032 14_[+5]_58 chrV:10736894-10736974 0.00032 6_[+5]_66 chrIV:4702200-4702280 0.00032 12_[+5]_60 chrV:1197369-1197449 0.00032 15_[+5]_57 chrI:10469066-10469146 0.00032 29_[+5]_43 chrIII:13439562-13439642 0.0004 1_[+5]_71 chrI:5106133-5106213 0.0004 32_[+5]_40 chrIII:5190331-5190411 0.0004 39_[+5]_33 chrI:77888-77968 0.0004 59_[+5]_13 chrII:2451170-2451250 0.0004 65_[+5]_7 chrII:12042353-12042433 0.0004 12_[+5]_60 chrIII:10857805-10857885 0.0004 7_[+5]_65 chrII:5836540-5836620 0.0004 58_[+5]_14 chrIV:17099280-17099360 0.0004 21_[+5]_51 chrV:16746708-16746788 0.0004 54_[+5]_18 chrIII:11093655-11093735 0.0004 17_[+5]_55 chrV:20832660-20832740 0.00044 46_[+5]_26 chrI:2100018-2100098 0.00044 3_[+5]_69 chrIII:4905506-4905586 0.00044 11_[+5]_61 chrV:13556817-13556897 0.0005 55_[+5]_17 chrII:6776815-6776895 0.0005 47_[+5]_25 chrI:4215778-4215858 0.0005 53_[+5]_19 chrII:1134701-1134781 0.00053 48_[+5]_24 chrV:14443585-14443665 0.00053 47_[+5]_25 chrIV:1854042-1854122 0.00053 42_[+5]_30 chrIV:16995532-16995612 0.00057 30_[+5]_42 chrI:15052728-15052808 0.00064 67_[+5]_5 chrI:9393792-9393872 0.00064 49_[+5]_23 chrIII:4986932-4987012 0.00064 12_[+5]_60 chrV:18720068-18720148 0.0007 55_[+5]_17 chrIV:13289498-13289578 0.0007 3_[+5]_69 chrIII:3476359-3476439 0.0007 50_[+5]_22 chrIII:7858679-7858759 0.00081 50_[+5]_22 chrIII:11286240-11286320 0.00085 2_[+5]_70 chrIII:8850828-8850908 0.00091 60_[+5]_12 chrIII:9808329-9808409 0.00091 8_[+5]_64 chrIII:10856995-10857075 0.00091 52_[+5]_20 chrIII:10064293-10064373 0.00098 10_[+5]_62 chrIV:1687346-1687426 0.00098 48_[+5]_24 chrIII:11091823-11091903 0.001 6_[+5]_66 chrIII:8700707-8700787 0.0011 56_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHKS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAAHKS width=8 seqs=80 chrIII:8319269-8319349 ( 73) GAAAACGG 1 chrII:7072731-7072811 ( 16) GAAAACGG 1 chrIV:9777703-9777783 ( 1) GAAAATGG 1 chrIII:3499995-3500075 ( 68) GAAAATGG 1 chrI:3176564-3176644 ( 63) GAAAATGG 1 chrIII:5349411-5349491 ( 67) GAAAACTG 1 chrIII:13474634-13474714 ( 60) GAAAACTG 1 chrI:13470393-13470473 ( 63) GAAAACGC 1 chrV:11124085-11124165 ( 25) GAAAACGC 1 chrIV:15526655-15526735 ( 38) GAAAACGC 1 chrII:476159-476239 ( 24) GAAAATTG 1 chrII:6741603-6741683 ( 5) GAAAATTG 1 chrV:2603159-2603239 ( 17) GAAAATTG 1 chrV:2638663-2638743 ( 54) GAAAATGC 1 chrI:8125441-8125521 ( 37) GAAAATGC 1 chrIV:16415236-16415316 ( 56) GAAAACTC 1 chrIV:4712598-4712678 ( 41) GAAAACTC 1 chrII:10714402-10714482 ( 23) GAAAACTC 1 chrV:20090824-20090904 ( 62) GAAAACTC 1 chrV:16022760-16022840 ( 5) GAAAACTC 1 chrV:14443784-14443864 ( 72) GAAAAGGG 1 chrIV:10085848-10085928 ( 68) GAAAATTC 1 chrI:4958860-4958940 ( 15) GAAAAGGG 1 chrI:12899351-12899431 ( 16) GAAAAGGG 1 chrIII:10811099-10811179 ( 19) GAAAAGGG 1 chrIII:11848480-11848560 ( 46) GAAAAGGG 1 chrIV:385230-385310 ( 13) GAAAAGGG 1 chrI:12899127-12899207 ( 16) GAAAAGGG 1 chrV:4181869-4181949 ( 9) GAAAAGGG 1 chrV:7084910-7084990 ( 46) GAAAAAGG 1 chrIV:17108362-17108442 ( 1) GAAAAAGG 1 chrII:2752714-2752794 ( 7) GAAAAGTG 1 chrII:14528365-14528445 ( 30) GAAAACGT 1 chrII:9968446-9968526 ( 10) GAAAAATG 1 chrII:10247691-10247771 ( 25) GAAAAATG 1 chrIII:3540585-3540665 ( 40) GAAAAATG 1 chrV:4536021-4536101 ( 41) GAAAAAGC 1 chrII:15008617-15008697 ( 47) GAAAAAGC 1 chrIII:11832831-11832911 ( 67) GAAAATGT 1 chrIII:5871936-5872016 ( 15) GAAAAGTC 1 chrV:10736894-10736974 ( 7) GAAAACTT 1 chrIV:4702200-4702280 ( 13) GAAAACGA 1 chrV:1197369-1197449 ( 16) GAAAACGA 1 chrI:10469066-10469146 ( 30) GAAAACGA 1 chrIII:13439562-13439642 ( 2) GAAAATGA 1 chrI:5106133-5106213 ( 33) GAAAATTT 1 chrIII:5190331-5190411 ( 40) GAAAATGA 1 chrI:77888-77968 ( 60) GAAAATGA 1 chrII:2451170-2451250 ( 66) GAAAATTT 1 chrII:12042353-12042433 ( 13) GAAAAATC 1 chrIII:10857805-10857885 ( 8) GAAAAATC 1 chrII:5836540-5836620 ( 59) GAAAATTT 1 chrIV:17099280-17099360 ( 22) AAAAATGG 1 chrV:16746708-16746788 ( 55) GAAAATTT 1 chrIII:11093655-11093735 ( 18) GAAAATGA 1 chrV:20832660-20832740 ( 47) AAAAACTG 1 chrI:2100018-2100098 ( 4) AAAAACTG 1 chrIII:4905506-4905586 ( 12) AAAAACTG 1 chrV:13556817-13556897 ( 56) AAAAACGC 1 chrII:6776815-6776895 ( 48) GAAAATTA 1 chrI:4215778-4215858 ( 54) AAAAATTG 1 chrII:1134701-1134781 ( 49) AAAAATGC 1 chrV:14443585-14443665 ( 48) AAAAATGC 1 chrIV:1854042-1854122 ( 43) GAAAAGGT 1 chrIV:16995532-16995612 ( 31) AAAAACTC 1 chrI:15052728-15052808 ( 68) AAAAATTC 1 chrI:9393792-9393872 ( 50) AAAAAGGG 1 chrIII:4986932-4987012 ( 13) AAAAATTC 1 chrV:18720068-18720148 ( 56) GAAAAATT 1 chrIV:13289498-13289578 ( 4) AAAAAAGG 1 chrIII:3476359-3476439 ( 51) GAAAAATT 1 chrIII:7858679-7858759 ( 51) GAAAAATA 1 chrIII:11286240-11286320 ( 3) AAAAATGT 1 chrIII:8850828-8850908 ( 61) AAAAACGA 1 chrIII:9808329-9808409 ( 9) AAAAACTT 1 chrIII:10856995-10857075 ( 53) AAAAACTT 1 chrIII:10064293-10064373 ( 11) AAAAAATC 1 chrIV:1687346-1687426 ( 49) AAAAATTT 1 chrIII:11091823-11091903 ( 7) AAAAATTA 1 chrIII:8700707-8700787 ( 57) AAAAAGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHKS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.66841 E= 1.4e-010 0 -1297 169 -1297 193 -1297 -1297 -1297 193 -1297 -1297 -1297 193 -1297 -1297 -1297 193 -1297 -1297 -1297 -59 43 -50 34 -1297 -1297 113 85 -93 31 76 -56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHKS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 1.4e-010 0.262500 0.000000 0.737500 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.175000 0.312500 0.162500 0.350000 0.000000 0.000000 0.500000 0.500000 0.137500 0.287500 0.387500 0.187500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAHKS MEME-5 regular expression -------------------------------------------------------------------------------- [GA]AAAA[TC][GT][GC] -------------------------------------------------------------------------------- Time 19.77 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13474634-13474714 9.42e-02 59_[+5(4.54e-05)]_13 chrIII:11832831-11832911 1.57e-01 80 chrIII:11093655-11093735 1.03e-01 80 chrV:4181869-4181949 3.60e-01 80 chrIV:17108362-17108442 2.26e-01 80 chrV:16553073-16553153 8.78e-01 80 chrIV:1687346-1687426 7.54e-01 80 chrI:5118930-5119010 1.32e-04 [+2(1.30e-05)]_31_[+1(6.13e-05)]_33 chrI:2710645-2710725 5.29e-02 63_[+3(4.89e-05)]_9 chrI:13422611-13422691 3.30e-02 56_[+3(1.62e-05)]_16 chrI:2144162-2144242 1.00e+00 80 chrII:15008617-15008697 1.29e-01 80 chrV:16746708-16746788 4.06e-01 80 chrI:12899127-12899207 3.38e-01 80 chrI:636773-636853 8.18e-04 31_[+2(1.30e-05)]_41 chrIII:12673521-12673601 7.47e-06 28_[+4(1.40e-05)]_8_[+2(2.38e-05)]_\ 7_[+1(2.07e-05)]_13 chrV:156214-156294 1.33e-03 34_[+1(6.13e-05)]_11_[+3(1.62e-05)]_\ 19 chrV:16022760-16022840 7.60e-04 80 chrI:13418711-13418791 8.97e-01 80 chrI:1280235-1280315 3.83e-02 26_[+4(2.83e-05)]_46 chrII:8137511-8137591 1.47e-01 80 chrI:14756452-14756532 1.21e-01 80 chrIII:5803114-5803194 2.11e-03 13_[+2(1.30e-05)]_6_[+2(7.08e-05)]_\ 45 chrIV:13487157-13487237 9.09e-01 80 chrI:2487855-2487935 6.42e-01 80 chrIII:4986932-4987012 1.55e-02 80 chrIV:7816566-7816646 6.34e-05 7_[+4(1.40e-05)]_8_[+2(1.30e-05)]_\ 49 chrI:1676023-1676103 1.96e-01 80 chrI:1213227-1213307 5.32e-01 80 chrIII:4905506-4905586 4.21e-01 80 chrI:5281830-5281910 3.12e-02 10_[+1(2.07e-05)]_62 chrI:6760298-6760378 6.04e-05 4_[+2(4.95e-05)]_8_[+2(2.38e-05)]_\ 11_[+3(1.62e-05)]_33 chrI:4215778-4215858 5.84e-02 80 chrIII:10064293-10064373 1.14e-05 23_[+2(2.38e-05)]_7_[+2(1.30e-05)]_\ 34 chrI:5659146-5659226 2.78e-02 26_[+1(6.13e-05)]_46 chrIII:4343284-4343364 1.05e-04 16_[+4(1.40e-05)]_7_[+2(4.95e-05)]_\ 41 chrIV:17099280-17099360 2.31e-01 80 chrV:20424945-20425025 1.41e-04 28_[+2(1.30e-05)]_31_[+1(2.07e-05)]_\ 5 chrIII:10856995-10857075 5.91e-01 80 chrII:8927385-8927465 1.34e-02 26_[+2(2.38e-05)]_46 chrIII:8144733-8144813 2.87e-04 32_[+4(1.40e-05)]_40 chrI:2204814-2204894 5.54e-01 80 chrIV:11315038-11315118 1.25e-04 16_[+4(2.83e-05)]_7_[+2(4.95e-05)]_\ 41 chrII:2991865-2991945 9.80e-01 80 chrX:2108389-2108469 1.24e-02 24_[+1(6.13e-05)]_48 chrIII:13187898-13187978 4.41e-01 80 chrIV:4042389-4042469 9.52e-04 61_[+2(4.95e-05)]_11 chrI:7251601-7251681 9.94e-01 80 chrIV:6747852-6747932 1.57e-01 80 chrIV:385230-385310 8.66e-02 80 chrI:10469066-10469146 1.75e-01 80 chrIII:11848480-11848560 2.31e-01 80 chrI:2871475-2871555 3.68e-01 80 chrIII:10811099-10811179 3.96e-01 80 chrIII:1540280-1540360 3.86e-03 9_[+2(4.95e-05)]_63 chrII:15089579-15089659 1.61e-02 29_[+1(6.13e-05)]_[+1(3.78e-05)]_35 chrIV:8334105-8334185 6.08e-01 80 chrI:10161988-10162068 2.78e-04 56_[+3(2.96e-05)]_16 chrX:3379241-3379321 3.34e-04 52_[+2(2.38e-05)]_20 chrI:11222157-11222237 8.66e-02 35_[+1(3.78e-05)]_37 chrIII:7199011-7199091 6.77e-05 5_[+2(1.30e-05)]_14_[+1(3.78e-05)]_\ 45 chrV:6107612-6107692 1.55e-03 37_[+2(4.95e-05)]_12_[+2(1.30e-05)]_\ 15 chrII:5836540-5836620 6.48e-01 80 chrX:7798503-7798583 1.41e-02 80 chrI:13421176-13421256 7.20e-01 80 chrV:14423384-14423464 6.28e-01 80 chrV:2603159-2603239 1.24e-03 16_[+5(7.81e-05)]_56 chrIII:3476359-3476439 3.30e-01 80 chrI:12899351-12899431 4.01e-01 80 chrI:3176564-3176644 9.93e-03 21_[+5(7.81e-05)]_33_[+5(2.92e-05)]_\ 10 chrII:3482384-3482464 4.63e-01 80 chrIII:9808329-9808409 5.97e-01 80 chrIII:2697379-2697459 2.50e-01 80 chrV:20090824-20090904 1.94e-04 54_[+2(4.95e-05)]_18 chrIII:11286240-11286320 5.62e-04 15_[+2(7.08e-05)]_12_[+1(3.78e-05)]_\ 37 chrI:8511428-8511508 7.08e-02 28_[+1(6.13e-05)]_44 chrIV:16415775-16415855 3.12e-03 7_[+2(7.08e-05)]_[+2(1.30e-05)]_57 chrIII:3499995-3500075 9.61e-02 67_[+5(2.92e-05)]_5 chrI:1034350-1034430 2.37e-01 40_[+1(6.13e-05)]_32 chrIII:10857805-10857885 4.19e-01 80 chrIII:3322472-3322552 1.25e-01 80 chrIV:16995532-16995612 2.85e-02 80 chrV:10441284-10441364 1.70e-04 2_[+2(4.95e-05)]_70 chrIII:11091823-11091903 4.29e-01 80 chrV:11933382-11933462 6.40e-01 80 chrII:10200924-10201004 4.77e-03 24_[+2(1.30e-05)]_48 chrIII:10811302-10811382 6.62e-01 80 chrV:15082466-15082546 1.89e-03 15_[+4(1.40e-05)]_13_[+1(6.13e-05)]_\ 36 chrII:15008823-15008903 6.25e-01 80 chrV:7084910-7084990 3.99e-05 3_[+2(1.30e-05)]_8_[+1(2.07e-05)]_\ 53 chrI:4958860-4958940 2.53e-01 80 chrIII:11290709-11290789 5.00e-05 10_[+4(1.40e-05)]_7_[+2(2.38e-05)]_\ 47 chrI:15014003-15014083 5.97e-03 2_[+1(2.07e-05)]_21_[+1(6.13e-05)]_\ 41 chrII:2752714-2752794 1.44e-04 36_[+2(1.30e-05)]_10_[+1(6.13e-05)]_\ 18 chrI:9393792-9393872 1.50e-05 12_[+4(2.83e-05)]_8_[+2(1.30e-05)]_\ 44 chrV:18981147-18981227 2.46e-05 40_[+1(6.13e-05)]_10_[+3(1.62e-05)]_\ 14 chrIII:8700707-8700787 1.32e-01 80 chrIII:4912483-4912563 2.31e-06 22_[+4(1.40e-05)]_13_[+1(2.07e-05)]_\ [+2(1.30e-05)]_21 chrII:6383324-6383404 9.39e-03 13_[+2(1.30e-05)]_59 chrII:6776815-6776895 2.44e-05 40_[+2(4.95e-05)]_16_[+3(1.62e-05)]_\ 8 chrIV:12653241-12653321 1.09e-02 46_[+2(2.38e-05)]_26 chrII:4791432-4791512 3.08e-05 23_[+2(8.58e-05)]_7_[+1(2.07e-05)]_\ 10_[+3(1.62e-05)]_16 chrIV:3803400-3803480 4.28e-01 80 chrI:8125441-8125521 1.62e-01 36_[+5(9.42e-05)]_36 chrIV:1854042-1854122 2.49e-01 80 chrIV:8973676-8973756 2.22e-02 63_[+1(3.78e-05)]_9 chrV:6830247-6830327 4.95e-01 80 chrI:4247548-4247628 9.95e-05 48_[+1(6.13e-05)]_[+1(3.78e-05)]_3_\ [+3(2.96e-05)]_5 chrIII:8850828-8850908 4.00e-03 27_[+1(6.13e-05)]_45 chrII:6097610-6097690 2.18e-07 23_[+4(1.40e-05)]_[+2(7.08e-05)]_24_\ [+1(2.07e-05)]_9 chrIII:7858679-7858759 3.59e-02 7_[+4(6.07e-05)]_65 chrII:484495-484575 2.72e-02 80 chrIV:16954588-16954668 9.99e-01 80 chrV:3218764-3218844 4.07e-01 80 chrV:11029457-11029537 3.13e-04 3_[+4(1.40e-05)]_69 chrIV:6631998-6632078 3.53e-03 80 chrII:14857088-14857168 4.02e-04 5_[+2(2.38e-05)]_14_[+2(4.95e-05)]_\ 13_[+1(2.07e-05)]_24 chrIII:4862059-4862139 1.02e-01 9_[+1(6.13e-05)]_63 chrV:10320319-10320399 2.26e-04 28_[+1(6.13e-05)]_14_[+1(2.07e-05)]_\ 3_[+3(1.62e-05)]_11 chrV:2127167-2127247 2.46e-04 29_[+2(1.30e-05)]_43 chrIII:3540585-3540665 4.82e-01 80 chrIII:8529049-8529129 1.39e-04 42_[+2(1.30e-05)]_12_[+1(2.07e-05)]_\ 10 chrIII:10123776-10123856 4.49e-01 80 chrII:6734815-6734895 7.54e-01 80 chrX:9917544-9917624 1.41e-01 12_[+1(6.13e-05)]_60 chrIII:5068951-5069031 3.26e-04 68_[+3(1.62e-05)]_4 chrIII:4196736-4196816 4.97e-04 17_[+2(1.30e-05)]_18_[+3(4.89e-05)]_\ 29 chrII:2992731-2992811 7.21e-01 80 chrX:1853697-1853777 3.64e-02 43_[+2(8.58e-05)]_29 chrII:6741603-6741683 4.90e-02 4_[+5(7.81e-05)]_68 chrII:13117285-13117365 6.69e-04 29_[+1(6.13e-05)]_10_[+3(1.62e-05)]_\ 25 chrV:14443585-14443665 4.70e-01 80 chrII:10247691-10247771 1.08e-01 80 chrII:12042353-12042433 4.07e-01 80 chrII:4603188-4603268 5.09e-06 29_[+4(1.40e-05)]_7_[+2(7.08e-05)]_\ 8_[+1(3.78e-05)]_12 chrIII:9465593-9465673 9.05e-06 39_[+2(1.30e-05)]_20_[+1(6.13e-05)]_\ 5 chrI:5164984-5165064 3.62e-03 30_[+2(1.30e-05)]_14_[+2(8.58e-05)]_\ 20 chrV:10526085-10526165 1.30e-04 6_[+4(4.44e-05)]_66 chrV:13409218-13409298 5.24e-05 31_[+4(1.40e-05)]_[+2(7.08e-05)]_33 chrIII:4930432-4930512 8.95e-04 2_[+2(1.30e-05)]_33_[+1(3.78e-05)]_\ 29 chrIII:5308390-5308470 1.49e-03 34_[+2(1.30e-05)]_23_[+2(2.38e-05)]_\ 7 chrII:7072731-7072811 3.92e-02 15_[+5(1.33e-05)]_57 chrII:6061661-6061741 4.76e-03 14_[+4(1.40e-05)]_58 chrI:13422816-13422896 4.48e-01 80 chrV:5917856-5917936 6.85e-04 18_[+4(1.40e-05)]_8_[+2(7.08e-05)]_\ 38 chrV:11644302-11644382 1.38e-02 40_[+2(1.30e-05)]_32 chrIV:10085848-10085928 1.72e-02 80 chrI:10469265-10469345 5.18e-01 80 chrII:5511906-5511986 1.81e-01 5_[+1(6.13e-05)]_6_[+1(6.13e-05)]_\ 53 chrIV:9777703-9777783 4.71e-03 [+5(2.92e-05)]_18_[+1(6.13e-05)]_46 chrII:9591235-9591315 5.04e-05 11_[+4(4.44e-05)]_41_[+3(1.62e-05)]_\ 12 chrII:1134701-1134781 5.57e-01 80 chrII:10538116-10538196 1.95e-07 8_[+4(1.40e-05)]_16_[+1(2.07e-05)]_\ 3_[+3(1.62e-05)]_29 chrII:10714402-10714482 1.18e-01 80 chrX:16376132-16376212 1.35e-04 38_[+2(1.30e-05)]_34 chrV:10178343-10178423 9.39e-01 80 chrI:10026032-10026112 6.08e-01 80 chrIV:13289498-13289578 4.78e-04 34_[+2(1.30e-05)]_38 chrII:2451170-2451250 2.82e-03 45_[+2(7.08e-05)]_27 chrIV:11020124-11020204 9.03e-01 80 chrIV:7486344-7486424 9.97e-01 80 chrII:6913461-6913541 3.76e-05 13_[+4(1.40e-05)]_22_[+1(6.13e-05)]_\ 29 chrIII:11746879-11746959 1.01e-04 66_[+3(1.62e-05)]_6 chrIII:7088070-7088150 3.21e-04 41_[+1(2.07e-05)]_10_[+3(1.62e-05)]_\ 13 chrII:14144177-14144257 8.13e-01 80 chrI:77888-77968 2.88e-01 80 chrI:4967578-4967658 6.95e-01 80 chrIII:9868282-9868362 5.19e-03 48_[+1(3.78e-05)]_24 chrI:853258-853338 8.05e-01 80 chrIV:11635799-11635879 9.92e-01 80 chrII:10547435-10547515 7.77e-01 80 chrII:476159-476239 1.69e-02 23_[+5(7.81e-05)]_49 chrV:1197369-1197449 1.99e-01 80 chrI:1415972-1416052 9.65e-01 80 chrIII:5190331-5190411 5.42e-06 60_[+1(2.07e-05)]_3_[+3(1.62e-05)]_\ 1 chrIII:5349411-5349491 5.37e-05 50_[+1(6.13e-05)]_8_[+5(4.54e-05)]_\ 6 chrI:15052728-15052808 4.89e-01 80 chrV:16401682-16401762 3.05e-05 31_[+1(3.78e-05)]_18_[+3(1.62e-05)]_\ 15 chrII:15232858-15232938 3.09e-05 38_[+2(4.95e-05)]_34 chrII:8516929-8517009 1.85e-03 71_[+1(2.07e-05)]_1 chrV:10356087-10356167 1.36e-03 9_[+4(4.44e-05)]_33_[+1(6.13e-05)]_\ 22 chrIV:4171907-4171987 5.83e-04 29_[+2(4.95e-05)]_43 chrIV:15526655-15526735 3.04e-06 7_[+4(2.83e-05)]_[+2(7.08e-05)]_14_\ [+5(7.81e-05)]_35 chrII:9968446-9968526 1.18e-02 80 chrI:5106133-5106213 1.28e-01 80 chrIV:4702200-4702280 1.99e-01 80 chrV:11124085-11124165 6.01e-04 24_[+5(7.81e-05)]_27_[+1(2.07e-05)]_\ 13 chrV:18720068-18720148 3.47e-01 80 chrI:2100018-2100098 2.06e-01 80 chrIII:12273763-12273843 2.84e-02 42_[+1(6.13e-05)]_30 chrII:14528365-14528445 1.32e-01 80 chrV:14443784-14443864 2.60e-01 80 chrX:10852203-10852283 7.90e-01 80 chrV:20839594-20839674 4.98e-01 80 chrIV:4712598-4712678 2.65e-04 23_[+1(2.07e-05)]_14_[+1(2.07e-05)]_\ 27 chrI:4936329-4936409 6.77e-01 80 chrIV:2033155-2033235 7.33e-01 80 chrV:2638663-2638743 6.57e-06 44_[+1(3.78e-05)]_1_[+5(9.42e-05)]_\ 9_[+3(1.62e-05)]_2 chrII:9931216-9931296 3.02e-03 7_[+3(6.60e-05)]_65 chrI:13470393-13470473 2.77e-05 39_[+4(2.83e-05)]_15_[+5(7.81e-05)]_\ 10 chrI:6407331-6407411 4.07e-01 80 chrI:3350032-3350112 6.56e-01 80 chrV:20832660-20832740 6.11e-01 80 chrII:10395590-10395670 7.53e-01 80 chrIV:410777-410857 3.13e-01 80 chrIII:640549-640629 7.36e-01 80 chrV:10736894-10736974 4.02e-07 18_[+2(1.30e-05)]_36_[+3(1.62e-05)]_\ 10 chrV:9981047-9981127 7.84e-01 80 chrI:6446643-6446723 9.65e-01 80 chrV:1197575-1197655 9.10e-01 80 chrI:10642445-10642525 2.80e-01 80 chrIII:931568-931648 8.19e-01 80 chrIII:5603755-5603835 2.53e-03 33_[+2(2.38e-05)]_20_[+1(6.13e-05)]_\ 11 chrII:4740129-4740209 1.08e-02 54_[+1(6.13e-05)]_18 chrII:9308899-9308979 6.62e-01 80 chrV:4536021-4536101 1.16e-01 80 chrV:9536703-9536783 4.20e-04 15_[+2(1.30e-05)]_57 chrI:1416193-1416273 4.73e-01 80 chrII:3502784-3502864 2.33e-04 39_[+1(6.13e-05)]_33 chrI:9855460-9855540 6.95e-02 62_[+3(4.89e-05)]_10 chrV:13715446-13715526 9.04e-01 80 chrIII:558956-559036 2.06e-01 80 chrIII:5108965-5109045 3.47e-04 25_[+2(2.38e-05)]_26_[+1(2.07e-05)]_\ 13 chrV:7465694-7465774 1.34e-03 32_[+2(1.30e-05)]_40 chrI:10474736-10474816 1.45e-03 25_[+4(1.40e-05)]_36_[+1(6.13e-05)]_\ 3 chrIV:16415236-16415316 2.19e-06 32_[+4(1.40e-05)]_8_[+2(1.30e-05)]_\ 24 chrII:7857723-7857803 9.99e-01 80 chrII:10872694-10872774 5.65e-02 30_[+1(6.13e-05)]_42 chrI:27075-27155 2.00e-01 80 chrV:11933581-11933661 6.36e-01 80 chrII:11537562-11537642 6.94e-01 80 chrI:1823200-1823280 5.92e-01 80 chrI:11202404-11202484 8.19e-01 80 chrIII:5871936-5872016 3.20e-04 7_[+2(7.08e-05)]_65 chrIII:10432299-10432379 1.83e-01 80 chrIV:410577-410657 1.93e-01 80 chrII:8039577-8039657 1.96e-01 80 chrIV:6206545-6206625 7.73e-02 29_[+1(6.13e-05)]_11_[+1(2.07e-05)]_\ 24 chrIV:13783699-13783779 1.78e-04 35_[+1(2.07e-05)]_37 chrII:66434-66514 1.87e-01 80 chrIII:13439562-13439642 1.89e-03 23_[+2(1.30e-05)]_49 chrV:13556817-13556897 2.62e-04 38_[+1(6.13e-05)]_34 chrI:7772609-7772689 8.51e-01 80 chrI:6252942-6253022 9.08e-01 80 chrIII:8319269-8319349 9.91e-04 27_[+5(9.42e-05)]_21_[+1(6.13e-05)]_\ 8_[+5(1.33e-05)] chrII:11567383-11567463 4.01e-01 80 chrIV:9074375-9074455 9.46e-02 80 chrX:15849535-15849615 9.91e-01 80 chrIII:10460717-10460797 9.11e-01 80 chrV:13313209-13313289 1.53e-03 39_[+1(6.13e-05)]_10_[+3(2.96e-05)]_\ 15 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************