******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/tbx-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:5129314-5129394 1.0000 80 chrIII:5142112-5142192 1.0000 80 chrIII:5120780-5120860 1.0000 80 chrIII:5125924-5126004 1.0000 80 chrIII:5136357-5136437 1.0000 80 chrIII:5140635-5140715 1.0000 80 chrIII:5144349-5144429 1.0000 80 chrIII:5138693-5138773 1.0000 80 chrIV:5811216-5811296 1.0000 80 chrX:3834122-3834202 1.0000 80 chrIV:5848133-5848213 1.0000 80 chrIII:5129528-5129608 1.0000 80 chrV:8805240-8805320 1.0000 80 chrX:9147098-9147178 1.0000 80 chrIII:5134641-5134721 1.0000 80 chrII:9481599-9481679 1.0000 80 chrII:7815556-7815636 1.0000 80 chrI:7747652-7747732 1.0000 80 chrV:11428825-11428905 1.0000 80 chrI:14809361-14809441 1.0000 80 chrIII:5133383-5133463 1.0000 80 chrV:11801586-11801666 1.0000 80 chrII:12622334-12622414 1.0000 80 chrIII:5140836-5140916 1.0000 80 chrI:4433228-4433308 1.0000 80 chrX:16991598-16991678 1.0000 80 chrIV:6500939-6501019 1.0000 80 chrX:6844530-6844610 1.0000 80 chrIV:13695872-13695952 1.0000 80 chrI:429266-429346 1.0000 80 chrIV:309676-309756 1.0000 80 chrIII:10632231-10632311 1.0000 80 chrIII:7534815-7534895 1.0000 80 chrX:4802450-4802530 1.0000 80 chrI:5400317-5400397 1.0000 80 chrIV:13911090-13911170 1.0000 80 chrX:8394431-8394511 1.0000 80 chrII:11642225-11642305 1.0000 80 chrV:10726831-10726911 1.0000 80 chrII:11353646-11353726 1.0000 80 chrII:12625840-12625920 1.0000 80 chrIV:12200961-12201041 1.0000 80 chrX:15073051-15073131 1.0000 80 chrV:5088463-5088543 1.0000 80 chrIV:13682910-13682990 1.0000 80 chrV:6505566-6505646 1.0000 80 chrII:6845224-6845304 1.0000 80 chrV:13536350-13536430 1.0000 80 chrX:9330873-9330953 1.0000 80 chrX:7040915-7040995 1.0000 80 chrII:7628796-7628876 1.0000 80 chrIV:13704200-13704280 1.0000 80 chrII:5291213-5291293 1.0000 80 chrIV:2052515-2052595 1.0000 80 chrX:16116379-16116459 1.0000 80 chrX:8926520-8926600 1.0000 80 chrX:6856970-6857050 1.0000 80 chrX:16352662-16352742 1.0000 80 chrI:10033072-10033152 1.0000 80 chrX:6796333-6796413 1.0000 80 chrX:17421706-17421786 1.0000 80 chrX:1265511-1265591 1.0000 80 chrV:11529723-11529803 1.0000 80 chrV:12557153-12557233 1.0000 80 chrIV:8453949-8454029 1.0000 80 chrII:4981815-4981895 1.0000 80 chrIV:5753443-5753523 1.0000 80 chrII:7343079-7343159 1.0000 80 chrI:7027801-7027881 1.0000 80 chrI:7036865-7036945 1.0000 80 chrV:4357498-4357578 1.0000 80 chrV:12554342-12554422 1.0000 80 chrX:3111115-3111195 1.0000 80 chrV:4908705-4908785 1.0000 80 chrX:1536289-1536369 1.0000 80 chrIII:5121776-5121856 1.0000 80 chrV:6998501-6998581 1.0000 80 chrII:14036871-14036951 1.0000 80 chrX:13034508-13034588 1.0000 80 chrI:7749504-7749584 1.0000 80 chrIV:7470165-7470245 1.0000 80 chrV:10727827-10727907 1.0000 80 chrI:7114863-7114943 1.0000 80 chrIII:8520717-8520797 1.0000 80 chrIV:326714-326794 1.0000 80 chrII:14928948-14929028 1.0000 80 chrX:17003779-17003859 1.0000 80 chrX:16481207-16481287 1.0000 80 chrI:2020085-2020165 1.0000 80 chrI:7759222-7759302 1.0000 80 chrI:9428278-9428358 1.0000 80 chrIV:5822201-5822281 1.0000 80 chrI:6883521-6883601 1.0000 80 chrX:14780296-14780376 1.0000 80 chrX:7990513-7990593 1.0000 80 chrIV:1056620-1056700 1.0000 80 chrX:8476436-8476516 1.0000 80 chrX:13539902-13539982 1.0000 80 chrIII:5843805-5843885 1.0000 80 chrX:6741135-6741215 1.0000 80 chrIV:8463219-8463299 1.0000 80 chrIII:6009121-6009201 1.0000 80 chrII:9344109-9344189 1.0000 80 chrX:4957453-4957533 1.0000 80 chrX:13350994-13351074 1.0000 80 chrX:12180827-12180907 1.0000 80 chrX:2893106-2893186 1.0000 80 chrIII:9119082-9119162 1.0000 80 chrIII:5814911-5814991 1.0000 80 chrV:6031741-6031821 1.0000 80 chrI:9083085-9083165 1.0000 80 chrIII:7897905-7897985 1.0000 80 chrV:20761939-20762019 1.0000 80 chrIII:4502085-4502165 1.0000 80 chrI:7332028-7332108 1.0000 80 chrX:10767316-10767396 1.0000 80 chrV:9958784-9958864 1.0000 80 chrX:6664115-6664195 1.0000 80 chrX:12689959-12690039 1.0000 80 chrII:11286698-11286778 1.0000 80 chrX:617845-617925 1.0000 80 chrX:7242220-7242300 1.0000 80 chrX:6204993-6205073 1.0000 80 chrIII:96310-96390 1.0000 80 chrV:6683404-6683484 1.0000 80 chrX:12425602-12425682 1.0000 80 chrIII:2151624-2151704 1.0000 80 chrII:15205476-15205556 1.0000 80 chrII:13678768-13678848 1.0000 80 chrX:14894522-14894602 1.0000 80 chrII:13083886-13083966 1.0000 80 chrX:8390135-8390215 1.0000 80 chrI:7709217-7709297 1.0000 80 chrIV:3519561-3519641 1.0000 80 chrV:14095119-14095199 1.0000 80 chrIV:5778458-5778538 1.0000 80 chrX:13541492-13541572 1.0000 80 chrX:11482790-11482870 1.0000 80 chrIV:11284161-11284241 1.0000 80 chrX:15155174-15155254 1.0000 80 chrII:1402313-1402393 1.0000 80 chrX:14737142-14737222 1.0000 80 chrX:8238685-8238765 1.0000 80 chrIV:5939294-5939374 1.0000 80 chrIV:7824752-7824832 1.0000 80 chrV:10271146-10271226 1.0000 80 chrII:386103-386183 1.0000 80 chrIV:4676137-4676217 1.0000 80 chrIV:9869625-9869705 1.0000 80 chrIII:12306118-12306198 1.0000 80 chrX:637815-637895 1.0000 80 chrX:7590879-7590959 1.0000 80 chrX:864372-864452 1.0000 80 chrIII:8283674-8283754 1.0000 80 chrV:9408974-9409054 1.0000 80 chrIII:8780640-8780720 1.0000 80 chrV:8543553-8543633 1.0000 80 chrI:6259238-6259318 1.0000 80 chrX:4982200-4982280 1.0000 80 chrII:7836780-7836860 1.0000 80 chrV:5294719-5294799 1.0000 80 chrX:4132430-4132510 1.0000 80 chrI:5378612-5378692 1.0000 80 chrV:5228601-5228681 1.0000 80 chrV:10661655-10661735 1.0000 80 chrX:12899315-12899395 1.0000 80 chrIII:7530846-7530926 1.0000 80 chrV:11796522-11796602 1.0000 80 chrX:11315388-11315468 1.0000 80 chrV:11885252-11885332 1.0000 80 chrII:8813821-8813901 1.0000 80 chrV:381344-381424 1.0000 80 chrI:10157469-10157549 1.0000 80 chrX:15081590-15081670 1.0000 80 chrX:5896098-5896178 1.0000 80 chrV:13200748-13200828 1.0000 80 chrV:6238463-6238543 1.0000 80 chrIV:7612703-7612783 1.0000 80 chrV:2134443-2134523 1.0000 80 chrV:1935743-1935823 1.0000 80 chrV:10672749-10672829 1.0000 80 chrV:12635397-12635477 1.0000 80 chrX:6259253-6259333 1.0000 80 chrII:2454929-2455009 1.0000 80 chrIII:4505864-4505944 1.0000 80 chrX:10772897-10772977 1.0000 80 chrII:4090933-4091013 1.0000 80 chrV:7089389-7089469 1.0000 80 chrV:12300928-12301008 1.0000 80 chrX:3826281-3826361 1.0000 80 chrII:2748421-2748501 1.0000 80 chrIV:2349087-2349167 1.0000 80 chrI:12164793-12164873 1.0000 80 chrX:5212837-5212917 1.0000 80 chrII:6891989-6892069 1.0000 80 chrIII:13152821-13152901 1.0000 80 chrIV:740861-740941 1.0000 80 chrX:14288029-14288109 1.0000 80 chrI:5599538-5599618 1.0000 80 chrX:17519662-17519742 1.0000 80 chrIV:9868147-9868227 1.0000 80 chrIII:6145465-6145545 1.0000 80 chrII:12679785-12679865 1.0000 80 chrV:6994161-6994241 1.0000 80 chrIII:12673525-12673605 1.0000 80 chrV:11802568-11802648 1.0000 80 chrV:13202319-13202399 1.0000 80 chrX:3492628-3492708 1.0000 80 chrV:10724668-10724748 1.0000 80 chrX:5210654-5210734 1.0000 80 chrV:14851359-14851439 1.0000 80 chrII:15212603-15212683 1.0000 80 chrV:10867773-10867853 1.0000 80 chrIV:3653522-3653602 1.0000 80 chrX:7194003-7194083 1.0000 80 chrX:15335027-15335107 1.0000 80 chrV:11889728-11889808 1.0000 80 chrIV:10782151-10782231 1.0000 80 chrX:13739409-13739489 1.0000 80 chrIII:7305136-7305216 1.0000 80 chrI:9150337-9150417 1.0000 80 chrII:12050713-12050793 1.0000 80 chrIV:13696075-13696155 1.0000 80 chrV:11733633-11733713 1.0000 80 chrIII:6402493-6402573 1.0000 80 chrIII:10155143-10155223 1.0000 80 chrII:4745403-4745483 1.0000 80 chrII:11737523-11737603 1.0000 80 chrIII:6352603-6352683 1.0000 80 chrX:13337150-13337230 1.0000 80 chrII:12264145-12264225 1.0000 80 chrIV:8028462-8028542 1.0000 80 chrV:20704176-20704256 1.0000 80 chrII:13609790-13609870 1.0000 80 chrIV:3858157-3858237 1.0000 80 chrV:9516413-9516493 1.0000 80 chrII:3929599-3929679 1.0000 80 chrIV:5764532-5764612 1.0000 80 chrI:14710987-14711067 1.0000 80 chrIV:15017083-15017163 1.0000 80 chrIII:4986959-4987039 1.0000 80 chrIV:11020113-11020193 1.0000 80 chrII:9669124-9669204 1.0000 80 chrI:6882128-6882208 1.0000 80 chrIV:12209140-12209220 1.0000 80 chrI:6556272-6556352 1.0000 80 chrV:4693312-4693392 1.0000 80 chrIV:3654323-3654403 1.0000 80 chrII:6321170-6321250 1.0000 80 chrI:9149339-9149419 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_tbx-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/tbx-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.215 G 0.206 T 0.295 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.215 G 0.206 T 0.295 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGARAAA MEME-1 width = 8 sites = 50 llr = 391 E-value = 1.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a3a5877 pos.-specific C :::::2:: probability G 9:7:5:33 matrix T :::::::: bits 2.3 2.1 1.8 ** * 1.6 ** * Relative 1.4 **** Entropy 1.1 ******** (11.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAAAA consensus A GCGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4986959-4987039 42 1.62e-05 CCTCGTCCGC GAGAGAAA AAAGCGCGGA chrII:3929599-3929679 65 1.62e-05 GAATTAGAGA GAGAGAAA AAGGGAGT chrI:12164793-12164873 28 1.62e-05 AAGAAACACA GAGAGAAA ATTGGAGAAA chrV:5294719-5294799 17 1.62e-05 TTGAAAAAGA GAGAGAAA CATAGAGATT chrIII:5134641-5134721 10 1.62e-05 GAAAAAAGC GAGAGAAA AAAGTGGCGA chrX:14288029-14288109 40 3.84e-05 AAGGATAGAC GAGAAAAA CCGCACTCAT chrX:10767316-10767396 52 3.84e-05 CCCAAACAAT GAGAAAAA AGAAACTAAA chrI:2020085-2020165 5 3.84e-05 CCTA GAGAAAAA GTGTGTGAAT chrV:10727827-10727907 52 3.84e-05 TACATGCCTA GAGAAAAA GAAGAAAGAG chrI:7749504-7749584 65 3.84e-05 TTTTTCCCTT GAGAAAAA ACCGCTGC chrI:7747652-7747732 5 3.84e-05 CATT GAGAAAAA AAAACAATCT chrIII:5142112-5142192 62 3.84e-05 CGACCAAAAT GAGAAAAA TGGCGGAGAA chrI:5599538-5599618 30 5.01e-05 GTGAAAGTGA GAGAGAGA CACAGTGAAC chrX:12425602-12425682 46 5.01e-05 AAGAAAAAGA GAGAGAGA GGGAGGAAGA chrIII:96310-96390 8 5.01e-05 gacgggg gagagaga gtgtgaaatg chrIV:6500939-6501019 57 5.01e-05 ACGAGAAAGA GAGAGAGA CGTACTCTCT chrIV:3654323-3654403 38 6.18e-05 TGGAAAATTC GAGAGAAG CCCCCCGTTT chrV:14851359-14851439 34 6.18e-05 AGCAAGAATA GAGAGAAG AGAGTGCAGA chrV:13202319-13202399 72 6.18e-05 TACAAAAAAA GAGAGAAG T chrIV:13682910-13682990 57 6.18e-05 ATCTCTCACC GAGAGAAG ATATTATTTG chrV:11885252-11885332 22 7.80e-05 AAATTGTGAA GAGAAAGA AAGAAAACGA chrX:14894522-14894602 29 7.80e-05 GTATAGAATC GAGAAAGA GATATTGCAA chrII:5291213-5291293 54 7.80e-05 GAGAGAATTA GAGAAAGA AAGAATGAGA chrV:10726831-10726911 68 7.80e-05 GAAGTGATAA GAGAAAGA GAAAA chrV:13536350-13536430 40 9.41e-05 AATCTAATCT GAGAAAAG GAAATAATTG chrX:7590879-7590959 53 1.15e-04 CAATCACACA GAGAGAGG GGGCACTAGC chrIII:8520717-8520797 66 1.15e-04 GGACACTTGC GAGAGAGG AATGGCG chrIV:12209140-12209220 12 1.54e-04 AAAAATTTCA GAGAACAA AAATTAGTGT chrX:5212837-5212917 73 1.54e-04 TGTGAGTTGC GAGAACAA chrIV:11284161-11284241 52 1.54e-04 AGGGCGGTGT GAAAGAAA GGAAGTTAGA chrIV:5778458-5778538 71 1.54e-04 GAGAACAGTT GAGAACAA AG chrX:17003779-17003859 73 1.54e-04 ACGGCCCAAT GAAAGAAA chrX:15155174-15155254 56 1.75e-04 TTAAGACGTT GAGAGCGA AGAAGTTTAG chrII:6321170-6321250 4 2.05e-04 AGT GAAAAAAA ACTAAAATGG chrII:15205476-15205556 73 2.05e-04 ATCATTGACT GAAAAAAA chrIV:2052515-2052595 55 2.05e-04 TTTTTTTTCG GAAAAAAA GACGAAAAAA chrIII:10632231-10632311 41 2.43e-04 GAAGAAGCAG GAGAACGA TTTATGGGGC chrI:429266-429346 71 2.43e-04 GTGAAACAGT GAAAGAGA AA chrIV:5753443-5753523 43 3.00e-04 GTGAGGGACT GAGAGCGG TCTGAGCAAA chrV:5088463-5088543 32 3.00e-04 TTTTTTTGGT GAGAGCGG GGGGAAGAGT chrII:2748421-2748501 3 3.22e-04 CT GAAAAAAG AGACGCAGAC chrI:7332028-7332108 12 3.22e-04 TCTCTGATCC GAAAAAAG ACTCCATTGT chrIII:5843805-5843885 70 3.22e-04 TGAGAGCACC GAAAAAAG AGC chrV:4693312-4693392 43 3.39e-04 AAAAGAGTAC GAAAGCAA TTAGACAACT chrV:13200748-13200828 70 3.83e-04 TCCAATTACC GAAAACAA TAA chrX:8926520-8926600 34 3.83e-04 GGAGTTCTTG GAAAACAA TGTTGCTCAG chrV:1935743-1935823 46 3.99e-04 TAAATTAGTA GAAAAAGG AAGTGGGTGC chrII:15212603-15212683 3 4.33e-04 GT AAGAGAAA TGCCGTCTAC chrIV:5939294-5939374 71 4.33e-04 CAGAGAAAAT AAGAGAAA CA chrV:12554342-12554422 8 4.33e-04 AAGAAAA AAGAGAAA TGGAATGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4986959-4987039 1.6e-05 41_[+1]_31 chrII:3929599-3929679 1.6e-05 64_[+1]_8 chrI:12164793-12164873 1.6e-05 27_[+1]_45 chrV:5294719-5294799 1.6e-05 16_[+1]_56 chrIII:5134641-5134721 1.6e-05 9_[+1]_63 chrX:14288029-14288109 3.8e-05 39_[+1]_33 chrX:10767316-10767396 3.8e-05 51_[+1]_21 chrI:2020085-2020165 3.8e-05 4_[+1]_68 chrV:10727827-10727907 3.8e-05 51_[+1]_21 chrI:7749504-7749584 3.8e-05 64_[+1]_8 chrI:7747652-7747732 3.8e-05 4_[+1]_68 chrIII:5142112-5142192 3.8e-05 61_[+1]_11 chrI:5599538-5599618 5e-05 29_[+1]_43 chrX:12425602-12425682 5e-05 45_[+1]_27 chrIII:96310-96390 5e-05 7_[+1]_65 chrIV:6500939-6501019 5e-05 56_[+1]_16 chrIV:3654323-3654403 6.2e-05 37_[+1]_35 chrV:14851359-14851439 6.2e-05 33_[+1]_39 chrV:13202319-13202399 6.2e-05 71_[+1]_1 chrIV:13682910-13682990 6.2e-05 56_[+1]_16 chrV:11885252-11885332 7.8e-05 21_[+1]_51 chrX:14894522-14894602 7.8e-05 28_[+1]_44 chrII:5291213-5291293 7.8e-05 53_[+1]_19 chrV:10726831-10726911 7.8e-05 67_[+1]_5 chrV:13536350-13536430 9.4e-05 39_[+1]_33 chrX:7590879-7590959 0.00011 52_[+1]_20 chrIII:8520717-8520797 0.00011 65_[+1]_7 chrIV:12209140-12209220 0.00015 11_[+1]_61 chrX:5212837-5212917 0.00015 72_[+1] chrIV:11284161-11284241 0.00015 51_[+1]_21 chrIV:5778458-5778538 0.00015 70_[+1]_2 chrX:17003779-17003859 0.00015 72_[+1] chrX:15155174-15155254 0.00017 55_[+1]_17 chrII:6321170-6321250 0.00021 3_[+1]_69 chrII:15205476-15205556 0.00021 72_[+1] chrIV:2052515-2052595 0.00021 54_[+1]_18 chrIII:10632231-10632311 0.00024 40_[+1]_32 chrI:429266-429346 0.00024 70_[+1]_2 chrIV:5753443-5753523 0.0003 42_[+1]_30 chrV:5088463-5088543 0.0003 31_[+1]_41 chrII:2748421-2748501 0.00032 2_[+1]_70 chrI:7332028-7332108 0.00032 11_[+1]_61 chrIII:5843805-5843885 0.00032 69_[+1]_3 chrV:4693312-4693392 0.00034 42_[+1]_30 chrV:13200748-13200828 0.00038 69_[+1]_3 chrX:8926520-8926600 0.00038 33_[+1]_39 chrV:1935743-1935823 0.0004 45_[+1]_27 chrII:15212603-15212683 0.00043 2_[+1]_70 chrIV:5939294-5939374 0.00043 70_[+1]_2 chrV:12554342-12554422 0.00043 7_[+1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGARAAA width=8 seqs=50 chrIII:4986959-4987039 ( 42) GAGAGAAA 1 chrII:3929599-3929679 ( 65) GAGAGAAA 1 chrI:12164793-12164873 ( 28) GAGAGAAA 1 chrV:5294719-5294799 ( 17) GAGAGAAA 1 chrIII:5134641-5134721 ( 10) GAGAGAAA 1 chrX:14288029-14288109 ( 40) GAGAAAAA 1 chrX:10767316-10767396 ( 52) GAGAAAAA 1 chrI:2020085-2020165 ( 5) GAGAAAAA 1 chrV:10727827-10727907 ( 52) GAGAAAAA 1 chrI:7749504-7749584 ( 65) GAGAAAAA 1 chrI:7747652-7747732 ( 5) GAGAAAAA 1 chrIII:5142112-5142192 ( 62) GAGAAAAA 1 chrI:5599538-5599618 ( 30) GAGAGAGA 1 chrX:12425602-12425682 ( 46) GAGAGAGA 1 chrIII:96310-96390 ( 8) GAGAGAGA 1 chrIV:6500939-6501019 ( 57) GAGAGAGA 1 chrIV:3654323-3654403 ( 38) GAGAGAAG 1 chrV:14851359-14851439 ( 34) GAGAGAAG 1 chrV:13202319-13202399 ( 72) GAGAGAAG 1 chrIV:13682910-13682990 ( 57) GAGAGAAG 1 chrV:11885252-11885332 ( 22) GAGAAAGA 1 chrX:14894522-14894602 ( 29) GAGAAAGA 1 chrII:5291213-5291293 ( 54) GAGAAAGA 1 chrV:10726831-10726911 ( 68) GAGAAAGA 1 chrV:13536350-13536430 ( 40) GAGAAAAG 1 chrX:7590879-7590959 ( 53) GAGAGAGG 1 chrIII:8520717-8520797 ( 66) GAGAGAGG 1 chrIV:12209140-12209220 ( 12) GAGAACAA 1 chrX:5212837-5212917 ( 73) GAGAACAA 1 chrIV:11284161-11284241 ( 52) GAAAGAAA 1 chrIV:5778458-5778538 ( 71) GAGAACAA 1 chrX:17003779-17003859 ( 73) GAAAGAAA 1 chrX:15155174-15155254 ( 56) GAGAGCGA 1 chrII:6321170-6321250 ( 4) GAAAAAAA 1 chrII:15205476-15205556 ( 73) GAAAAAAA 1 chrIV:2052515-2052595 ( 55) GAAAAAAA 1 chrIII:10632231-10632311 ( 41) GAGAACGA 1 chrI:429266-429346 ( 71) GAAAGAGA 1 chrIV:5753443-5753523 ( 43) GAGAGCGG 1 chrV:5088463-5088543 ( 32) GAGAGCGG 1 chrII:2748421-2748501 ( 3) GAAAAAAG 1 chrI:7332028-7332108 ( 12) GAAAAAAG 1 chrIII:5843805-5843885 ( 70) GAAAAAAG 1 chrV:4693312-4693392 ( 43) GAAAGCAA 1 chrV:13200748-13200828 ( 70) GAAAACAA 1 chrX:8926520-8926600 ( 34) GAAAACAA 1 chrV:1935743-1935823 ( 46) GAAAAAGG 1 chrII:15212603-15212683 ( 3) AAGAGAAA 1 chrIV:5939294-5939374 ( 71) AAGAGAAA 1 chrV:12554342-12554422 ( 8) AAGAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4321 E= 1.2e-005 -224 -1229 219 -1229 182 -1229 -1229 -1229 -13 -1229 184 -1229 182 -1229 -1229 -1229 82 -1229 128 -1229 149 -10 -1229 -1229 126 -1229 64 -1229 138 -1229 34 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.2e-005 0.060000 0.000000 0.940000 0.000000 1.000000 0.000000 0.000000 0.000000 0.260000 0.000000 0.740000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.800000 0.200000 0.000000 0.000000 0.680000 0.000000 0.320000 0.000000 0.740000 0.000000 0.260000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 regular expression -------------------------------------------------------------------------------- GA[GA]A[AG][AC][AG][AG] -------------------------------------------------------------------------------- Time 5.10 secs. ******************************************************************************** ******************************************************************************** MOTIF YCAYGTGA MEME-2 width = 8 sites = 20 llr = 186 E-value = 1.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCAYGTGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::::9 pos.-specific C 5a:7:::: probability G 1:::a:a2 matrix T 5::4:a:: bits 2.3 * * * 2.1 * * * 1.8 ** *** 1.6 ** *** Relative 1.4 ** **** Entropy 1.1 ******* (13.4 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACGTGA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAYGTGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10157469-10157549 35 1.00e-05 ACGTCATGAA CCACGTGA TTTTGATTTG chrX:864372-864452 15 1.00e-05 TCTATGTCTG CCACGTGA GATTCTGGTT chrII:12625840-12625920 47 1.00e-05 TGTTTGGTCG CCACGTGA TCTTGCAAAA chrIII:5144349-5144429 72 1.00e-05 GGTCACATGA CCACGTGA T chrII:4745403-4745483 57 2.38e-05 CATGTTGGAA TCACGTGA AGCCCGTGAG chrV:10867773-10867853 40 2.38e-05 GACGTGGAAA TCACGTGA CTAGCTAAAA chrIV:8463219-8463299 24 2.38e-05 GACTATCATT TCACGTGA ATCTGACGGT chrIV:13911090-13911170 26 2.38e-05 GCCCAAATTT TCACGTGA GTGATACTTT chrIV:10782151-10782231 4 3.76e-05 CGG CCATGTGA AGATGAAAGT chrV:12635397-12635477 40 3.76e-05 CTGTCCCTAT CCATGTGA CCCTTTTGCA chrV:14095119-14095199 65 3.76e-05 TTTGATTGTC CCATGTGA CCGGAAAA chrII:7343079-7343159 70 3.76e-05 CAAATCCGCC CCATGTGA CAA chrI:6556272-6556352 48 5.65e-05 CATGCGCCCA TCATGTGA CCTATTAAGT chrX:10772897-10772977 47 5.65e-05 AATTATGGTC TCATGTGA ACGTCACATG chrII:14036871-14036951 30 5.65e-05 CTCCTCACCC TCATGTGA CATTGTGAGG chrIV:3654323-3654403 68 7.34e-05 CCCGCCGGGT GCACGTGA ACCCC chrV:11802568-11802648 43 7.34e-05 AGCGTGGCGT CCACGTGG ATATGATAAG chrX:13539902-13539982 48 7.34e-05 TCTTTAAGAG GCACGTGA CTCATGTTGA chrV:6505566-6505646 40 8.33e-05 TTCACATGTG TCACGTGG ATAGTTTCTG chrII:12622334-12622414 44 8.33e-05 AAGGATCCGG TCACGTGG TGGATGTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAYGTGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10157469-10157549 1e-05 34_[+2]_38 chrX:864372-864452 1e-05 14_[+2]_58 chrII:12625840-12625920 1e-05 46_[+2]_26 chrIII:5144349-5144429 1e-05 71_[+2]_1 chrII:4745403-4745483 2.4e-05 56_[+2]_16 chrV:10867773-10867853 2.4e-05 39_[+2]_33 chrIV:8463219-8463299 2.4e-05 23_[+2]_49 chrIV:13911090-13911170 2.4e-05 25_[+2]_47 chrIV:10782151-10782231 3.8e-05 3_[+2]_69 chrV:12635397-12635477 3.8e-05 39_[+2]_33 chrV:14095119-14095199 3.8e-05 64_[+2]_8 chrII:7343079-7343159 3.8e-05 69_[+2]_3 chrI:6556272-6556352 5.6e-05 47_[+2]_25 chrX:10772897-10772977 5.6e-05 46_[+2]_26 chrII:14036871-14036951 5.6e-05 29_[+2]_43 chrIV:3654323-3654403 7.3e-05 67_[+2]_5 chrV:11802568-11802648 7.3e-05 42_[+2]_30 chrX:13539902-13539982 7.3e-05 47_[+2]_25 chrV:6505566-6505646 8.3e-05 39_[+2]_33 chrII:12622334-12622414 8.3e-05 43_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAYGTGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCAYGTGA width=8 seqs=20 chrI:10157469-10157549 ( 35) CCACGTGA 1 chrX:864372-864452 ( 15) CCACGTGA 1 chrII:12625840-12625920 ( 47) CCACGTGA 1 chrIII:5144349-5144429 ( 72) CCACGTGA 1 chrII:4745403-4745483 ( 57) TCACGTGA 1 chrV:10867773-10867853 ( 40) TCACGTGA 1 chrIV:8463219-8463299 ( 24) TCACGTGA 1 chrIV:13911090-13911170 ( 26) TCACGTGA 1 chrIV:10782151-10782231 ( 4) CCATGTGA 1 chrV:12635397-12635477 ( 40) CCATGTGA 1 chrV:14095119-14095199 ( 65) CCATGTGA 1 chrII:7343079-7343159 ( 70) CCATGTGA 1 chrI:6556272-6556352 ( 48) TCATGTGA 1 chrX:10772897-10772977 ( 47) TCATGTGA 1 chrII:14036871-14036951 ( 30) TCATGTGA 1 chrIV:3654323-3654403 ( 68) GCACGTGA 1 chrV:11802568-11802648 ( 43) CCACGTGG 1 chrX:13539902-13539982 ( 48) GCACGTGA 1 chrV:6505566-6505646 ( 40) TCACGTGG 1 chrII:12622334-12622414 ( 44) TCACGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAYGTGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 1.6e+000 -1097 107 -104 61 -1097 222 -1097 -1097 182 -1097 -1097 -1097 -1097 160 -1097 24 -1097 -1097 228 -1097 -1097 -1097 -1097 176 -1097 -1097 228 -1097 158 -1097 -46 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAYGTGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.6e+000 0.000000 0.450000 0.100000 0.450000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.650000 0.000000 0.350000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.850000 0.000000 0.150000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCAYGTGA MEME-2 regular expression -------------------------------------------------------------------------------- [CT]CA[CT]GTGA -------------------------------------------------------------------------------- Time 8.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTTYTCT MEME-3 width = 8 sites = 98 llr = 631 E-value = 7.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTTYTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C 7:214:72 probability G ::1::::: matrix T 38796a38 bits 2.3 2.1 1.8 * 1.6 * Relative 1.4 * * Entropy 1.1 * * *** (9.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTTTTCT consensus TAC C TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:2454929-2455009 43 3.05e-05 GAAATATTGA CTTTTTCT CTGCGACTCC chrX:637815-637895 17 3.05e-05 GCTATCAACC CTTTTTCT TGCTGTCTTT chrX:13539902-13539982 21 3.05e-05 CAATCTTCAA CTTTTTCT TCGACACATT chrI:9428278-9428358 39 3.05e-05 ATCTCCGCCC CTTTTTCT GTATATTTGT chrII:14036871-14036951 2 3.05e-05 t ctttttct gctGCAGCTA chrX:6796333-6796413 12 3.05e-05 AGCGAAACAC CTTTTTCT TCGCTCTCTT chrX:7040915-7040995 51 3.05e-05 TTTCTTCTCT CTTTTTCT AAAAGGAAAT chrIII:5134641-5134721 50 3.05e-05 ATTTTCACGC CTTTTTCT TGCTCTCGGA chrV:4693312-4693392 72 5.27e-05 TCAGTTGTTG CTTTCTCT A chrI:6882128-6882208 37 5.27e-05 GGCTCCGAGT CTTTCTCT CGGGCGGTTC chrX:17519662-17519742 22 5.27e-05 TCACGGCCCC CTTTCTCT CGTGGGGGCC chrV:9958784-9958864 54 5.27e-05 TGTGTCTCCG CTTTCTCT CGATCTTCTT chrIII:4502085-4502165 20 5.27e-05 TCAACAAACT CTTTCTCT TAAGAGCAAA chrI:7114863-7114943 33 5.27e-05 TTTTGCTGGT CTTTCTCT ATTAAATCTG chrIV:12200961-12201041 57 5.27e-05 ACCAGAGGTC CTTTCTCT CTCTCTCACC chrIII:5125924-5126004 20 5.27e-05 AAGAGCAGAT CTTTCTCT CTTTCAGTGG chrIII:7534815-7534895 36 7.49e-05 TGACGTCTCC CTCTTTCT CCTCTTTTCT chrIII:5140836-5140916 6 7.49e-05 TCTAT CTCTTTCT CCAGAAATCT chrX:11482790-11482870 41 9.11e-05 CTGAACGCGA CTCTCTCT TGCTCTCTCG chrII:15205476-15205556 37 9.11e-05 Atctctattt ctctctct ctctctctct chrI:429266-429346 32 9.11e-05 GAAAACCGGT CTCTCTCT TCCCCTGACC chrX:14780296-14780376 32 1.13e-04 TTAAGTTCAC CTTTTTCC TGTTAAACAT chrV:8805240-8805320 48 1.13e-04 TCCATCTTTT CTTTTTCC CTCGTGAGTT chrIV:15017083-15017163 25 2.42e-04 CTTCCTCCCT TTTTTTCT ATTCGCCAAA chrX:13739409-13739489 57 2.42e-04 TTTTCACGTT TTTTTTCT TCGGGGGCCA chrX:15335027-15335107 67 2.42e-04 TCTCTACCGT TTTTTTCT GTCTGT chrX:11315388-11315468 42 2.42e-04 AATTGGTTTC CTTTTTTT CACCTAGTTC chrX:864372-864452 31 2.42e-04 GAGATTCTGG TTTTTTCT TCTTTTGGAA chrX:12689959-12690039 1 2.42e-04 . CTTTTTTT GGACTTTGAA chrV:6998501-6998581 42 2.42e-04 TCTGTTCGCA TTTTTTCT ATTCCGTTTT chrX:3111115-3111195 1 2.42e-04 . CTTTTTTT TTTTGGTTCT chrV:12554342-12554422 45 2.42e-04 TCTATCATCT CATTTTCT TCATGTTTTC chrX:6856970-6857050 10 2.42e-04 CGTTCTTTT CTTTTTTT TTACCAATGG chrI:4433228-4433308 25 2.42e-04 CTATTTCCTT TTTTTTCT GCTCTCATCT chrV:11428825-11428905 3 2.42e-04 GT CTTTTTTT TTGAAACTTT chrII:13609790-13609870 46 3.25e-04 TCTCCGTCTC TTTTCTCT TTTCCCGACG chrX:6741135-6741215 25 3.25e-04 GATCAATGTA TTTTCTCT CGTACTCATC chrIV:7470165-7470245 51 3.25e-04 CATTTCTTAT CATTCTCT TCGTGATCAT chrII:7343079-7343159 31 3.25e-04 TCTTTTTAAC CATTCTCT GAGTGACTAT chrIV:5753443-5753523 22 3.25e-04 TTTGTCTTCA TTTTCTCT TTTGTGAGGG chrV:11529723-11529803 6 3.25e-04 TGTAT TTTTCTCT TAAACTCTCC chrII:11642225-11642305 53 3.25e-04 TCTTTGAAGA TTTTCTCT GTGTCTCCAC chrIV:7612703-7612783 10 3.41e-04 CTTTTTATT CTCTTTCC GTAGGGCTTC chrII:11353646-11353726 2 3.41e-04 A CTCTTTCC CCGTGCCTTT chrII:6321170-6321250 48 4.78e-04 TCTGTCGAGA CTCTTTTT AGCGGGTATT chrX:3492628-3492708 72 4.78e-04 TTCAAATTAT CTCTTTTT G chrII:2748421-2748501 56 4.78e-04 TAACGGACAG CTTCTTCT CCAAATTCTT chrX:10772897-10772977 73 4.78e-04 TGGTTCCAAT CACTTTCT chrI:9083085-9083165 38 4.78e-04 CCACCAATCT CTCTTTTT GTCCATTTTC chrIV:8463219-8463299 67 4.78e-04 GTCATAATCA CTTCTTCT GACCTG chrIV:6500939-6501019 24 4.78e-04 TCTCTGTTTA CTCTTTTT TGATCTTGTT chrIV:5811216-5811296 39 4.78e-04 CAGCTGCCTT CTTCTTCT CATCTAACCT chrV:20704176-20704256 38 5.70e-04 TCAAACCGCA CACTCTCT CACTCGGAAA chrII:11737523-11737603 68 5.70e-04 CAGGATTACC CACTCTCT CGTCG chrIII:4505864-4505944 15 5.70e-04 ATCGTCTCTT CTGTCTCT TACGACTCAA chrIII:8283674-8283754 61 5.70e-04 GTAACAGGAA CTGTCTCT ATGTGTGACA chrIII:9119082-9119162 53 5.70e-04 ATGTGTGGCA CTGTCTCT GCCATCGACA chrX:7990513-7990593 5 5.70e-04 TGCA CTTCCTCT TTCAACTTCT chrX:1536289-1536369 29 5.70e-04 TTGTCTGGCA CACTCTCT GATCCCTGTC chrI:6556272-6556352 23 6.52e-04 TGGACTCATA CTTTTTTC GAATTGACAT chrII:9669124-9669204 9 6.52e-04 GATACATA CATTTTCC GAGAGGAGTA chrX:12899315-12899395 53 6.52e-04 TTATTTCTCC TTTTTTCC ACTTTTCTGT chrIV:4676137-4676217 60 6.52e-04 GCTACTTTCA CTTTTTTC ATTACAGTTA chrX:13034508-13034588 1 6.52e-04 . TTTTTTCC ATCAAATTTG chrII:14928948-14929028 27 7.12e-04 TCACTTTTTA TTTTCTCC TTCCCTCGCG chrIII:12673525-12673605 71 8.50e-04 CCAGGCAAGt tttttttt tt chrV:9408974-9409054 37 8.50e-04 GAATTTCTGT TTTTTTTT CGGTGGGACA chrIV:9869625-9869705 15 8.50e-04 AGAAACATTT CATTTTTT ATGGAAACTT chrX:617845-617925 61 8.50e-04 CAACCCTTCG TTTTTTTT GAGCTAACAG chrIII:6009121-6009201 41 8.50e-04 GAGCAAGTCG TTTTTTTT GAGTAGAAAA chrIV:2052515-2052595 44 8.50e-04 AAAAAGTCGG TTTTTTTT TCGGAAAAAA chrV:5088463-5088543 20 8.50e-04 GAAAGCTGTT TTTTTTTT TGGTGAGAGC chrII:12625840-12625920 68 8.50e-04 TGCAAAACCG TATTTTCT TGTCA chrI:9149339-9149419 6 9.51e-04 TTCCC TTTTCTTT GGTTTTCTCA chrX:13541492-13541572 38 9.51e-04 CTGACACCAT CATTCTTT TCGACGCGAC chrII:6845224-6845304 2 9.51e-04 A TTTTCTTT CCGTTATTCT chrIV:309676-309756 27 9.51e-04 TGACTTCTTT CATTCTTT GAAAGGAAAT chrIV:13696075-13696155 63 1.00e-03 TATTCTTACG CTTTGTCT TCCGGGAAGA chrIII:6145465-6145545 17 1.00e-03 GACAATCTAG CTCCCTCT CAATCAGTCC chrIII:5121776-5121856 62 1.00e-03 CGTGAATTGG CTTTGTCT CACGAAGAAA chrIV:10782151-10782231 64 1.09e-03 AGATTTATGA CACTTTCC TAATAGAGA chrX:4982200-4982280 25 1.09e-03 CCAACGTCGT CTTCTTCC CCTCTTCCGT chrIII:12306118-12306198 3 1.09e-03 CC CTTCTTCC GTCTTACCAA chrX:8238685-8238765 71 1.09e-03 AACAGTTTAA TTCTTTCC AC chrII:7815556-7815636 48 1.09e-03 CACTAATACA CTTCTTCC GGAGGGATTC chrIV:5764532-5764612 18 1.16e-03 AAATAGAACC CTCTCTTC GCGTGGTATA chrI:6883521-6883601 52 1.42e-03 TGTTTGTGTG CACTTTTT GGATCAGTGT chrX:16116379-16116459 61 1.42e-03 AGTTGATCGA TTGTTTCT CCATTTTACC chrIV:13911090-13911170 38 1.42e-03 ACGTGAGTGA TACTTTCT AGAAGATAGA chrX:9147098-9147178 9 1.42e-03 TCGCGACG CTGTTTTT GAACCATTGG chrV:2134443-2134523 66 1.61e-03 TCTAAAAAGA TACTCTCT GGCTCGC chrX:5896098-5896178 5 1.61e-03 TTTT CACTCTTT GTTTCGTAAA chrV:8543553-8543633 57 1.61e-03 ATTAAGAGGG TTGTCTCT GCAAATAGAT chrX:6664115-6664195 40 1.71e-03 CTCCAGGAAA CATTTTTC TGATAAGTTT chrIV:8028462-8028542 35 1.78e-03 GCAATTTGAT CATTCTTC GCGCGCATCT chrII:11286698-11286778 2 1.78e-03 T TATTCTCC CGCGCGTTGT chrX:2893106-2893186 19 1.78e-03 TTTCTAGCAT CATTCTTC AGTAGCACGG chrIII:5133383-5133463 72 2.17e-03 GTTTTTACGA CTTTTTGT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:2454929-2455009 3e-05 42_[+3]_30 chrX:637815-637895 3e-05 16_[+3]_56 chrX:13539902-13539982 3e-05 20_[+3]_52 chrI:9428278-9428358 3e-05 38_[+3]_34 chrII:14036871-14036951 3e-05 1_[+3]_71 chrX:6796333-6796413 3e-05 11_[+3]_61 chrX:7040915-7040995 3e-05 50_[+3]_22 chrIII:5134641-5134721 3e-05 49_[+3]_23 chrV:4693312-4693392 5.3e-05 71_[+3]_1 chrI:6882128-6882208 5.3e-05 36_[+3]_36 chrX:17519662-17519742 5.3e-05 21_[+3]_51 chrV:9958784-9958864 5.3e-05 53_[+3]_19 chrIII:4502085-4502165 5.3e-05 19_[+3]_53 chrI:7114863-7114943 5.3e-05 32_[+3]_40 chrIV:12200961-12201041 5.3e-05 56_[+3]_16 chrIII:5125924-5126004 5.3e-05 19_[+3]_53 chrIII:7534815-7534895 7.5e-05 35_[+3]_37 chrIII:5140836-5140916 7.5e-05 5_[+3]_67 chrX:11482790-11482870 9.1e-05 40_[+3]_32 chrII:15205476-15205556 9.1e-05 36_[+3]_36 chrI:429266-429346 9.1e-05 31_[+3]_41 chrX:14780296-14780376 0.00011 31_[+3]_41 chrV:8805240-8805320 0.00011 47_[+3]_25 chrIV:15017083-15017163 0.00024 24_[+3]_48 chrX:13739409-13739489 0.00024 56_[+3]_16 chrX:15335027-15335107 0.00024 66_[+3]_6 chrX:11315388-11315468 0.00024 41_[+3]_31 chrX:864372-864452 0.00024 30_[+3]_42 chrX:12689959-12690039 0.00024 [+3]_72 chrV:6998501-6998581 0.00024 41_[+3]_31 chrX:3111115-3111195 0.00024 [+3]_72 chrV:12554342-12554422 0.00024 44_[+3]_28 chrX:6856970-6857050 0.00024 9_[+3]_63 chrI:4433228-4433308 0.00024 24_[+3]_48 chrV:11428825-11428905 0.00024 2_[+3]_70 chrII:13609790-13609870 0.00032 45_[+3]_27 chrX:6741135-6741215 0.00032 24_[+3]_48 chrIV:7470165-7470245 0.00032 50_[+3]_22 chrII:7343079-7343159 0.00032 30_[+3]_42 chrIV:5753443-5753523 0.00032 21_[+3]_51 chrV:11529723-11529803 0.00032 5_[+3]_67 chrII:11642225-11642305 0.00032 52_[+3]_20 chrIV:7612703-7612783 0.00034 9_[+3]_63 chrII:11353646-11353726 0.00034 1_[+3]_71 chrII:6321170-6321250 0.00048 47_[+3]_25 chrX:3492628-3492708 0.00048 71_[+3]_1 chrII:2748421-2748501 0.00048 55_[+3]_17 chrX:10772897-10772977 0.00048 72_[+3] chrI:9083085-9083165 0.00048 37_[+3]_35 chrIV:8463219-8463299 0.00048 66_[+3]_6 chrIV:6500939-6501019 0.00048 23_[+3]_49 chrIV:5811216-5811296 0.00048 38_[+3]_34 chrV:20704176-20704256 0.00057 37_[+3]_35 chrII:11737523-11737603 0.00057 67_[+3]_5 chrIII:4505864-4505944 0.00057 14_[+3]_58 chrIII:8283674-8283754 0.00057 60_[+3]_12 chrIII:9119082-9119162 0.00057 52_[+3]_20 chrX:7990513-7990593 0.00057 4_[+3]_68 chrX:1536289-1536369 0.00057 28_[+3]_44 chrI:6556272-6556352 0.00065 22_[+3]_50 chrII:9669124-9669204 0.00065 8_[+3]_64 chrX:12899315-12899395 0.00065 52_[+3]_20 chrIV:4676137-4676217 0.00065 59_[+3]_13 chrX:13034508-13034588 0.00065 [+3]_72 chrII:14928948-14929028 0.00071 26_[+3]_46 chrIII:12673525-12673605 0.00085 70_[+3]_2 chrV:9408974-9409054 0.00085 36_[+3]_36 chrIV:9869625-9869705 0.00085 14_[+3]_58 chrX:617845-617925 0.00085 60_[+3]_12 chrIII:6009121-6009201 0.00085 40_[+3]_32 chrIV:2052515-2052595 0.00085 43_[+3]_29 chrV:5088463-5088543 0.00085 19_[+3]_53 chrII:12625840-12625920 0.00085 67_[+3]_5 chrI:9149339-9149419 0.00095 5_[+3]_67 chrX:13541492-13541572 0.00095 37_[+3]_35 chrII:6845224-6845304 0.00095 1_[+3]_71 chrIV:309676-309756 0.00095 26_[+3]_46 chrIV:13696075-13696155 0.001 62_[+3]_10 chrIII:6145465-6145545 0.001 16_[+3]_56 chrIII:5121776-5121856 0.001 61_[+3]_11 chrIV:10782151-10782231 0.0011 63_[+3]_9 chrX:4982200-4982280 0.0011 24_[+3]_48 chrIII:12306118-12306198 0.0011 2_[+3]_70 chrX:8238685-8238765 0.0011 70_[+3]_2 chrII:7815556-7815636 0.0011 47_[+3]_25 chrIV:5764532-5764612 0.0012 17_[+3]_55 chrI:6883521-6883601 0.0014 51_[+3]_21 chrX:16116379-16116459 0.0014 60_[+3]_12 chrIV:13911090-13911170 0.0014 37_[+3]_35 chrX:9147098-9147178 0.0014 8_[+3]_64 chrV:2134443-2134523 0.0016 65_[+3]_7 chrX:5896098-5896178 0.0016 4_[+3]_68 chrV:8543553-8543633 0.0016 56_[+3]_16 chrX:6664115-6664195 0.0017 39_[+3]_33 chrIV:8028462-8028542 0.0018 34_[+3]_38 chrII:11286698-11286778 0.0018 1_[+3]_71 chrX:2893106-2893186 0.0018 18_[+3]_54 chrIII:5133383-5133463 0.0022 71_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTTYTCT width=8 seqs=98 chrII:2454929-2455009 ( 43) CTTTTTCT 1 chrX:637815-637895 ( 17) CTTTTTCT 1 chrX:13539902-13539982 ( 21) CTTTTTCT 1 chrI:9428278-9428358 ( 39) CTTTTTCT 1 chrII:14036871-14036951 ( 2) CTTTTTCT 1 chrX:6796333-6796413 ( 12) CTTTTTCT 1 chrX:7040915-7040995 ( 51) CTTTTTCT 1 chrIII:5134641-5134721 ( 50) CTTTTTCT 1 chrV:4693312-4693392 ( 72) CTTTCTCT 1 chrI:6882128-6882208 ( 37) CTTTCTCT 1 chrX:17519662-17519742 ( 22) CTTTCTCT 1 chrV:9958784-9958864 ( 54) CTTTCTCT 1 chrIII:4502085-4502165 ( 20) CTTTCTCT 1 chrI:7114863-7114943 ( 33) CTTTCTCT 1 chrIV:12200961-12201041 ( 57) CTTTCTCT 1 chrIII:5125924-5126004 ( 20) CTTTCTCT 1 chrIII:7534815-7534895 ( 36) CTCTTTCT 1 chrIII:5140836-5140916 ( 6) CTCTTTCT 1 chrX:11482790-11482870 ( 41) CTCTCTCT 1 chrII:15205476-15205556 ( 37) CTCTCTCT 1 chrI:429266-429346 ( 32) CTCTCTCT 1 chrX:14780296-14780376 ( 32) CTTTTTCC 1 chrV:8805240-8805320 ( 48) CTTTTTCC 1 chrIV:15017083-15017163 ( 25) TTTTTTCT 1 chrX:13739409-13739489 ( 57) TTTTTTCT 1 chrX:15335027-15335107 ( 67) TTTTTTCT 1 chrX:11315388-11315468 ( 42) CTTTTTTT 1 chrX:864372-864452 ( 31) TTTTTTCT 1 chrX:12689959-12690039 ( 1) CTTTTTTT 1 chrV:6998501-6998581 ( 42) TTTTTTCT 1 chrX:3111115-3111195 ( 1) CTTTTTTT 1 chrV:12554342-12554422 ( 45) CATTTTCT 1 chrX:6856970-6857050 ( 10) CTTTTTTT 1 chrI:4433228-4433308 ( 25) TTTTTTCT 1 chrV:11428825-11428905 ( 3) CTTTTTTT 1 chrII:13609790-13609870 ( 46) TTTTCTCT 1 chrX:6741135-6741215 ( 25) TTTTCTCT 1 chrIV:7470165-7470245 ( 51) CATTCTCT 1 chrII:7343079-7343159 ( 31) CATTCTCT 1 chrIV:5753443-5753523 ( 22) TTTTCTCT 1 chrV:11529723-11529803 ( 6) TTTTCTCT 1 chrII:11642225-11642305 ( 53) TTTTCTCT 1 chrIV:7612703-7612783 ( 10) CTCTTTCC 1 chrII:11353646-11353726 ( 2) CTCTTTCC 1 chrII:6321170-6321250 ( 48) CTCTTTTT 1 chrX:3492628-3492708 ( 72) CTCTTTTT 1 chrII:2748421-2748501 ( 56) CTTCTTCT 1 chrX:10772897-10772977 ( 73) CACTTTCT 1 chrI:9083085-9083165 ( 38) CTCTTTTT 1 chrIV:8463219-8463299 ( 67) CTTCTTCT 1 chrIV:6500939-6501019 ( 24) CTCTTTTT 1 chrIV:5811216-5811296 ( 39) CTTCTTCT 1 chrV:20704176-20704256 ( 38) CACTCTCT 1 chrII:11737523-11737603 ( 68) CACTCTCT 1 chrIII:4505864-4505944 ( 15) CTGTCTCT 1 chrIII:8283674-8283754 ( 61) CTGTCTCT 1 chrIII:9119082-9119162 ( 53) CTGTCTCT 1 chrX:7990513-7990593 ( 5) CTTCCTCT 1 chrX:1536289-1536369 ( 29) CACTCTCT 1 chrI:6556272-6556352 ( 23) CTTTTTTC 1 chrII:9669124-9669204 ( 9) CATTTTCC 1 chrX:12899315-12899395 ( 53) TTTTTTCC 1 chrIV:4676137-4676217 ( 60) CTTTTTTC 1 chrX:13034508-13034588 ( 1) TTTTTTCC 1 chrII:14928948-14929028 ( 27) TTTTCTCC 1 chrIII:12673525-12673605 ( 71) TTTTTTTT 1 chrV:9408974-9409054 ( 37) TTTTTTTT 1 chrIV:9869625-9869705 ( 15) CATTTTTT 1 chrX:617845-617925 ( 61) TTTTTTTT 1 chrIII:6009121-6009201 ( 41) TTTTTTTT 1 chrIV:2052515-2052595 ( 44) TTTTTTTT 1 chrV:5088463-5088543 ( 20) TTTTTTTT 1 chrII:12625840-12625920 ( 68) TATTTTCT 1 chrI:9149339-9149419 ( 6) TTTTCTTT 1 chrX:13541492-13541572 ( 38) CATTCTTT 1 chrII:6845224-6845304 ( 2) TTTTCTTT 1 chrIV:309676-309756 ( 27) CATTCTTT 1 chrIV:13696075-13696155 ( 63) CTTTGTCT 1 chrIII:6145465-6145545 ( 17) CTCCCTCT 1 chrIII:5121776-5121856 ( 62) CTTTGTCT 1 chrIV:10782151-10782231 ( 64) CACTTTCC 1 chrX:4982200-4982280 ( 25) CTTCTTCC 1 chrIII:12306118-12306198 ( 3) CTTCTTCC 1 chrX:8238685-8238765 ( 71) TTCTTTCC 1 chrII:7815556-7815636 ( 48) CTTCTTCC 1 chrIV:5764532-5764612 ( 18) CTCTCTTC 1 chrI:6883521-6883601 ( 52) CACTTTTT 1 chrX:16116379-16116459 ( 61) TTGTTTCT 1 chrIV:13911090-13911170 ( 38) TACTTTCT 1 chrX:9147098-9147178 ( 9) CTGTTTTT 1 chrV:2134443-2134523 ( 66) TACTCTCT 1 chrX:5896098-5896178 ( 5) CACTCTTT 1 chrV:8543553-8543633 ( 57) TTGTCTCT 1 chrX:6664115-6664195 ( 40) CATTTTTC 1 chrIV:8028462-8028542 ( 35) CATTCTTC 1 chrII:11286698-11286778 ( 2) TATTCTCC 1 chrX:2893106-2893186 ( 19) CATTCTTC 1 chrIII:5133383-5133463 ( 72) CTTTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.65378 E= 7.1e+002 -1326 171 -1326 0 -41 -1326 -1326 141 -1326 13 -175 125 -1326 -139 -1326 164 -1326 85 -333 100 -1326 -1326 -1326 176 -1326 169 -433 0 -1326 -7 -1326 143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 7.1e+002 0.000000 0.704082 0.000000 0.295918 0.214286 0.000000 0.000000 0.785714 0.000000 0.234694 0.061224 0.704082 0.000000 0.081633 0.000000 0.918367 0.000000 0.387755 0.020408 0.591837 0.000000 0.000000 0.000000 1.000000 0.000000 0.693878 0.010204 0.295918 0.000000 0.204082 0.000000 0.795918 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTYTCT MEME-3 regular expression -------------------------------------------------------------------------------- [CT][TA][TC]T[TC]T[CT][TC] -------------------------------------------------------------------------------- Time 12.64 secs. ******************************************************************************** ******************************************************************************** MOTIF GACGCAGA MEME-4 width = 8 sites = 7 llr = 78 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACGCAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::7:a pos.-specific C ::a:a3:: probability G a::a::a: matrix T :::::::: bits 2.3 * *** * 2.1 * *** * 1.8 ***** ** 1.6 ***** ** Relative 1.4 ***** ** Entropy 1.1 ******** (16.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GACGCAGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13152821-13152901 36 9.26e-06 GAAATCGAGA GACGCAGA GAAGCCGCGA chrII:2748421-2748501 12 9.26e-06 TGAAAAAAGA GACGCAGA CAGCTTGCGG chrIII:96310-96390 34 9.26e-06 tgcagtgaga gacgcaga gaTTTGGTTC chrI:7332028-7332108 63 9.26e-06 TAGACACAGC GACGCAGA AAGAGCTATA chrII:9481599-9481679 33 9.26e-06 GAGATTAATA GACGCAGA TAAAAAGAGC chrIV:3519561-3519641 2 1.63e-05 A GACGCCGA CAGACCGACG chrX:6796333-6796413 47 1.63e-05 CAACCCCACC GACGCCGA TCAAGCGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13152821-13152901 9.3e-06 35_[+4]_37 chrII:2748421-2748501 9.3e-06 11_[+4]_61 chrIII:96310-96390 9.3e-06 33_[+4]_39 chrI:7332028-7332108 9.3e-06 62_[+4]_10 chrII:9481599-9481679 9.3e-06 32_[+4]_40 chrIV:3519561-3519641 1.6e-05 1_[+4]_71 chrX:6796333-6796413 1.6e-05 46_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACGCAGA width=8 seqs=7 chrIII:13152821-13152901 ( 36) GACGCAGA 1 chrII:2748421-2748501 ( 12) GACGCAGA 1 chrIII:96310-96390 ( 34) GACGCAGA 1 chrI:7332028-7332108 ( 63) GACGCAGA 1 chrII:9481599-9481679 ( 33) GACGCAGA 1 chrIV:3519561-3519641 ( 2) GACGCCGA 1 chrX:6796333-6796413 ( 47) GACGCCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 1.2e+003 -945 -945 228 -945 181 -945 -945 -945 -945 222 -945 -945 -945 -945 228 -945 -945 222 -945 -945 133 41 -945 -945 -945 -945 228 -945 181 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.2e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-4 regular expression -------------------------------------------------------------------------------- GACGC[AC]GA -------------------------------------------------------------------------------- Time 16.23 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCGTGTG MEME-5 width = 8 sites = 8 llr = 85 E-value = 5.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGTGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa8::::: probability G :::a:a3a matrix T ::3:a:8: bits 2.3 ** * * * 2.1 ** * * * 1.8 ** *** * 1.6 ** *** * Relative 1.4 ****** * Entropy 1.1 ******** (15.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCGTGTG consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6238463-6238543 13 7.56e-06 CCAAAGATGT CCCGTGTG CGAAAGCCCA chrV:5228601-5228681 32 7.56e-06 GCCTAGAGAG CCCGTGTG TGTGCTCCGT chrII:9344109-9344189 42 7.56e-06 CATATTGTCT CCCGTGTG TTCAAATTTC chrX:16352662-16352742 21 7.56e-06 CTGTAGCCCA CCCGTGTG AGCACATCCA chrIII:96310-96390 51 1.28e-05 agaTTTGGTT CCCGTGGG AGTCGTGTGA chrIII:5136357-5136437 23 1.28e-05 TGTCGATTGG CCCGTGGG GAAACCACTA chrX:5210654-5210734 57 2.32e-05 ACCTCTCCTT CCTGTGTG TGCACAATGT chrV:13202319-13202399 14 2.32e-05 GTCTATTACT CCTGTGTG TTCTGCCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6238463-6238543 7.6e-06 12_[+5]_60 chrV:5228601-5228681 7.6e-06 31_[+5]_41 chrII:9344109-9344189 7.6e-06 41_[+5]_31 chrX:16352662-16352742 7.6e-06 20_[+5]_52 chrIII:96310-96390 1.3e-05 50_[+5]_22 chrIII:5136357-5136437 1.3e-05 22_[+5]_50 chrX:5210654-5210734 2.3e-05 56_[+5]_16 chrV:13202319-13202399 2.3e-05 13_[+5]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGTGTG width=8 seqs=8 chrV:6238463-6238543 ( 13) CCCGTGTG 1 chrV:5228601-5228681 ( 32) CCCGTGTG 1 chrII:9344109-9344189 ( 42) CCCGTGTG 1 chrX:16352662-16352742 ( 21) CCCGTGTG 1 chrIII:96310-96390 ( 51) CCCGTGGG 1 chrIII:5136357-5136437 ( 23) CCCGTGGG 1 chrX:5210654-5210734 ( 57) CCTGTGTG 1 chrV:13202319-13202399 ( 14) CCTGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 5.9e+003 -965 222 -965 -965 -965 222 -965 -965 -965 180 -965 -24 -965 -965 228 -965 -965 -965 -965 176 -965 -965 228 -965 -965 -965 28 134 -965 -965 228 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.9e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTGTG MEME-5 regular expression -------------------------------------------------------------------------------- CC[CT]GTG[TG]G -------------------------------------------------------------------------------- Time 19.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5129314-5129394 6.99e-01 80 chrIII:5142112-5142192 6.33e-02 61_[+1(3.84e-05)]_11 chrIII:5120780-5120860 8.92e-02 80 chrIII:5125924-5126004 9.62e-03 19_[+3(5.27e-05)]_53 chrIII:5136357-5136437 2.53e-02 22_[+5(1.28e-05)]_50 chrIII:5140635-5140715 5.17e-01 80 chrIII:5144349-5144429 6.78e-04 71_[+2(1.00e-05)]_1 chrIII:5138693-5138773 6.68e-02 80 chrIV:5811216-5811296 2.43e-01 80 chrX:3834122-3834202 6.60e-01 80 chrIV:5848133-5848213 6.18e-01 80 chrIII:5129528-5129608 1.89e-01 80 chrV:8805240-8805320 1.39e-03 80 chrX:9147098-9147178 5.57e-02 80 chrIII:5134641-5134721 2.15e-03 9_[+1(1.62e-05)]_32_[+3(3.05e-05)]_\ 23 chrII:9481599-9481679 3.39e-04 32_[+4(9.26e-06)]_40 chrII:7815556-7815636 1.03e-01 80 chrI:7747652-7747732 7.20e-03 4_[+1(3.84e-05)]_68 chrV:11428825-11428905 3.08e-01 80 chrI:14809361-14809441 6.19e-01 80 chrIII:5133383-5133463 3.10e-02 80 chrV:11801586-11801666 4.88e-01 80 chrII:12622334-12622414 4.97e-02 43_[+2(8.33e-05)]_29 chrIII:5140836-5140916 5.89e-02 5_[+3(7.49e-05)]_67 chrI:4433228-4433308 1.92e-01 80 chrX:16991598-16991678 8.31e-01 80 chrIV:6500939-6501019 2.83e-02 54_[+1(5.01e-05)]_18 chrX:6844530-6844610 5.21e-01 80 chrIV:13695872-13695952 3.35e-01 80 chrI:429266-429346 1.11e-02 31_[+3(9.11e-05)]_41 chrIV:309676-309756 1.31e-01 80 chrIII:10632231-10632311 1.50e-01 80 chrIII:7534815-7534895 1.75e-02 35_[+3(7.49e-05)]_37 chrX:4802450-4802530 6.30e-01 80 chrI:5400317-5400397 7.68e-01 80 chrIV:13911090-13911170 1.97e-03 25_[+2(2.38e-05)]_47 chrX:8394431-8394511 3.11e-01 80 chrII:11642225-11642305 3.75e-01 80 chrV:10726831-10726911 1.77e-01 67_[+1(7.80e-05)]_5 chrII:11353646-11353726 1.52e-02 80 chrII:12625840-12625920 7.44e-04 46_[+2(1.00e-05)]_26 chrIV:12200961-12201041 1.22e-01 56_[+3(5.27e-05)]_16 chrX:15073051-15073131 3.69e-01 80 chrV:5088463-5088543 4.14e-02 80 chrIV:13682910-13682990 1.45e-01 56_[+1(6.18e-05)]_16 chrV:6505566-6505646 4.53e-03 39_[+2(8.33e-05)]_33 chrII:6845224-6845304 4.40e-01 80 chrV:13536350-13536430 3.63e-01 39_[+1(9.41e-05)]_33 chrX:9330873-9330953 8.68e-01 80 chrX:7040915-7040995 1.89e-01 50_[+3(3.05e-05)]_22 chrII:7628796-7628876 4.15e-01 80 chrIV:13704200-13704280 6.92e-01 80 chrII:5291213-5291293 9.30e-02 53_[+1(7.80e-05)]_19 chrIV:2052515-2052595 9.39e-03 80 chrX:16116379-16116459 6.94e-01 80 chrX:8926520-8926600 4.04e-01 80 chrX:6856970-6857050 3.24e-01 80 chrX:16352662-16352742 5.59e-03 20_[+5(7.56e-06)]_52 chrI:10033072-10033152 3.41e-01 80 chrX:6796333-6796413 1.83e-03 11_[+3(3.05e-05)]_27_[+4(1.63e-05)]_\ 15_[+3(3.05e-05)]_3 chrX:17421706-17421786 2.56e-01 80 chrX:1265511-1265591 3.86e-01 80 chrV:11529723-11529803 4.07e-02 80 chrV:12557153-12557233 8.73e-01 80 chrIV:8453949-8454029 5.52e-02 80 chrII:4981815-4981895 9.50e-01 80 chrIV:5753443-5753523 1.34e-02 80 chrII:7343079-7343159 1.29e-03 69_[+2(3.76e-05)]_3 chrI:7027801-7027881 1.82e-01 80 chrI:7036865-7036945 7.55e-01 80 chrV:4357498-4357578 2.09e-01 80 chrV:12554342-12554422 7.08e-02 80 chrX:3111115-3111195 5.08e-02 80 chrV:4908705-4908785 5.59e-01 80 chrX:1536289-1536369 7.05e-01 80 chrIII:5121776-5121856 3.63e-01 80 chrV:6998501-6998581 2.09e-01 80 chrII:14036871-14036951 1.39e-03 1_[+3(3.05e-05)]_20_[+2(5.65e-05)]_\ 43 chrX:13034508-13034588 1.53e-01 80 chrI:7749504-7749584 1.35e-02 64_[+1(3.84e-05)]_8 chrIV:7470165-7470245 3.11e-01 80 chrV:10727827-10727907 1.09e-01 51_[+1(3.84e-05)]_21 chrI:7114863-7114943 2.54e-01 32_[+3(5.27e-05)]_40 chrIII:8520717-8520797 3.21e-02 80 chrIV:326714-326794 1.16e-01 80 chrII:14928948-14929028 3.58e-01 80 chrX:17003779-17003859 5.06e-02 80 chrX:16481207-16481287 9.98e-01 80 chrI:2020085-2020165 6.93e-03 4_[+1(3.84e-05)]_68 chrI:7759222-7759302 9.58e-03 80 chrI:9428278-9428358 1.58e-01 38_[+3(3.05e-05)]_34 chrIV:5822201-5822281 4.87e-01 80 chrI:6883521-6883601 1.20e-01 80 chrX:14780296-14780376 3.18e-01 80 chrX:7990513-7990593 7.67e-02 80 chrIV:1056620-1056700 5.67e-01 80 chrX:8476436-8476516 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chrII:12050713-12050793 2.56e-01 80 chrIV:13696075-13696155 5.75e-01 80 chrV:11733633-11733713 9.29e-01 80 chrIII:6402493-6402573 2.97e-01 80 chrIII:10155143-10155223 8.92e-01 80 chrII:4745403-4745483 1.47e-03 56_[+2(2.38e-05)]_2_[+5(4.32e-05)]_\ 6 chrII:11737523-11737603 1.71e-01 80 chrIII:6352603-6352683 5.19e-01 80 chrX:13337150-13337230 9.48e-02 80 chrII:12264145-12264225 6.79e-01 80 chrIV:8028462-8028542 2.12e-01 80 chrV:20704176-20704256 9.66e-02 80 chrII:13609790-13609870 8.02e-03 80 chrIV:3858157-3858237 4.66e-01 80 chrV:9516413-9516493 6.43e-01 80 chrII:3929599-3929679 1.25e-01 1_[+1(3.84e-05)]_[+1(9.41e-05)]_47_\ [+1(1.62e-05)]_8 chrIV:5764532-5764612 7.38e-02 80 chrI:14710987-14711067 8.64e-01 80 chrIV:15017083-15017163 6.00e-02 80 chrIII:4986959-4987039 1.27e-02 41_[+1(1.62e-05)]_31 chrIV:11020113-11020193 5.86e-01 80 chrII:9669124-9669204 2.46e-01 80 chrI:6882128-6882208 1.09e-02 36_[+3(5.27e-05)]_36 chrIV:12209140-12209220 3.71e-01 80 chrI:6556272-6556352 1.32e-02 47_[+2(5.65e-05)]_25 chrV:4693312-4693392 2.94e-02 71_[+3(5.27e-05)]_1 chrIV:3654323-3654403 2.00e-03 37_[+1(6.18e-05)]_22_[+2(7.34e-05)]_\ 5 chrII:6321170-6321250 1.04e-01 80 chrI:9149339-9149419 4.53e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************