******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/tbp1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:2031918-2031998 1.0000 80 chrII:2736342-2736422 1.0000 80 chrX:16300004-16300084 1.0000 80 chrV:15106372-15106452 1.0000 80 chrX:8623536-8623616 1.0000 80 chrX:5485038-5485118 1.0000 80 chrIV:16843723-16843803 1.0000 80 chrIII:6663582-6663662 1.0000 80 chrIII:3108320-3108400 1.0000 80 chrIV:13140959-13141039 1.0000 80 chrIII:2889824-2889904 1.0000 80 chrIV:2800030-2800110 1.0000 80 chrIV:8412699-8412779 1.0000 80 chrII:2304716-2304796 1.0000 80 chrIV:16818703-16818783 1.0000 80 chrV:15429296-15429376 1.0000 80 chrIV:8964203-8964283 1.0000 80 chrIII:1982996-1983076 1.0000 80 chrV:7069792-7069872 1.0000 80 chrIII:3107693-3107773 1.0000 80 chrX:10299076-10299156 1.0000 80 chrIV:16681942-16682022 1.0000 80 chrIII:7597945-7598025 1.0000 80 chrV:19579671-19579751 1.0000 80 chrIV:16670924-16671004 1.0000 80 chrX:1589633-1589713 1.0000 80 chrI:12142880-12142960 1.0000 80 chrV:19484655-19484735 1.0000 80 chrI:2272419-2272499 1.0000 80 chrIII:2652856-2652936 1.0000 80 chrIII:629082-629162 1.0000 80 chrX:13973250-13973330 1.0000 80 chrIV:15170364-15170444 1.0000 80 chrII:13658579-13658659 1.0000 80 chrV:6711221-6711301 1.0000 80 chrII:14802678-14802758 1.0000 80 chrI:973842-973922 1.0000 80 chrIV:1407231-1407311 1.0000 80 chrV:8431455-8431535 1.0000 80 chrIII:3191888-3191968 1.0000 80 chrV:1561332-1561412 1.0000 80 chrII:1522113-1522193 1.0000 80 chrIII:2494897-2494977 1.0000 80 chrX:15770065-15770145 1.0000 80 chrX:1089282-1089362 1.0000 80 chrIII:2065093-2065173 1.0000 80 chrIV:1470530-1470610 1.0000 80 chrII:755115-755195 1.0000 80 chrIII:3186281-3186361 1.0000 80 chrV:16474827-16474907 1.0000 80 chrV:19581964-19582044 1.0000 80 chrX:8818598-8818678 1.0000 80 chrV:17947434-17947514 1.0000 80 chrX:14136991-14137071 1.0000 80 chrIV:16482319-16482399 1.0000 80 chrX:2801809-2801889 1.0000 80 chrIII:1981613-1981693 1.0000 80 chrX:30389-30469 1.0000 80 chrII:6798196-6798276 1.0000 80 chrIV:4949893-4949973 1.0000 80 chrX:1070770-1070850 1.0000 80 chrI:12606014-12606094 1.0000 80 chrIII:3101055-3101135 1.0000 80 chrIII:2290066-2290146 1.0000 80 chrIV:1394234-1394314 1.0000 80 chrI:5854842-5854922 1.0000 80 chrIII:1007292-1007372 1.0000 80 chrI:13694908-13694988 1.0000 80 chrIII:3188728-3188808 1.0000 80 chrX:11806615-11806695 1.0000 80 chrX:3949922-3950002 1.0000 80 chrX:11162953-11163033 1.0000 80 chrV:20119933-20120013 1.0000 80 chrIV:16260417-16260497 1.0000 80 chrIII:2137636-2137716 1.0000 80 chrX:865435-865515 1.0000 80 chrIV:17150622-17150702 1.0000 80 chrIV:8123685-8123765 1.0000 80 chrIV:1383463-1383543 1.0000 80 chrIII:1662556-1662636 1.0000 80 chrIII:8541182-8541262 1.0000 80 chrIV:2738623-2738703 1.0000 80 chrIII:3190799-3190879 1.0000 80 chrIII:3108961-3109041 1.0000 80 chrII:1100334-1100414 1.0000 80 chrIII:1048092-1048172 1.0000 80 chrI:13894866-13894946 1.0000 80 chrX:1972932-1973012 1.0000 80 chrIV:3681927-3682007 1.0000 80 chrII:1092161-1092241 1.0000 80 chrIII:3106464-3106544 1.0000 80 chrIII:2873256-2873336 1.0000 80 chrIII:6661839-6661919 1.0000 80 chrX:1830625-1830705 1.0000 80 chrII:6168873-6168953 1.0000 80 chrIII:2304314-2304394 1.0000 80 chrII:12668299-12668379 1.0000 80 chrV:19245833-19245913 1.0000 80 chrV:13027080-13027160 1.0000 80 chrV:13507245-13507325 1.0000 80 chrV:6917434-6917514 1.0000 80 chrII:11824811-11824891 1.0000 80 chrX:1629916-1629996 1.0000 80 chrIII:3099540-3099620 1.0000 80 chrII:1478716-1478796 1.0000 80 chrII:3031447-3031527 1.0000 80 chrII:1478157-1478237 1.0000 80 chrII:1482563-1482643 1.0000 80 chrIII:49811-49891 1.0000 80 chrV:17317924-17318004 1.0000 80 chrII:4928545-4928625 1.0000 80 chrIV:16731418-16731498 1.0000 80 chrII:1103070-1103150 1.0000 80 chrI:1331202-1331282 1.0000 80 chrX:12304398-12304478 1.0000 80 chrI:7718901-7718981 1.0000 80 chrIV:16555709-16555789 1.0000 80 chrIII:12192660-12192740 1.0000 80 chrX:1491190-1491270 1.0000 80 chrV:17826480-17826560 1.0000 80 chrIV:2656873-2656953 1.0000 80 chrI:12756316-12756396 1.0000 80 chrX:16208875-16208955 1.0000 80 chrX:6867087-6867167 1.0000 80 chrII:1477464-1477544 1.0000 80 chrIII:58890-58970 1.0000 80 chrV:19983968-19984048 1.0000 80 chrX:17400600-17400680 1.0000 80 chrIII:3109709-3109789 1.0000 80 chrII:1102383-1102463 1.0000 80 chrIV:11497426-11497506 1.0000 80 chrI:2636325-2636405 1.0000 80 chrI:12610389-12610469 1.0000 80 chrX:351572-351652 1.0000 80 chrIV:5350624-5350704 1.0000 80 chrIV:17127274-17127354 1.0000 80 chrIII:11473007-11473087 1.0000 80 chrI:13156392-13156472 1.0000 80 chrIII:1230835-1230915 1.0000 80 chrX:1939423-1939503 1.0000 80 chrX:9325909-9325989 1.0000 80 chrIII:2290708-2290788 1.0000 80 chrIII:3105369-3105449 1.0000 80 chrX:15319940-15320020 1.0000 80 chrV:706586-706666 1.0000 80 chrV:16219126-16219206 1.0000 80 chrI:432148-432228 1.0000 80 chrII:13605511-13605591 1.0000 80 chrIV:16583802-16583882 1.0000 80 chrV:14237552-14237632 1.0000 80 chrII:754350-754430 1.0000 80 chrI:400647-400727 1.0000 80 chrV:19985005-19985085 1.0000 80 chrIV:16577337-16577417 1.0000 80 chrV:17767916-17767996 1.0000 80 chrI:13324944-13325024 1.0000 80 chrI:7571795-7571875 1.0000 80 chrX:15751387-15751467 1.0000 80 chrX:1707450-1707530 1.0000 80 chrV:19667877-19667957 1.0000 80 chrX:14211323-14211403 1.0000 80 chrIII:49230-49310 1.0000 80 chrII:1814529-1814609 1.0000 80 chrX:1698614-1698694 1.0000 80 chrIII:1354672-1354752 1.0000 80 chrX:1089796-1089876 1.0000 80 chrV:19398551-19398631 1.0000 80 chrV:4310553-4310633 1.0000 80 chrV:20223880-20223960 1.0000 80 chrV:18912669-18912749 1.0000 80 chrIV:9000824-9000904 1.0000 80 chrIV:6562177-6562257 1.0000 80 chrII:2722149-2722229 1.0000 80 chrIV:1390259-1390339 1.0000 80 chrIII:1009942-1010022 1.0000 80 chrX:16523966-16524046 1.0000 80 chrIV:2747555-2747635 1.0000 80 chrI:4755062-4755142 1.0000 80 chrV:20217052-20217132 1.0000 80 chrIII:11478916-11478996 1.0000 80 chrIII:7378916-7378996 1.0000 80 chrII:1481826-1481906 1.0000 80 chrIII:6056341-6056421 1.0000 80 chrX:13717160-13717240 1.0000 80 chrIV:13430301-13430381 1.0000 80 chrIII:2129527-2129607 1.0000 80 chrI:5298190-5298270 1.0000 80 chrV:18849294-18849374 1.0000 80 chrX:9025686-9025766 1.0000 80 chrIII:302677-302757 1.0000 80 chrX:8826177-8826257 1.0000 80 chrIII:11609069-11609149 1.0000 80 chrII:12435614-12435694 1.0000 80 chrIV:11231531-11231611 1.0000 80 chrX:13697663-13697743 1.0000 80 chrIII:3355902-3355982 1.0000 80 chrV:20347821-20347901 1.0000 80 chrIV:1381758-1381838 1.0000 80 chrII:753616-753696 1.0000 80 chrIV:15318544-15318624 1.0000 80 chrV:19570265-19570345 1.0000 80 chrX:1993388-1993468 1.0000 80 chrX:16690045-16690125 1.0000 80 chrIV:1464620-1464700 1.0000 80 chrIV:15604360-15604440 1.0000 80 chrX:8577984-8578064 1.0000 80 chrI:13220086-13220166 1.0000 80 chrV:15480664-15480744 1.0000 80 chrV:15516636-15516716 1.0000 80 chrIII:8653634-8653714 1.0000 80 chrIV:1637475-1637555 1.0000 80 chrV:20350552-20350632 1.0000 80 chrX:9074693-9074773 1.0000 80 chrX:17399985-17400065 1.0000 80 chrX:8639257-8639337 1.0000 80 chrV:18848731-18848811 1.0000 80 chrIV:10311278-10311358 1.0000 80 chrV:20277082-20277162 1.0000 80 chrIII:7384079-7384159 1.0000 80 chrV:19580955-19581035 1.0000 80 chrX:1590134-1590214 1.0000 80 chrV:17542503-17542583 1.0000 80 chrV:7506343-7506423 1.0000 80 chrX:8149099-8149179 1.0000 80 chrIV:11197007-11197087 1.0000 80 chrI:12283972-12284052 1.0000 80 chrI:11584146-11584226 1.0000 80 chrV:19177964-19178044 1.0000 80 chrIII:3189920-3190000 1.0000 80 chrIII:5782271-5782351 1.0000 80 chrI:1410049-1410129 1.0000 80 chrX:13444423-13444503 1.0000 80 chrIII:4484563-4484643 1.0000 80 chrII:2955806-2955886 1.0000 80 chrIV:1465596-1465676 1.0000 80 chrII:3260874-3260954 1.0000 80 chrX:15242901-15242981 1.0000 80 chrIV:15311184-15311264 1.0000 80 chrX:16208301-16208381 1.0000 80 chrIV:16036203-16036283 1.0000 80 chrX:12854886-12854966 1.0000 80 chrV:13509637-13509717 1.0000 80 chrIV:1380521-1380601 1.0000 80 chrI:14162805-14162885 1.0000 80 chrII:1700829-1700909 1.0000 80 chrV:17931951-17932031 1.0000 80 chrIII:3185375-3185455 1.0000 80 chrV:19577043-19577123 1.0000 80 chrIII:10960556-10960636 1.0000 80 chrX:8037485-8037565 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_tbp1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/tbp1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.264 C 0.235 G 0.233 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.264 C 0.235 G 0.233 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTSVGCCA MEME-1 width = 8 sites = 89 llr = 728 E-value = 2.6e-061 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTSVGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::51::a pos.-specific C 8:32:a8: probability G ::639::: matrix T 2a::::2: bits 2.1 * 1.9 * * * 1.7 * ** * 1.5 ** ** * Relative 1.3 ** **** Entropy 1.1 ** **** (11.8 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGCCA consensus CG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSVGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10960556-10960636 20 1.32e-05 CTCTACCCAG CTGAGCCA CTTGGAGAAC chrIII:4484563-4484643 7 1.32e-05 TACCTG CTGAGCCA TGATGGTCGC chrV:18848731-18848811 37 1.32e-05 CTCTTACCCA CTGAGCCA CTTGGTCATT chrV:19570265-19570345 31 1.32e-05 CTCTACCCGA CTGAGCCA CCGCGACCTA chrV:20217052-20217132 6 1.32e-05 CCCAC CTGAGCCA CTGCAACCCA chrV:20223880-20223960 51 1.32e-05 CTCTACCCAC CTGAGCCA CTTGAGCATT chrIII:2304314-2304394 11 1.32e-05 CTGTTACCAA CTGAGCCA AAAGTGCAAT chrII:1100334-1100414 50 1.32e-05 CTCTTACCAG CTGAGCCA CAGCTGCAAC chrIV:17150622-17150702 31 1.32e-05 TCCCTACCGA CTGAGCCA CGTGGGCGCT chrV:20119933-20120013 32 1.32e-05 CTCTTACCGA CTGAGCCA CCGCGGCACT chrV:17947434-17947514 22 1.32e-05 CGCTAACCGA CTGAGCCA CTTGCTCCCC chrIII:3106464-3106544 13 3.80e-05 TCTTGTAGGT CTCAGCCA TCCGTGTTAA chrI:5854842-5854922 17 3.80e-05 CACTAGACCA CTCAGCCA CAACTTTTCG chrII:12435614-12435694 23 4.98e-05 CACGCTTCCA CTGCGCCA CGCTGCTGCG chrIV:1390259-1390339 9 4.98e-05 TTGACCTT CTGCGCCA CAGCGTAACC chrV:18912669-18912749 10 4.98e-05 TCTTACCCA CTGCGCCA CCCCTTGCAC chrX:14211323-14211403 43 4.98e-05 CCATTTACCA CTGCGCCA CCCATCTTCG chrV:17826480-17826560 41 4.98e-05 GTGTTTACCA CTGCGCCA CCCATCTTCG chrIII:49811-49891 42 4.98e-05 CTCGTCCCAC CTGCGCCA TACAGCCGCT chrII:1478157-1478237 11 4.98e-05 CTCTTACCTA CTGCGCCA AAAGTACACT chrII:12668299-12668379 24 4.98e-05 CACTTACCTG CTGCGCCA CTCGGACGCG chrIII:1982996-1983076 10 4.98e-05 TTTTACCTA CTGCGCCA TACAGTGGCA chrIII:2031918-2031998 24 4.98e-05 ATGTAACCGA CTGCGCCA TTACATCAAT chrX:15242901-15242981 33 6.15e-05 ACACAAACCA CTCGGCCA CGAGGGACGT chrI:13220086-13220166 13 6.15e-05 gcactaacca ctcggcca tgcgggagac chrX:16690045-16690125 7 6.15e-05 TAACCA CTCGGCCA CCTGATCACG chrIII:6056341-6056421 25 6.15e-05 GCCTTAACCA CTCGGCCA CCTGATCACG chrX:1707450-1707530 2 6.15e-05 a ctcggcca tgcgagagac chrI:400647-400727 28 6.15e-05 gcactaacca ctcggcca tgcgggagag chrI:432148-432228 45 6.15e-05 gcactcccaa ctcggcca ccgaggacaa chrX:15319940-15320020 25 6.15e-05 gcaataacca ctcggcca tgcgggagag chrX:351572-351652 37 6.15e-05 acactaacca ctcggcca tgcgggagag chrI:12756316-12756396 6 6.15e-05 aacca ctcggcca tgcgggagag chrX:12304398-12304478 40 6.15e-05 GTCCTACCGC CTCGGCCA CACGTGCAGC chrII:4928545-4928625 5 6.15e-05 acca ctcggcca tgcgggatat chrIII:6661839-6661919 15 6.15e-05 gcactaacca ctcggcca tgcgggagag chrX:11162953-11163033 33 6.15e-05 CCTTAGACCG CTCGGCCA TCTCTCCACA chrX:1070770-1070850 6 6.15e-05 aacca ctcggcca tgcgggatat chrIII:2494897-2494977 21 6.15e-05 gcaataacca ctcggcca tgcgggagac chrV:8431455-8431535 23 6.15e-05 gcactaaccc ctcggcca tgcgggagac chrI:2272419-2272499 70 6.15e-05 AGCGAAAAAA CTCGGCCA CCA chrX:10299076-10299156 34 6.15e-05 gcactaacca ctcggcca tgcgggagag chrIV:16818703-16818783 37 6.15e-05 gcactaacca ctcggcca tgtaggatct chrIV:8412699-8412779 34 6.15e-05 gcactaacca ctcggcca tgtgggtgag chrIII:6663582-6663662 16 6.15e-05 gcaataacca ctcggcca tgcgggagag chrIV:16843723-16843803 35 6.15e-05 ggactaacca ctcggcca tgcaggacct chrII:2736342-2736422 1 6.15e-05 . CTCGGCCA TCTCTCCACC chrX:12854886-12854966 57 7.33e-05 GTCTTTCAAC CTCCGCCA TTCCTTTGAT chrII:3031447-3031527 30 7.33e-05 gcactaacca ctccgcca tgcaggagac chrX:16208301-16208381 31 8.83e-05 GCTCTACCAA CTGAGCTA TCGACGGCAT chrI:11584146-11584226 34 8.83e-05 GCTCTACCGA CTGAGCTA ACCGGGCGGC chrV:17542503-17542583 12 8.83e-05 GCTCTACCAA CTGAGCTA TCGACGGCAT chrX:1590134-1590214 5 8.83e-05 CCGA CTGAGCTA TGGCGGCTGG chrX:17399985-17400065 9 8.83e-05 gtaaccga ctgagcta tcgacgcccC chrIII:8653634-8653714 32 8.83e-05 GCTCTCCCAA CTGAGCTA TCGAGGCATG chrIV:15604360-15604440 9 8.83e-05 CTCTACCC CTGAGCTA TACCCCCGGA chrX:9025686-9025766 34 8.83e-05 CGCTCTACCA CTGAGCTA TAAGGGCGAT chrIV:9000824-9000904 37 8.83e-05 CGCTCTACCA CTGAGCTA TAAGGGCGAT chrX:17400600-17400680 12 8.83e-05 ttgtaaccga ctgagcta tcgacgcccC chrX:16208875-16208955 19 8.83e-05 GCTCTACCAA CTGAGCTA TCGACGGCAC chrV:17317924-17318004 24 8.83e-05 GCTCTACCAA CTGAGCTA TCGACGGCAT chrV:13027080-13027160 6 8.83e-05 ACCAA CTGAGCTA AGGAGGCCCT chrX:865435-865515 23 8.83e-05 GCTCTACCAA CTGAGCTA TCGACGGCAC chrIV:1380521-1380601 9 1.03e-04 CTACCCAG TTGAGCCA CTGCTCCCCA chrII:2722149-2722229 8 1.03e-04 TTACCAG TTGAGCCA AGCGCCACCC chrII:754350-754430 59 1.03e-04 ATCTAACCAG TTGAGCCA AAACTACACA chrII:1482563-1482643 35 1.03e-04 TTCTTACCAG TTGAGCCA TAAAGACAAA chrII:1092161-1092241 41 1.03e-04 CTCTTACCAG TTGAGCCA TAACTACAAT chrIV:1383463-1383543 4 1.03e-04 CAG TTGAGCCA CTGCGCCCCC chrII:1522113-1522193 33 1.03e-04 CTCTTACCAG TTGAGCCA TCGGCACCAA chrIII:1009942-1010022 35 1.73e-04 CGCTTACCGC CTGCGCTA CCGGTCATCT chrI:7571795-7571875 34 1.73e-04 TCGTTACCTG TTCAGCCA ACCTTGCGCG chrX:8639257-8639337 26 1.87e-04 GCGTTATCCA TTGCGCCA CGGCCACATT chrV:20350552-20350632 35 1.87e-04 GCGCTGCCTA TTGCGCCA CGGAAGCACG chrIV:1381758-1381838 35 1.87e-04 CTCTACCCAG TTGCGCCA CTGCGCCCAA chrV:20347821-20347901 34 1.87e-04 GCGCTGCCTA TTGCGCCA CGGAAGCACG chrIV:3681927-3682007 10 1.87e-04 GCGCTACCA TTGCGCCA AGCAGTCACG chrIII:5782271-5782351 21 2.57e-04 cattctacca ctgaacca ccgatgctTG chrV:17767916-17767996 27 2.57e-04 TTCTACCCAA CTGAACCA CCGCGAAAAT chrIII:2873256-2873336 69 2.57e-04 GTGTTATCCA CTAAGCCA AAAA chrI:13894866-13894946 36 2.57e-04 CGTTTACCGA CTGAACCA GGGAGGATGA chrX:1939423-1939503 30 2.97e-04 cgactaccga ctaggcca cagaggacGG chrIII:3107693-3107773 12 2.97e-04 GCGTTAGCCA CTAGGCCA AAAATCAACT chrII:1103070-1103150 13 3.29e-04 CTCTTACCGG TTGAGCTA AAAGTACACT chrII:2304716-2304796 32 3.29e-04 GCTTCTACCC CTCAACCA CCGGTTGATA chrX:11806615-11806695 51 3.55e-04 CGACCCCATT CTGCACCA TAAAAGGTAG chrIV:2800030-2800110 37 3.55e-04 AATATTTACT CTACGCCA TTAGGAACAG chrIII:2889824-2889904 17 3.55e-04 CTCTTAGCCA CTGCACCA CTTGGACGAC chrX:1089282-1089362 47 4.45e-04 gaacggctga ttcggcta aataggctag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSVGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10960556-10960636 1.3e-05 19_[+1]_53 chrIII:4484563-4484643 1.3e-05 6_[+1]_66 chrV:18848731-18848811 1.3e-05 36_[+1]_36 chrV:19570265-19570345 1.3e-05 30_[+1]_42 chrV:20217052-20217132 1.3e-05 5_[+1]_67 chrV:20223880-20223960 1.3e-05 50_[+1]_22 chrIII:2304314-2304394 1.3e-05 10_[+1]_62 chrII:1100334-1100414 1.3e-05 49_[+1]_23 chrIV:17150622-17150702 1.3e-05 30_[+1]_42 chrV:20119933-20120013 1.3e-05 31_[+1]_41 chrV:17947434-17947514 1.3e-05 21_[+1]_51 chrIII:3106464-3106544 3.8e-05 12_[+1]_60 chrI:5854842-5854922 3.8e-05 16_[+1]_56 chrII:12435614-12435694 5e-05 22_[+1]_50 chrIV:1390259-1390339 5e-05 8_[+1]_64 chrV:18912669-18912749 5e-05 9_[+1]_63 chrX:14211323-14211403 5e-05 42_[+1]_30 chrV:17826480-17826560 5e-05 40_[+1]_32 chrIII:49811-49891 5e-05 41_[+1]_31 chrII:1478157-1478237 5e-05 10_[+1]_62 chrII:12668299-12668379 5e-05 23_[+1]_49 chrIII:1982996-1983076 5e-05 9_[+1]_63 chrIII:2031918-2031998 5e-05 23_[+1]_49 chrX:15242901-15242981 6.1e-05 32_[+1]_40 chrI:13220086-13220166 6.1e-05 12_[+1]_60 chrX:16690045-16690125 6.1e-05 6_[+1]_66 chrIII:6056341-6056421 6.1e-05 24_[+1]_48 chrX:1707450-1707530 6.1e-05 1_[+1]_71 chrI:400647-400727 6.1e-05 27_[+1]_45 chrI:432148-432228 6.1e-05 44_[+1]_28 chrX:15319940-15320020 6.1e-05 24_[+1]_48 chrX:351572-351652 6.1e-05 36_[+1]_36 chrI:12756316-12756396 6.1e-05 5_[+1]_67 chrX:12304398-12304478 6.1e-05 39_[+1]_33 chrII:4928545-4928625 6.1e-05 4_[+1]_68 chrIII:6661839-6661919 6.1e-05 14_[+1]_58 chrX:11162953-11163033 6.1e-05 32_[+1]_40 chrX:1070770-1070850 6.1e-05 5_[+1]_67 chrIII:2494897-2494977 6.1e-05 20_[+1]_52 chrV:8431455-8431535 6.1e-05 22_[+1]_50 chrI:2272419-2272499 6.1e-05 69_[+1]_3 chrX:10299076-10299156 6.1e-05 33_[+1]_39 chrIV:16818703-16818783 6.1e-05 36_[+1]_36 chrIV:8412699-8412779 6.1e-05 33_[+1]_39 chrIII:6663582-6663662 6.1e-05 15_[+1]_57 chrIV:16843723-16843803 6.1e-05 34_[+1]_38 chrII:2736342-2736422 6.1e-05 [+1]_72 chrX:12854886-12854966 7.3e-05 56_[+1]_16 chrII:3031447-3031527 7.3e-05 29_[+1]_43 chrX:16208301-16208381 8.8e-05 30_[+1]_42 chrI:11584146-11584226 8.8e-05 33_[+1]_39 chrV:17542503-17542583 8.8e-05 11_[+1]_61 chrX:1590134-1590214 8.8e-05 4_[+1]_68 chrX:17399985-17400065 8.8e-05 8_[+1]_64 chrIII:8653634-8653714 8.8e-05 31_[+1]_41 chrIV:15604360-15604440 8.8e-05 8_[+1]_64 chrX:9025686-9025766 8.8e-05 33_[+1]_39 chrIV:9000824-9000904 8.8e-05 36_[+1]_36 chrX:17400600-17400680 8.8e-05 11_[+1]_61 chrX:16208875-16208955 8.8e-05 18_[+1]_54 chrV:17317924-17318004 8.8e-05 23_[+1]_49 chrV:13027080-13027160 8.8e-05 5_[+1]_67 chrX:865435-865515 8.8e-05 22_[+1]_50 chrIV:1380521-1380601 0.0001 8_[+1]_64 chrII:2722149-2722229 0.0001 7_[+1]_65 chrII:754350-754430 0.0001 58_[+1]_14 chrII:1482563-1482643 0.0001 34_[+1]_38 chrII:1092161-1092241 0.0001 40_[+1]_32 chrIV:1383463-1383543 0.0001 3_[+1]_69 chrII:1522113-1522193 0.0001 32_[+1]_40 chrIII:1009942-1010022 0.00017 34_[+1]_38 chrI:7571795-7571875 0.00017 33_[+1]_39 chrX:8639257-8639337 0.00019 25_[+1]_47 chrV:20350552-20350632 0.00019 34_[+1]_38 chrIV:1381758-1381838 0.00019 34_[+1]_38 chrV:20347821-20347901 0.00019 33_[+1]_39 chrIV:3681927-3682007 0.00019 9_[+1]_63 chrIII:5782271-5782351 0.00026 20_[+1]_52 chrV:17767916-17767996 0.00026 26_[+1]_46 chrIII:2873256-2873336 0.00026 68_[+1]_4 chrI:13894866-13894946 0.00026 35_[+1]_37 chrX:1939423-1939503 0.0003 29_[+1]_43 chrIII:3107693-3107773 0.0003 11_[+1]_61 chrII:1103070-1103150 0.00033 12_[+1]_60 chrII:2304716-2304796 0.00033 31_[+1]_41 chrX:11806615-11806695 0.00036 50_[+1]_22 chrIV:2800030-2800110 0.00036 36_[+1]_36 chrIII:2889824-2889904 0.00036 16_[+1]_56 chrX:1089282-1089362 0.00044 46_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSVGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTSVGCCA width=8 seqs=89 chrIII:10960556-10960636 ( 20) CTGAGCCA 1 chrIII:4484563-4484643 ( 7) CTGAGCCA 1 chrV:18848731-18848811 ( 37) CTGAGCCA 1 chrV:19570265-19570345 ( 31) CTGAGCCA 1 chrV:20217052-20217132 ( 6) CTGAGCCA 1 chrV:20223880-20223960 ( 51) CTGAGCCA 1 chrIII:2304314-2304394 ( 11) CTGAGCCA 1 chrII:1100334-1100414 ( 50) CTGAGCCA 1 chrIV:17150622-17150702 ( 31) CTGAGCCA 1 chrV:20119933-20120013 ( 32) CTGAGCCA 1 chrV:17947434-17947514 ( 22) CTGAGCCA 1 chrIII:3106464-3106544 ( 13) CTCAGCCA 1 chrI:5854842-5854922 ( 17) CTCAGCCA 1 chrII:12435614-12435694 ( 23) CTGCGCCA 1 chrIV:1390259-1390339 ( 9) CTGCGCCA 1 chrV:18912669-18912749 ( 10) CTGCGCCA 1 chrX:14211323-14211403 ( 43) CTGCGCCA 1 chrV:17826480-17826560 ( 41) CTGCGCCA 1 chrIII:49811-49891 ( 42) CTGCGCCA 1 chrII:1478157-1478237 ( 11) CTGCGCCA 1 chrII:12668299-12668379 ( 24) CTGCGCCA 1 chrIII:1982996-1983076 ( 10) CTGCGCCA 1 chrIII:2031918-2031998 ( 24) CTGCGCCA 1 chrX:15242901-15242981 ( 33) CTCGGCCA 1 chrI:13220086-13220166 ( 13) CTCGGCCA 1 chrX:16690045-16690125 ( 7) CTCGGCCA 1 chrIII:6056341-6056421 ( 25) CTCGGCCA 1 chrX:1707450-1707530 ( 2) CTCGGCCA 1 chrI:400647-400727 ( 28) CTCGGCCA 1 chrI:432148-432228 ( 45) CTCGGCCA 1 chrX:15319940-15320020 ( 25) CTCGGCCA 1 chrX:351572-351652 ( 37) CTCGGCCA 1 chrI:12756316-12756396 ( 6) CTCGGCCA 1 chrX:12304398-12304478 ( 40) CTCGGCCA 1 chrII:4928545-4928625 ( 5) CTCGGCCA 1 chrIII:6661839-6661919 ( 15) CTCGGCCA 1 chrX:11162953-11163033 ( 33) CTCGGCCA 1 chrX:1070770-1070850 ( 6) CTCGGCCA 1 chrIII:2494897-2494977 ( 21) CTCGGCCA 1 chrV:8431455-8431535 ( 23) CTCGGCCA 1 chrI:2272419-2272499 ( 70) CTCGGCCA 1 chrX:10299076-10299156 ( 34) CTCGGCCA 1 chrIV:16818703-16818783 ( 37) CTCGGCCA 1 chrIV:8412699-8412779 ( 34) CTCGGCCA 1 chrIII:6663582-6663662 ( 16) CTCGGCCA 1 chrIV:16843723-16843803 ( 35) CTCGGCCA 1 chrII:2736342-2736422 ( 1) CTCGGCCA 1 chrX:12854886-12854966 ( 57) CTCCGCCA 1 chrII:3031447-3031527 ( 30) CTCCGCCA 1 chrX:16208301-16208381 ( 31) CTGAGCTA 1 chrI:11584146-11584226 ( 34) CTGAGCTA 1 chrV:17542503-17542583 ( 12) CTGAGCTA 1 chrX:1590134-1590214 ( 5) CTGAGCTA 1 chrX:17399985-17400065 ( 9) CTGAGCTA 1 chrIII:8653634-8653714 ( 32) CTGAGCTA 1 chrIV:15604360-15604440 ( 9) CTGAGCTA 1 chrX:9025686-9025766 ( 34) CTGAGCTA 1 chrIV:9000824-9000904 ( 37) CTGAGCTA 1 chrX:17400600-17400680 ( 12) CTGAGCTA 1 chrX:16208875-16208955 ( 19) CTGAGCTA 1 chrV:17317924-17318004 ( 24) CTGAGCTA 1 chrV:13027080-13027160 ( 6) CTGAGCTA 1 chrX:865435-865515 ( 23) CTGAGCTA 1 chrIV:1380521-1380601 ( 9) TTGAGCCA 1 chrII:2722149-2722229 ( 8) TTGAGCCA 1 chrII:754350-754430 ( 59) TTGAGCCA 1 chrII:1482563-1482643 ( 35) TTGAGCCA 1 chrII:1092161-1092241 ( 41) TTGAGCCA 1 chrIV:1383463-1383543 ( 4) TTGAGCCA 1 chrII:1522113-1522193 ( 33) TTGAGCCA 1 chrIII:1009942-1010022 ( 35) CTGCGCTA 1 chrI:7571795-7571875 ( 34) TTCAGCCA 1 chrX:8639257-8639337 ( 26) TTGCGCCA 1 chrV:20350552-20350632 ( 35) TTGCGCCA 1 chrIV:1381758-1381838 ( 35) TTGCGCCA 1 chrV:20347821-20347901 ( 34) TTGCGCCA 1 chrIV:3681927-3682007 ( 10) TTGCGCCA 1 chrIII:5782271-5782351 ( 21) CTGAACCA 1 chrV:17767916-17767996 ( 27) CTGAACCA 1 chrIII:2873256-2873336 ( 69) CTAAGCCA 1 chrI:13894866-13894946 ( 36) CTGAACCA 1 chrX:1939423-1939503 ( 30) CTAGGCCA 1 chrIII:3107693-3107773 ( 12) CTAGGCCA 1 chrII:1103070-1103150 ( 13) TTGAGCTA 1 chrII:2304716-2304796 ( 32) CTCAACCA 1 chrX:11806615-11806695 ( 51) CTGCACCA 1 chrIV:2800030-2800110 ( 37) CTACGCCA 1 chrIII:2889824-2889904 ( 17) CTGCACCA 1 chrX:1089282-1089362 ( 47) TTCGGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSVGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.71255 E= 2.6e-061 -1312 182 -1312 -67 -1312 -1312 -1312 190 -256 57 138 -1312 80 1 38 -1312 -197 -1312 200 -1312 -1312 209 -1312 -1312 -1312 179 -1312 -49 192 -1312 -1312 -1312 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSVGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 2.6e-061 0.000000 0.831461 0.000000 0.168539 0.000000 0.000000 0.000000 1.000000 0.044944 0.348315 0.606742 0.000000 0.460674 0.235955 0.303371 0.000000 0.067416 0.000000 0.932584 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.808989 0.000000 0.191011 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSVGCCA MEME-1 regular expression -------------------------------------------------------------------------------- CT[GC][AGC]GCCA -------------------------------------------------------------------------------- Time 6.85 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCYSAG MEME-2 width = 8 sites = 96 llr = 761 E-value = 2.7e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCYSAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1::::a2 pos.-specific C :::845:: probability G :9a:23:8 matrix T a::242:: bits 2.1 * 1.9 * * * 1.7 *** * 1.5 **** ** Relative 1.3 **** ** Entropy 1.1 **** ** (11.4 bits) 0.8 **** ** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCCAG consensus TG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCYSAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:3188728-3188808 45 1.16e-05 ATTGCATTTT TGGCCCAG TGGCTAACAC chrIV:8964203-8964283 46 1.16e-05 CTTAcctgtg tggcccag tggttagtgc chrV:17931951-17932031 44 2.49e-05 AATTGTCGAG TGGCTCAG TGGGTTAGAG chrV:19177964-19178044 42 2.49e-05 AATGCACCAG TGGCTCAG CCGGGTAGAG chrV:20277082-20277162 27 2.49e-05 TTGGCAAAAG TGGCTCAG TCGGGAAGAG chrV:15516636-15516716 61 2.49e-05 TGAACACGGA TGGCTCAG GCCCAGAAAG chrII:753616-753696 73 2.49e-05 TGTGTAGTTT TGGCTCAG chrV:18849294-18849374 52 2.49e-05 GGTGTCCAAG TGGCTCAG TAGGTTAGAG chrII:2722149-2722229 50 2.49e-05 GCGGGGCGCA TGGCTCAG CCGGTAAGCG chrV:19398551-19398631 42 2.49e-05 AGCGAGCCAG TGGCTCAG TCGGGTAGGG chrV:19667877-19667957 33 2.49e-05 TTTGCAACAG TGGCTCAG TCGGATAGAG chrIII:2290708-2290788 31 2.49e-05 GTGGCACTTT TGGCTCAG TCGGTAACAG chrIII:11473007-11473087 47 2.49e-05 TTGTCCCGAG TGGCTCAG TCGGTAGTGG chrI:12610389-12610469 40 2.49e-05 TATGAAcaaa tggctcag tgcaattttt chrII:12668299-12668379 56 2.49e-05 GTTGCGCGCA TGGCTCAG CCGGTAAGCG chrV:19581964-19582044 45 2.49e-05 TGTGCCTCGG TGGCTCAG TTGGGTAGAG chrII:755115-755195 33 2.49e-05 GACGTAGTTT TGGCTCAG CTGGGTAGAG chrIV:1407231-1407311 40 2.49e-05 TGGTGTGTGG TGGCTCAG CCGGGAAGGG chrV:19579671-19579751 42 2.49e-05 TGTGCCGTGG TGGCTCAG TAGGGTAGCG chrI:14162805-14162885 50 3.64e-05 TGTGATCAGG TGGCCGAG TGGTTAAGGC chrX:13444423-13444503 37 3.64e-05 GTAGCACGGA TGGCCGAG TGGTCTAAGG chrIII:302677-302757 40 3.64e-05 gttttcggca tggccgag tggttagtgc chrI:5298190-5298270 65 3.64e-05 gtctcccgca tggccgag tggttatt chrI:4755062-4755142 46 3.64e-05 gtcttccgca tggccgag tggttagtgc chrIII:1354672-1354752 51 3.64e-05 gtctcccgca tggccgag tggttagtac chrV:706586-706666 52 3.64e-05 ctctcccgca tggccgag tggttaatgc chrIII:58890-58970 47 3.64e-05 CTGTGctgca tggccgag tggttagtgc chrIV:16731418-16731498 51 3.64e-05 ctctcccgca tggccgag tggttagtcc chrI:13694908-13694988 72 3.64e-05 gtctctcgca tggccgag t chrX:2801809-2801889 59 3.64e-05 gtctcccgca tggccgag tggttagtgc chrIV:16482319-16482399 27 3.64e-05 atgtcctcgg tggccgag ttgggagtgc chrV:16474827-16474907 67 3.64e-05 ctctcctgca tggccgag tggtta chrIII:2065093-2065173 53 3.64e-05 ctctcccgca tggccgag tagttagtgc chrV:1561332-1561412 52 3.64e-05 ttctcacgca tggccgag tggttagtgc chrV:6711221-6711301 52 3.64e-05 atgtcctcgg tggccgag ttgggagtgc chrII:13658579-13658659 39 3.64e-05 ctctcccgca tggccgag tggttagtgc chrX:13973250-13973330 51 3.64e-05 tactcccgca tggccgag tggttagtgc chrIV:13140959-13141039 42 3.64e-05 gtcacccgca tggccgag tggttagtgc chrIV:11231531-11231611 33 4.95e-05 AGTCTCGGCG TGGCTGAG TGGTCTAGTG chrIII:3101055-3101135 57 4.95e-05 ctaacaggga tggctgag acccataaga chrIII:3186281-3186361 69 4.95e-05 ATAACACGGA TGGCTGAG ACAc chrII:2955806-2955886 41 6.10e-05 ACTGTCCAAC TGGCGCAG GGGTATATTT chrX:8577984-8578064 39 6.10e-05 CGAAGATGGG TGGCGCAG TGGTAAACAG chrV:18912669-18912749 66 6.10e-05 ACTTGCAGCA TGGCGCAG TAGGTAA chrV:6917434-6917514 39 6.10e-05 CAAGCCCCAT TGGCGCAG TCGGTTAGCG chrIII:1981613-1981693 36 6.10e-05 CGTGCGCGCA TGGCGCAG TAGGTAAGAG chrI:12142880-12142960 38 6.10e-05 CGCAGCAGCG TGGCGCAG TGGAAGCGTG chrIII:1982996-1983076 45 6.10e-05 AGAGCGCGCG TGGCGCAG TGGGTAAGAG chrIII:2889824-2889904 61 6.10e-05 CTGGAGCACA TGGCGCAG CGGCTAAGAG chrX:8037485-8037565 29 7.43e-05 ATCGGTCGGA TGGCCTAG AGGTAAGGCG chrIII:3185375-3185455 69 7.43e-05 ATCGGATTTT TGGCCTAG TGGT chrIII:3189920-3190000 56 7.43e-05 GTTGCATTTT TGGCCTAG TGGCTAACAC chrIII:1048092-1048172 29 7.43e-05 ttaacacccg tggcctag tggatagtgg chrIII:3108961-3109041 53 7.43e-05 AGTTGATTTT TGGCCTAG TGGCTAACAG chrIII:3190799-3190879 71 7.43e-05 GTTGGATTTT TGGCCTAG TG chrIV:4949893-4949973 39 7.43e-05 ctctcccgca tggcctag tggttagtgc chrIII:3191888-3191968 73 1.01e-04 TTAACAGTGT TGGCGGAG chrV:4310553-4310633 64 1.55e-04 tcagcatcgg tggttcag tggtagaat chrIV:1465596-1465676 43 1.70e-04 TATGGGGGTG TGGCTCAA CTGGGTAGAG chrIV:1637475-1637555 40 1.70e-04 tttgcccgca tggctcaa tgcgggtccc chrIV:1464620-1464700 68 1.70e-04 TAGGTCGCAG TGGCTCAA CTGGG chrII:1478716-1478796 47 1.70e-04 GGTGTCCACT TGGCTCAA CTGGTAAGAG chrIV:1394234-1394314 45 1.70e-04 TGGGTTGCAG TGGCTCAA CTGGTTAGAG chrIV:1470530-1470610 42 1.70e-04 AGGGGTGCGG TGGCTCAA CTGGATAGAG chrIII:8541182-8541262 36 1.84e-04 gtctcctgca tggtcgag tggttagtgc chrIV:16260417-16260497 59 1.84e-04 atcgcttcgg tggtcgag tggtgaacgc chrX:3949922-3950002 40 1.84e-04 atcgcttcgg tggtcgag tggcgaacgc chrV:15106372-15106452 40 1.84e-04 atcgcttcgg tggtcgag tggtgaacgc chrX:15751387-15751467 32 2.25e-04 TGTCTTAGCA TGGCCGAA TGGTCTAGTG chrIV:15170364-15170444 39 2.25e-04 gcctcacgca tggccgaa tggttagtgc chrI:12283972-12284052 42 2.55e-04 GTggcaggga tagctcag tcggtagttg chrV:15480664-15480744 37 2.55e-04 ACGCCGTCGA TAGCTCAG TTGGTAGAGC chrIII:2129527-2129607 52 2.55e-04 ATTACACTTA TAGCTCAG CCGGTAACAG chrX:13717160-13717240 42 2.55e-04 GGCGCCCGGT TAGCTCAG TCGGTAGAGC chrIII:11478916-11478996 48 2.55e-04 CTCACACCGA TAGCTCAG TCGGTAGGGC chrIV:6562177-6562257 32 2.55e-04 CATGGGGGTA TAGCTCAG TAGTAGAGCG chrV:16219126-16219206 40 2.55e-04 TCAGCCCGTA TAGCTCAG TGGCAGAGCG chrIII:12192660-12192740 69 2.55e-04 Ggggggcaga tagctcag tcgg chrIV:16036203-16036283 32 2.68e-04 CGGGAGCCGG tggtgcag tggaaaatgg chrIII:2137636-2137716 67 2.81e-04 ATTGCACCGG TGGCGCAA CTGGTT chrV:13509637-13509717 63 3.09e-04 CACGGCCGAA TGGTCTAG TGGTATGATT chrV:7506343-7506423 59 3.56e-04 CGTGGCCTTG TGGCCTAA TGGATAAGGC chrV:20217052-20217132 58 3.56e-04 TTGTTTTACA TGGTTTAG AGTTAAAATT chrX:1089796-1089876 49 3.56e-04 TGTGGCCGCG TGGCCTAA TGGATAAGGC chrX:1698614-1698694 67 3.56e-04 TGTGGCCGCG TGGCCTAA TGGATA chrIII:3099540-3099620 41 4.27e-04 gttGAGTTTT TAGCCTAG TGGCTAATGC chrIV:11497426-11497506 41 4.44e-04 GGCGCGTGCA TAGCTTAG TGGTTAAGGG chrX:1993388-1993468 67 4.72e-04 AATGGGCCTG TGGTGTAG TGGTTA chrIII:3355902-3355982 30 4.72e-04 ATTAATTTTG TGGTGTAG TGGGCTAAGG chrII:13605511-13605591 61 4.72e-04 ctcgcccttt tggtgtag tggttaagcg chrII:11824811-11824891 70 4.72e-04 ctcgcccttt tggtgtag tgg chrX:1830625-1830705 35 4.72e-04 CGTGGCCCTG TGGTGTAG TGGTTAACAC chrX:16300004-16300084 66 4.72e-04 AGCGGTCTCG TGGTGTAG TGGTTAT chrII:6798196-6798276 26 5.02e-04 atgtatatag tggcgtaa cgaagtccga chrX:13697663-13697743 72 5.19e-04 TCGTACTCTC TGGTTCAA A chrII:1477464-1477544 42 5.19e-04 AAAATACTTT TGGTTCAA CAGGTAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCYSAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:3188728-3188808 1.2e-05 44_[+2]_28 chrIV:8964203-8964283 1.2e-05 45_[+2]_27 chrV:17931951-17932031 2.5e-05 43_[+2]_29 chrV:19177964-19178044 2.5e-05 41_[+2]_31 chrV:20277082-20277162 2.5e-05 26_[+2]_46 chrV:15516636-15516716 2.5e-05 60_[+2]_12 chrII:753616-753696 2.5e-05 72_[+2] chrV:18849294-18849374 2.5e-05 51_[+2]_21 chrII:2722149-2722229 2.5e-05 49_[+2]_23 chrV:19398551-19398631 2.5e-05 41_[+2]_31 chrV:19667877-19667957 2.5e-05 32_[+2]_40 chrIII:2290708-2290788 2.5e-05 30_[+2]_42 chrIII:11473007-11473087 2.5e-05 46_[+2]_26 chrI:12610389-12610469 2.5e-05 39_[+2]_33 chrII:12668299-12668379 2.5e-05 55_[+2]_17 chrV:19581964-19582044 2.5e-05 44_[+2]_28 chrII:755115-755195 2.5e-05 32_[+2]_40 chrIV:1407231-1407311 2.5e-05 39_[+2]_33 chrV:19579671-19579751 2.5e-05 41_[+2]_31 chrI:14162805-14162885 3.6e-05 49_[+2]_23 chrX:13444423-13444503 3.6e-05 36_[+2]_36 chrIII:302677-302757 3.6e-05 39_[+2]_33 chrI:5298190-5298270 3.6e-05 64_[+2]_8 chrI:4755062-4755142 3.6e-05 45_[+2]_27 chrIII:1354672-1354752 3.6e-05 50_[+2]_22 chrV:706586-706666 3.6e-05 51_[+2]_21 chrIII:58890-58970 3.6e-05 46_[+2]_26 chrIV:16731418-16731498 3.6e-05 50_[+2]_22 chrI:13694908-13694988 3.6e-05 71_[+2]_1 chrX:2801809-2801889 3.6e-05 58_[+2]_14 chrIV:16482319-16482399 3.6e-05 26_[+2]_46 chrV:16474827-16474907 3.6e-05 66_[+2]_6 chrIII:2065093-2065173 3.6e-05 52_[+2]_20 chrV:1561332-1561412 3.6e-05 51_[+2]_21 chrV:6711221-6711301 3.6e-05 51_[+2]_21 chrII:13658579-13658659 3.6e-05 38_[+2]_34 chrX:13973250-13973330 3.6e-05 50_[+2]_22 chrIV:13140959-13141039 3.6e-05 41_[+2]_31 chrIV:11231531-11231611 5e-05 32_[+2]_40 chrIII:3101055-3101135 5e-05 56_[+2]_16 chrIII:3186281-3186361 5e-05 68_[+2]_4 chrII:2955806-2955886 6.1e-05 40_[+2]_32 chrX:8577984-8578064 6.1e-05 38_[+2]_34 chrV:18912669-18912749 6.1e-05 65_[+2]_7 chrV:6917434-6917514 6.1e-05 38_[+2]_34 chrIII:1981613-1981693 6.1e-05 35_[+2]_37 chrI:12142880-12142960 6.1e-05 37_[+2]_35 chrIII:1982996-1983076 6.1e-05 44_[+2]_28 chrIII:2889824-2889904 6.1e-05 60_[+2]_12 chrX:8037485-8037565 7.4e-05 28_[+2]_44 chrIII:3185375-3185455 7.4e-05 68_[+2]_4 chrIII:3189920-3190000 7.4e-05 55_[+2]_17 chrIII:1048092-1048172 7.4e-05 28_[+2]_44 chrIII:3108961-3109041 7.4e-05 52_[+2]_20 chrIII:3190799-3190879 7.4e-05 70_[+2]_2 chrIV:4949893-4949973 7.4e-05 38_[+2]_34 chrIII:3191888-3191968 0.0001 72_[+2] chrV:4310553-4310633 0.00016 63_[+2]_9 chrIV:1465596-1465676 0.00017 42_[+2]_30 chrIV:1637475-1637555 0.00017 39_[+2]_33 chrIV:1464620-1464700 0.00017 67_[+2]_5 chrII:1478716-1478796 0.00017 46_[+2]_26 chrIV:1394234-1394314 0.00017 44_[+2]_28 chrIV:1470530-1470610 0.00017 41_[+2]_31 chrIII:8541182-8541262 0.00018 35_[+2]_37 chrIV:16260417-16260497 0.00018 58_[+2]_14 chrX:3949922-3950002 0.00018 39_[+2]_33 chrV:15106372-15106452 0.00018 39_[+2]_33 chrX:15751387-15751467 0.00022 31_[+2]_41 chrIV:15170364-15170444 0.00022 38_[+2]_34 chrI:12283972-12284052 0.00025 41_[+2]_31 chrV:15480664-15480744 0.00025 36_[+2]_36 chrIII:2129527-2129607 0.00025 51_[+2]_21 chrX:13717160-13717240 0.00025 41_[+2]_31 chrIII:11478916-11478996 0.00025 47_[+2]_25 chrIV:6562177-6562257 0.00025 31_[+2]_41 chrV:16219126-16219206 0.00025 39_[+2]_33 chrIII:12192660-12192740 0.00025 68_[+2]_4 chrIV:16036203-16036283 0.00027 31_[+2]_41 chrIII:2137636-2137716 0.00028 66_[+2]_6 chrV:13509637-13509717 0.00031 62_[+2]_10 chrV:7506343-7506423 0.00036 58_[+2]_14 chrV:20217052-20217132 0.00036 57_[+2]_15 chrX:1089796-1089876 0.00036 48_[+2]_24 chrX:1698614-1698694 0.00036 66_[+2]_6 chrIII:3099540-3099620 0.00043 40_[+2]_32 chrIV:11497426-11497506 0.00044 40_[+2]_32 chrX:1993388-1993468 0.00047 66_[+2]_6 chrIII:3355902-3355982 0.00047 29_[+2]_43 chrII:13605511-13605591 0.00047 60_[+2]_12 chrII:11824811-11824891 0.00047 69_[+2]_3 chrX:1830625-1830705 0.00047 34_[+2]_38 chrX:16300004-16300084 0.00047 65_[+2]_7 chrII:6798196-6798276 0.0005 25_[+2]_47 chrX:13697663-13697743 0.00052 71_[+2]_1 chrII:1477464-1477544 0.00052 41_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCYSAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCYSAG width=8 seqs=96 chrIII:3188728-3188808 ( 45) TGGCCCAG 1 chrIV:8964203-8964283 ( 46) TGGCCCAG 1 chrV:17931951-17932031 ( 44) TGGCTCAG 1 chrV:19177964-19178044 ( 42) TGGCTCAG 1 chrV:20277082-20277162 ( 27) TGGCTCAG 1 chrV:15516636-15516716 ( 61) TGGCTCAG 1 chrII:753616-753696 ( 73) TGGCTCAG 1 chrV:18849294-18849374 ( 52) TGGCTCAG 1 chrII:2722149-2722229 ( 50) TGGCTCAG 1 chrV:19398551-19398631 ( 42) TGGCTCAG 1 chrV:19667877-19667957 ( 33) TGGCTCAG 1 chrIII:2290708-2290788 ( 31) TGGCTCAG 1 chrIII:11473007-11473087 ( 47) TGGCTCAG 1 chrI:12610389-12610469 ( 40) TGGCTCAG 1 chrII:12668299-12668379 ( 56) TGGCTCAG 1 chrV:19581964-19582044 ( 45) TGGCTCAG 1 chrII:755115-755195 ( 33) TGGCTCAG 1 chrIV:1407231-1407311 ( 40) TGGCTCAG 1 chrV:19579671-19579751 ( 42) TGGCTCAG 1 chrI:14162805-14162885 ( 50) TGGCCGAG 1 chrX:13444423-13444503 ( 37) TGGCCGAG 1 chrIII:302677-302757 ( 40) TGGCCGAG 1 chrI:5298190-5298270 ( 65) TGGCCGAG 1 chrI:4755062-4755142 ( 46) TGGCCGAG 1 chrIII:1354672-1354752 ( 51) TGGCCGAG 1 chrV:706586-706666 ( 52) TGGCCGAG 1 chrIII:58890-58970 ( 47) TGGCCGAG 1 chrIV:16731418-16731498 ( 51) TGGCCGAG 1 chrI:13694908-13694988 ( 72) TGGCCGAG 1 chrX:2801809-2801889 ( 59) TGGCCGAG 1 chrIV:16482319-16482399 ( 27) TGGCCGAG 1 chrV:16474827-16474907 ( 67) TGGCCGAG 1 chrIII:2065093-2065173 ( 53) TGGCCGAG 1 chrV:1561332-1561412 ( 52) TGGCCGAG 1 chrV:6711221-6711301 ( 52) TGGCCGAG 1 chrII:13658579-13658659 ( 39) TGGCCGAG 1 chrX:13973250-13973330 ( 51) TGGCCGAG 1 chrIV:13140959-13141039 ( 42) TGGCCGAG 1 chrIV:11231531-11231611 ( 33) TGGCTGAG 1 chrIII:3101055-3101135 ( 57) TGGCTGAG 1 chrIII:3186281-3186361 ( 69) TGGCTGAG 1 chrII:2955806-2955886 ( 41) TGGCGCAG 1 chrX:8577984-8578064 ( 39) TGGCGCAG 1 chrV:18912669-18912749 ( 66) TGGCGCAG 1 chrV:6917434-6917514 ( 39) TGGCGCAG 1 chrIII:1981613-1981693 ( 36) TGGCGCAG 1 chrI:12142880-12142960 ( 38) TGGCGCAG 1 chrIII:1982996-1983076 ( 45) TGGCGCAG 1 chrIII:2889824-2889904 ( 61) TGGCGCAG 1 chrX:8037485-8037565 ( 29) TGGCCTAG 1 chrIII:3185375-3185455 ( 69) TGGCCTAG 1 chrIII:3189920-3190000 ( 56) TGGCCTAG 1 chrIII:1048092-1048172 ( 29) TGGCCTAG 1 chrIII:3108961-3109041 ( 53) TGGCCTAG 1 chrIII:3190799-3190879 ( 71) TGGCCTAG 1 chrIV:4949893-4949973 ( 39) TGGCCTAG 1 chrIII:3191888-3191968 ( 73) TGGCGGAG 1 chrV:4310553-4310633 ( 64) TGGTTCAG 1 chrIV:1465596-1465676 ( 43) TGGCTCAA 1 chrIV:1637475-1637555 ( 40) TGGCTCAA 1 chrIV:1464620-1464700 ( 68) TGGCTCAA 1 chrII:1478716-1478796 ( 47) TGGCTCAA 1 chrIV:1394234-1394314 ( 45) TGGCTCAA 1 chrIV:1470530-1470610 ( 42) TGGCTCAA 1 chrIII:8541182-8541262 ( 36) TGGTCGAG 1 chrIV:16260417-16260497 ( 59) TGGTCGAG 1 chrX:3949922-3950002 ( 40) TGGTCGAG 1 chrV:15106372-15106452 ( 40) TGGTCGAG 1 chrX:15751387-15751467 ( 32) TGGCCGAA 1 chrIV:15170364-15170444 ( 39) TGGCCGAA 1 chrI:12283972-12284052 ( 42) TAGCTCAG 1 chrV:15480664-15480744 ( 37) TAGCTCAG 1 chrIII:2129527-2129607 ( 52) TAGCTCAG 1 chrX:13717160-13717240 ( 42) TAGCTCAG 1 chrIII:11478916-11478996 ( 48) TAGCTCAG 1 chrIV:6562177-6562257 ( 32) TAGCTCAG 1 chrV:16219126-16219206 ( 40) TAGCTCAG 1 chrIII:12192660-12192740 ( 69) TAGCTCAG 1 chrIV:16036203-16036283 ( 32) TGGTGCAG 1 chrIII:2137636-2137716 ( 67) TGGCGCAA 1 chrV:13509637-13509717 ( 63) TGGTCTAG 1 chrV:7506343-7506423 ( 59) TGGCCTAA 1 chrV:20217052-20217132 ( 58) TGGTTTAG 1 chrX:1089796-1089876 ( 49) TGGCCTAA 1 chrX:1698614-1698694 ( 67) TGGCCTAA 1 chrIII:3099540-3099620 ( 41) TAGCCTAG 1 chrIV:11497426-11497506 ( 41) TAGCTTAG 1 chrX:1993388-1993468 ( 67) TGGTGTAG 1 chrIII:3355902-3355982 ( 30) TGGTGTAG 1 chrII:13605511-13605591 ( 61) TGGTGTAG 1 chrII:11824811-11824891 ( 70) TGGTGTAG 1 chrX:1830625-1830705 ( 35) TGGTGTAG 1 chrX:16300004-16300084 ( 66) TGGTGTAG 1 chrII:6798196-6798276 ( 26) TGGCGTAA 1 chrX:13697663-13697743 ( 72) TGGTTCAA 1 chrII:1477464-1477544 ( 42) TGGTTCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCYSAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 2.7e-060 -1323 -1323 -1323 190 -134 -1323 194 -1323 -1323 -1323 210 -1323 -1323 183 -1323 -69 -1323 79 -31 60 -1323 103 38 -29 192 -1323 -1323 -1323 -76 -1323 186 -1323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCYSAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 2.7e-060 0.000000 0.000000 0.000000 1.000000 0.104167 0.000000 0.895833 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.406250 0.187500 0.406250 0.000000 0.479167 0.302083 0.218750 1.000000 0.000000 0.000000 0.000000 0.156250 0.000000 0.843750 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCYSAG MEME-2 regular expression -------------------------------------------------------------------------------- TGGC[CT][CGT]AG -------------------------------------------------------------------------------- Time 10.45 secs. ******************************************************************************** ******************************************************************************** MOTIF RAAAWTTT MEME-3 width = 8 sites = 137 llr = 893 E-value = 1.5e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAAWTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 49993::: pos.-specific C 2:11:1:1 probability G 41::1:11 matrix T ::::5999 bits 2.1 1.9 1.7 * 1.5 *** * Relative 1.3 *** *** Entropy 1.1 *** *** (9.4 bits) 0.8 *** *** 0.6 *** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATTTT consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAWTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:302677-302757 69 4.72e-05 tatgattgca gaaatttt ggta chrIII:2129527-2129607 30 4.72e-05 attttttttc aaaatttt GAAAATTACA chrV:20217052-20217132 70 4.72e-05 GTTTAGAGTT AAAATTTT ACG chrI:4755062-4755142 4 4.72e-05 cag aaaatttt cttccctaca chrIII:1354672-1354752 8 4.72e-05 ctttcca gaaatttt ccttccctac chrX:1707450-1707530 44 4.72e-05 tgtagggaag aaaatttt ctggagggag chrV:706586-706666 9 4.72e-05 tccctcca aaaatttt ccttccctac chrIII:2290708-2290788 9 4.72e-05 GTTTTTTA GAAATTTT AAAAGTGGCA chrIV:16731418-16731498 8 4.72e-05 ctgtcca gaaatttt ccttccctgc chrII:1482563-1482643 50 4.72e-05 CCATAAAGAC AAAATTTT AAAAATGAAA chrII:1478157-1478237 72 4.72e-05 GCCGAACTTC GAAATTTT T chrII:3031447-3031527 71 4.72e-05 tttagggaag aaaatttt ct chrV:13507245-13507325 50 4.72e-05 CGTCAATCGG GAAATTTT CATGAAAAAT chrIII:8541182-8541262 65 4.72e-05 aatgactgca gaaatttt ggtagttg chrIV:17150622-17150702 59 4.72e-05 CAATTTCGTT AAAATTTT CAACGTACCG chrIII:2137636-2137716 44 4.72e-05 TCTTTTTTTC GAAATTTT CGAAAATTGC chrX:1070770-1070850 48 4.72e-05 tgtagggaag aaaatttt ctggagagga chrIV:4949893-4949973 68 4.72e-05 tatgtctgcg gaaatttt ggaag chrV:16474827-16474907 24 4.72e-05 ttcctgtcca gaaatttt tcttccctgc chrIII:3186281-3186361 34 4.72e-05 TTCCAGCAAA AAAATTTT AACCTATGGC chrII:1522113-1522193 63 4.72e-05 AAAAATTAAA AAAATTTT CGGAATTTTT chrII:13658579-13658659 68 4.72e-05 tatgtctgcg gaaatttt ggtag chrV:19579671-19579751 19 4.72e-05 CTTTTTTTTC GAAATTTT GAAAATGTGC chrIV:13140959-13141039 71 4.72e-05 tatgactgca gaaatttt gg chrV:13509637-13509717 27 9.36e-05 TATTTTTCAT GAAAATTT CCCGAACTAC chrIV:1381758-1381838 58 9.36e-05 CCCAAAATCT GAAAATTT CAAAATTATC chrV:17767916-17767996 39 9.36e-05 GAACCACCGC GAAAATTT GCGTAGAGCT chrI:400647-400727 70 9.36e-05 tgtagggaag gaaaattt ctg chrIII:3105369-3105449 60 9.36e-05 CGATATTTCA AAAAATTT AGTTTTTGGC chrII:4928545-4928625 47 9.36e-05 tgtagggaag aaaaattt ctggacagga chrIII:3190799-3190879 17 9.36e-05 GTGTTTTTCA AAAAATTT CCGTTAATTT chrIV:2738623-2738703 26 9.36e-05 CCCATACCGA AAAAATTT GGAAAATGTG chrIII:2290066-2290146 61 9.36e-05 TTGTTTTGTG GAAAATTT AAAAATTGCA chrV:19667877-19667957 11 1.16e-04 AGCATTTTCC CAAATTTT TCAATTTGCA chrV:16219126-16219206 2 1.16e-04 T CAAATTTT TTATGCCTAA chrV:6917434-6917514 1 1.16e-04 . CAAATTTT ATTTCACGGA chrIII:2304314-2304394 32 1.16e-04 GTGCAATTTC CAAATTTT TCAAAAAATA chrIV:1383463-1383543 21 1.16e-04 ACTGCGCCCC CAAATTTT AAAATTATCA chrX:8623536-8623616 6 1.16e-04 AACAG CAAATTTT TTAGGATGAA chrV:19577043-19577123 27 1.79e-04 CATTTTTTTT GAAAGTTT GAAAATGTGT chrX:8149099-8149179 37 1.79e-04 TTATTTGATT GAAAGTTT GCCTGCATCA chrX:9325909-9325989 35 1.79e-04 GTGGCTACAT AAAAGTTT ACTTCAGCCG chrIV:17127274-17127354 66 1.79e-04 GTGGCTACAT AAAAGTTT GGCACTG chrII:1102383-1102463 50 1.79e-04 GCCAAAACTC CAAAATTT ATTTTTCTCC chrII:6168873-6168953 56 1.79e-04 TAAAGTGGCT AAAAGTTT TGCCATTCAC chrIII:6661839-6661919 57 1.79e-04 tgcagggaag gaaagttt ctggacagga chrX:3949922-3950002 73 1.79e-04 cctcttgagc aaaagttt chrX:14136991-14137071 21 1.79e-04 TACGCAGGCC GAAAGTTT GGGTCCCCAG chrIII:7597945-7598025 57 1.79e-04 GTGGCTACAT AAAAGTTT GGCACTGCAG chrX:10299076-10299156 4 1.79e-04 aac caaaattt ctgcagtcat chrIV:16818703-16818783 7 1.79e-04 aactac caaaattt ctgctgtcaa chrIV:8412699-8412779 4 1.79e-04 tac caaaattt ccgcagacat chrIV:16843723-16843803 5 1.79e-04 ctac caaaattt ctgcagtcaa chrX:15242901-15242981 67 1.98e-04 TTCGGACCTC CAAAGTTT TCAAAA chrII:1103070-1103150 37 1.98e-04 CACTTATTTT CAAAGTTT TCCAACAGCT chrV:17931951-17932031 32 2.39e-04 CGCACATTTT GAAATTGT CGAGTGGCTC chrII:12435614-12435694 42 2.39e-04 GCTGCTGCGG AAAATTGT GAACAAACTG chrIII:5782271-5782351 63 3.22e-04 ATATCCATGA AAACTTTT CATATACTTT chrII:753616-753696 16 3.22e-04 GATTCAGAGC GAAATTTG GCTCTGAACG chrX:8826177-8826257 67 3.22e-04 TTTCAGTGCA AAACTTTT ATGTAG chrV:19985005-19985085 67 3.22e-04 TTTCAGTGCA AAACTTTT GTGCAG chrIV:16555709-16555789 48 3.22e-04 CTGCAGTGCC AAACTTTT ATGTAGCCAC chrV:17947434-17947514 60 3.22e-04 AAATAATTTT GAACTTTT TTCAAGTTTT chrV:19245833-19245913 36 3.63e-04 cgtgaccact gaaaatgt gacacctacc chrX:865435-865515 67 3.63e-04 ATGTGTCAAT AAAAATGT TTGTTG chrIV:16482319-16482399 13 3.63e-04 cattgagttg aaaaatgt cctcggtggc chrV:19581964-19582044 30 3.63e-04 TTCGAAATTT GAAAATGT GCCTCGGTGG chrV:6711221-6711301 9 3.63e-04 tgaccacc gaaaatgt gacatccgcc chrIII:2031918-2031998 10 3.63e-04 GTTGGAGGC AAAAATGT AACCGACTGC chrIII:3189920-3190000 4 4.04e-04 CTT GAAATTTC CGTTAATTTG chrI:13694908-13694988 29 4.04e-04 acttcctcca gaaatttc ctttccctac chrX:2801809-2801889 15 4.04e-04 actccctcca gaaatttc tcttccctac chrV:1561332-1561412 10 4.04e-04 ctccctcca gaaatttc tcttccctac chrV:8431455-8431535 66 4.04e-04 atagggaagg gaaatttc tggaggg chrIV:15311184-15311264 33 5.69e-04 GGCAGCCGAC AAACATTT ATTTAAGAGT chrV:19580955-19581035 10 5.69e-04 gccaccgag gacatttt tcaactcaat chrV:20277082-20277162 12 5.69e-04 GGAGAGATCT GAAAATTG GCAAAAGTGG chrIV:10311278-10311358 53 5.69e-04 TTCTAGTGTT GACATTTT TGTCATTCTC chrIV:15318544-15318624 33 5.69e-04 GGCAACCGAC AAACATTT ATTTAAGAGT chrII:1481826-1481906 39 5.69e-04 CGACGGGGTA AAAATCTT TTTATTTTTT chrIV:1390259-1390339 59 5.69e-04 ACCATTCTCT AAAAATTG ATAGCAATCG chrIV:6562177-6562257 4 5.69e-04 ACC AACATTTT TTCTGCCGAT chrII:1477464-1477544 21 5.69e-04 AGAAAAATTA AAAAATTG AAAAAAATAC chrIII:12192660-12192740 36 5.69e-04 AACCTTTGCT GAAAATTG GTGGTTTTCT chrII:1478716-1478796 30 5.69e-04 AATCTGAAAA AAAAATTG GTGTCCACTT chrIII:3188728-3188808 31 5.69e-04 TCGATTTTTG AAAAATTG CATTTTTGGC chrIII:3101055-3101135 22 5.69e-04 gatttttcaa aaaaattg aacttttggc chrX:8818598-8818678 65 5.69e-04 TTTGAAACAT AAAATCTT CTTTTGAA chrIV:1470530-1470610 19 5.69e-04 ACGAGAAAAA AAAAATTG AAAAAAGGGG chrIV:1407231-1407311 13 5.69e-04 ACTTTCTCAA AAAATCTT TTGATAAATT chrIV:15170364-15170444 68 5.69e-04 tatgattgca gaaatctt ggtag chrI:5298190-5298270 22 6.71e-04 actccctcca gaaaattc ccttctctac chrIV:2656873-2656953 53 6.71e-04 AACGTACGTT CAAATTGT TCGGGAGGCC chrX:1629916-1629996 73 6.71e-04 ATATAGTGAA CAAATTGT chrIII:2494897-2494977 63 6.71e-04 tgtagggaag ggaatttt ctggagggag chrIII:3107693-3107773 65 6.71e-04 TAAAATGACG GGAATTTT GTGGGAAG chrIII:3108320-3108400 52 6.71e-04 caaattgacg ggaatttt gtggaaaatc chrX:5485038-5485118 19 6.71e-04 AGATCGCTGG AAAAATTC CGAAACAAAA chrII:2736342-2736422 46 6.71e-04 AAGGGCGTAC AGAATTTT ATGACTCTTG chrIII:6056341-6056421 43 7.53e-04 CCTGATCACG GAAAACTT TCTATTTATT chrV:19398551-19398631 15 7.53e-04 GCAAAATTCC GAAAACTT CAATTGAAAA chrI:432148-432228 58 7.53e-04 ggccaccgag gacaattt tcaactcaat chrI:12610389-12610469 58 7.53e-04 tgcaattttt gaaaactt ccaatctcaa chrIII:1048092-1048172 5 7.53e-04 tttc aacaattt ttagaattaa chrX:13444423-13444503 1 7.92e-04 . CAACTTTT TTGTCATTTT chrX:1972932-1973012 64 7.92e-04 ctcTGTTGAA CAACTTTT TTGTAGCCT chrI:5854842-5854922 25 7.92e-04 CACTCAGCCA CAACTTTT CGTCTTTTTA chrIII:3191888-3191968 27 7.92e-04 ACACCCATAT CAACTTTT TTGAAAAAGT chrV:17542503-17542583 56 8.88e-04 AAGGGCAATG AAAAGTGT GATAATTGTC chrX:6867087-6867167 49 8.88e-04 CATTTACAAA AAAAGTGT CATCGAATGA chrV:17317924-17318004 68 8.88e-04 AAGGGCAATG AAAAGTGT GATGA chrIV:8123685-8123765 7 8.88e-04 ccctcc agaaattt accttcctta chrIII:2065093-2065173 10 8.88e-04 actccctcc agaaattt accttcctta chrX:13973250-13973330 8 8.88e-04 tccctcc agaaattt accttcttta chrIV:1464620-1464700 38 9.56e-04 ACCGTTTCCC ATAATTTT CAATTTTCAA chrV:19177964-19178044 16 1.11e-03 CAAAAAAGCG CACATTTT GGAAAAAAAA chrX:8639257-8639337 38 1.11e-03 GCGCCACGGC CACATTTT AGTTTGACCC chrIII:3099540-3099620 27 1.11e-03 caattttttc aaaagttG AGTTTTTAGC chrIII:3108961-3109041 40 1.11e-03 GATTTTTCAA AAAAGTTG ATTTTTGGCC chrI:12606014-12606094 15 1.11e-03 GTAGGAGGCA AAACGTTT ATTCTTAAGG chrX:16300004-16300084 45 1.11e-03 CTAAATGGAC CACATTTT TCCAGCGGTC chrIV:16577337-16577417 63 1.15e-03 TACTTTTTGG AAAATATT CCGAATTAAA chrX:351572-351652 8 1.15e-03 aacgagc aaaatatt cacagccata chrIV:2800030-2800110 25 1.15e-03 ACTAGTGGAA AAAATATT TACTCTACGC chrI:1410049-1410129 40 1.27e-03 agtaaggaat gtaaattt ctgaagggag chrIV:2747555-2747635 21 1.27e-03 CCACTACACC AAAAGTTC AAACTTCGAT chrX:15319940-15320020 66 1.27e-03 agtaaggaag gtaaattt ctggagg chrI:12756316-12756396 47 1.27e-03 agtaaggaag gtaaattt ctggacagga chrV:13027080-13027160 32 1.27e-03 CTGAAAAGGA CAAAATTC CGTCTCTACC chrIII:6663582-6663662 57 1.27e-03 agtaaggaag gtaaattt ctggagggag chrII:3260874-3260954 2 1.43e-03 C CAAAACTt cagttttccg chrIII:11478916-11478996 20 1.43e-03 GAAGTTCGGG GACAGTTT TCCGGCTCCC chrX:14211323-14211403 70 1.43e-03 GATTTAAATC GAAATTAT ATC chrV:17826480-17826560 68 1.43e-03 GATTTAAATT GAAATTAT GTCGT chrX:12304398-12304478 6 1.43e-03 GATCA AAAAGCTT TGATCCAGAG chrII:13605511-13605591 15 1.62e-03 ACTTACGATA AAAAATAT ATATATAGAC chrIII:3355902-3355982 15 1.67e-03 TAGTTTTGCG CAAATATT AATTTTGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAWTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:302677-302757 4.7e-05 68_[+3]_4 chrIII:2129527-2129607 4.7e-05 29_[+3]_43 chrV:20217052-20217132 4.7e-05 69_[+3]_3 chrI:4755062-4755142 4.7e-05 3_[+3]_69 chrIII:1354672-1354752 4.7e-05 7_[+3]_65 chrX:1707450-1707530 4.7e-05 43_[+3]_29 chrV:706586-706666 4.7e-05 8_[+3]_64 chrIII:2290708-2290788 4.7e-05 8_[+3]_64 chrIV:16731418-16731498 4.7e-05 7_[+3]_65 chrII:1482563-1482643 4.7e-05 49_[+3]_23 chrII:1478157-1478237 4.7e-05 71_[+3]_1 chrII:3031447-3031527 4.7e-05 70_[+3]_2 chrV:13507245-13507325 4.7e-05 49_[+3]_23 chrIII:8541182-8541262 4.7e-05 64_[+3]_8 chrIV:17150622-17150702 4.7e-05 58_[+3]_14 chrIII:2137636-2137716 4.7e-05 43_[+3]_29 chrX:1070770-1070850 4.7e-05 47_[+3]_25 chrIV:4949893-4949973 4.7e-05 67_[+3]_5 chrV:16474827-16474907 4.7e-05 23_[+3]_49 chrIII:3186281-3186361 4.7e-05 33_[+3]_39 chrII:1522113-1522193 4.7e-05 62_[+3]_10 chrII:13658579-13658659 4.7e-05 67_[+3]_5 chrV:19579671-19579751 4.7e-05 18_[+3]_54 chrIV:13140959-13141039 4.7e-05 70_[+3]_2 chrV:13509637-13509717 9.4e-05 26_[+3]_46 chrIV:1381758-1381838 9.4e-05 57_[+3]_15 chrV:17767916-17767996 9.4e-05 38_[+3]_34 chrI:400647-400727 9.4e-05 69_[+3]_3 chrIII:3105369-3105449 9.4e-05 59_[+3]_13 chrII:4928545-4928625 9.4e-05 46_[+3]_26 chrIII:3190799-3190879 9.4e-05 16_[+3]_56 chrIV:2738623-2738703 9.4e-05 25_[+3]_47 chrIII:2290066-2290146 9.4e-05 60_[+3]_12 chrV:19667877-19667957 0.00012 10_[+3]_62 chrV:16219126-16219206 0.00012 1_[+3]_71 chrV:6917434-6917514 0.00012 [+3]_72 chrIII:2304314-2304394 0.00012 31_[+3]_41 chrIV:1383463-1383543 0.00012 20_[+3]_52 chrX:8623536-8623616 0.00012 5_[+3]_67 chrV:19577043-19577123 0.00018 26_[+3]_46 chrX:8149099-8149179 0.00018 36_[+3]_36 chrX:9325909-9325989 0.00018 34_[+3]_38 chrIV:17127274-17127354 0.00018 65_[+3]_7 chrII:1102383-1102463 0.00018 49_[+3]_23 chrII:6168873-6168953 0.00018 55_[+3]_17 chrIII:6661839-6661919 0.00018 56_[+3]_16 chrX:3949922-3950002 0.00018 72_[+3] chrX:14136991-14137071 0.00018 20_[+3]_52 chrIII:7597945-7598025 0.00018 56_[+3]_16 chrX:10299076-10299156 0.00018 3_[+3]_69 chrIV:16818703-16818783 0.00018 6_[+3]_66 chrIV:8412699-8412779 0.00018 3_[+3]_69 chrIV:16843723-16843803 0.00018 4_[+3]_68 chrX:15242901-15242981 0.0002 66_[+3]_6 chrII:1103070-1103150 0.0002 36_[+3]_36 chrV:17931951-17932031 0.00024 31_[+3]_41 chrII:12435614-12435694 0.00024 41_[+3]_31 chrIII:5782271-5782351 0.00032 62_[+3]_10 chrII:753616-753696 0.00032 15_[+3]_57 chrX:8826177-8826257 0.00032 66_[+3]_6 chrV:19985005-19985085 0.00032 66_[+3]_6 chrIV:16555709-16555789 0.00032 47_[+3]_25 chrV:17947434-17947514 0.00032 59_[+3]_13 chrV:19245833-19245913 0.00036 35_[+3]_37 chrX:865435-865515 0.00036 66_[+3]_6 chrIV:16482319-16482399 0.00036 12_[+3]_60 chrV:19581964-19582044 0.00036 29_[+3]_43 chrV:6711221-6711301 0.00036 8_[+3]_64 chrIII:2031918-2031998 0.00036 9_[+3]_63 chrIII:3189920-3190000 0.0004 3_[+3]_69 chrI:13694908-13694988 0.0004 28_[+3]_44 chrX:2801809-2801889 0.0004 14_[+3]_58 chrV:1561332-1561412 0.0004 9_[+3]_63 chrV:8431455-8431535 0.0004 65_[+3]_7 chrIV:15311184-15311264 0.00057 32_[+3]_40 chrV:19580955-19581035 0.00057 9_[+3]_63 chrV:20277082-20277162 0.00057 11_[+3]_61 chrIV:10311278-10311358 0.00057 52_[+3]_20 chrIV:15318544-15318624 0.00057 32_[+3]_40 chrII:1481826-1481906 0.00057 38_[+3]_34 chrIV:1390259-1390339 0.00057 58_[+3]_14 chrIV:6562177-6562257 0.00057 3_[+3]_69 chrII:1477464-1477544 0.00057 20_[+3]_52 chrIII:12192660-12192740 0.00057 35_[+3]_37 chrII:1478716-1478796 0.00057 29_[+3]_43 chrIII:3188728-3188808 0.00057 30_[+3]_42 chrIII:3101055-3101135 0.00057 21_[+3]_51 chrX:8818598-8818678 0.00057 64_[+3]_8 chrIV:1470530-1470610 0.00057 18_[+3]_54 chrIV:1407231-1407311 0.00057 12_[+3]_60 chrIV:15170364-15170444 0.00057 67_[+3]_5 chrI:5298190-5298270 0.00067 21_[+3]_51 chrIV:2656873-2656953 0.00067 52_[+3]_20 chrX:1629916-1629996 0.00067 72_[+3] chrIII:2494897-2494977 0.00067 62_[+3]_10 chrIII:3107693-3107773 0.00067 64_[+3]_8 chrIII:3108320-3108400 0.00067 51_[+3]_21 chrX:5485038-5485118 0.00067 18_[+3]_54 chrII:2736342-2736422 0.00067 45_[+3]_27 chrIII:6056341-6056421 0.00075 42_[+3]_30 chrV:19398551-19398631 0.00075 14_[+3]_58 chrI:432148-432228 0.00075 57_[+3]_15 chrI:12610389-12610469 0.00075 57_[+3]_15 chrIII:1048092-1048172 0.00075 4_[+3]_68 chrX:13444423-13444503 0.00079 [+3]_72 chrX:1972932-1973012 0.00079 63_[+3]_9 chrI:5854842-5854922 0.00079 24_[+3]_48 chrIII:3191888-3191968 0.00079 26_[+3]_46 chrV:17542503-17542583 0.00089 55_[+3]_17 chrX:6867087-6867167 0.00089 48_[+3]_24 chrV:17317924-17318004 0.00089 67_[+3]_5 chrIV:8123685-8123765 0.00089 6_[+3]_66 chrIII:2065093-2065173 0.00089 9_[+3]_63 chrX:13973250-13973330 0.00089 7_[+3]_65 chrIV:1464620-1464700 0.00096 37_[+3]_35 chrV:19177964-19178044 0.0011 15_[+3]_57 chrX:8639257-8639337 0.0011 37_[+3]_35 chrIII:3099540-3099620 0.0011 26_[+3]_46 chrIII:3108961-3109041 0.0011 39_[+3]_33 chrI:12606014-12606094 0.0011 14_[+3]_58 chrX:16300004-16300084 0.0011 44_[+3]_28 chrIV:16577337-16577417 0.0012 62_[+3]_10 chrX:351572-351652 0.0012 7_[+3]_65 chrIV:2800030-2800110 0.0012 24_[+3]_48 chrI:1410049-1410129 0.0013 39_[+3]_33 chrIV:2747555-2747635 0.0013 20_[+3]_52 chrX:15319940-15320020 0.0013 65_[+3]_7 chrI:12756316-12756396 0.0013 46_[+3]_26 chrV:13027080-13027160 0.0013 31_[+3]_41 chrIII:6663582-6663662 0.0013 56_[+3]_16 chrII:3260874-3260954 0.0014 1_[+3]_71 chrIII:11478916-11478996 0.0014 19_[+3]_53 chrX:14211323-14211403 0.0014 69_[+3]_3 chrV:17826480-17826560 0.0014 67_[+3]_5 chrX:12304398-12304478 0.0014 5_[+3]_67 chrII:13605511-13605591 0.0016 14_[+3]_58 chrIII:3355902-3355982 0.0017 14_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAWTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAAWTTT width=8 seqs=137 chrIII:302677-302757 ( 69) GAAATTTT 1 chrIII:2129527-2129607 ( 30) AAAATTTT 1 chrV:20217052-20217132 ( 70) AAAATTTT 1 chrI:4755062-4755142 ( 4) AAAATTTT 1 chrIII:1354672-1354752 ( 8) GAAATTTT 1 chrX:1707450-1707530 ( 44) AAAATTTT 1 chrV:706586-706666 ( 9) AAAATTTT 1 chrIII:2290708-2290788 ( 9) GAAATTTT 1 chrIV:16731418-16731498 ( 8) GAAATTTT 1 chrII:1482563-1482643 ( 50) AAAATTTT 1 chrII:1478157-1478237 ( 72) GAAATTTT 1 chrII:3031447-3031527 ( 71) AAAATTTT 1 chrV:13507245-13507325 ( 50) GAAATTTT 1 chrIII:8541182-8541262 ( 65) GAAATTTT 1 chrIV:17150622-17150702 ( 59) AAAATTTT 1 chrIII:2137636-2137716 ( 44) GAAATTTT 1 chrX:1070770-1070850 ( 48) AAAATTTT 1 chrIV:4949893-4949973 ( 68) GAAATTTT 1 chrV:16474827-16474907 ( 24) GAAATTTT 1 chrIII:3186281-3186361 ( 34) AAAATTTT 1 chrII:1522113-1522193 ( 63) AAAATTTT 1 chrII:13658579-13658659 ( 68) GAAATTTT 1 chrV:19579671-19579751 ( 19) GAAATTTT 1 chrIV:13140959-13141039 ( 71) GAAATTTT 1 chrV:13509637-13509717 ( 27) GAAAATTT 1 chrIV:1381758-1381838 ( 58) GAAAATTT 1 chrV:17767916-17767996 ( 39) GAAAATTT 1 chrI:400647-400727 ( 70) GAAAATTT 1 chrIII:3105369-3105449 ( 60) AAAAATTT 1 chrII:4928545-4928625 ( 47) AAAAATTT 1 chrIII:3190799-3190879 ( 17) AAAAATTT 1 chrIV:2738623-2738703 ( 26) AAAAATTT 1 chrIII:2290066-2290146 ( 61) GAAAATTT 1 chrV:19667877-19667957 ( 11) CAAATTTT 1 chrV:16219126-16219206 ( 2) CAAATTTT 1 chrV:6917434-6917514 ( 1) CAAATTTT 1 chrIII:2304314-2304394 ( 32) CAAATTTT 1 chrIV:1383463-1383543 ( 21) CAAATTTT 1 chrX:8623536-8623616 ( 6) CAAATTTT 1 chrV:19577043-19577123 ( 27) GAAAGTTT 1 chrX:8149099-8149179 ( 37) GAAAGTTT 1 chrX:9325909-9325989 ( 35) AAAAGTTT 1 chrIV:17127274-17127354 ( 66) AAAAGTTT 1 chrII:1102383-1102463 ( 50) CAAAATTT 1 chrII:6168873-6168953 ( 56) AAAAGTTT 1 chrIII:6661839-6661919 ( 57) GAAAGTTT 1 chrX:3949922-3950002 ( 73) AAAAGTTT 1 chrX:14136991-14137071 ( 21) GAAAGTTT 1 chrIII:7597945-7598025 ( 57) AAAAGTTT 1 chrX:10299076-10299156 ( 4) CAAAATTT 1 chrIV:16818703-16818783 ( 7) CAAAATTT 1 chrIV:8412699-8412779 ( 4) CAAAATTT 1 chrIV:16843723-16843803 ( 5) CAAAATTT 1 chrX:15242901-15242981 ( 67) CAAAGTTT 1 chrII:1103070-1103150 ( 37) CAAAGTTT 1 chrV:17931951-17932031 ( 32) GAAATTGT 1 chrII:12435614-12435694 ( 42) AAAATTGT 1 chrIII:5782271-5782351 ( 63) AAACTTTT 1 chrII:753616-753696 ( 16) GAAATTTG 1 chrX:8826177-8826257 ( 67) AAACTTTT 1 chrV:19985005-19985085 ( 67) AAACTTTT 1 chrIV:16555709-16555789 ( 48) AAACTTTT 1 chrV:17947434-17947514 ( 60) GAACTTTT 1 chrV:19245833-19245913 ( 36) GAAAATGT 1 chrX:865435-865515 ( 67) AAAAATGT 1 chrIV:16482319-16482399 ( 13) AAAAATGT 1 chrV:19581964-19582044 ( 30) GAAAATGT 1 chrV:6711221-6711301 ( 9) GAAAATGT 1 chrIII:2031918-2031998 ( 10) AAAAATGT 1 chrIII:3189920-3190000 ( 4) GAAATTTC 1 chrI:13694908-13694988 ( 29) GAAATTTC 1 chrX:2801809-2801889 ( 15) GAAATTTC 1 chrV:1561332-1561412 ( 10) GAAATTTC 1 chrV:8431455-8431535 ( 66) GAAATTTC 1 chrIV:15311184-15311264 ( 33) AAACATTT 1 chrV:19580955-19581035 ( 10) GACATTTT 1 chrV:20277082-20277162 ( 12) GAAAATTG 1 chrIV:10311278-10311358 ( 53) GACATTTT 1 chrIV:15318544-15318624 ( 33) AAACATTT 1 chrII:1481826-1481906 ( 39) AAAATCTT 1 chrIV:1390259-1390339 ( 59) AAAAATTG 1 chrIV:6562177-6562257 ( 4) AACATTTT 1 chrII:1477464-1477544 ( 21) AAAAATTG 1 chrIII:12192660-12192740 ( 36) GAAAATTG 1 chrII:1478716-1478796 ( 30) AAAAATTG 1 chrIII:3188728-3188808 ( 31) AAAAATTG 1 chrIII:3101055-3101135 ( 22) AAAAATTG 1 chrX:8818598-8818678 ( 65) AAAATCTT 1 chrIV:1470530-1470610 ( 19) AAAAATTG 1 chrIV:1407231-1407311 ( 13) AAAATCTT 1 chrIV:15170364-15170444 ( 68) GAAATCTT 1 chrI:5298190-5298270 ( 22) GAAAATTC 1 chrIV:2656873-2656953 ( 53) CAAATTGT 1 chrX:1629916-1629996 ( 73) CAAATTGT 1 chrIII:2494897-2494977 ( 63) GGAATTTT 1 chrIII:3107693-3107773 ( 65) GGAATTTT 1 chrIII:3108320-3108400 ( 52) GGAATTTT 1 chrX:5485038-5485118 ( 19) AAAAATTC 1 chrII:2736342-2736422 ( 46) AGAATTTT 1 chrIII:6056341-6056421 ( 43) GAAAACTT 1 chrV:19398551-19398631 ( 15) GAAAACTT 1 chrI:432148-432228 ( 58) GACAATTT 1 chrI:12610389-12610469 ( 58) GAAAACTT 1 chrIII:1048092-1048172 ( 5) AACAATTT 1 chrX:13444423-13444503 ( 1) CAACTTTT 1 chrX:1972932-1973012 ( 64) CAACTTTT 1 chrI:5854842-5854922 ( 25) CAACTTTT 1 chrIII:3191888-3191968 ( 27) CAACTTTT 1 chrV:17542503-17542583 ( 56) AAAAGTGT 1 chrX:6867087-6867167 ( 49) AAAAGTGT 1 chrV:17317924-17318004 ( 68) AAAAGTGT 1 chrIV:8123685-8123765 ( 7) AGAAATTT 1 chrIII:2065093-2065173 ( 10) AGAAATTT 1 chrX:13973250-13973330 ( 8) AGAAATTT 1 chrIV:1464620-1464700 ( 38) ATAATTTT 1 chrV:19177964-19178044 ( 16) CACATTTT 1 chrX:8639257-8639337 ( 38) CACATTTT 1 chrIII:3099540-3099620 ( 27) AAAAGTTG 1 chrIII:3108961-3109041 ( 40) AAAAGTTG 1 chrI:12606014-12606094 ( 15) AAACGTTT 1 chrX:16300004-16300084 ( 45) CACATTTT 1 chrIV:16577337-16577417 ( 63) AAAATATT 1 chrX:351572-351652 ( 8) AAAATATT 1 chrIV:2800030-2800110 ( 25) AAAATATT 1 chrI:1410049-1410129 ( 40) GTAAATTT 1 chrIV:2747555-2747635 ( 21) AAAAGTTC 1 chrX:15319940-15320020 ( 66) GTAAATTT 1 chrI:12756316-12756396 ( 47) GTAAATTT 1 chrV:13027080-13027160 ( 32) CAAAATTC 1 chrIII:6663582-6663662 ( 57) GTAAATTT 1 chrII:3260874-3260954 ( 2) CAAAACTT 1 chrIII:11478916-11478996 ( 20) GACAGTTT 1 chrX:14211323-14211403 ( 70) GAAATTAT 1 chrV:17826480-17826560 ( 68) GAAATTAT 1 chrX:12304398-12304478 ( 6) AAAAGCTT 1 chrII:13605511-13605591 ( 15) AAAAATAT 1 chrIII:3355902-3355982 ( 15) CAAATATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAWTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.85292 E= 1.5e-035 70 -36 73 -1374 179 -1374 -219 -288 182 -184 -1374 -1374 179 -142 -1374 -1374 38 -1374 -67 93 -318 -184 -1374 175 -359 -1374 -129 172 -1374 -184 -154 167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAWTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 137 E= 1.5e-035 0.430657 0.182482 0.386861 0.000000 0.912409 0.000000 0.051095 0.036496 0.934307 0.065693 0.000000 0.000000 0.912409 0.087591 0.000000 0.000000 0.343066 0.000000 0.145985 0.510949 0.029197 0.065693 0.000000 0.905109 0.021898 0.000000 0.094891 0.883212 0.000000 0.065693 0.080292 0.854015 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAWTTT MEME-3 regular expression -------------------------------------------------------------------------------- [AG]AAA[TA]TTT -------------------------------------------------------------------------------- Time 15.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTTAGWG MEME-4 width = 8 sites = 36 llr = 318 E-value = 2.5e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTAGWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::12a:4: pos.-specific C ::::::1: probability G aa2::a:a matrix T ::78::4: bits 2.1 ** * * 1.9 ** ** * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ** ** * Entropy 1.1 ** *** * (12.7 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTTAGTG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTAGWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:17931951-17932031 54 2.97e-05 TGGCTCAGTG GGTTAGAG AGATGACTCC chrIII:302677-302757 49 2.97e-05 atggccgagt ggttagtg cgtatgattg chrV:18849294-18849374 62 2.97e-05 TGGCTCAGTA GGTTAGAG GGATGGTTGA chrI:4755062-4755142 55 2.97e-05 atggccgagt ggttagtg cgtatgattg chrIII:58890-58970 56 2.97e-05 atggccgagt ggttagtg cgtatgactg chrI:7718901-7718981 64 2.97e-05 AAGCGCCACA GGTTAGTG GCAGCTTAA chrIII:8541182-8541262 45 2.97e-05 atggtcgagt ggttagtg cgaatgactg chrIV:8123685-8123765 59 2.97e-05 atgaccgagt ggttagtg cgtatgactg chrIV:1394234-1394314 55 2.97e-05 TGGCTCAACT GGTTAGAG GTTGCGTTGG chrIV:4949893-4949973 48 2.97e-05 atggcctagt ggttagtg cgtatgtctg chrX:2801809-2801889 68 2.97e-05 atggccgagt ggttagtg cgtat chrV:1561332-1561412 61 2.97e-05 atggccgagt ggttagtg cgtatgtctg chrII:13658579-13658659 48 2.97e-05 atggccgagt ggttagtg cgtatgtctg chrIV:15170364-15170444 48 2.97e-05 atggccgaat ggttagtg cgtatgattg chrX:13973250-13973330 60 2.97e-05 atggccgagt ggttagtg cgtatgactg chrIV:8964203-8964283 55 2.97e-05 gtggcccagt ggttagtg cgtatgactg chrIV:13140959-13141039 51 2.97e-05 atggccgagt ggttagtg cgtatgactg chrX:6867087-6867167 73 4.29e-05 ATGACCGAGT GGTTAGCG chrV:6917434-6917514 49 4.29e-05 TGGCGCAGTC GGTTAGCG CGTGGTACTT chrV:19577043-19577123 60 6.87e-05 AGGCTCAACT GGGTAGAG GCTTGGCTAT chrIV:1465596-1465676 53 6.87e-05 TGGCTCAACT GGGTAGAG ACTAGGCTGT chrV:19177964-19178044 52 6.87e-05 TGGCTCAGCC GGGTAGAG AGATGGCTAT chrV:19581964-19582044 55 6.87e-05 TGGCTCAGTT GGGTAGAG GTTTAGCAGT chrII:755115-755195 43 6.87e-05 TGGCTCAGCT GGGTAGAG GCTTGGCTGG chrII:1477464-1477544 52 9.80e-05 TGGTTCAACA GGTAAGAG GGTTGACTGG chrII:1478716-1478796 57 9.80e-05 TGGCTCAACT GGTAAGAG GGATGACTGG chrIII:1981613-1981693 46 9.80e-05 TGGCGCAGTA GGTAAGAG GGATGCCTTG chrIII:1982996-1983076 55 9.80e-05 TGGCGCAGTG GGTAAGAG GGATGCCTAA chrV:19667877-19667957 43 1.27e-04 TGGCTCAGTC GGATAGAG GTTTCATTGG chrIII:1048092-1048172 38 1.27e-04 gtggcctagt ggatagtg gggacggttg chrIV:1470530-1470610 52 1.27e-04 TGGCTCAACT GGATAGAG GTTAGGCCAA chrV:19579671-19579751 52 1.39e-04 TGGCTCAGTA GGGTAGCG AATTAGCTAT chrII:2722149-2722229 60 1.52e-04 TGGCTCAGCC GGTAAGCG CCTCACCTTC chrII:12668299-12668379 66 1.52e-04 TGGCTCAGCC GGTAAGCG GCTGAGC chrV:20277082-20277162 37 1.77e-04 TGGCTCAGTC GGGAAGAG GGATACTTTT chrV:19985005-19985085 4 2.19e-04 CTA GGAAAGTG TGATTATTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTAGWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:17931951-17932031 3e-05 53_[+4]_19 chrIII:302677-302757 3e-05 48_[+4]_24 chrV:18849294-18849374 3e-05 61_[+4]_11 chrI:4755062-4755142 3e-05 54_[+4]_18 chrIII:58890-58970 3e-05 55_[+4]_17 chrI:7718901-7718981 3e-05 63_[+4]_9 chrIII:8541182-8541262 3e-05 44_[+4]_28 chrIV:8123685-8123765 3e-05 58_[+4]_14 chrIV:1394234-1394314 3e-05 54_[+4]_18 chrIV:4949893-4949973 3e-05 47_[+4]_25 chrX:2801809-2801889 3e-05 67_[+4]_5 chrV:1561332-1561412 3e-05 60_[+4]_12 chrII:13658579-13658659 3e-05 47_[+4]_25 chrIV:15170364-15170444 3e-05 47_[+4]_25 chrX:13973250-13973330 3e-05 59_[+4]_13 chrIV:8964203-8964283 3e-05 54_[+4]_18 chrIV:13140959-13141039 3e-05 50_[+4]_22 chrX:6867087-6867167 4.3e-05 72_[+4] chrV:6917434-6917514 4.3e-05 48_[+4]_24 chrV:19577043-19577123 6.9e-05 59_[+4]_13 chrIV:1465596-1465676 6.9e-05 52_[+4]_20 chrV:19177964-19178044 6.9e-05 51_[+4]_21 chrV:19581964-19582044 6.9e-05 54_[+4]_18 chrII:755115-755195 6.9e-05 42_[+4]_30 chrII:1477464-1477544 9.8e-05 51_[+4]_21 chrII:1478716-1478796 9.8e-05 56_[+4]_16 chrIII:1981613-1981693 9.8e-05 45_[+4]_27 chrIII:1982996-1983076 9.8e-05 54_[+4]_18 chrV:19667877-19667957 0.00013 42_[+4]_30 chrIII:1048092-1048172 0.00013 37_[+4]_35 chrIV:1470530-1470610 0.00013 51_[+4]_21 chrV:19579671-19579751 0.00014 51_[+4]_21 chrII:2722149-2722229 0.00015 59_[+4]_13 chrII:12668299-12668379 0.00015 65_[+4]_7 chrV:20277082-20277162 0.00018 36_[+4]_36 chrV:19985005-19985085 0.00022 3_[+4]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTAGWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTAGWG width=8 seqs=36 chrV:17931951-17932031 ( 54) GGTTAGAG 1 chrIII:302677-302757 ( 49) GGTTAGTG 1 chrV:18849294-18849374 ( 62) GGTTAGAG 1 chrI:4755062-4755142 ( 55) GGTTAGTG 1 chrIII:58890-58970 ( 56) GGTTAGTG 1 chrI:7718901-7718981 ( 64) GGTTAGTG 1 chrIII:8541182-8541262 ( 45) GGTTAGTG 1 chrIV:8123685-8123765 ( 59) GGTTAGTG 1 chrIV:1394234-1394314 ( 55) GGTTAGAG 1 chrIV:4949893-4949973 ( 48) GGTTAGTG 1 chrX:2801809-2801889 ( 68) GGTTAGTG 1 chrV:1561332-1561412 ( 61) GGTTAGTG 1 chrII:13658579-13658659 ( 48) GGTTAGTG 1 chrIV:15170364-15170444 ( 48) GGTTAGTG 1 chrX:13973250-13973330 ( 60) GGTTAGTG 1 chrIV:8964203-8964283 ( 55) GGTTAGTG 1 chrIV:13140959-13141039 ( 51) GGTTAGTG 1 chrX:6867087-6867167 ( 73) GGTTAGCG 1 chrV:6917434-6917514 ( 49) GGTTAGCG 1 chrV:19577043-19577123 ( 60) GGGTAGAG 1 chrIV:1465596-1465676 ( 53) GGGTAGAG 1 chrV:19177964-19178044 ( 52) GGGTAGAG 1 chrV:19581964-19582044 ( 55) GGGTAGAG 1 chrII:755115-755195 ( 43) GGGTAGAG 1 chrII:1477464-1477544 ( 52) GGTAAGAG 1 chrII:1478716-1478796 ( 57) GGTAAGAG 1 chrIII:1981613-1981693 ( 46) GGTAAGAG 1 chrIII:1982996-1983076 ( 55) GGTAAGAG 1 chrV:19667877-19667957 ( 43) GGATAGAG 1 chrIII:1048092-1048172 ( 38) GGATAGTG 1 chrIV:1470530-1470610 ( 52) GGATAGAG 1 chrV:19579671-19579751 ( 52) GGGTAGCG 1 chrII:2722149-2722229 ( 60) GGTAAGCG 1 chrII:12668299-12668379 ( 66) GGTAAGCG 1 chrV:20277082-20277162 ( 37) GGGAAGAG 1 chrV:19985005-19985085 ( 4) GGAAAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTAGWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.11739 E= 2.5e-011 -1181 -1181 210 -1181 -1181 -1181 210 -1181 -125 -1181 -26 137 -25 -1181 -1181 154 192 -1181 -1181 -1181 -1181 -1181 210 -1181 66 -76 -1181 73 -1181 -1181 210 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTAGWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.5e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.000000 0.194444 0.694444 0.222222 0.000000 0.000000 0.777778 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.416667 0.138889 0.000000 0.444444 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTAGWG MEME-4 regular expression -------------------------------------------------------------------------------- GGT[TA]AG[TA]G -------------------------------------------------------------------------------- Time 18.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGGGAG MEME-5 width = 8 sites = 17 llr = 179 E-value = 4.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGGGAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::2:a: pos.-specific C ::a::::: probability G :a:a8a:9 matrix T a::::::1 bits 2.1 *** * 1.9 **** ** 1.7 **** ** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGGGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:1410049-1410129 7 1.14e-05 cggcca tgcgggag agagctcaaa chrI:13220086-13220166 21 1.14e-05 cactcggcca tgcgggag acacctcaaC chrI:400647-400727 36 1.14e-05 cactcggcca tgcgggag agacctgtca chrX:15319940-15320020 33 1.14e-05 cactcggcca tgcgggag agagctcaaa chrX:351572-351652 45 1.14e-05 cactcggcca tgcgggag agacccgaca chrI:12756316-12756396 14 1.14e-05 cactcggcca tgcgggag agagctcaaa chrIII:6661839-6661919 23 1.14e-05 cactcggcca tgcgggag agacccggct chrIII:2494897-2494977 29 1.14e-05 cactcggcca tgcgggag acacctcaag chrV:8431455-8431535 31 1.14e-05 ccctcggcca tgcgggag acacctcaaa chrIII:629082-629162 42 1.14e-05 cacccggcca tgcgggag aaatctcaaa chrX:10299076-10299156 42 1.14e-05 cactcggcca tgcgggag agaccgagaa chrIII:6663582-6663662 24 1.14e-05 cactcggcca tgcgggag agagctcagg chrIV:11231531-11231611 70 2.44e-05 TCGCTTAGGG TGCGAGAG GTC chrX:1707450-1707530 10 2.44e-05 actcggcca tgcgagag acacctcaaa chrX:15751387-15751467 69 2.44e-05 TCGCTTTGGG TGCGAGAG GTCC chrII:4928545-4928625 13 3.75e-05 cactcggcca tgcgggat attcctcaaa chrX:1070770-1070850 14 3.75e-05 cactcggcca tgcgggat attcctccaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1410049-1410129 1.1e-05 6_[+5]_66 chrI:13220086-13220166 1.1e-05 20_[+5]_52 chrI:400647-400727 1.1e-05 35_[+5]_37 chrX:15319940-15320020 1.1e-05 32_[+5]_40 chrX:351572-351652 1.1e-05 44_[+5]_28 chrI:12756316-12756396 1.1e-05 13_[+5]_59 chrIII:6661839-6661919 1.1e-05 22_[+5]_50 chrIII:2494897-2494977 1.1e-05 28_[+5]_44 chrV:8431455-8431535 1.1e-05 30_[+5]_42 chrIII:629082-629162 1.1e-05 41_[+5]_31 chrX:10299076-10299156 1.1e-05 41_[+5]_31 chrIII:6663582-6663662 1.1e-05 23_[+5]_49 chrIV:11231531-11231611 2.4e-05 69_[+5]_3 chrX:1707450-1707530 2.4e-05 9_[+5]_63 chrX:15751387-15751467 2.4e-05 68_[+5]_4 chrII:4928545-4928625 3.7e-05 12_[+5]_60 chrX:1070770-1070850 3.7e-05 13_[+5]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGGGAG width=8 seqs=17 chrI:1410049-1410129 ( 7) TGCGGGAG 1 chrI:13220086-13220166 ( 21) TGCGGGAG 1 chrI:400647-400727 ( 36) TGCGGGAG 1 chrX:15319940-15320020 ( 33) TGCGGGAG 1 chrX:351572-351652 ( 45) TGCGGGAG 1 chrI:12756316-12756396 ( 14) TGCGGGAG 1 chrIII:6661839-6661919 ( 23) TGCGGGAG 1 chrIII:2494897-2494977 ( 29) TGCGGGAG 1 chrV:8431455-8431535 ( 31) TGCGGGAG 1 chrIII:629082-629162 ( 42) TGCGGGAG 1 chrX:10299076-10299156 ( 42) TGCGGGAG 1 chrIII:6663582-6663662 ( 24) TGCGGGAG 1 chrIV:11231531-11231611 ( 70) TGCGAGAG 1 chrX:1707450-1707530 ( 10) TGCGAGAG 1 chrX:15751387-15751467 ( 69) TGCGAGAG 1 chrII:4928545-4928625 ( 13) TGCGGGAT 1 chrX:1070770-1070850 ( 14) TGCGGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.4326 E= 4.3e-007 -1073 -1073 -1073 190 -1073 -1073 210 -1073 -1073 209 -1073 -1073 -1073 -1073 210 -1073 -58 -1073 182 -1073 -1073 -1073 210 -1073 192 -1073 -1073 -1073 -1073 -1073 192 -119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.3e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.176471 0.000000 0.823529 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.882353 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGGAG MEME-5 regular expression -------------------------------------------------------------------------------- TGCGGGAG -------------------------------------------------------------------------------- Time 21.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:2031918-2031998 1.26e-02 23_[+1(4.98e-05)]_49 chrII:2736342-2736422 3.64e-02 [+1(6.15e-05)]_72 chrX:16300004-16300084 4.26e-02 80 chrV:15106372-15106452 2.31e-01 80 chrX:8623536-8623616 4.62e-02 80 chrX:5485038-5485118 5.58e-01 80 chrIV:16843723-16843803 1.03e-02 34_[+1(6.15e-05)]_38 chrIII:6663582-6663662 8.07e-05 15_[+1(6.15e-05)]_[+5(1.14e-05)]_49 chrIII:3108320-3108400 4.78e-01 80 chrIV:13140959-13141039 6.88e-05 41_[+2(3.64e-05)]_1_[+4(2.97e-05)]_\ 12_[+3(4.72e-05)]_2 chrIII:2889824-2889904 2.84e-03 60_[+2(6.10e-05)]_12 chrIV:2800030-2800110 4.40e-02 80 chrIV:8412699-8412779 1.02e-03 33_[+1(6.15e-05)]_39 chrII:2304716-2304796 3.58e-01 80 chrIV:16818703-16818783 1.75e-02 36_[+1(6.15e-05)]_36 chrV:15429296-15429376 7.75e-01 80 chrIV:8964203-8964283 1.51e-03 45_[+2(1.16e-05)]_1_[+4(2.97e-05)]_\ 18 chrIII:1982996-1983076 1.88e-04 9_[+1(4.98e-05)]_27_[+2(6.10e-05)]_\ 2_[+4(9.80e-05)]_18 chrV:7069792-7069872 2.46e-01 80 chrIII:3107693-3107773 3.60e-02 80 chrX:10299076-10299156 3.69e-05 33_[+1(6.15e-05)]_[+5(1.14e-05)]_31 chrIV:16681942-16682022 2.10e-01 80 chrIII:7597945-7598025 2.16e-01 80 chrV:19579671-19579751 1.36e-04 18_[+3(4.72e-05)]_15_[+2(2.49e-05)]_\ 19_[+2(6.10e-05)]_4 chrIV:16670924-16671004 6.35e-01 80 chrX:1589633-1589713 4.79e-01 80 chrI:12142880-12142960 3.05e-02 37_[+2(6.10e-05)]_35 chrV:19484655-19484735 4.13e-01 80 chrI:2272419-2272499 5.38e-03 69_[+1(6.15e-05)]_3 chrIII:2652856-2652936 3.45e-01 80 chrIII:629082-629162 1.32e-02 41_[+5(1.14e-05)]_31 chrX:13973250-13973330 6.37e-04 50_[+2(3.64e-05)]_1_[+4(2.97e-05)]_\ 13 chrIV:15170364-15170444 1.71e-03 47_[+4(2.97e-05)]_25 chrII:13658579-13658659 1.23e-05 38_[+2(3.64e-05)]_1_[+4(2.97e-05)]_\ 12_[+3(4.72e-05)]_5 chrV:6711221-6711301 1.40e-03 51_[+2(3.64e-05)]_21 chrII:14802678-14802758 9.47e-01 80 chrI:973842-973922 9.78e-02 80 chrIV:1407231-1407311 1.88e-03 39_[+2(2.49e-05)]_33 chrV:8431455-8431535 6.33e-05 22_[+1(6.15e-05)]_[+5(1.14e-05)]_42 chrIII:3191888-3191968 1.83e-02 80 chrV:1561332-1561412 1.44e-04 51_[+2(3.64e-05)]_1_[+4(2.97e-05)]_\ 12 chrII:1522113-1522193 7.93e-03 62_[+3(4.72e-05)]_10 chrIII:2494897-2494977 1.12e-04 20_[+1(6.15e-05)]_[+5(1.14e-05)]_44 chrX:15770065-15770145 6.85e-01 80 chrX:1089282-1089362 1.65e-01 80 chrIII:2065093-2065173 7.00e-03 52_[+2(3.64e-05)]_20 chrIV:1470530-1470610 1.75e-04 80 chrII:755115-755195 1.17e-03 32_[+2(2.49e-05)]_2_[+4(6.87e-05)]_\ 30 chrIII:3186281-3186361 1.78e-03 33_[+3(4.72e-05)]_27_[+2(4.95e-05)]_\ 4 chrV:16474827-16474907 6.45e-03 23_[+3(4.72e-05)]_35_[+2(3.64e-05)]_\ 6 chrV:19581964-19582044 3.78e-04 44_[+2(2.49e-05)]_2_[+4(6.87e-05)]_\ 9_[+2(6.10e-05)]_1 chrX:8818598-8818678 2.44e-01 80 chrV:17947434-17947514 1.41e-02 21_[+1(1.32e-05)]_51 chrX:14136991-14137071 1.87e-01 80 chrIV:16482319-16482399 3.02e-03 26_[+2(3.64e-05)]_46 chrX:2801809-2801889 3.88e-04 58_[+2(3.64e-05)]_1_[+4(2.97e-05)]_\ 5 chrIII:1981613-1981693 2.04e-03 35_[+2(6.10e-05)]_2_[+4(9.80e-05)]_\ 27 chrX:30389-30469 4.22e-02 80 chrII:6798196-6798276 6.61e-01 80 chrIV:4949893-4949973 4.14e-05 38_[+2(7.43e-05)]_1_[+4(2.97e-05)]_\ 12_[+3(4.72e-05)]_5 chrX:1070770-1070850 5.41e-05 5_[+1(6.15e-05)]_[+5(3.75e-05)]_26_\ [+3(4.72e-05)]_25 chrI:12606014-12606094 2.18e-01 80 chrIII:3101055-3101135 1.78e-02 35_[+2(6.10e-05)]_13_[+2(4.95e-05)]_\ 16 chrIII:2290066-2290146 1.61e-01 60_[+3(9.36e-05)]_12 chrIV:1394234-1394314 3.58e-03 54_[+4(2.97e-05)]_18 chrI:5854842-5854922 2.96e-03 16_[+1(3.80e-05)]_56 chrIII:1007292-1007372 2.91e-02 80 chrI:13694908-13694988 9.95e-03 71_[+2(3.64e-05)]_1 chrIII:3188728-3188808 6.84e-03 44_[+2(1.16e-05)]_13_[+2(4.95e-05)]_\ 7 chrX:11806615-11806695 1.37e-01 80 chrX:3949922-3950002 1.39e-02 80 chrX:11162953-11163033 4.23e-02 32_[+1(6.15e-05)]_40 chrV:20119933-20120013 1.18e-01 31_[+1(1.32e-05)]_41 chrIV:16260417-16260497 1.15e-01 80 chrIII:2137636-2137716 1.51e-02 43_[+3(4.72e-05)]_29 chrX:865435-865515 5.62e-02 22_[+1(8.83e-05)]_50 chrIV:17150622-17150702 2.81e-03 30_[+1(1.32e-05)]_20_[+3(4.72e-05)]_\ 14 chrIV:8123685-8123765 5.34e-03 58_[+4(2.97e-05)]_14 chrIV:1383463-1383543 1.82e-02 80 chrIII:1662556-1662636 6.17e-02 80 chrIII:8541182-8541262 1.30e-04 44_[+4(2.97e-05)]_12_[+3(4.72e-05)]_\ 8 chrIV:2738623-2738703 1.25e-02 25_[+3(9.36e-05)]_47 chrIII:3190799-3190879 3.60e-03 16_[+3(9.36e-05)]_46_[+2(7.43e-05)]_\ 2 chrIII:3108961-3109041 2.81e-02 52_[+2(7.43e-05)]_20 chrII:1100334-1100414 1.41e-02 28_[+1(3.80e-05)]_13_[+1(1.32e-05)]_\ 23 chrIII:1048092-1048172 2.25e-03 28_[+2(7.43e-05)]_44 chrI:13894866-13894946 3.04e-01 80 chrX:1972932-1973012 3.12e-01 80 chrIV:3681927-3682007 1.68e-01 80 chrII:1092161-1092241 3.07e-01 80 chrIII:3106464-3106544 8.50e-02 12_[+1(3.80e-05)]_60 chrIII:2873256-2873336 1.49e-01 80 chrIII:6661839-6661919 6.41e-05 14_[+1(6.15e-05)]_[+5(1.14e-05)]_50 chrX:1830625-1830705 2.40e-01 80 chrII:6168873-6168953 1.18e-01 80 chrIII:2304314-2304394 3.00e-03 10_[+1(1.32e-05)]_62 chrII:12668299-12668379 1.16e-04 23_[+1(4.98e-05)]_24_[+2(2.49e-05)]_\ 17 chrV:19245833-19245913 1.61e-01 80 chrV:13027080-13027160 3.87e-02 5_[+1(8.83e-05)]_67 chrV:13507245-13507325 4.46e-02 49_[+3(4.72e-05)]_23 chrV:6917434-6917514 2.41e-04 38_[+2(6.10e-05)]_2_[+4(4.29e-05)]_\ 24 chrII:11824811-11824891 2.13e-01 80 chrX:1629916-1629996 5.99e-02 80 chrIII:3099540-3099620 4.56e-02 80 chrII:1478716-1478796 1.67e-03 56_[+4(9.80e-05)]_16 chrII:3031447-3031527 3.05e-04 29_[+1(7.33e-05)]_33_[+3(4.72e-05)]_\ 2 chrII:1478157-1478237 7.46e-03 10_[+1(4.98e-05)]_53_[+3(4.72e-05)]_\ 1 chrII:1482563-1482643 5.90e-03 49_[+3(4.72e-05)]_23 chrIII:49811-49891 6.75e-02 41_[+1(4.98e-05)]_31 chrV:17317924-17318004 1.13e-03 23_[+1(8.83e-05)]_49 chrII:4928545-4928625 9.18e-05 4_[+1(6.15e-05)]_[+5(3.75e-05)]_26_\ [+3(9.36e-05)]_26 chrIV:16731418-16731498 9.23e-04 7_[+3(4.72e-05)]_35_[+2(3.64e-05)]_\ 22 chrII:1103070-1103150 3.40e-02 80 chrI:1331202-1331282 3.12e-01 80 chrX:12304398-12304478 9.24e-03 39_[+1(6.15e-05)]_33 chrI:7718901-7718981 5.15e-02 63_[+4(2.97e-05)]_9 chrIV:16555709-16555789 1.60e-01 80 chrIII:12192660-12192740 7.29e-02 80 chrX:1491190-1491270 6.21e-01 80 chrV:17826480-17826560 1.36e-02 40_[+1(4.98e-05)]_32 chrIV:2656873-2656953 2.54e-02 80 chrI:12756316-12756396 1.22e-04 5_[+1(6.15e-05)]_[+5(1.14e-05)]_59 chrX:16208875-16208955 2.76e-01 18_[+1(8.83e-05)]_54 chrX:6867087-6867167 1.67e-02 72_[+4(4.29e-05)] chrII:1477464-1477544 9.71e-03 51_[+4(9.80e-05)]_21 chrIII:58890-58970 2.99e-03 46_[+2(3.64e-05)]_1_[+4(2.97e-05)]_\ 17 chrV:19983968-19984048 9.83e-01 80 chrX:17400600-17400680 8.72e-02 11_[+1(8.83e-05)]_61 chrIII:3109709-3109789 7.82e-01 80 chrII:1102383-1102463 2.04e-01 80 chrIV:11497426-11497506 1.23e-01 80 chrI:2636325-2636405 2.66e-01 80 chrI:12610389-12610469 2.31e-02 39_[+2(2.49e-05)]_33 chrX:351572-351652 1.69e-04 36_[+1(6.15e-05)]_[+5(1.14e-05)]_28 chrIV:5350624-5350704 7.60e-01 80 chrIV:17127274-17127354 2.16e-01 80 chrIII:11473007-11473087 4.81e-02 46_[+2(2.49e-05)]_26 chrI:13156392-13156472 3.37e-01 80 chrIII:1230835-1230915 1.43e-01 80 chrX:1939423-1939503 2.32e-01 80 chrX:9325909-9325989 4.74e-02 80 chrIII:2290708-2290788 8.27e-04 8_[+3(4.72e-05)]_14_[+2(2.49e-05)]_\ 42 chrIII:3105369-3105449 2.32e-01 59_[+3(9.36e-05)]_13 chrX:15319940-15320020 1.22e-04 24_[+1(6.15e-05)]_[+5(1.14e-05)]_40 chrV:706586-706666 8.42e-04 8_[+3(4.72e-05)]_35_[+2(3.64e-05)]_\ 21 chrV:16219126-16219206 6.38e-03 80 chrI:432148-432228 8.04e-02 44_[+1(6.15e-05)]_28 chrII:13605511-13605591 7.92e-02 80 chrIV:16583802-16583882 2.23e-01 80 chrV:14237552-14237632 1.56e-01 80 chrII:754350-754430 2.50e-01 80 chrI:400647-400727 5.85e-05 27_[+1(6.15e-05)]_[+5(1.14e-05)]_26_\ [+3(9.36e-05)]_3 chrV:19985005-19985085 1.39e-02 80 chrIV:16577337-16577417 5.31e-01 80 chrV:17767916-17767996 4.21e-03 38_[+3(9.36e-05)]_34 chrI:13324944-13325024 5.05e-01 80 chrI:7571795-7571875 1.39e-01 80 chrX:15751387-15751467 2.99e-03 68_[+5(2.44e-05)]_4 chrX:1707450-1707530 3.83e-05 1_[+1(6.15e-05)]_[+5(2.44e-05)]_26_\ [+3(4.72e-05)]_29 chrV:19667877-19667957 1.35e-04 32_[+2(2.49e-05)]_40 chrX:14211323-14211403 3.66e-02 42_[+1(4.98e-05)]_30 chrIII:49230-49310 2.70e-01 80 chrII:1814529-1814609 7.76e-01 80 chrX:1698614-1698694 3.72e-01 80 chrIII:1354672-1354752 9.23e-04 7_[+3(4.72e-05)]_35_[+2(3.64e-05)]_\ 22 chrX:1089796-1089876 3.68e-01 80 chrV:19398551-19398631 2.95e-03 41_[+2(2.49e-05)]_31 chrV:4310553-4310633 1.43e-01 80 chrV:20223880-20223960 1.30e-02 50_[+1(1.32e-05)]_22 chrV:18912669-18912749 2.10e-03 9_[+1(4.98e-05)]_48_[+2(6.10e-05)]_\ 7 chrIV:9000824-9000904 1.58e-01 36_[+1(8.83e-05)]_36 chrIV:6562177-6562257 4.57e-03 80 chrII:2722149-2722229 2.59e-04 49_[+2(2.49e-05)]_23 chrIV:1390259-1390339 3.09e-02 8_[+1(4.98e-05)]_64 chrIII:1009942-1010022 1.89e-01 80 chrX:16523966-16524046 4.64e-01 80 chrIV:2747555-2747635 1.35e-01 80 chrI:4755062-4755142 5.71e-05 3_[+3(4.72e-05)]_34_[+2(3.64e-05)]_\ 1_[+4(2.97e-05)]_18 chrV:20217052-20217132 3.35e-05 5_[+1(1.32e-05)]_56_[+3(4.72e-05)]_\ 3 chrIII:11478916-11478996 1.17e-01 80 chrIII:7378916-7378996 5.55e-01 80 chrII:1481826-1481906 2.66e-01 80 chrIII:6056341-6056421 7.62e-02 24_[+1(6.15e-05)]_48 chrX:13717160-13717240 7.93e-02 80 chrIV:13430301-13430381 6.68e-01 80 chrIII:2129527-2129607 2.07e-03 29_[+3(4.72e-05)]_43 chrI:5298190-5298270 2.39e-02 64_[+2(3.64e-05)]_8 chrV:18849294-18849374 9.03e-04 51_[+2(2.49e-05)]_2_[+4(2.97e-05)]_\ 11 chrX:9025686-9025766 5.62e-02 33_[+1(8.83e-05)]_39 chrIII:302677-302757 5.05e-05 39_[+2(3.64e-05)]_1_[+4(2.97e-05)]_\ 12_[+3(4.72e-05)]_4 chrX:8826177-8826257 1.46e-01 80 chrIII:11609069-11609149 6.54e-01 80 chrII:12435614-12435694 2.17e-03 22_[+1(4.98e-05)]_50 chrIV:11231531-11231611 1.85e-03 32_[+2(4.95e-05)]_29_[+5(2.44e-05)]_\ 3 chrX:13697663-13697743 8.07e-02 80 chrIII:3355902-3355982 3.42e-02 80 chrV:20347821-20347901 2.27e-01 80 chrIV:1381758-1381838 3.42e-02 57_[+3(9.36e-05)]_15 chrII:753616-753696 1.08e-02 72_[+2(2.49e-05)] chrIV:15318544-15318624 1.55e-01 80 chrV:19570265-19570345 1.14e-01 30_[+1(1.32e-05)]_42 chrX:1993388-1993468 1.95e-01 80 chrX:16690045-16690125 9.29e-02 6_[+1(6.15e-05)]_66 chrIV:1464620-1464700 9.82e-02 80 chrIV:15604360-15604440 9.10e-03 8_[+1(8.83e-05)]_64 chrX:8577984-8578064 2.03e-02 38_[+2(6.10e-05)]_34 chrI:13220086-13220166 1.19e-03 12_[+1(6.15e-05)]_[+5(1.14e-05)]_52 chrV:15480664-15480744 1.19e-01 80 chrV:15516636-15516716 8.44e-02 39_[+2(6.10e-05)]_13_[+2(2.49e-05)]_\ 12 chrIII:8653634-8653714 3.11e-01 31_[+1(8.83e-05)]_41 chrIV:1637475-1637555 1.50e-01 80 chrV:20350552-20350632 2.27e-01 80 chrX:9074693-9074773 3.20e-01 80 chrX:17399985-17400065 8.72e-02 8_[+1(8.83e-05)]_64 chrX:8639257-8639337 4.03e-02 80 chrV:18848731-18848811 1.57e-02 36_[+1(1.32e-05)]_36 chrIV:10311278-10311358 1.99e-01 80 chrV:20277082-20277162 8.56e-04 26_[+2(2.49e-05)]_46 chrIII:7384079-7384159 9.31e-01 80 chrV:19580955-19581035 2.31e-01 80 chrX:1590134-1590214 2.14e-01 4_[+1(8.83e-05)]_68 chrV:17542503-17542583 1.98e-02 11_[+1(8.83e-05)]_61 chrV:7506343-7506423 1.28e-01 80 chrX:8149099-8149179 9.92e-02 80 chrIV:11197007-11197087 7.71e-01 80 chrI:12283972-12284052 1.24e-01 80 chrI:11584146-11584226 1.97e-01 33_[+1(8.83e-05)]_39 chrV:19177964-19178044 1.87e-04 41_[+2(2.49e-05)]_2_[+4(6.87e-05)]_\ 9_[+2(2.49e-05)]_4 chrIII:3189920-3190000 1.42e-02 55_[+2(7.43e-05)]_17 chrIII:5782271-5782351 7.84e-02 80 chrI:1410049-1410129 4.04e-03 6_[+5(1.14e-05)]_66 chrX:13444423-13444503 2.17e-02 36_[+2(3.64e-05)]_36 chrIII:4484563-4484643 4.85e-02 6_[+1(1.32e-05)]_66 chrII:2955806-2955886 4.20e-02 40_[+2(6.10e-05)]_32 chrIV:1465596-1465676 6.86e-03 52_[+4(6.87e-05)]_20 chrII:3260874-3260954 2.69e-01 80 chrX:15242901-15242981 6.48e-03 32_[+1(6.15e-05)]_40 chrIV:15311184-15311264 1.61e-01 80 chrX:16208301-16208381 1.10e-01 30_[+1(8.83e-05)]_42 chrIV:16036203-16036283 1.46e-02 80 chrX:12854886-12854966 2.60e-01 56_[+1(7.33e-05)]_16 chrV:13509637-13509717 1.76e-02 26_[+3(9.36e-05)]_46 chrIV:1380521-1380601 6.86e-02 80 chrI:14162805-14162885 1.26e-01 49_[+2(3.64e-05)]_23 chrII:1700829-1700909 3.29e-01 80 chrV:17931951-17932031 1.11e-04 43_[+2(2.49e-05)]_2_[+4(2.97e-05)]_\ 19 chrIII:3185375-3185455 8.14e-02 68_[+2(7.43e-05)]_4 chrV:19577043-19577123 3.70e-03 59_[+4(6.87e-05)]_13 chrIII:10960556-10960636 2.12e-02 19_[+1(1.32e-05)]_53 chrX:8037485-8037565 2.86e-02 28_[+2(7.43e-05)]_44 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************