******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/swsn-7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:12369669-12369749 1.0000 80 chrX:8157265-8157345 1.0000 80 chrIV:14837061-14837141 1.0000 80 chrX:12669109-12669189 1.0000 80 chrX:16704247-16704327 1.0000 80 chrI:973162-973242 1.0000 80 chrIV:3519537-3519617 1.0000 80 chrIV:6514878-6514958 1.0000 80 chrII:13016546-13016626 1.0000 80 chrX:8159096-8159176 1.0000 80 chrIII:482871-482951 1.0000 80 chrV:3870528-3870608 1.0000 80 chrV:20455808-20455888 1.0000 80 chrIII:10628496-10628576 1.0000 80 chrIII:8901249-8901329 1.0000 80 chrIV:11026812-11026892 1.0000 80 chrV:20493716-20493796 1.0000 80 chrI:11940125-11940205 1.0000 80 chrIV:5561536-5561616 1.0000 80 chrX:12200699-12200779 1.0000 80 chrIII:4456768-4456848 1.0000 80 chrV:8535053-8535133 1.0000 80 chrI:10839151-10839231 1.0000 80 chrII:347856-347936 1.0000 80 chrX:5298300-5298380 1.0000 80 chrX:14478365-14478445 1.0000 80 chrI:5937074-5937154 1.0000 80 chrIV:16658893-16658973 1.0000 80 chrIV:1056642-1056722 1.0000 80 chrI:10858177-10858257 1.0000 80 chrIII:5639979-5640059 1.0000 80 chrIII:2089627-2089707 1.0000 80 chrV:11733652-11733732 1.0000 80 chrII:7874112-7874192 1.0000 80 chrI:4908218-4908298 1.0000 80 chrII:13338095-13338175 1.0000 80 chrI:3741268-3741348 1.0000 80 chrI:13384675-13384755 1.0000 80 chrV:6630935-6631015 1.0000 80 chrII:5544291-5544371 1.0000 80 chrI:4805458-4805538 1.0000 80 chrI:9929551-9929631 1.0000 80 chrI:8962062-8962142 1.0000 80 chrII:2962688-2962768 1.0000 80 chrII:13083900-13083980 1.0000 80 chrX:14562445-14562525 1.0000 80 chrX:9999319-9999399 1.0000 80 chrI:11693670-11693750 1.0000 80 chrIII:9766341-9766421 1.0000 80 chrX:826060-826140 1.0000 80 chrII:1402323-1402403 1.0000 80 chrV:20704137-20704217 1.0000 80 chrIII:4113763-4113843 1.0000 80 chrII:15190212-15190292 1.0000 80 chrI:9149359-9149439 1.0000 80 chrX:10566907-10566987 1.0000 80 chrIV:813520-813600 1.0000 80 chrIII:6009078-6009158 1.0000 80 chrIV:5848133-5848213 1.0000 80 chrX:4957437-4957517 1.0000 80 chrIII:6352614-6352694 1.0000 80 chrIII:4317177-4317257 1.0000 80 chrI:13688719-13688799 1.0000 80 chrIII:3695554-3695634 1.0000 80 chrIV:2349077-2349157 1.0000 80 chrII:2649161-2649241 1.0000 80 chrIV:11125390-11125470 1.0000 80 chrIV:9525129-9525209 1.0000 80 chrII:9263923-9264003 1.0000 80 chrIII:10035964-10036044 1.0000 80 chrIV:8869789-8869869 1.0000 80 chrIV:4277863-4277943 1.0000 80 chrII:3209401-3209481 1.0000 80 chrIII:11641494-11641574 1.0000 80 chrIV:2734758-2734838 1.0000 80 chrX:910486-910566 1.0000 80 chrIII:3220475-3220555 1.0000 80 chrIV:1804772-1804852 1.0000 80 chrX:2176602-2176682 1.0000 80 chrII:8016291-8016371 1.0000 80 chrIII:491255-491335 1.0000 80 chrI:3070207-3070287 1.0000 80 chrI:12164772-12164852 1.0000 80 chrV:13591674-13591754 1.0000 80 chrV:9425780-9425860 1.0000 80 chrIV:14656756-14656836 1.0000 80 chrV:128030-128110 1.0000 80 chrIV:1328901-1328981 1.0000 80 chrV:8302669-8302749 1.0000 80 chrIV:11521129-11521209 1.0000 80 chrI:10970249-10970329 1.0000 80 chrIV:11064068-11064148 1.0000 80 chrIII:7115129-7115209 1.0000 80 chrIV:14786889-14786969 1.0000 80 chrV:1366242-1366322 1.0000 80 chrI:11188231-11188311 1.0000 80 chrIV:1953309-1953389 1.0000 80 chrII:9669121-9669201 1.0000 80 chrIV:13272638-13272718 1.0000 80 chrII:7836737-7836817 1.0000 80 chrII:8041787-8041867 1.0000 80 chrIII:96316-96396 1.0000 80 chrIII:8229659-8229739 1.0000 80 chrII:7090258-7090338 1.0000 80 chrX:8160196-8160276 1.0000 80 chrI:13161955-13162035 1.0000 80 chrV:18689834-18689914 1.0000 80 chrX:7811126-7811206 1.0000 80 chrIII:7359185-7359265 1.0000 80 chrI:2024740-2024820 1.0000 80 chrI:12877174-12877254 1.0000 80 chrIV:5160334-5160414 1.0000 80 chrIV:6294148-6294228 1.0000 80 chrV:16040614-16040694 1.0000 80 chrX:14513617-14513697 1.0000 80 chrIV:10507753-10507833 1.0000 80 chrIII:4332704-4332784 1.0000 80 chrI:6949391-6949471 1.0000 80 chrV:14425267-14425347 1.0000 80 chrII:6601175-6601255 1.0000 80 chrIV:9534489-9534569 1.0000 80 chrI:10438005-10438085 1.0000 80 chrII:4828220-4828300 1.0000 80 chrIV:6156982-6157062 1.0000 80 chrX:7793816-7793896 1.0000 80 chrIV:17427050-17427130 1.0000 80 chrIV:12029949-12030029 1.0000 80 chrV:9128751-9128831 1.0000 80 chrV:16499174-16499254 1.0000 80 chrIII:13152829-13152909 1.0000 80 chrIV:2776087-2776167 1.0000 80 chrV:5204337-5204417 1.0000 80 chrIV:7632678-7632758 1.0000 80 chrI:6358549-6358629 1.0000 80 chrIV:15021089-15021169 1.0000 80 chrIII:634718-634798 1.0000 80 chrX:5210655-5210735 1.0000 80 chrIV:9260480-9260560 1.0000 80 chrIII:5499106-5499186 1.0000 80 chrIV:14622348-14622428 1.0000 80 chrIV:1623909-1623989 1.0000 80 chrIV:5089858-5089938 1.0000 80 chrX:7791967-7792047 1.0000 80 chrV:6095988-6096068 1.0000 80 chrI:10591688-10591768 1.0000 80 chrII:6928572-6928652 1.0000 80 chrI:6166757-6166837 1.0000 80 chrX:2819093-2819173 1.0000 80 chrI:3908584-3908664 1.0000 80 chrX:2596736-2596816 1.0000 80 chrII:12778515-12778595 1.0000 80 chrV:1943650-1943730 1.0000 80 chrII:626102-626182 1.0000 80 chrV:3757066-3757146 1.0000 80 chrI:7374830-7374910 1.0000 80 chrIII:11942820-11942900 1.0000 80 chrV:18895149-18895229 1.0000 80 chrIII:8029640-8029720 1.0000 80 chrIV:7512987-7513067 1.0000 80 chrIV:7390292-7390372 1.0000 80 chrIII:8490430-8490510 1.0000 80 chrV:20402979-20403059 1.0000 80 chrX:15725138-15725218 1.0000 80 chrII:4456194-4456274 1.0000 80 chrIV:5317359-5317439 1.0000 80 chrIII:7074129-7074209 1.0000 80 chrII:8684093-8684173 1.0000 80 chrI:12179537-12179617 1.0000 80 chrII:2059140-2059220 1.0000 80 chrV:12400841-12400921 1.0000 80 chrIII:7142213-7142293 1.0000 80 chrV:14990992-14991072 1.0000 80 chrII:15255948-15256028 1.0000 80 chrIV:5565318-5565398 1.0000 80 chrIII:7090736-7090816 1.0000 80 chrII:15173276-15173356 1.0000 80 chrIII:6489081-6489161 1.0000 80 chrX:7194027-7194107 1.0000 80 chrI:5589623-5589703 1.0000 80 chrI:9114050-9114130 1.0000 80 chrII:386119-386199 1.0000 80 chrII:13477368-13477448 1.0000 80 chrIII:95116-95196 1.0000 80 chrI:663639-663719 1.0000 80 chrIII:1591816-1591896 1.0000 80 chrV:9513761-9513841 1.0000 80 chrIV:5369030-5369110 1.0000 80 chrI:9488279-9488359 1.0000 80 chrII:14810805-14810885 1.0000 80 chrIV:11068477-11068557 1.0000 80 chrIV:1739079-1739159 1.0000 80 chrV:8428770-8428850 1.0000 80 chrIV:8758806-8758886 1.0000 80 chrIII:12528169-12528249 1.0000 80 chrII:1085052-1085132 1.0000 80 chrV:1196152-1196232 1.0000 80 chrV:2236005-2236085 1.0000 80 chrIV:12651705-12651785 1.0000 80 chrV:10661692-10661772 1.0000 80 chrV:7575702-7575782 1.0000 80 chrI:9110935-9111015 1.0000 80 chrIII:7952250-7952330 1.0000 80 chrII:11713670-11713750 1.0000 80 chrI:11840836-11840916 1.0000 80 chrX:7236850-7236930 1.0000 80 chrI:7421421-7421501 1.0000 80 chrIII:7978850-7978930 1.0000 80 chrIV:2052540-2052620 1.0000 80 chrIII:6402487-6402567 1.0000 80 chrII:7640300-7640380 1.0000 80 chrII:10744952-10745032 1.0000 80 chrV:7894120-7894200 1.0000 80 chrI:13958600-13958680 1.0000 80 chrI:2586267-2586347 1.0000 80 chrI:1049260-1049340 1.0000 80 chrX:13502496-13502576 1.0000 80 chrIV:4360662-4360742 1.0000 80 chrI:9374712-9374792 1.0000 80 chrIV:7619495-7619575 1.0000 80 chrII:7593384-7593464 1.0000 80 chrIV:4184937-4185017 1.0000 80 chrIII:5758850-5758930 1.0000 80 chrIII:1037333-1037413 1.0000 80 chrII:601445-601525 1.0000 80 chrI:4941284-4941364 1.0000 80 chrII:6709174-6709254 1.0000 80 chrII:3816388-3816468 1.0000 80 chrV:9545431-9545511 1.0000 80 chrIV:5805620-5805700 1.0000 80 chrIII:6383353-6383433 1.0000 80 chrIV:1108207-1108287 1.0000 80 chrV:19190233-19190313 1.0000 80 chrV:4063710-4063790 1.0000 80 chrV:8663163-8663243 1.0000 80 chrIV:8232620-8232700 1.0000 80 chrIV:15814199-15814279 1.0000 80 chrIV:12209142-12209222 1.0000 80 chrV:19001135-19001215 1.0000 80 chrX:1439098-1439178 1.0000 80 chrIII:3671141-3671221 1.0000 80 chrI:3501280-3501360 1.0000 80 chrII:14969445-14969525 1.0000 80 chrV:11082605-11082685 1.0000 80 chrV:12518869-12518949 1.0000 80 chrX:12899283-12899363 1.0000 80 chrIII:5949990-5950070 1.0000 80 chrV:13627289-13627369 1.0000 80 chrX:1964994-1965074 1.0000 80 chrX:4818422-4818502 1.0000 80 chrI:9962075-9962155 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_swsn-7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/swsn-7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.26 C 0.238 G 0.224 T 0.279 Background letter frequencies (from file dataset with add-one prior applied): A 0.26 C 0.238 G 0.224 T 0.279 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGARAVR MEME-1 width = 8 sites = 77 llr = 573 E-value = 9.9e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGARAVR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:a3635 pos.-specific C ::::124: probability G a:a:5225 matrix T ::::::1: bits 2.2 * * 1.9 **** 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.1 **** * (10.7 bits) 0.9 **** * 0.6 ****** * 0.4 ****** * 0.2 ******** 0.0 -------- Multilevel GAGAGACG consensus AGAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAVR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1964994-1965074 61 1.05e-05 TTTTGCAATT GAGAGACG CAGACGGAAA chrIII:5758850-5758930 20 1.05e-05 ACGTTGAGCC GAGAGACG CAGGCAAACC chrII:626102-626182 15 1.05e-05 GTGGGGACGG GAGAGACG CAGACAATAA chrIII:13152829-13152909 24 1.05e-05 ATGCGAAATC GAGAGACG CAGAGAAGCC chrIII:4332704-4332784 16 1.05e-05 GCAAATGTGA GAGAGACG AGAGAAAGAA chrIII:96316-96396 24 1.05e-05 gaaatgcagt gagagacg cagagaTTTG chrIV:13272638-13272718 59 1.05e-05 AATGCATTGG GAGAGACG CAGAGATGTG chrV:128030-128110 26 1.05e-05 GTGCAAAAAT GAGAGACG GAGAGTATTT chrIV:1804772-1804852 15 1.05e-05 AAGGGAAGAC GAGAGACG CAGGCGGTAC chrI:11693670-11693750 48 1.05e-05 TTGGGGTGGT GAGAGACG CAGAGATGAA chrII:13016546-13016626 3 1.05e-05 AT GAGAGACG CAGAGACATG chrIV:3519537-3519617 22 1.05e-05 ACAAGAAATG GAGAGACG CCGACAGACC chrII:3816388-3816468 70 3.43e-05 GCGTGACGAC GAGAGACA CGA chrI:11940125-11940205 61 3.43e-05 GTGCGCAAGA GAGAGACA GAGAAACATA chrIV:2052540-2052620 49 6.98e-05 ACGAAAAAAC GAGAGAAA ATAGTGGGAC chrII:14810805-14810885 24 6.98e-05 CATGGGGTCG GAGAGAGG AAATGACGGA chrIII:1591816-1591896 34 6.98e-05 ACgagagaga gagagaaa gagagagtat chrIV:5565318-5565398 37 6.98e-05 TGCGCCGTAA GAGAGAGG ACCGACCCTC chrX:15725138-15725218 58 6.98e-05 GCGGAATCGA GAGAGAGG AGAGGACGAG chrV:3757066-3757146 21 6.98e-05 GTGCAAAAGT GAGAGAGG GAAAAGAGAA chrX:7811126-7811206 45 6.98e-05 TAGAGAGATG GAGAGAAA AAAGCAACCT chrI:12164772-12164852 49 6.98e-05 AAGAAACACA GAGAGAAA ATTGGAGAAA chrII:2649161-2649241 23 6.98e-05 CTAGACGCAG GAGAGAAA GAACGTAGAA chrIII:8901249-8901329 68 6.98e-05 CTCATATGTC GAGAAACG CGTAG chrI:973162-973242 1 6.98e-05 . GAGAGAAA CGGAGACGCA chrV:20402979-20403059 9 1.18e-04 GAATGAGG GAGAGAGA TTCAGAGAAA chrIV:10507753-10507833 8 1.18e-04 AAAAGTG GAGAAAAG CGGAAATATA chrIV:16658893-16658973 66 1.18e-04 GTGAGGCACA GAGAGAGA GAGCACT chrI:10591688-10591768 27 1.38e-04 TTAATTGTCC GAGAGGAG TACACGCGCG chrIV:5160334-5160414 21 1.38e-04 TGTGTTACCC GAGAGGAG TCCACAAGGA chrII:9669121-9669201 20 1.38e-04 TACATTTTCC GAGAGGAG TACACAAACA chrII:9263923-9264003 65 1.51e-04 CGGAAGAGAT GAGAGATG AGCACCTG chrX:4957437-4957517 64 1.51e-04 TGAGGAGATT GAGAGATG CCGTGCTGC chrIII:3671141-3671221 4 1.87e-04 GCA GAGAAAAA GAGATTAGTT chrII:6709174-6709254 17 1.87e-04 aagaagaaaa gagaaaaa ggagtgtgta chrI:13688719-13688799 15 1.87e-04 agagagtgca gagaaaaa gagcgggaaa chrIV:813520-813600 31 1.87e-04 AGAGAGCGCA GAGAAAAA GGCGGTCTCT chrX:9999319-9999399 70 1.87e-04 CCGCTAAAAC GAGAGCCG ATG chrI:2586267-2586347 61 2.18e-04 GGAGAGCACA GAGAAGCG AGCGACGGCG chrI:9110935-9111015 68 2.18e-04 GATGTGGTAA GAGAGGAA AAGAC chrIII:1037333-1037413 22 2.43e-04 GCCAGCGATC GAGACACG CGCCAGCAAA chrII:10744952-10745032 11 2.43e-04 TGGAGTCGGC GAGAGATA GGAAGCAAAA chrIV:11068477-11068557 36 2.43e-04 CAATGTTGAA GAGAGATA CGTGTGTCAC chrV:8302669-8302749 6 2.43e-04 TCACA GAGACACG TCACAAAAAT chrV:11082605-11082685 62 2.78e-04 CTCGTCTCTC GAGAAAGA AAGCACACAT chrV:4063710-4063790 60 2.78e-04 cgtaaaattt gagaaaga tctcgcagcg chrIII:2089627-2089707 67 2.78e-04 GGCGTGCTCC GAGAGCCA ACACAC chrIV:7512987-7513067 27 3.12e-04 AAAAAAAAAG GAGAAGAG GTACGATGCT chrI:10438005-10438085 60 3.12e-04 CAGGGATTGT GAGAAGCA TAGAGGGTGC chrI:3070207-3070287 26 3.12e-04 TAGCTTGTCC GAGAAGAG TACACAGTGG chrIII:10628496-10628576 32 3.12e-04 TTGGGGCAGT GAGAAGAG AGTGCGCGAG chrIV:4360662-4360742 23 3.52e-04 GCAAAGGCAC GAGAAATG CGCCAGCACA chrI:13958600-13958680 41 3.52e-04 CTCATATGTC GAGAAATG CGGAAAAATT chrII:7836737-7836817 45 3.52e-04 GGGGTGAAAA GAGACAAG GTGATGACCC chrIV:11064068-11064148 23 3.52e-04 CGGCGAGCAA GAGACACA CGACGAGCGA chrV:9425780-9425860 2 3.52e-04 C GAGAAATG TTCACGACAA chrIII:3695554-3695634 51 3.52e-04 CCTCCACCAC GAGAAATG CGCAGAGAGA chrV:12518869-12518949 70 3.95e-04 TCCACCAACT GAGAGCAA GAA chrV:9545431-9545511 37 3.95e-04 CCGCGGCAGC GAGAGGTG GGGCCACCGC chrI:7421421-7421501 50 3.95e-04 ATAGGGGGTA GAGAGCGG GAGCAGAAGA chrX:7793816-7793896 18 3.95e-04 cataatgaaa gagaGCGG AGACGCAGAC chrIV:2734758-2734838 51 3.95e-04 AAAAAGCGAA GAGAGCAA AAGTGTAAGT chrI:12179537-12179617 66 4.18e-04 GTTTGGAAAA GAGAAGAA TGAAAAT chrX:14562445-14562525 73 4.18e-04 GACGCCATTG GAGAAGAA chrX:8157265-8157345 63 4.18e-04 AAGCAACAAG GAGAAGGG AGAATTTGGC chrI:9962075-9962155 68 5.17e-04 GTACAGGCGG GAGAGCGA AAACA chrIII:7074129-7074209 42 5.17e-04 GCGCTTTATT GAGAACCA TTTACGCGCG chrIV:12209142-12209222 10 6.11e-04 AAAATTTCA GAGAACAA AAATTAGTGT chrII:601445-601525 18 6.11e-04 TACTACTAGC GAGACGCA GACACATCAA chrIII:95116-95196 61 6.11e-04 GACTATGTAG GAGACGCA GAGAACAAGA chrV:1366242-1366322 53 6.11e-04 TTGAAGACGT GAGACGCA GCGGGGAAAA chrII:3209401-3209481 23 6.11e-04 GTTTACTGAA GAGACGCA GACACTTTTT chrIV:5089858-5089938 33 6.47e-04 TGCAACTCAA GAGACCCG AAGAACTCGG chrIV:6294148-6294228 23 6.95e-04 CGTCGAACAC GAGACGGG GTATGTGTCC chrX:910486-910566 57 6.95e-04 TTCTTGCCCA Gagaacga agatgaggaa chrII:7874112-7874192 36 6.95e-04 AATTTTCCAC GAGAAGTA CACAGCTTTG chrII:7090258-7090338 13 7.47e-04 ATGATTTTAT GAGAACTG CTGCTCTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAVR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1964994-1965074 1.1e-05 60_[+1]_12 chrIII:5758850-5758930 1.1e-05 19_[+1]_53 chrII:626102-626182 1.1e-05 14_[+1]_58 chrIII:13152829-13152909 1.1e-05 23_[+1]_49 chrIII:4332704-4332784 1.1e-05 15_[+1]_57 chrIII:96316-96396 1.1e-05 23_[+1]_49 chrIV:13272638-13272718 1.1e-05 58_[+1]_14 chrV:128030-128110 1.1e-05 25_[+1]_47 chrIV:1804772-1804852 1.1e-05 14_[+1]_58 chrI:11693670-11693750 1.1e-05 47_[+1]_25 chrII:13016546-13016626 1.1e-05 2_[+1]_70 chrIV:3519537-3519617 1.1e-05 21_[+1]_51 chrII:3816388-3816468 3.4e-05 69_[+1]_3 chrI:11940125-11940205 3.4e-05 60_[+1]_12 chrIV:2052540-2052620 7e-05 48_[+1]_24 chrII:14810805-14810885 7e-05 23_[+1]_49 chrIII:1591816-1591896 7e-05 33_[+1]_39 chrIV:5565318-5565398 7e-05 36_[+1]_36 chrX:15725138-15725218 7e-05 57_[+1]_15 chrV:3757066-3757146 7e-05 20_[+1]_52 chrX:7811126-7811206 7e-05 44_[+1]_28 chrI:12164772-12164852 7e-05 48_[+1]_24 chrII:2649161-2649241 7e-05 22_[+1]_50 chrIII:8901249-8901329 7e-05 67_[+1]_5 chrI:973162-973242 7e-05 [+1]_72 chrV:20402979-20403059 0.00012 8_[+1]_64 chrIV:10507753-10507833 0.00012 7_[+1]_65 chrIV:16658893-16658973 0.00012 65_[+1]_7 chrI:10591688-10591768 0.00014 26_[+1]_46 chrIV:5160334-5160414 0.00014 20_[+1]_52 chrII:9669121-9669201 0.00014 19_[+1]_53 chrII:9263923-9264003 0.00015 64_[+1]_8 chrX:4957437-4957517 0.00015 63_[+1]_9 chrIII:3671141-3671221 0.00019 3_[+1]_69 chrII:6709174-6709254 0.00019 16_[+1]_56 chrI:13688719-13688799 0.00019 14_[+1]_58 chrIV:813520-813600 0.00019 30_[+1]_42 chrX:9999319-9999399 0.00019 69_[+1]_3 chrI:2586267-2586347 0.00022 60_[+1]_12 chrI:9110935-9111015 0.00022 67_[+1]_5 chrIII:1037333-1037413 0.00024 21_[+1]_51 chrII:10744952-10745032 0.00024 10_[+1]_62 chrIV:11068477-11068557 0.00024 35_[+1]_37 chrV:8302669-8302749 0.00024 5_[+1]_67 chrV:11082605-11082685 0.00028 61_[+1]_11 chrV:4063710-4063790 0.00028 59_[+1]_13 chrIII:2089627-2089707 0.00028 66_[+1]_6 chrIV:7512987-7513067 0.00031 26_[+1]_46 chrI:10438005-10438085 0.00031 59_[+1]_13 chrI:3070207-3070287 0.00031 25_[+1]_47 chrIII:10628496-10628576 0.00031 31_[+1]_41 chrIV:4360662-4360742 0.00035 22_[+1]_50 chrI:13958600-13958680 0.00035 40_[+1]_32 chrII:7836737-7836817 0.00035 44_[+1]_28 chrIV:11064068-11064148 0.00035 22_[+1]_50 chrV:9425780-9425860 0.00035 1_[+1]_71 chrIII:3695554-3695634 0.00035 50_[+1]_22 chrV:12518869-12518949 0.00039 69_[+1]_3 chrV:9545431-9545511 0.00039 36_[+1]_36 chrI:7421421-7421501 0.00039 49_[+1]_23 chrX:7793816-7793896 0.00039 17_[+1]_55 chrIV:2734758-2734838 0.00039 50_[+1]_22 chrI:12179537-12179617 0.00042 65_[+1]_7 chrX:14562445-14562525 0.00042 72_[+1] chrX:8157265-8157345 0.00042 62_[+1]_10 chrI:9962075-9962155 0.00052 67_[+1]_5 chrIII:7074129-7074209 0.00052 41_[+1]_31 chrIV:12209142-12209222 0.00061 9_[+1]_63 chrII:601445-601525 0.00061 17_[+1]_55 chrIII:95116-95196 0.00061 60_[+1]_12 chrV:1366242-1366322 0.00061 52_[+1]_20 chrII:3209401-3209481 0.00061 22_[+1]_50 chrIV:5089858-5089938 0.00065 32_[+1]_40 chrIV:6294148-6294228 0.0007 22_[+1]_50 chrX:910486-910566 0.0007 56_[+1]_16 chrII:7874112-7874192 0.0007 35_[+1]_37 chrII:7090258-7090338 0.00075 12_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAVR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGARAVR width=8 seqs=77 chrX:1964994-1965074 ( 61) GAGAGACG 1 chrIII:5758850-5758930 ( 20) GAGAGACG 1 chrII:626102-626182 ( 15) GAGAGACG 1 chrIII:13152829-13152909 ( 24) GAGAGACG 1 chrIII:4332704-4332784 ( 16) GAGAGACG 1 chrIII:96316-96396 ( 24) GAGAGACG 1 chrIV:13272638-13272718 ( 59) GAGAGACG 1 chrV:128030-128110 ( 26) GAGAGACG 1 chrIV:1804772-1804852 ( 15) GAGAGACG 1 chrI:11693670-11693750 ( 48) GAGAGACG 1 chrII:13016546-13016626 ( 3) GAGAGACG 1 chrIV:3519537-3519617 ( 22) GAGAGACG 1 chrII:3816388-3816468 ( 70) GAGAGACA 1 chrI:11940125-11940205 ( 61) GAGAGACA 1 chrIV:2052540-2052620 ( 49) GAGAGAAA 1 chrII:14810805-14810885 ( 24) GAGAGAGG 1 chrIII:1591816-1591896 ( 34) GAGAGAAA 1 chrIV:5565318-5565398 ( 37) GAGAGAGG 1 chrX:15725138-15725218 ( 58) GAGAGAGG 1 chrV:3757066-3757146 ( 21) GAGAGAGG 1 chrX:7811126-7811206 ( 45) GAGAGAAA 1 chrI:12164772-12164852 ( 49) GAGAGAAA 1 chrII:2649161-2649241 ( 23) GAGAGAAA 1 chrIII:8901249-8901329 ( 68) GAGAAACG 1 chrI:973162-973242 ( 1) GAGAGAAA 1 chrV:20402979-20403059 ( 9) GAGAGAGA 1 chrIV:10507753-10507833 ( 8) GAGAAAAG 1 chrIV:16658893-16658973 ( 66) GAGAGAGA 1 chrI:10591688-10591768 ( 27) GAGAGGAG 1 chrIV:5160334-5160414 ( 21) GAGAGGAG 1 chrII:9669121-9669201 ( 20) GAGAGGAG 1 chrII:9263923-9264003 ( 65) GAGAGATG 1 chrX:4957437-4957517 ( 64) GAGAGATG 1 chrIII:3671141-3671221 ( 4) GAGAAAAA 1 chrII:6709174-6709254 ( 17) GAGAAAAA 1 chrI:13688719-13688799 ( 15) GAGAAAAA 1 chrIV:813520-813600 ( 31) GAGAAAAA 1 chrX:9999319-9999399 ( 70) GAGAGCCG 1 chrI:2586267-2586347 ( 61) GAGAAGCG 1 chrI:9110935-9111015 ( 68) GAGAGGAA 1 chrIII:1037333-1037413 ( 22) GAGACACG 1 chrII:10744952-10745032 ( 11) GAGAGATA 1 chrIV:11068477-11068557 ( 36) GAGAGATA 1 chrV:8302669-8302749 ( 6) GAGACACG 1 chrV:11082605-11082685 ( 62) GAGAAAGA 1 chrV:4063710-4063790 ( 60) GAGAAAGA 1 chrIII:2089627-2089707 ( 67) GAGAGCCA 1 chrIV:7512987-7513067 ( 27) GAGAAGAG 1 chrI:10438005-10438085 ( 60) GAGAAGCA 1 chrI:3070207-3070287 ( 26) GAGAAGAG 1 chrIII:10628496-10628576 ( 32) GAGAAGAG 1 chrIV:4360662-4360742 ( 23) GAGAAATG 1 chrI:13958600-13958680 ( 41) GAGAAATG 1 chrII:7836737-7836817 ( 45) GAGACAAG 1 chrIV:11064068-11064148 ( 23) GAGACACA 1 chrV:9425780-9425860 ( 2) GAGAAATG 1 chrIII:3695554-3695634 ( 51) GAGAAATG 1 chrV:12518869-12518949 ( 70) GAGAGCAA 1 chrV:9545431-9545511 ( 37) GAGAGGTG 1 chrI:7421421-7421501 ( 50) GAGAGCGG 1 chrX:7793816-7793896 ( 18) GAGAGCGG 1 chrIV:2734758-2734838 ( 51) GAGAGCAA 1 chrI:12179537-12179617 ( 66) GAGAAGAA 1 chrX:14562445-14562525 ( 73) GAGAAGAA 1 chrX:8157265-8157345 ( 63) GAGAAGGG 1 chrI:9962075-9962155 ( 68) GAGAGCGA 1 chrIII:7074129-7074209 ( 42) GAGAACCA 1 chrIV:12209142-12209222 ( 10) GAGAACAA 1 chrII:601445-601525 ( 18) GAGACGCA 1 chrIII:95116-95196 ( 61) GAGACGCA 1 chrV:1366242-1366322 ( 53) GAGACGCA 1 chrII:3209401-3209481 ( 23) GAGACGCA 1 chrIV:5089858-5089938 ( 33) GAGACCCG 1 chrIV:6294148-6294228 ( 23) GAGACGGG 1 chrX:910486-910566 ( 57) GAGAACGA 1 chrII:7874112-7874192 ( 36) GAGAAGTA 1 chrII:7090258-7090338 ( 13) GAGAACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAVR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.33575 E= 9.9e-021 -1291 -1291 216 -1291 194 -1291 -1291 -1291 -1291 -1291 216 -1291 194 -1291 -1291 -1291 32 -87 129 -1291 120 -61 14 -1291 26 61 -30 -96 81 -1291 129 -1291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAVR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 9.9e-021 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.324675 0.129870 0.545455 0.000000 0.597403 0.155844 0.246753 0.000000 0.311688 0.363636 0.181818 0.142857 0.454545 0.000000 0.545455 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAVR MEME-1 regular expression -------------------------------------------------------------------------------- GAGA[GA][AG][CA][GA] -------------------------------------------------------------------------------- Time 8.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-2 width = 8 sites = 27 llr = 281 E-value = 4.9e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::91:a: probability G ::a:9::: matrix T :a:1:a:a bits 2.2 * * * 1.9 *** *** 1.7 *** **** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3501280-3501360 38 1.47e-05 tctctcgtct ctgcgtct cttctcATTA chrII:11713670-11713750 43 1.47e-05 CACCACGTCA CTGCGTCT CTAAGATGCA chrII:1085052-1085132 29 1.47e-05 TCAAAGATTC CTGCGTCT CGTTCATCTT chrV:8428770-8428850 39 1.47e-05 GTCAAAATCC CTGCGTCT CTAAATCTCT chrII:15173276-15173356 30 1.47e-05 CTCCCAATCC CTGCGTCT CTCACCGTCT chrIV:1623909-1623989 51 1.47e-05 TCTTCTTTCT CTGCGTCT CTTCTCTCTC chrIV:17427050-17427130 52 1.47e-05 GTAAACGAGC CTGCGTCT CTTCGGATGT chrIV:6156982-6157062 22 1.47e-05 AGATGTGTCT CTGCGTCT CCTCCTTCTG chrI:12877174-12877254 47 1.47e-05 CGCACAGTGT CTGCGTCT CTCTCATTCC chrI:11188231-11188311 29 1.47e-05 TGTACTTTCT CTGCGTCT CTCATCTTGC chrIII:3220475-3220555 23 1.47e-05 AAGAAATCCT CTGCGTCT CTCGCCTCAC chrII:3209401-3209481 68 1.47e-05 TCTTTCTCTC CTGCGTCT AGGTT chrII:2649161-2649241 58 1.47e-05 GAAAAAGTGT CTGCGTCT CTTCAAAAAA chrIV:813520-813600 47 1.47e-05 AAGGCGGTCT CTGCGTCT CTCTCCCCCA chrII:15190212-15190292 37 1.47e-05 CTTTATGCGT CTGCGTCT CTCTTGTTTT chrX:826060-826140 20 1.47e-05 GTACGTGTGT CTGCGTCT CTTCGCCCAG chrII:2962688-2962768 37 1.47e-05 TCTAGGCCGT CTGCGTCT CCGGTGTCGT chrII:5544291-5544371 1 1.47e-05 . CTGCGTCT TATGAAATTT chrII:13338095-13338175 57 1.47e-05 TCGTTAGTGT CTGCGTCT TTTCGATTTG chrIII:2089627-2089707 19 1.47e-05 CTTTGGTTGT CTGCGTCT CTCCGGGGTT chrII:347856-347936 58 1.47e-05 ATAGGTGTGC CTGCGTCT CTTTGGCGAG chrIV:14837061-14837141 13 1.47e-05 GCATGATTGT CTGCGTCT CCCGCTTCTC chrII:4456194-4456274 39 3.19e-05 CTACTACTCT CTGTGTCT CTTGGAAAAC chrIV:9260480-9260560 61 3.19e-05 TTTTTTATGT CTGTGTCT CTTCGTCTTG chrIII:5639979-5640059 66 3.19e-05 CTCACGTCGT CTGTGTCT CTTTCGA chrIII:6402487-6402567 55 4.75e-05 TCCATGTCAG CTGCCTCT TATTCTTCGC chrIII:9766341-9766421 25 6.58e-05 ctctcactgt ctgtctct ctTCAATTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3501280-3501360 1.5e-05 37_[+2]_35 chrII:11713670-11713750 1.5e-05 42_[+2]_30 chrII:1085052-1085132 1.5e-05 28_[+2]_44 chrV:8428770-8428850 1.5e-05 38_[+2]_34 chrII:15173276-15173356 1.5e-05 29_[+2]_43 chrIV:1623909-1623989 1.5e-05 50_[+2]_22 chrIV:17427050-17427130 1.5e-05 51_[+2]_21 chrIV:6156982-6157062 1.5e-05 21_[+2]_51 chrI:12877174-12877254 1.5e-05 46_[+2]_26 chrI:11188231-11188311 1.5e-05 28_[+2]_44 chrIII:3220475-3220555 1.5e-05 22_[+2]_50 chrII:3209401-3209481 1.5e-05 67_[+2]_5 chrII:2649161-2649241 1.5e-05 57_[+2]_15 chrIV:813520-813600 1.5e-05 46_[+2]_26 chrII:15190212-15190292 1.5e-05 36_[+2]_36 chrX:826060-826140 1.5e-05 19_[+2]_53 chrII:2962688-2962768 1.5e-05 36_[+2]_36 chrII:5544291-5544371 1.5e-05 [+2]_72 chrII:13338095-13338175 1.5e-05 56_[+2]_16 chrIII:2089627-2089707 1.5e-05 18_[+2]_54 chrII:347856-347936 1.5e-05 57_[+2]_15 chrIV:14837061-14837141 1.5e-05 12_[+2]_60 chrII:4456194-4456274 3.2e-05 38_[+2]_34 chrIV:9260480-9260560 3.2e-05 60_[+2]_12 chrIII:5639979-5640059 3.2e-05 65_[+2]_7 chrIII:6402487-6402567 4.8e-05 54_[+2]_18 chrIII:9766341-9766421 6.6e-05 24_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=27 chrI:3501280-3501360 ( 38) CTGCGTCT 1 chrII:11713670-11713750 ( 43) CTGCGTCT 1 chrII:1085052-1085132 ( 29) CTGCGTCT 1 chrV:8428770-8428850 ( 39) CTGCGTCT 1 chrII:15173276-15173356 ( 30) CTGCGTCT 1 chrIV:1623909-1623989 ( 51) CTGCGTCT 1 chrIV:17427050-17427130 ( 52) CTGCGTCT 1 chrIV:6156982-6157062 ( 22) CTGCGTCT 1 chrI:12877174-12877254 ( 47) CTGCGTCT 1 chrI:11188231-11188311 ( 29) CTGCGTCT 1 chrIII:3220475-3220555 ( 23) CTGCGTCT 1 chrII:3209401-3209481 ( 68) CTGCGTCT 1 chrII:2649161-2649241 ( 58) CTGCGTCT 1 chrIV:813520-813600 ( 47) CTGCGTCT 1 chrII:15190212-15190292 ( 37) CTGCGTCT 1 chrX:826060-826140 ( 20) CTGCGTCT 1 chrII:2962688-2962768 ( 37) CTGCGTCT 1 chrII:5544291-5544371 ( 1) CTGCGTCT 1 chrII:13338095-13338175 ( 57) CTGCGTCT 1 chrIII:2089627-2089707 ( 19) CTGCGTCT 1 chrII:347856-347936 ( 58) CTGCGTCT 1 chrIV:14837061-14837141 ( 13) CTGCGTCT 1 chrII:4456194-4456274 ( 39) CTGTGTCT 1 chrIV:9260480-9260560 ( 61) CTGTGTCT 1 chrIII:5639979-5640059 ( 66) CTGTGTCT 1 chrIII:6402487-6402567 ( 55) CTGCCTCT 1 chrIII:9766341-9766421 ( 25) CTGTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 4.9e-022 -1140 207 -1140 -1140 -1140 -1140 -1140 184 -1140 -1140 216 -1140 -1140 184 -1140 -91 -1140 -168 205 -1140 -1140 -1140 -1140 184 -1140 207 -1140 -1140 -1140 -1140 -1140 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.9e-022 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.851852 0.000000 0.148148 0.000000 0.074074 0.925926 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 12.43 secs. ******************************************************************************** ******************************************************************************** MOTIF RMRCGCGC MEME-3 width = 8 sites = 57 llr = 434 E-value = 8.6e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif RMRCGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6742::3: pos.-specific C :316:a:a probability G 4:5:a:7: matrix T :::2:::: bits 2.2 ** * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 **** Entropy 1.1 ** **** (11.0 bits) 0.9 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGCGCGC consensus GCAT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMRCGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20402979-20403059 26 1.02e-05 ATTCAGAGAA AAGCGCGC TTGTTTTTCA chrV:18895149-18895229 20 1.02e-05 AAAAATCCGG AAGCGCGC CTTGGACTTT chrIII:13152829-13152909 49 1.02e-05 GCCGCGAAGC AAGCGCGC TCCACTGTAC chrV:13591674-13591754 10 1.02e-05 AAGGGTGGT AAGCGCGC TCCGTTGCAC chrX:15725138-15725218 42 1.91e-05 GCGCGAAAAA GAGCGCGC GGAATCGAGA chrIV:5160334-5160414 51 1.91e-05 CTTGTCAATG GAGCGCGC TTACGCAGCT chrIII:491255-491335 52 1.91e-05 CGTGCcggtg gagcgcgc ttgcattttt chrV:11733652-11733732 34 1.91e-05 ATTGTCATTG GAGCGCGC TTTCCCCAAC chrI:973162-973242 42 1.91e-05 GTGGGAGAGA GAGCGCGC GAGACGGAGA chrIV:4184937-4185017 62 3.10e-05 CTCGACGAGT AAACGCGC TCCATTGAAC chrIII:634718-634798 29 3.10e-05 TCTGCACCAG AAACGCGC AAAGCTTCTC chrIV:2349077-2349157 18 3.10e-05 GCACGTCAAG AAACGCGC CAGCAGACTT chrII:1402323-1402403 34 3.10e-05 CACTAACGCA AAACGCGC CAGCAGCCAC chrV:20704137-20704217 14 5.06e-05 ACGATAAACA ACGCGCGC TGGCGGGATA chrII:12778515-12778595 8 5.87e-05 GGCCATT GCGCGCGC GCCGCCTCAC chrV:12400841-12400921 33 7.05e-05 ACGTTAAACA AAGCGCAC CTCTGGGATA chrI:663639-663719 62 9.17e-05 CGTGACGGTG GAGCGCAC TTCCCTCCTT chrI:10591688-10591768 36 9.17e-05 CGAGAGGAGT ACACGCGC GAGTGCACTG chrV:5204337-5204417 48 9.17e-05 TGTTGCAATA GAGCGCAC ATGCATTTTC chrII:8041787-8041867 37 9.17e-05 GCGCTAAACA ACACGCGC TACGACACTC chrI:3070207-3070287 53 9.17e-05 GCACTAAACA ACACGCGC ATGCGGAATT chrI:3741268-3741348 29 9.17e-05 GTGTGCGGTG GAGCGCAC TTGCCACACA chrII:7874112-7874192 62 9.17e-05 TGTGTAAACA ACACGCGC TTCGTTCTGC chrIV:16658893-16658973 41 9.17e-05 TTCGAGGTAT GAGCGCAC GCAGGCAGTG chrII:14969445-14969525 67 1.13e-04 GCAGACGAGA AAGTGCGC TCCATT chrIV:1328901-1328981 23 1.13e-04 AAAACAATGC AAGTGCGC TCCATCGCAC chrIV:8869789-8869869 22 1.13e-04 AAGATAAACA GCACGCGC CCGCGTTAAA chrIII:11641494-11641574 46 1.35e-04 AAAATGCGGT GAGTGCGC ATTCTATCGT chrIII:3695554-3695634 65 1.58e-04 AATGCGCAGA GAGAGCGC AGAGAAAA chrIV:813520-813600 22 1.58e-04 AATGCGCAGA GAGAGCGC AGAGAAAAAG chrV:20493716-20493796 73 1.58e-04 ACTTGTGGAC AAACGCAC chrV:9513761-9513841 8 1.95e-04 TAAATCA ACGCGCAC ATAATGCGCC chrX:7791967-7792047 64 1.95e-04 GGGTATTGCG AAATGCGC ACACTCACG chrV:9545431-9545511 65 2.29e-04 TGGCGAGTAT AAAAGCGC TTCGCAGC chrI:3908584-3908664 22 2.29e-04 TGCGCATTGG GCGCGCAC ACCGAATATT chrIV:9534489-9534569 1 2.29e-04 . GAATGCGC GGAAAGTGAT chrIV:5565318-5565398 24 2.51e-04 CTGTGTGTCT ACGTGCGC CGTAAGAGAG chrIV:11521129-11521209 16 2.51e-04 CCGTAATGCC ACGTGCGC ATTGTTTACC chrI:11940125-11940205 49 2.71e-04 GTCGAAACGG GCGTGCGC AAGAGAGAGA chrI:12877174-12877254 34 2.92e-04 TCGTCACTTG ACACGCAC AGTGTCTGCG chrIV:11064068-11064148 37 2.92e-04 CACACGACGA GCGAGCGC ATTTTCAACA chrIII:7074129-7074209 28 3.66e-04 AGAGTAGTGC AACCGCGC TTTATTGAGA chrV:16040614-16040694 47 3.66e-04 CGAATACGCA GAGTGCAC AGTTTTTCTC chrI:13384675-13384755 37 3.66e-04 GGTATTGCGA AACCGCGC GCCGCACATT chrX:5298300-5298380 46 3.66e-04 ATGAGCTAGT AACCGCGC GTTGACGTCA chrI:2586267-2586347 52 4.09e-04 GCAAAACTGG GAGAGCAC AGAGAAGCGA chrII:7640300-7640380 68 4.09e-04 CATCCGTCAG GAGAGCAC AACGG chrII:13083900-13083980 14 4.09e-04 TAAATTTGAA ACAAGCGC CAAAAAGTGG chrII:15255948-15256028 55 4.20e-04 GACGACGTCC GCAAGCGC CCTTTTTCAt chrIII:4332704-4332784 37 4.20e-04 GAAAGAAAAT GCAAGCGC CGCACGGTTT chrI:6166757-6166837 17 4.36e-04 ACACACACAA AAATGCAC CAAAAAGACA chrIV:14656756-14656836 35 4.36e-04 CGTGACGACA AAATGCAC ACTTTTCTCT chrIV:5805620-5805700 18 4.65e-04 TATTTCACTA GAATGCAC GAGAAGACGG chrIII:7359185-7359265 56 4.65e-04 CCAGAGTTGC AAAAGCAC GCCCCGCCCA chrI:7421421-7421501 72 4.91e-04 AGAAGAAGAA GAAAGCAC A chrII:4828220-4828300 28 5.23e-04 AAATTTGAAC ACCCGCGC ATTTTTGTGT chrIV:15021089-15021169 28 5.70e-04 acactcactc acatgcac attgacaAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMRCGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20402979-20403059 1e-05 25_[+3]_47 chrV:18895149-18895229 1e-05 19_[+3]_53 chrIII:13152829-13152909 1e-05 48_[+3]_24 chrV:13591674-13591754 1e-05 9_[+3]_63 chrX:15725138-15725218 1.9e-05 41_[+3]_31 chrIV:5160334-5160414 1.9e-05 50_[+3]_22 chrIII:491255-491335 1.9e-05 51_[+3]_21 chrV:11733652-11733732 1.9e-05 33_[+3]_39 chrI:973162-973242 1.9e-05 41_[+3]_31 chrIV:4184937-4185017 3.1e-05 61_[+3]_11 chrIII:634718-634798 3.1e-05 28_[+3]_44 chrIV:2349077-2349157 3.1e-05 17_[+3]_55 chrII:1402323-1402403 3.1e-05 33_[+3]_39 chrV:20704137-20704217 5.1e-05 13_[+3]_59 chrII:12778515-12778595 5.9e-05 7_[+3]_65 chrV:12400841-12400921 7.1e-05 32_[+3]_40 chrI:663639-663719 9.2e-05 61_[+3]_11 chrI:10591688-10591768 9.2e-05 35_[+3]_37 chrV:5204337-5204417 9.2e-05 47_[+3]_25 chrII:8041787-8041867 9.2e-05 36_[+3]_36 chrI:3070207-3070287 9.2e-05 52_[+3]_20 chrI:3741268-3741348 9.2e-05 28_[+3]_44 chrII:7874112-7874192 9.2e-05 61_[+3]_11 chrIV:16658893-16658973 9.2e-05 40_[+3]_32 chrII:14969445-14969525 0.00011 66_[+3]_6 chrIV:1328901-1328981 0.00011 22_[+3]_50 chrIV:8869789-8869869 0.00011 21_[+3]_51 chrIII:11641494-11641574 0.00013 45_[+3]_27 chrIII:3695554-3695634 0.00016 64_[+3]_8 chrIV:813520-813600 0.00016 21_[+3]_51 chrV:20493716-20493796 0.00016 72_[+3] chrV:9513761-9513841 0.00019 7_[+3]_65 chrX:7791967-7792047 0.00019 63_[+3]_9 chrV:9545431-9545511 0.00023 64_[+3]_8 chrI:3908584-3908664 0.00023 21_[+3]_51 chrIV:9534489-9534569 0.00023 [+3]_72 chrIV:5565318-5565398 0.00025 23_[+3]_49 chrIV:11521129-11521209 0.00025 15_[+3]_57 chrI:11940125-11940205 0.00027 48_[+3]_24 chrI:12877174-12877254 0.00029 33_[+3]_39 chrIV:11064068-11064148 0.00029 36_[+3]_36 chrIII:7074129-7074209 0.00037 27_[+3]_45 chrV:16040614-16040694 0.00037 46_[+3]_26 chrI:13384675-13384755 0.00037 36_[+3]_36 chrX:5298300-5298380 0.00037 45_[+3]_27 chrI:2586267-2586347 0.00041 51_[+3]_21 chrII:7640300-7640380 0.00041 67_[+3]_5 chrII:13083900-13083980 0.00041 13_[+3]_59 chrII:15255948-15256028 0.00042 54_[+3]_18 chrIII:4332704-4332784 0.00042 36_[+3]_36 chrI:6166757-6166837 0.00044 16_[+3]_56 chrIV:14656756-14656836 0.00044 34_[+3]_38 chrIV:5805620-5805700 0.00046 17_[+3]_55 chrIII:7359185-7359265 0.00046 55_[+3]_17 chrI:7421421-7421501 0.00049 71_[+3]_1 chrII:4828220-4828300 0.00052 27_[+3]_45 chrIV:15021089-15021169 0.00057 27_[+3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMRCGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RMRCGCGC width=8 seqs=57 chrV:20402979-20403059 ( 26) AAGCGCGC 1 chrV:18895149-18895229 ( 20) AAGCGCGC 1 chrIII:13152829-13152909 ( 49) AAGCGCGC 1 chrV:13591674-13591754 ( 10) AAGCGCGC 1 chrX:15725138-15725218 ( 42) GAGCGCGC 1 chrIV:5160334-5160414 ( 51) GAGCGCGC 1 chrIII:491255-491335 ( 52) GAGCGCGC 1 chrV:11733652-11733732 ( 34) GAGCGCGC 1 chrI:973162-973242 ( 42) GAGCGCGC 1 chrIV:4184937-4185017 ( 62) AAACGCGC 1 chrIII:634718-634798 ( 29) AAACGCGC 1 chrIV:2349077-2349157 ( 18) AAACGCGC 1 chrII:1402323-1402403 ( 34) AAACGCGC 1 chrV:20704137-20704217 ( 14) ACGCGCGC 1 chrII:12778515-12778595 ( 8) GCGCGCGC 1 chrV:12400841-12400921 ( 33) AAGCGCAC 1 chrI:663639-663719 ( 62) GAGCGCAC 1 chrI:10591688-10591768 ( 36) ACACGCGC 1 chrV:5204337-5204417 ( 48) GAGCGCAC 1 chrII:8041787-8041867 ( 37) ACACGCGC 1 chrI:3070207-3070287 ( 53) ACACGCGC 1 chrI:3741268-3741348 ( 29) GAGCGCAC 1 chrII:7874112-7874192 ( 62) ACACGCGC 1 chrIV:16658893-16658973 ( 41) GAGCGCAC 1 chrII:14969445-14969525 ( 67) AAGTGCGC 1 chrIV:1328901-1328981 ( 23) AAGTGCGC 1 chrIV:8869789-8869869 ( 22) GCACGCGC 1 chrIII:11641494-11641574 ( 46) GAGTGCGC 1 chrIII:3695554-3695634 ( 65) GAGAGCGC 1 chrIV:813520-813600 ( 22) GAGAGCGC 1 chrV:20493716-20493796 ( 73) AAACGCAC 1 chrV:9513761-9513841 ( 8) ACGCGCAC 1 chrX:7791967-7792047 ( 64) AAATGCGC 1 chrV:9545431-9545511 ( 65) AAAAGCGC 1 chrI:3908584-3908664 ( 22) GCGCGCAC 1 chrIV:9534489-9534569 ( 1) GAATGCGC 1 chrIV:5565318-5565398 ( 24) ACGTGCGC 1 chrIV:11521129-11521209 ( 16) ACGTGCGC 1 chrI:11940125-11940205 ( 49) GCGTGCGC 1 chrI:12877174-12877254 ( 34) ACACGCAC 1 chrIV:11064068-11064148 ( 37) GCGAGCGC 1 chrIII:7074129-7074209 ( 28) AACCGCGC 1 chrV:16040614-16040694 ( 47) GAGTGCAC 1 chrI:13384675-13384755 ( 37) AACCGCGC 1 chrX:5298300-5298380 ( 46) AACCGCGC 1 chrI:2586267-2586347 ( 52) GAGAGCAC 1 chrII:7640300-7640380 ( 68) GAGAGCAC 1 chrII:13083900-13083980 ( 14) ACAAGCGC 1 chrII:15255948-15256028 ( 55) GCAAGCGC 1 chrIII:4332704-4332784 ( 37) GCAAGCGC 1 chrI:6166757-6166837 ( 17) AAATGCAC 1 chrIV:14656756-14656836 ( 35) AAATGCAC 1 chrIV:5805620-5805700 ( 18) GAATGCAC 1 chrIII:7359185-7359265 ( 56) AAAAGCAC 1 chrI:7421421-7421501 ( 72) GAAAGCAC 1 chrII:4828220-4828300 ( 28) ACCCGCGC 1 chrIV:15021089-15021169 ( 28) ACATGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMRCGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 8.6e-007 111 -1248 97 -1248 136 49 -1248 -1248 63 -176 123 -1248 -43 128 -1248 -29 -1248 -1248 216 -1248 -1248 207 -1248 -1248 28 -1248 161 -1248 -1248 207 -1248 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMRCGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 8.6e-007 0.561404 0.000000 0.438596 0.000000 0.666667 0.333333 0.000000 0.000000 0.403509 0.070175 0.526316 0.000000 0.192982 0.578947 0.000000 0.228070 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.315789 0.000000 0.684211 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMRCGCGC MEME-3 regular expression -------------------------------------------------------------------------------- [AG][AC][GA][CT]GC[GA]C -------------------------------------------------------------------------------- Time 16.03 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCTCTCK MEME-4 width = 8 sites = 70 llr = 502 E-value = 1.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCTCTCK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C 6:8:8:91 probability G :1::::14 matrix T 472a2a:6 bits 2.2 1.9 * * 1.7 * * 1.5 **** Relative 1.3 ***** Entropy 1.1 * ***** (10.3 bits) 0.9 * ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus T T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3501280-3501360 1 1.94e-05 . ctctctct ttttctctat chrIV:8232620-8232700 25 1.94e-05 GTTtctctct ctctctct ttctcgttct chrI:5589623-5589703 21 1.94e-05 CTGCGCCTCA CTCTCTCT TCATCAAGAC chrI:12179537-12179617 1 1.94e-05 . ctctctct ctcctctACG chrIV:14622348-14622428 3 1.94e-05 ct ctctctct cttcgcacgc chrI:2024740-2024820 73 1.94e-05 ACCATCTATt ctctctct chrII:7090258-7090338 24 1.94e-05 AGAACTGCTG CTCTCTCT TTTTCACACG chrI:10839151-10839231 22 1.94e-05 CTCTCTCTCT CTCTCTCT TTTTGGAAAA chrIII:4456768-4456848 42 1.94e-05 ctctctctac ctctctct ctctctctct chrX:12200699-12200779 49 1.94e-05 TCTCGATTTC CTCTCTCT TTTTTTCAAT chrIV:5561536-5561616 7 1.94e-05 ctctct ctctctct ctctctTTTT chrII:7593384-7593464 57 3.51e-05 GTCGCCGTTG CTCTCTCG TCTCCGCGCA chrI:11188231-11188311 5 3.51e-05 ATTG CTCTCTCG TTCCCATGTA chrIII:3220475-3220555 47 3.51e-05 TCACCACACA CTCTCTCG CCGCTTCTAA chrII:2962688-2962768 59 3.51e-05 TGTCGTCATG CTCTCTCG TCAGGGCAAT chrI:8962062-8962142 3 3.51e-05 TA CTCTCTCG CTCCCGGGTC chrX:5298300-5298380 11 3.51e-05 TCTGCGGCAG CTCTCTCG TTCACTCCTC chrIV:14837061-14837141 35 3.51e-05 CTTCTCTACA CTCTCTCG TAGTCTCTAC chrX:12899283-12899363 4 5.78e-05 TCC TTCTCTCT GAGGCCTATG chrI:4941284-4941364 48 5.78e-05 GCCCCCTGGG TTCTCTCT GTGTGCATCG chrIV:1623909-1623989 60 5.78e-05 TCTGCGTCTC TTCTCTCT CACACACATT chrIII:9766341-9766421 11 5.78e-05 TTCCAtctcc ttctctct cactgtctgt chrI:1049260-1049340 42 7.61e-05 GTTTCTCTTT TTCTCTCG CCACTCTCTC chrIV:2776087-2776167 33 7.61e-05 TTGAGCCGTT TTCTCTCG CCACACTCTC chrIV:14786889-14786969 66 7.61e-05 TTTCGTATGA TTCTCTCG TTTTTAT chrIII:482871-482951 21 7.61e-05 AAATGTCATT TTCTCTCG AAAATCGGCC chrII:3209401-3209481 59 9.89e-05 ATTCTATGTT CTTTCTCT CCTGCGTCTA chrIII:4317177-4317257 3 9.89e-05 CT CTTTCTCT ATTCTATCCC chrIII:8229659-8229739 40 1.35e-04 AGTCGGTGTG CACTCTCT TGCTTTTCCT chrIII:491255-491335 30 1.35e-04 CTGCGCTTCA CACTCTCT AACACGTGCc chrX:16704247-16704327 64 1.35e-04 GACTGTCGCG CACTCTCT CATTTTGAC chrII:14810805-14810885 61 1.51e-04 AGTGCTCCAC CGCTCTCT TTTTTTTGCT chrIII:8490430-8490510 42 1.78e-04 AGTTGTTTAG CGCTCTCG TACGTAGTCC chrV:8663163-8663243 37 2.28e-04 CCGCTCTGTT TTTTCTCT GATCCTCTTC chrII:386119-386199 67 2.28e-04 GTACTTTTAT TTTTCTCT CCATTT chrIV:14656756-14656836 73 2.28e-04 TATTTGCATC TTTTCTCT chrIV:5369030-5369110 34 3.05e-04 TTCTCACACA CTCTTTCG CCGTCATTTC chrII:15173276-15173356 62 3.05e-04 GATTTCCCCT TTTTCTCG CACATGCTGT chrII:6928572-6928652 31 3.05e-04 TGTGTCGTGT TACTCTCT AACTCTCTTC chrV:16040614-16040694 58 3.05e-04 AGTGCACAGT TTTTCTCG GTCACTCTGC chrII:15190212-15190292 63 3.05e-04 TTTCCACTCT TTTTCTCG TGTCGCAAGG chrX:13502496-13502576 33 3.23e-04 GGCATGCTCA TGCTCTCT ACATGGCTTT chrV:1943650-1943730 7 3.23e-04 GCTCGC TGCTCTCT TCTCCACGTC chrX:9999319-9999399 3 3.23e-04 TA TGCTCTCT TCAGTGTCGT chrIV:5565318-5565398 10 3.59e-04 ATTGAATGT CTCTCTGT GTGTCTACGT chrIV:1739079-1739159 4 3.73e-04 TAA TGCTCTCG CCACTCTCAT chrIII:12369669-12369749 53 3.73e-04 GTGTCGCCGC TGCTCTCG CGCGATTGCG chrIII:6402487-6402567 1 4.15e-04 . TTCTTTCT TCATTCACCC chrII:8041787-8041867 71 4.15e-04 AATTCTGCGC CTCTCTGG AG chrIV:11125390-11125470 36 4.15e-04 CTCACTTTGC CTCTCTGG CCAATCGACG chrV:6630935-6631015 59 4.34e-04 GTGATTGAAT TTCTCTCC AATTTCCGAG chrII:11713670-11713750 5 4.77e-04 AAAG CATTCTCT GTGATAAATG chrI:9114050-9114130 17 4.77e-04 ATAACATTTT CATTCTCT CATCTCCTAC chrII:626102-626182 51 5.34e-04 GGAGGAGGTC TTCTCTGT GTGAGTGGGG chrIV:5805620-5805700 52 5.92e-04 GTCGCCGCTC TTCTCTGG CTCCCCTCAA chrIV:12651705-12651785 26 5.92e-04 CTGTTTCTTC CTTTTTCT GTCATCTTCC chrIII:4113763-4113843 40 5.92e-04 ACACGGAGCT CTTTTTCT TTCATCTTCG chrIV:6514878-6514958 45 5.92e-04 TGAGTCTTTC CTTTTTCT CCAAGCATTT chrIII:7090736-7090816 28 6.79e-04 CGTCTAATCT CTTTTTCG AAAGCTCAAA chrII:12778515-12778595 25 7.35e-04 CGCCGCCTCA CACTCTCC GTGCGCGCCT chrX:2819093-2819173 42 7.35e-04 AGCAAGTACG CACTCTCC ATTTCCTGTG chrI:6358549-6358629 52 7.35e-04 TGTGTTAGCG CACTCTCC GTGCACTATG chrI:9110935-9111015 28 8.06e-04 AAGTGTCTGG CGCTCTCC AAGCGCTGTG chrII:15255948-15256028 73 8.06e-04 CCTTTTTCAt ctttctgt chrIII:634718-634798 54 8.06e-04 CTCGTTTGCG CACTTTCG GTGCGTTGGC chrIV:7632678-7632758 62 8.06e-04 GGTGTTTGCA CACTTTCG TAAGCAATCA chrIV:7619495-7619575 39 8.38e-04 GCGGGGCCTC CGCTTTCG ATCAGCTTGC chrX:4818422-4818502 61 9.04e-04 CAATGCAGAT TTTTTTCT TTTTCACTAT chrX:10566907-10566987 19 9.04e-04 TGATTCATAG TTTTTTCT TTGCCTGCAG chrI:4908218-4908298 48 1.69e-03 CTAGTGTCTC TTCTCTTG AGTACACTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3501280-3501360 1.9e-05 [+4]_72 chrIV:8232620-8232700 1.9e-05 24_[+4]_48 chrI:5589623-5589703 1.9e-05 20_[+4]_52 chrI:12179537-12179617 1.9e-05 [+4]_72 chrIV:14622348-14622428 1.9e-05 2_[+4]_70 chrI:2024740-2024820 1.9e-05 72_[+4] chrII:7090258-7090338 1.9e-05 23_[+4]_49 chrI:10839151-10839231 1.9e-05 21_[+4]_51 chrIII:4456768-4456848 1.9e-05 41_[+4]_31 chrX:12200699-12200779 1.9e-05 48_[+4]_24 chrIV:5561536-5561616 1.9e-05 6_[+4]_66 chrII:7593384-7593464 3.5e-05 56_[+4]_16 chrI:11188231-11188311 3.5e-05 4_[+4]_68 chrIII:3220475-3220555 3.5e-05 46_[+4]_26 chrII:2962688-2962768 3.5e-05 58_[+4]_14 chrI:8962062-8962142 3.5e-05 2_[+4]_70 chrX:5298300-5298380 3.5e-05 10_[+4]_62 chrIV:14837061-14837141 3.5e-05 34_[+4]_38 chrX:12899283-12899363 5.8e-05 3_[+4]_69 chrI:4941284-4941364 5.8e-05 47_[+4]_25 chrIV:1623909-1623989 5.8e-05 59_[+4]_13 chrIII:9766341-9766421 5.8e-05 10_[+4]_62 chrI:1049260-1049340 7.6e-05 41_[+4]_31 chrIV:2776087-2776167 7.6e-05 32_[+4]_40 chrIV:14786889-14786969 7.6e-05 65_[+4]_7 chrIII:482871-482951 7.6e-05 20_[+4]_52 chrII:3209401-3209481 9.9e-05 58_[+4]_14 chrIII:4317177-4317257 9.9e-05 2_[+4]_70 chrIII:8229659-8229739 0.00014 39_[+4]_33 chrIII:491255-491335 0.00014 29_[+4]_43 chrX:16704247-16704327 0.00014 63_[+4]_9 chrII:14810805-14810885 0.00015 60_[+4]_12 chrIII:8490430-8490510 0.00018 41_[+4]_31 chrV:8663163-8663243 0.00023 36_[+4]_36 chrII:386119-386199 0.00023 66_[+4]_6 chrIV:14656756-14656836 0.00023 72_[+4] chrIV:5369030-5369110 0.00031 33_[+4]_39 chrII:15173276-15173356 0.00031 61_[+4]_11 chrII:6928572-6928652 0.00031 30_[+4]_42 chrV:16040614-16040694 0.00031 57_[+4]_15 chrII:15190212-15190292 0.00031 62_[+4]_10 chrX:13502496-13502576 0.00032 32_[+4]_40 chrV:1943650-1943730 0.00032 6_[+4]_66 chrX:9999319-9999399 0.00032 2_[+4]_70 chrIV:5565318-5565398 0.00036 9_[+4]_63 chrIV:1739079-1739159 0.00037 3_[+4]_69 chrIII:12369669-12369749 0.00037 52_[+4]_20 chrIII:6402487-6402567 0.00041 [+4]_72 chrII:8041787-8041867 0.00041 70_[+4]_2 chrIV:11125390-11125470 0.00041 35_[+4]_37 chrV:6630935-6631015 0.00043 58_[+4]_14 chrII:11713670-11713750 0.00048 4_[+4]_68 chrI:9114050-9114130 0.00048 16_[+4]_56 chrII:626102-626182 0.00053 50_[+4]_22 chrIV:5805620-5805700 0.00059 51_[+4]_21 chrIV:12651705-12651785 0.00059 25_[+4]_47 chrIII:4113763-4113843 0.00059 39_[+4]_33 chrIV:6514878-6514958 0.00059 44_[+4]_28 chrIII:7090736-7090816 0.00068 27_[+4]_45 chrII:12778515-12778595 0.00073 24_[+4]_48 chrX:2819093-2819173 0.00073 41_[+4]_31 chrI:6358549-6358629 0.00073 51_[+4]_21 chrI:9110935-9111015 0.00081 27_[+4]_45 chrII:15255948-15256028 0.00081 72_[+4] chrIII:634718-634798 0.00081 53_[+4]_19 chrIV:7632678-7632758 0.00081 61_[+4]_11 chrIV:7619495-7619575 0.00084 38_[+4]_34 chrX:4818422-4818502 0.0009 60_[+4]_12 chrX:10566907-10566987 0.0009 18_[+4]_54 chrI:4908218-4908298 0.0017 47_[+4]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCTCTCK width=8 seqs=70 chrI:3501280-3501360 ( 1) CTCTCTCT 1 chrIV:8232620-8232700 ( 25) CTCTCTCT 1 chrI:5589623-5589703 ( 21) CTCTCTCT 1 chrI:12179537-12179617 ( 1) CTCTCTCT 1 chrIV:14622348-14622428 ( 3) CTCTCTCT 1 chrI:2024740-2024820 ( 73) CTCTCTCT 1 chrII:7090258-7090338 ( 24) CTCTCTCT 1 chrI:10839151-10839231 ( 22) CTCTCTCT 1 chrIII:4456768-4456848 ( 42) CTCTCTCT 1 chrX:12200699-12200779 ( 49) CTCTCTCT 1 chrIV:5561536-5561616 ( 7) CTCTCTCT 1 chrII:7593384-7593464 ( 57) CTCTCTCG 1 chrI:11188231-11188311 ( 5) CTCTCTCG 1 chrIII:3220475-3220555 ( 47) CTCTCTCG 1 chrII:2962688-2962768 ( 59) CTCTCTCG 1 chrI:8962062-8962142 ( 3) CTCTCTCG 1 chrX:5298300-5298380 ( 11) CTCTCTCG 1 chrIV:14837061-14837141 ( 35) CTCTCTCG 1 chrX:12899283-12899363 ( 4) TTCTCTCT 1 chrI:4941284-4941364 ( 48) TTCTCTCT 1 chrIV:1623909-1623989 ( 60) TTCTCTCT 1 chrIII:9766341-9766421 ( 11) TTCTCTCT 1 chrI:1049260-1049340 ( 42) TTCTCTCG 1 chrIV:2776087-2776167 ( 33) TTCTCTCG 1 chrIV:14786889-14786969 ( 66) TTCTCTCG 1 chrIII:482871-482951 ( 21) TTCTCTCG 1 chrII:3209401-3209481 ( 59) CTTTCTCT 1 chrIII:4317177-4317257 ( 3) CTTTCTCT 1 chrIII:8229659-8229739 ( 40) CACTCTCT 1 chrIII:491255-491335 ( 30) CACTCTCT 1 chrX:16704247-16704327 ( 64) CACTCTCT 1 chrII:14810805-14810885 ( 61) CGCTCTCT 1 chrIII:8490430-8490510 ( 42) CGCTCTCG 1 chrV:8663163-8663243 ( 37) TTTTCTCT 1 chrII:386119-386199 ( 67) TTTTCTCT 1 chrIV:14656756-14656836 ( 73) TTTTCTCT 1 chrIV:5369030-5369110 ( 34) CTCTTTCG 1 chrII:15173276-15173356 ( 62) TTTTCTCG 1 chrII:6928572-6928652 ( 31) TACTCTCT 1 chrV:16040614-16040694 ( 58) TTTTCTCG 1 chrII:15190212-15190292 ( 63) TTTTCTCG 1 chrX:13502496-13502576 ( 33) TGCTCTCT 1 chrV:1943650-1943730 ( 7) TGCTCTCT 1 chrX:9999319-9999399 ( 3) TGCTCTCT 1 chrIV:5565318-5565398 ( 10) CTCTCTGT 1 chrIV:1739079-1739159 ( 4) TGCTCTCG 1 chrIII:12369669-12369749 ( 53) TGCTCTCG 1 chrIII:6402487-6402567 ( 1) TTCTTTCT 1 chrII:8041787-8041867 ( 71) CTCTCTGG 1 chrIV:11125390-11125470 ( 36) CTCTCTGG 1 chrV:6630935-6631015 ( 59) TTCTCTCC 1 chrII:11713670-11713750 ( 5) CATTCTCT 1 chrI:9114050-9114130 ( 17) CATTCTCT 1 chrII:626102-626182 ( 51) TTCTCTGT 1 chrIV:5805620-5805700 ( 52) TTCTCTGG 1 chrIV:12651705-12651785 ( 26) CTTTTTCT 1 chrIII:4113763-4113843 ( 40) CTTTTTCT 1 chrIV:6514878-6514958 ( 45) CTTTTTCT 1 chrIII:7090736-7090816 ( 28) CTTTTTCG 1 chrII:12778515-12778595 ( 25) CACTCTCC 1 chrX:2819093-2819173 ( 42) CACTCTCC 1 chrI:6358549-6358629 ( 52) CACTCTCC 1 chrI:9110935-9111015 ( 28) CGCTCTCC 1 chrII:15255948-15256028 ( 73) CTTTCTGT 1 chrIII:634718-634798 ( 54) CACTTTCG 1 chrIV:7632678-7632758 ( 62) CACTTTCG 1 chrIV:7619495-7619575 ( 39) CGCTTTCG 1 chrX:4818422-4818502 ( 61) TTTTTTCT 1 chrX:10566907-10566987 ( 19) TTTTTTCT 1 chrI:4908218-4908298 ( 48) TTCTCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.40933 E= 1.2e-004 -1277 137 -1277 47 -73 -1277 -80 136 -1277 167 -1277 -20 -1277 -1277 -1277 184 -1277 183 -1277 -83 -1277 -1277 -1277 184 -1277 192 -138 -428 -1277 -173 73 100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 1.2e-004 0.000000 0.614286 0.000000 0.385714 0.157143 0.000000 0.128571 0.714286 0.000000 0.757143 0.000000 0.242857 0.000000 0.000000 0.000000 1.000000 0.000000 0.842857 0.000000 0.157143 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.085714 0.014286 0.000000 0.071429 0.371429 0.557143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCK MEME-4 regular expression -------------------------------------------------------------------------------- [CT]T[CT]TCTC[TG] -------------------------------------------------------------------------------- Time 19.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GTMCGCAA MEME-5 width = 8 sites = 17 llr = 172 E-value = 2.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::6:::aa pos.-specific C ::4a:a:: probability G a2::a::: matrix T :8:::::: bits 2.2 * *** 1.9 * ***** 1.7 * ***** 1.5 * ***** Relative 1.3 ** ***** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTACGCAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1964994-1965074 4 1.39e-05 CAG GTACGCAA ACAACAAATT chrV:1196152-1196232 25 1.39e-05 AAAATGCAAA GTACGCAA ACACATTGCG chrIII:6489081-6489161 17 1.39e-05 TGGGTGTCGG GTACGCAA ATACTGCAAA chrIV:12029949-12030029 35 1.39e-05 TTGTGCATTG GTACGCAA TCTTGTGTAC chrV:18689834-18689914 51 1.39e-05 CCAGGAGGCA GTACGCAA ACACCACACC chrV:128030-128110 64 1.39e-05 TCAGTGTTTG GTACGCAA ACACCGACC chrIV:14656756-14656836 13 1.39e-05 TGTGTGTTTT GTACGCAA ACACCGTGAC chrII:13083900-13083980 36 1.39e-05 AAGTGGCGGT GTACGCAA GCGCCAGAGC chrIII:6383353-6383433 7 2.67e-05 ATGCGA GTCCGCAA TAGTCCGTCG chrII:13477368-13477448 50 2.67e-05 CATTTACTGA GTCCGCAA ACACCATGAC chrII:386119-386199 25 2.67e-05 CGACATTCAA GTCCGCAA TTGCGCGTCA chrII:2059140-2059220 30 2.67e-05 GTCTGCAAAA GTCCGCAA TCTTCGCACG chrX:15725138-15725218 1 2.67e-05 . GTCCGCAA TATGTCGTCA chrV:20493716-20493796 34 2.67e-05 TCGTAACGAA GTCCGCAA ACACTGTTGT chrX:4818422-4818502 46 3.79e-05 TCTGCGCATC GGACGCAA TGCAGATTTT chrII:14969445-14969525 31 3.79e-05 TTTCCGCTCT GGACGCAA ACACCATCAC chrX:14513617-14513697 43 3.79e-05 GTGCTGGGAT GGACGCAA AAGAGCGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1964994-1965074 1.4e-05 3_[+5]_69 chrV:1196152-1196232 1.4e-05 24_[+5]_48 chrIII:6489081-6489161 1.4e-05 16_[+5]_56 chrIV:12029949-12030029 1.4e-05 34_[+5]_38 chrV:18689834-18689914 1.4e-05 50_[+5]_22 chrV:128030-128110 1.4e-05 63_[+5]_9 chrIV:14656756-14656836 1.4e-05 12_[+5]_60 chrII:13083900-13083980 1.4e-05 35_[+5]_37 chrIII:6383353-6383433 2.7e-05 6_[+5]_66 chrII:13477368-13477448 2.7e-05 49_[+5]_23 chrII:386119-386199 2.7e-05 24_[+5]_48 chrII:2059140-2059220 2.7e-05 29_[+5]_43 chrX:15725138-15725218 2.7e-05 [+5]_72 chrV:20493716-20493796 2.7e-05 33_[+5]_39 chrX:4818422-4818502 3.8e-05 45_[+5]_27 chrII:14969445-14969525 3.8e-05 30_[+5]_42 chrX:14513617-14513697 3.8e-05 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTMCGCAA width=8 seqs=17 chrX:1964994-1965074 ( 4) GTACGCAA 1 chrV:1196152-1196232 ( 25) GTACGCAA 1 chrIII:6489081-6489161 ( 17) GTACGCAA 1 chrIV:12029949-12030029 ( 35) GTACGCAA 1 chrV:18689834-18689914 ( 51) GTACGCAA 1 chrV:128030-128110 ( 64) GTACGCAA 1 chrIV:14656756-14656836 ( 13) GTACGCAA 1 chrII:13083900-13083980 ( 36) GTACGCAA 1 chrIII:6383353-6383433 ( 7) GTCCGCAA 1 chrII:13477368-13477448 ( 50) GTCCGCAA 1 chrII:386119-386199 ( 25) GTCCGCAA 1 chrII:2059140-2059220 ( 30) GTCCGCAA 1 chrX:15725138-15725218 ( 1) GTCCGCAA 1 chrV:20493716-20493796 ( 34) GTCCGCAA 1 chrX:4818422-4818502 ( 46) GGACGCAA 1 chrII:14969445-14969525 ( 31) GGACGCAA 1 chrX:14513617-14513697 ( 43) GGACGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 2.1e-004 -1073 -1073 216 -1073 -1073 -1073 -34 156 132 57 -1073 -1073 -1073 207 -1073 -1073 -1073 -1073 216 -1073 -1073 207 -1073 -1073 194 -1073 -1073 -1073 194 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.1e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.176471 0.823529 0.647059 0.352941 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 regular expression -------------------------------------------------------------------------------- GT[AC]CGCAA -------------------------------------------------------------------------------- Time 22.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:12369669-12369749 6.59e-02 80 chrX:8157265-8157345 1.46e-01 80 chrIV:14837061-14837141 3.51e-03 12_[+2(1.47e-05)]_14_[+4(3.51e-05)]_\ 38 chrX:12669109-12669189 5.21e-01 80 chrX:16704247-16704327 3.62e-03 80 chrI:973162-973242 4.71e-03 [+1(6.98e-05)]_33_[+3(1.91e-05)]_6_\ [+1(7.88e-05)]_17 chrIV:3519537-3519617 9.87e-02 21_[+1(1.05e-05)]_51 chrIV:6514878-6514958 3.03e-01 80 chrII:13016546-13016626 1.35e-02 2_[+1(1.05e-05)]_70 chrX:8159096-8159176 6.50e-01 80 chrIII:482871-482951 2.46e-01 20_[+4(7.61e-05)]_52 chrV:3870528-3870608 7.44e-01 80 chrV:20455808-20455888 2.83e-01 80 chrIII:10628496-10628576 1.67e-02 80 chrIII:8901249-8901329 5.52e-02 67_[+1(6.98e-05)]_5 chrIV:11026812-11026892 5.70e-01 80 chrV:20493716-20493796 4.09e-03 33_[+5(2.67e-05)]_39 chrI:11940125-11940205 4.43e-04 50_[+5(7.51e-05)]_2_[+1(3.43e-05)]_\ 12 chrIV:5561536-5561616 4.39e-02 [+4(1.94e-05)]_[+4(1.94e-05)]_64 chrX:12200699-12200779 1.33e-02 48_[+4(1.94e-05)]_24 chrIII:4456768-4456848 1.43e-02 31_[+4(1.94e-05)]_2_[+4(1.94e-05)]_\ [+4(1.94e-05)]_23 chrV:8535053-8535133 2.84e-01 80 chrI:10839151-10839231 2.43e-03 9_[+4(1.94e-05)]_[+4(1.94e-05)]_55 chrII:347856-347936 8.77e-04 57_[+2(1.47e-05)]_15 chrX:5298300-5298380 3.46e-03 10_[+4(3.51e-05)]_62 chrX:14478365-14478445 4.77e-01 80 chrI:5937074-5937154 3.02e-02 80 chrIV:16658893-16658973 8.23e-03 40_[+3(9.17e-05)]_32 chrIV:1056642-1056722 5.79e-01 80 chrI:10858177-10858257 9.86e-01 80 chrIII:5639979-5640059 1.38e-02 65_[+2(3.19e-05)]_7 chrIII:2089627-2089707 1.69e-03 18_[+2(1.47e-05)]_54 chrV:11733652-11733732 2.52e-02 33_[+3(1.91e-05)]_39 chrII:7874112-7874192 7.59e-03 61_[+3(9.17e-05)]_11 chrI:4908218-4908298 1.92e-01 80 chrII:13338095-13338175 6.75e-02 56_[+2(1.47e-05)]_16 chrI:3741268-3741348 9.71e-02 28_[+3(9.17e-05)]_44 chrI:13384675-13384755 9.15e-02 80 chrV:6630935-6631015 6.11e-01 80 chrII:5544291-5544371 1.21e-02 [+2(1.47e-05)]_72 chrI:4805458-4805538 6.08e-01 80 chrI:9929551-9929631 3.22e-01 80 chrI:8962062-8962142 1.33e-02 2_[+4(3.51e-05)]_70 chrII:2962688-2962768 9.13e-04 36_[+2(1.47e-05)]_14_[+4(3.51e-05)]_\ 14 chrII:13083900-13083980 2.83e-03 35_[+5(1.39e-05)]_37 chrX:14562445-14562525 2.06e-01 80 chrX:9999319-9999399 5.27e-03 80 chrI:11693670-11693750 7.36e-03 47_[+1(1.05e-05)]_25 chrIII:9766341-9766421 4.43e-03 10_[+4(5.78e-05)]_6_[+2(6.58e-05)]_\ 48 chrX:826060-826140 1.00e-01 19_[+2(1.47e-05)]_53 chrII:1402323-1402403 1.80e-02 33_[+3(3.10e-05)]_39 chrV:20704137-20704217 7.43e-03 13_[+3(5.06e-05)]_59 chrIII:4113763-4113843 1.33e-01 80 chrII:15190212-15190292 8.55e-03 36_[+2(1.47e-05)]_36 chrI:9149359-9149439 8.42e-01 80 chrX:10566907-10566987 4.86e-01 80 chrIV:813520-813600 1.37e-05 46_[+2(1.47e-05)]_26 chrIII:6009078-6009158 3.22e-01 80 chrIV:5848133-5848213 4.88e-01 80 chrX:4957437-4957517 1.96e-01 80 chrIII:6352614-6352694 6.55e-01 80 chrIII:4317177-4317257 8.32e-02 2_[+4(9.89e-05)]_70 chrI:13688719-13688799 2.03e-01 80 chrIII:3695554-3695634 1.43e-02 80 chrIV:2349077-2349157 3.17e-02 17_[+3(3.10e-05)]_55 chrII:2649161-2649241 1.99e-03 22_[+1(6.98e-05)]_27_[+2(1.47e-05)]_\ 15 chrIV:11125390-11125470 1.72e-01 80 chrIV:9525129-9525209 8.03e-01 80 chrII:9263923-9264003 3.14e-01 80 chrIII:10035964-10036044 3.35e-01 80 chrIV:8869789-8869869 1.04e-01 80 chrIV:4277863-4277943 5.72e-01 80 chrII:3209401-3209481 4.42e-04 58_[+4(9.89e-05)]_1_[+2(1.47e-05)]_\ 5 chrIII:11641494-11641574 5.79e-02 80 chrIV:2734758-2734838 2.75e-01 80 chrX:910486-910566 1.12e-01 80 chrIII:3220475-3220555 2.01e-03 22_[+2(1.47e-05)]_16_[+4(3.51e-05)]_\ 26 chrIV:1804772-1804852 4.77e-02 14_[+1(1.05e-05)]_58 chrX:2176602-2176682 3.53e-01 80 chrII:8016291-8016371 7.08e-01 80 chrIII:491255-491335 3.90e-03 51_[+3(1.91e-05)]_21 chrI:3070207-3070287 2.26e-02 52_[+3(9.17e-05)]_20 chrI:12164772-12164852 8.13e-02 48_[+1(6.98e-05)]_24 chrV:13591674-13591754 2.82e-02 9_[+3(1.02e-05)]_63 chrV:9425780-9425860 4.27e-02 80 chrIV:14656756-14656836 3.81e-04 12_[+5(1.39e-05)]_60 chrV:128030-128110 4.62e-04 25_[+1(1.05e-05)]_30_[+5(1.39e-05)]_\ 9 chrIV:1328901-1328981 2.67e-02 80 chrV:8302669-8302749 2.37e-01 80 chrIV:11521129-11521209 7.69e-02 80 chrI:10970249-10970329 5.09e-01 80 chrIV:11064068-11064148 6.14e-02 80 chrIII:7115129-7115209 5.32e-01 80 chrIV:14786889-14786969 3.05e-01 65_[+4(7.61e-05)]_7 chrV:1366242-1366322 3.88e-01 80 chrI:11188231-11188311 2.46e-03 4_[+4(3.51e-05)]_16_[+2(1.47e-05)]_\ 44 chrIV:1953309-1953389 9.80e-01 80 chrII:9669121-9669201 1.56e-02 80 chrIV:13272638-13272718 2.63e-02 58_[+1(1.05e-05)]_14 chrII:7836737-7836817 4.82e-01 80 chrII:8041787-8041867 3.08e-03 36_[+3(9.17e-05)]_36 chrIII:96316-96396 5.81e-02 23_[+1(1.05e-05)]_49 chrIII:8229659-8229739 1.09e-01 80 chrII:7090258-7090338 2.06e-03 23_[+4(1.94e-05)]_10_[+4(3.51e-05)]_\ 31 chrX:8160196-8160276 4.00e-01 80 chrI:13161955-13162035 9.51e-01 80 chrV:18689834-18689914 2.17e-02 50_[+5(1.39e-05)]_22 chrX:7811126-7811206 5.64e-02 44_[+1(6.98e-05)]_28 chrIII:7359185-7359265 5.29e-01 80 chrI:2024740-2024820 1.83e-02 72_[+4(1.94e-05)] chrI:12877174-12877254 1.65e-03 46_[+2(1.47e-05)]_26 chrIV:5160334-5160414 5.29e-04 50_[+3(1.91e-05)]_22 chrIV:6294148-6294228 2.36e-01 80 chrV:16040614-16040694 1.79e-02 80 chrX:14513617-14513697 8.28e-03 42_[+5(3.79e-05)]_30 chrIV:10507753-10507833 4.98e-02 80 chrIII:4332704-4332784 2.67e-03 15_[+1(1.05e-05)]_57 chrI:6949391-6949471 5.07e-01 80 chrV:14425267-14425347 4.12e-01 80 chrII:6601175-6601255 1.91e-01 80 chrIV:9534489-9534569 1.66e-01 80 chrI:10438005-10438085 2.32e-01 80 chrII:4828220-4828300 2.52e-02 80 chrIV:6156982-6157062 4.07e-02 21_[+2(1.47e-05)]_51 chrX:7793816-7793896 2.16e-01 80 chrIV:17427050-17427130 1.13e-02 51_[+2(1.47e-05)]_21 chrIV:12029949-12030029 3.60e-02 34_[+5(1.39e-05)]_38 chrV:9128751-9128831 5.26e-01 80 chrV:16499174-16499254 3.27e-01 80 chrIII:13152829-13152909 1.81e-04 23_[+1(1.05e-05)]_17_[+3(1.02e-05)]_\ 24 chrIV:2776087-2776167 8.50e-03 32_[+4(7.61e-05)]_40 chrV:5204337-5204417 8.40e-02 47_[+3(9.17e-05)]_25 chrIV:7632678-7632758 1.55e-02 80 chrI:6358549-6358629 2.67e-01 80 chrIV:15021089-15021169 1.61e-01 80 chrIII:634718-634798 9.40e-03 28_[+3(3.10e-05)]_44 chrX:5210655-5210735 9.89e-02 80 chrIV:9260480-9260560 1.23e-02 60_[+2(3.19e-05)]_12 chrIII:5499106-5499186 6.85e-01 80 chrIV:14622348-14622428 1.76e-02 [+4(1.94e-05)]_72 chrIV:1623909-1623989 1.91e-03 50_[+2(1.47e-05)]_1_[+4(5.78e-05)]_\ 13 chrIV:5089858-5089938 6.45e-01 80 chrX:7791967-7792047 1.51e-01 80 chrV:6095988-6096068 7.86e-01 80 chrI:10591688-10591768 1.48e-02 35_[+3(9.17e-05)]_37 chrII:6928572-6928652 2.79e-01 80 chrI:6166757-6166837 4.20e-02 80 chrX:2819093-2819173 2.80e-02 80 chrI:3908584-3908664 8.32e-02 80 chrX:2596736-2596816 6.98e-01 80 chrII:12778515-12778595 2.07e-02 7_[+3(5.87e-05)]_65 chrV:1943650-1943730 2.32e-01 80 chrII:626102-626182 5.39e-03 14_[+1(1.05e-05)]_58 chrV:3757066-3757146 3.04e-01 20_[+1(6.98e-05)]_52 chrI:7374830-7374910 8.32e-01 80 chrIII:11942820-11942900 9.43e-01 80 chrV:18895149-18895229 2.71e-02 19_[+3(1.02e-05)]_53 chrIII:8029640-8029720 2.16e-01 80 chrIV:7512987-7513067 2.89e-01 80 chrIV:7390292-7390372 4.03e-01 80 chrIII:8490430-8490510 1.69e-01 80 chrV:20402979-20403059 2.09e-03 25_[+3(1.02e-05)]_47 chrX:15725138-15725218 7.46e-05 [+5(2.67e-05)]_33_[+3(1.91e-05)]_8_\ [+1(6.98e-05)]_15 chrII:4456194-4456274 2.71e-02 38_[+2(3.19e-05)]_34 chrIV:5317359-5317439 3.95e-01 80 chrIII:7074129-7074209 9.67e-02 80 chrII:8684093-8684173 8.42e-02 80 chrI:12179537-12179617 2.01e-03 [+4(1.94e-05)]_72 chrII:2059140-2059220 3.85e-02 29_[+5(2.67e-05)]_43 chrV:12400841-12400921 7.46e-02 32_[+3(7.05e-05)]_40 chrIII:7142213-7142293 1.35e-01 80 chrV:14990992-14991072 4.62e-01 80 chrII:15255948-15256028 3.38e-03 50_[+5(2.67e-05)]_22 chrIV:5565318-5565398 2.47e-04 36_[+1(6.98e-05)]_36 chrIII:7090736-7090816 2.96e-01 80 chrII:15173276-15173356 1.57e-02 29_[+2(1.47e-05)]_43 chrIII:6489081-6489161 3.18e-02 16_[+5(1.39e-05)]_56 chrX:7194027-7194107 3.85e-01 80 chrI:5589623-5589703 9.13e-03 20_[+4(1.94e-05)]_52 chrI:9114050-9114130 2.71e-01 80 chrII:386119-386199 3.94e-03 24_[+5(2.67e-05)]_48 chrII:13477368-13477448 2.88e-03 49_[+5(2.67e-05)]_23 chrIII:95116-95196 5.64e-01 80 chrI:663639-663719 3.37e-02 61_[+3(9.17e-05)]_11 chrIII:1591816-1591896 1.80e-01 33_[+1(6.98e-05)]_39 chrV:9513761-9513841 2.31e-01 80 chrIV:5369030-5369110 2.09e-01 80 chrI:9488279-9488359 3.59e-01 80 chrII:14810805-14810885 2.94e-03 23_[+1(6.98e-05)]_49 chrIV:11068477-11068557 2.58e-01 80 chrIV:1739079-1739159 2.45e-01 80 chrV:8428770-8428850 1.91e-02 38_[+2(1.47e-05)]_34 chrIV:8758806-8758886 4.51e-01 80 chrIII:12528169-12528249 1.58e-01 80 chrII:1085052-1085132 4.35e-02 28_[+2(1.47e-05)]_44 chrV:1196152-1196232 4.32e-02 24_[+5(1.39e-05)]_48 chrV:2236005-2236085 1.35e-01 80 chrIV:12651705-12651785 9.70e-02 80 chrV:10661692-10661772 6.53e-01 80 chrV:7575702-7575782 1.93e-01 80 chrI:9110935-9111015 3.45e-02 80 chrIII:7952250-7952330 4.35e-01 80 chrII:11713670-11713750 3.69e-04 42_[+2(1.47e-05)]_30 chrI:11840836-11840916 6.07e-01 80 chrX:7236850-7236930 3.99e-01 80 chrI:7421421-7421501 9.08e-03 80 chrIII:7978850-7978930 2.55e-01 80 chrIV:2052540-2052620 1.90e-03 48_[+1(6.98e-05)]_14_[+5(1.00e-04)]_\ 2 chrIII:6402487-6402567 3.72e-02 54_[+2(4.75e-05)]_18 chrII:7640300-7640380 6.58e-02 80 chrII:10744952-10745032 1.15e-02 80 chrV:7894120-7894200 4.17e-01 80 chrI:13958600-13958680 2.51e-01 80 chrI:2586267-2586347 3.51e-02 80 chrI:1049260-1049340 2.35e-01 41_[+4(7.61e-05)]_31 chrX:13502496-13502576 1.90e-01 80 chrIV:4360662-4360742 3.05e-03 80 chrI:9374712-9374792 2.18e-01 80 chrIV:7619495-7619575 4.02e-01 80 chrII:7593384-7593464 6.55e-02 56_[+4(3.51e-05)]_16 chrIV:4184937-4185017 1.79e-02 61_[+3(3.10e-05)]_11 chrIII:5758850-5758930 1.50e-02 19_[+1(1.05e-05)]_53 chrIII:1037333-1037413 9.35e-03 24_[+3(9.17e-05)]_48 chrII:601445-601525 2.38e-01 80 chrI:4941284-4941364 3.65e-02 47_[+4(5.78e-05)]_25 chrII:6709174-6709254 5.15e-01 80 chrII:3816388-3816468 5.43e-02 69_[+1(3.43e-05)]_3 chrV:9545431-9545511 1.36e-02 80 chrIV:5805620-5805700 2.75e-02 80 chrIII:6383353-6383433 3.58e-02 6_[+5(2.67e-05)]_66 chrIV:1108207-1108287 9.26e-01 80 chrV:19190233-19190313 8.56e-01 80 chrV:4063710-4063790 2.57e-01 80 chrV:8663163-8663243 5.61e-02 80 chrIV:8232620-8232700 2.21e-02 18_[+4(1.94e-05)]_54 chrIV:15814199-15814279 3.71e-01 80 chrIV:12209142-12209222 9.03e-02 80 chrV:19001135-19001215 2.60e-01 80 chrX:1439098-1439178 6.67e-01 80 chrIII:3671141-3671221 1.29e-01 80 chrI:3501280-3501360 2.55e-03 [+4(1.94e-05)]_18_[+4(7.61e-05)]_3_\ [+2(1.47e-05)]_35 chrII:14969445-14969525 7.72e-04 30_[+5(3.79e-05)]_42 chrV:11082605-11082685 2.85e-02 80 chrV:12518869-12518949 6.35e-02 80 chrX:12899283-12899363 1.03e-01 3_[+4(5.78e-05)]_69 chrIII:5949990-5950070 1.41e-01 80 chrV:13627289-13627369 4.75e-01 80 chrX:1964994-1965074 1.13e-03 3_[+5(1.39e-05)]_49_[+1(1.05e-05)]_\ 12 chrX:4818422-4818502 2.15e-02 45_[+5(3.79e-05)]_27 chrI:9962075-9962155 2.67e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************