******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/spr-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:10117621-10117701 1.0000 80 chrII:5633598-5633678 1.0000 80 chrII:11719705-11719785 1.0000 80 chrII:4790878-4790958 1.0000 80 chrII:15119688-15119768 1.0000 80 chrII:11720957-11721037 1.0000 80 chrII:7081955-7082035 1.0000 80 chrX:4494597-4494677 1.0000 80 chrV:5780868-5780948 1.0000 80 chrIII:13605095-13605175 1.0000 80 chrIV:9530904-9530984 1.0000 80 chrIV:3311395-3311475 1.0000 80 chrX:14808861-14808941 1.0000 80 chrX:4517127-4517207 1.0000 80 chrV:5050343-5050423 1.0000 80 chrV:2131001-2131081 1.0000 80 chrII:7003045-7003125 1.0000 80 chrIV:2315689-2315769 1.0000 80 chrIV:11080999-11081079 1.0000 80 chrII:4710303-4710383 1.0000 80 chrII:15119891-15119971 1.0000 80 chrIII:4015603-4015683 1.0000 80 chrX:4524843-4524923 1.0000 80 chrI:2878634-2878714 1.0000 80 chrIV:13035506-13035586 1.0000 80 chrV:10887431-10887511 1.0000 80 chrV:18576299-18576379 1.0000 80 chrII:12787926-12788006 1.0000 80 chrIII:12235107-12235187 1.0000 80 chrII:5353816-5353896 1.0000 80 chrX:4522447-4522527 1.0000 80 chrIV:11955844-11955924 1.0000 80 chrIV:6792491-6792571 1.0000 80 chrX:8608888-8608968 1.0000 80 chrV:13090450-13090530 1.0000 80 chrV:6559737-6559817 1.0000 80 chrII:8441684-8441764 1.0000 80 chrV:12510133-12510213 1.0000 80 chrIII:11921908-11921988 1.0000 80 chrIV:7754135-7754215 1.0000 80 chrX:4495411-4495491 1.0000 80 chrX:14476846-14476926 1.0000 80 chrX:12663757-12663837 1.0000 80 chrV:5780090-5780170 1.0000 80 chrIV:16950481-16950561 1.0000 80 chrIV:15931265-15931345 1.0000 80 chrI:14875468-14875548 1.0000 80 chrIII:7495223-7495303 1.0000 80 chrX:11603331-11603411 1.0000 80 chrIV:10111067-10111147 1.0000 80 chrIV:10216985-10217065 1.0000 80 chrIV:10934043-10934123 1.0000 80 chrX:13764786-13764866 1.0000 80 chrI:14946698-14946778 1.0000 80 chrIV:2658980-2659060 1.0000 80 chrII:10707814-10707894 1.0000 80 chrV:727687-727767 1.0000 80 chrV:8415195-8415275 1.0000 80 chrX:11924328-11924408 1.0000 80 chrV:20847893-20847973 1.0000 80 chrII:10542838-10542918 1.0000 80 chrII:14617092-14617172 1.0000 80 chrI:4769675-4769755 1.0000 80 chrIII:11830592-11830672 1.0000 80 chrI:7015713-7015793 1.0000 80 chrII:9739080-9739160 1.0000 80 chrX:11645826-11645906 1.0000 80 chrIII:13072045-13072125 1.0000 80 chrV:6225187-6225267 1.0000 80 chrV:14354499-14354579 1.0000 80 chrII:8603743-8603823 1.0000 80 chrIV:13882751-13882831 1.0000 80 chrI:9100176-9100256 1.0000 80 chrIII:13544772-13544852 1.0000 80 chrII:1238099-1238179 1.0000 80 chrX:4520099-4520179 1.0000 80 chrX:6253902-6253982 1.0000 80 chrIII:10214629-10214709 1.0000 80 chrV:19520320-19520400 1.0000 80 chrX:14478861-14478941 1.0000 80 chrIII:2811572-2811652 1.0000 80 chrV:9318221-9318301 1.0000 80 chrV:5667486-5667566 1.0000 80 chrIV:7083418-7083498 1.0000 80 chrV:15065385-15065465 1.0000 80 chrX:1909540-1909620 1.0000 80 chrX:4193161-4193241 1.0000 80 chrI:10776233-10776313 1.0000 80 chrV:9734269-9734349 1.0000 80 chrI:4911588-4911668 1.0000 80 chrII:12059597-12059677 1.0000 80 chrV:12549856-12549936 1.0000 80 chrII:9113940-9114020 1.0000 80 chrIV:2639761-2639841 1.0000 80 chrV:16622085-16622165 1.0000 80 chrX:4961139-4961219 1.0000 80 chrV:12331962-12332042 1.0000 80 chrII:13159901-13159981 1.0000 80 chrX:12876981-12877061 1.0000 80 chrI:513959-514039 1.0000 80 chrI:11584803-11584883 1.0000 80 chrI:8867905-8867985 1.0000 80 chrI:852163-852243 1.0000 80 chrIII:10809056-10809136 1.0000 80 chrIII:9783367-9783447 1.0000 80 chrII:4755784-4755864 1.0000 80 chrI:12654730-12654810 1.0000 80 chrX:12655610-12655690 1.0000 80 chrV:5330137-5330217 1.0000 80 chrV:103136-103216 1.0000 80 chrIII:2032596-2032676 1.0000 80 chrIII:5230662-5230742 1.0000 80 chrI:8866850-8866930 1.0000 80 chrIV:5085579-5085659 1.0000 80 chrIV:16503742-16503822 1.0000 80 chrX:13283575-13283655 1.0000 80 chrV:19519550-19519630 1.0000 80 chrV:14028353-14028433 1.0000 80 chrIV:17262254-17262334 1.0000 80 chrV:14353357-14353437 1.0000 80 chrII:10393502-10393582 1.0000 80 chrII:11728629-11728709 1.0000 80 chrV:20424475-20424555 1.0000 80 chrI:11609165-11609245 1.0000 80 chrV:10937781-10937861 1.0000 80 chrII:13780882-13780962 1.0000 80 chrV:4651785-4651865 1.0000 80 chrIV:6005827-6005907 1.0000 80 chrIII:13411309-13411389 1.0000 80 chrII:12798867-12798947 1.0000 80 chrX:15200885-15200965 1.0000 80 chrI:4153539-4153619 1.0000 80 chrI:3638874-3638954 1.0000 80 chrIV:11147172-11147252 1.0000 80 chrV:18573387-18573467 1.0000 80 chrII:14155724-14155804 1.0000 80 chrIII:4195547-4195627 1.0000 80 chrV:6537996-6538076 1.0000 80 chrX:15796721-15796801 1.0000 80 chrI:7105787-7105867 1.0000 80 chrII:549875-549955 1.0000 80 chrIV:1086913-1086993 1.0000 80 chrX:11163196-11163276 1.0000 80 chrV:6226696-6226776 1.0000 80 chrII:6891400-6891480 1.0000 80 chrIII:8979165-8979245 1.0000 80 chrII:11337174-11337254 1.0000 80 chrX:3116354-3116434 1.0000 80 chrII:12541681-12541761 1.0000 80 chrIV:2770949-2771029 1.0000 80 chrIV:3313515-3313595 1.0000 80 chrX:5407427-5407507 1.0000 80 chrII:10325880-10325960 1.0000 80 chrI:6164337-6164417 1.0000 80 chrX:5713646-5713726 1.0000 80 chrI:6835578-6835658 1.0000 80 chrV:14358673-14358753 1.0000 80 chrIII:11694544-11694624 1.0000 80 chrII:14237362-14237442 1.0000 80 chrV:7432804-7432884 1.0000 80 chrX:16150265-16150345 1.0000 80 chrX:1452040-1452120 1.0000 80 chrIV:2928573-2928653 1.0000 80 chrIV:9438905-9438985 1.0000 80 chrIII:7338797-7338877 1.0000 80 chrIII:1420005-1420085 1.0000 80 chrV:5275229-5275309 1.0000 80 chrIII:10719615-10719695 1.0000 80 chrX:8154588-8154668 1.0000 80 chrV:9786950-9787030 1.0000 80 chrI:7656626-7656706 1.0000 80 chrV:5587257-5587337 1.0000 80 chrII:10556080-10556160 1.0000 80 chrII:5599818-5599898 1.0000 80 chrI:4645451-4645531 1.0000 80 chrIII:6133562-6133642 1.0000 80 chrIV:8377630-8377710 1.0000 80 chrIII:10244443-10244523 1.0000 80 chrX:4524081-4524161 1.0000 80 chrII:24608-24688 1.0000 80 chrV:14444973-14445053 1.0000 80 chrI:12728067-12728147 1.0000 80 chrII:4882127-4882207 1.0000 80 chrX:8638897-8638977 1.0000 80 chrV:10042449-10042529 1.0000 80 chrX:14164281-14164361 1.0000 80 chrII:4891594-4891674 1.0000 80 chrX:6535834-6535914 1.0000 80 chrIV:2665771-2665851 1.0000 80 chrIII:8161092-8161172 1.0000 80 chrII:9886250-9886330 1.0000 80 chrV:3712327-3712407 1.0000 80 chrV:12510337-12510417 1.0000 80 chrX:4146524-4146604 1.0000 80 chrV:8936387-8936467 1.0000 80 chrX:2528135-2528215 1.0000 80 chrV:10887660-10887740 1.0000 80 chrIV:867034-867114 1.0000 80 chrI:1701244-1701324 1.0000 80 chrIII:235315-235395 1.0000 80 chrIV:1769258-1769338 1.0000 80 chrI:12995753-12995833 1.0000 80 chrI:2864091-2864171 1.0000 80 chrIV:991450-991530 1.0000 80 chrII:7319731-7319811 1.0000 80 chrIV:3336705-3336785 1.0000 80 chrIV:13314448-13314528 1.0000 80 chrIII:10845003-10845083 1.0000 80 chrIV:6117864-6117944 1.0000 80 chrIII:8873182-8873262 1.0000 80 chrIII:3873459-3873539 1.0000 80 chrIV:6325950-6326030 1.0000 80 chrIII:3869533-3869613 1.0000 80 chrX:4395588-4395668 1.0000 80 chrI:2869898-2869978 1.0000 80 chrI:1067130-1067210 1.0000 80 chrX:10667683-10667763 1.0000 80 chrIII:5273562-5273642 1.0000 80 chrII:2976863-2976943 1.0000 80 chrIV:1065846-1065926 1.0000 80 chrX:13349423-13349503 1.0000 80 chrIII:7141467-7141547 1.0000 80 chrIV:1711191-1711271 1.0000 80 chrIV:8795230-8795310 1.0000 80 chrIII:11066916-11066996 1.0000 80 chrV:13907688-13907768 1.0000 80 chrIII:7465497-7465577 1.0000 80 chrII:11167246-11167326 1.0000 80 chrV:7858117-7858197 1.0000 80 chrX:1010916-1010996 1.0000 80 chrIV:4473096-4473176 1.0000 80 chrV:1262248-1262328 1.0000 80 chrI:7279355-7279435 1.0000 80 chrII:10016136-10016216 1.0000 80 chrIV:1012545-1012625 1.0000 80 chrII:14019681-14019761 1.0000 80 chrX:6867856-6867936 1.0000 80 chrIV:14327137-14327217 1.0000 80 chrIV:13388845-13388925 1.0000 80 chrIV:12417896-12417976 1.0000 80 chrII:4999291-4999371 1.0000 80 chrI:3829710-3829790 1.0000 80 chrX:12347991-12348071 1.0000 80 chrX:1389485-1389565 1.0000 80 chrV:5836112-5836192 1.0000 80 chrII:6346601-6346681 1.0000 80 chrV:14008516-14008596 1.0000 80 chrIII:13065882-13065962 1.0000 80 chrV:10341996-10342076 1.0000 80 chrX:15773412-15773492 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_spr-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/spr-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.23 G 0.233 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.23 G 0.233 T 0.264 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGCGCTGC MEME-1 width = 8 sites = 7 llr = 81 E-value = 6.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a:a::a probability G :a:a::a: matrix T :::::a:: bits 2.1 ***** ** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10016136-10016216 58 9.35e-06 GCACGCGCAC CGCGCTGC TGCCTGAGGA chrIV:1711191-1711271 39 9.35e-06 CCGAGCAACT CGCGCTGC TCATTCACTC chrX:5407427-5407507 33 9.35e-06 ATGAGACTGA CGCGCTGC CTACTGCGCT chrI:3638874-3638954 25 9.35e-06 ATGAGACTGA CGCGCTGC CTACTGCGCT chrX:12876981-12877061 16 9.35e-06 ATCATTTGTT CGCGCTGC TCTCCCCACG chrV:12331962-12332042 50 9.35e-06 AACAGCCGAA CGCGCTGC CTATTGCGCC chrX:12663757-12663837 28 9.35e-06 CGGAAACGTG CGCGCTGC TGTGGAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10016136-10016216 9.3e-06 57_[+1]_15 chrIV:1711191-1711271 9.3e-06 38_[+1]_34 chrX:5407427-5407507 9.3e-06 32_[+1]_40 chrI:3638874-3638954 9.3e-06 24_[+1]_48 chrX:12876981-12877061 9.3e-06 15_[+1]_57 chrV:12331962-12332042 9.3e-06 49_[+1]_23 chrX:12663757-12663837 9.3e-06 27_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCTGC width=8 seqs=7 chrII:10016136-10016216 ( 58) CGCGCTGC 1 chrIV:1711191-1711271 ( 39) CGCGCTGC 1 chrX:5407427-5407507 ( 33) CGCGCTGC 1 chrI:3638874-3638954 ( 25) CGCGCTGC 1 chrX:12876981-12877061 ( 16) CGCGCTGC 1 chrV:12331962-12332042 ( 50) CGCGCTGC 1 chrX:12663757-12663837 ( 28) CGCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 6.7e+001 -945 212 -945 -945 -945 -945 210 -945 -945 212 -945 -945 -945 -945 210 -945 -945 212 -945 -945 -945 -945 -945 192 -945 -945 210 -945 -945 212 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 6.7e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTGC MEME-1 regular expression -------------------------------------------------------------------------------- CGCGCTGC -------------------------------------------------------------------------------- Time 4.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTCHMH MEME-2 width = 8 sites = 44 llr = 338 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTCHMH MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::454 pos.-specific C ::::a233 probability G ::::::2: matrix T aaaa:4:3 bits 2.1 * 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.1 bits) 0.8 ***** 0.6 ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCAAA consensus TCT sequence CGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCHMH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2869898-2869978 35 4.47e-05 ACGTCCCAGT TTTTCTAA AAAATACACT chrIV:991450-991530 12 4.47e-05 TCAGGCAGCT TTTTCAAA CGGTCAATCA chrI:8867905-8867985 18 4.47e-05 TTGGTACAAA TTTTCTAA CTGAATCTAT chrX:4193161-4193241 58 4.47e-05 ATTTTCAGAG TTTTCAAA ATGTTTTTTT chrX:14808861-14808941 5 4.47e-05 TGAA TTTTCTAA ACACTTTCCT chrII:11719705-11719785 31 4.47e-05 TGGAGTCCGT TTTTCAAA ATATTGGCAA chrII:4891594-4891674 17 8.80e-05 AACTAATTTA TTTTCAAT CTCGTGGAAA chrII:24608-24688 66 8.80e-05 GCGATACGCG TTTTCAAT ACGAGGC chrI:4153539-4153619 50 8.80e-05 ATTTATTGGA TTTTCAAT AAAGAAGTTA chrI:11584803-11584883 62 8.80e-05 GGGCTTACGT TTTTCTAT GTTTAGATAA chrV:9318221-9318301 60 8.80e-05 CCAAATCTAT TTTTCAAT TCTGGAAATT chrX:4520099-4520179 16 8.80e-05 TACTTCCTTC TTTTCAAT GTTTTCAGTT chrV:2131001-2131081 32 8.80e-05 ttgccgcagg ttttcaat tccggtaatt chrII:7081955-7082035 48 8.80e-05 TTCAGTTTTA TTTTCAAT GGTTTTAAGC chrV:19519550-19519630 50 1.26e-04 AGAATTTGAA TTTTCAAC TCAAAACCTT chrI:10776233-10776313 70 1.26e-04 TTTTTTCTTC TTTTCTAC TTT chrV:20847893-20847973 72 1.26e-04 GTCACTCACA TTTTCAAC T chrI:14875468-14875548 65 1.26e-04 GAATTACCCG TTTTCAAC ACTTTTCG chrV:6559737-6559817 3 1.26e-04 GC TTTTCTAC CAAAATCATG chrV:14008516-14008596 23 1.63e-04 TATCTCTCAC TTTTCACA TATCGATTGC chrIII:10244443-10244523 30 1.63e-04 TTTTTATTGA TTTTCTCA AAATAGAGGG chrIII:7495223-7495303 27 1.63e-04 GGTTTTCGGT TTTTCTCA AGGCTTTCAC chrII:4999291-4999371 10 2.19e-04 CCTCGCAGT TTTTCTCT GTGTCTCTCA chrV:13907688-13907768 20 2.19e-04 CAAGGAATTA TTTTCCAA GCTATCACCC chrI:1701244-1701324 49 2.19e-04 TTTAACGCAT TTTTCTCT TGATTTTAAC chrIV:867034-867114 32 2.19e-04 CGGCTCAGCC TTTTCCAA GTTGTATCAA chrIII:5273562-5273642 46 2.69e-04 TTCAGGAGTT TTTTCTCC ATGTGGATCC chrX:11924328-11924408 26 2.69e-04 GCCCTTGTCC TTTTCTCC ATCGATGTCC chrX:6535834-6535914 9 3.23e-04 TCACGTAT TTTTCTGA AGTGTTATTG chrV:7432804-7432884 70 3.23e-04 TTCAAAGCTA TTTTCAGA TAC chrIV:2770949-2771029 49 3.23e-04 tgagAAAGAC TTTTCTGA AGCTGTATCA chrX:13349423-13349503 31 3.76e-04 CATAAATATT TTTTCTGT AAAAATCCTT chrIII:1420005-1420085 67 3.76e-04 CCGGCAGTGG TTTTCCCA TAGTTT chrII:11728629-11728709 65 3.76e-04 GCACTATCAC TTTTCCCA CTCTCTGA chrII:8441684-8441764 69 3.76e-04 AATTACGTTG TTTTCTGT ACAC chrII:11167246-11167326 2 4.24e-04 C TTTTCAGC AGACCGAGGC chrX:15200885-15200965 73 4.24e-04 TGACGCAACT TTTTCTGC chrII:10542838-10542918 11 4.24e-04 ATTTTCGACA TTTTCAGC ACAAGAGATC chrIV:2315689-2315769 11 4.24e-04 CCGACGTCAC TTTTCCCT TCAAGACCAT chrII:7003045-7003125 72 4.24e-04 CTGTGAAACG TTTTCCCT T chrIII:2811572-2811652 28 4.38e-04 ATTGCCTGCC TTTTCCCC TTCCAGATAC chrX:13764786-13764866 15 4.38e-04 GCATTTTTTA TTTTCCCC ATTCCACCAA chrX:8608888-8608968 65 4.54e-04 AGACTCACAC TTTTCCGA TAAGTGGA chrIV:13882751-13882831 68 4.70e-04 ATTGCCACGT TTTTCCGT GAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCHMH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2869898-2869978 4.5e-05 34_[+2]_38 chrIV:991450-991530 4.5e-05 11_[+2]_61 chrI:8867905-8867985 4.5e-05 17_[+2]_55 chrX:4193161-4193241 4.5e-05 57_[+2]_15 chrX:14808861-14808941 4.5e-05 4_[+2]_68 chrII:11719705-11719785 4.5e-05 30_[+2]_42 chrII:4891594-4891674 8.8e-05 16_[+2]_56 chrII:24608-24688 8.8e-05 65_[+2]_7 chrI:4153539-4153619 8.8e-05 49_[+2]_23 chrI:11584803-11584883 8.8e-05 61_[+2]_11 chrV:9318221-9318301 8.8e-05 59_[+2]_13 chrX:4520099-4520179 8.8e-05 15_[+2]_57 chrV:2131001-2131081 8.8e-05 31_[+2]_41 chrII:7081955-7082035 8.8e-05 47_[+2]_25 chrV:19519550-19519630 0.00013 49_[+2]_23 chrI:10776233-10776313 0.00013 69_[+2]_3 chrV:20847893-20847973 0.00013 71_[+2]_1 chrI:14875468-14875548 0.00013 64_[+2]_8 chrV:6559737-6559817 0.00013 2_[+2]_70 chrV:14008516-14008596 0.00016 22_[+2]_50 chrIII:10244443-10244523 0.00016 29_[+2]_43 chrIII:7495223-7495303 0.00016 26_[+2]_46 chrII:4999291-4999371 0.00022 9_[+2]_63 chrV:13907688-13907768 0.00022 19_[+2]_53 chrI:1701244-1701324 0.00022 48_[+2]_24 chrIV:867034-867114 0.00022 31_[+2]_41 chrIII:5273562-5273642 0.00027 45_[+2]_27 chrX:11924328-11924408 0.00027 25_[+2]_47 chrX:6535834-6535914 0.00032 8_[+2]_64 chrV:7432804-7432884 0.00032 69_[+2]_3 chrIV:2770949-2771029 0.00032 48_[+2]_24 chrX:13349423-13349503 0.00038 30_[+2]_42 chrIII:1420005-1420085 0.00038 66_[+2]_6 chrII:11728629-11728709 0.00038 64_[+2]_8 chrII:8441684-8441764 0.00038 68_[+2]_4 chrII:11167246-11167326 0.00042 1_[+2]_71 chrX:15200885-15200965 0.00042 72_[+2] chrII:10542838-10542918 0.00042 10_[+2]_62 chrIV:2315689-2315769 0.00042 10_[+2]_62 chrII:7003045-7003125 0.00042 71_[+2]_1 chrIII:2811572-2811652 0.00044 27_[+2]_45 chrX:13764786-13764866 0.00044 14_[+2]_58 chrX:8608888-8608968 0.00045 64_[+2]_8 chrIV:13882751-13882831 0.00047 67_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCHMH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTCHMH width=8 seqs=44 chrI:2869898-2869978 ( 35) TTTTCTAA 1 chrIV:991450-991530 ( 12) TTTTCAAA 1 chrI:8867905-8867985 ( 18) TTTTCTAA 1 chrX:4193161-4193241 ( 58) TTTTCAAA 1 chrX:14808861-14808941 ( 5) TTTTCTAA 1 chrII:11719705-11719785 ( 31) TTTTCAAA 1 chrII:4891594-4891674 ( 17) TTTTCAAT 1 chrII:24608-24688 ( 66) TTTTCAAT 1 chrI:4153539-4153619 ( 50) TTTTCAAT 1 chrI:11584803-11584883 ( 62) TTTTCTAT 1 chrV:9318221-9318301 ( 60) TTTTCAAT 1 chrX:4520099-4520179 ( 16) TTTTCAAT 1 chrV:2131001-2131081 ( 32) TTTTCAAT 1 chrII:7081955-7082035 ( 48) TTTTCAAT 1 chrV:19519550-19519630 ( 50) TTTTCAAC 1 chrI:10776233-10776313 ( 70) TTTTCTAC 1 chrV:20847893-20847973 ( 72) TTTTCAAC 1 chrI:14875468-14875548 ( 65) TTTTCAAC 1 chrV:6559737-6559817 ( 3) TTTTCTAC 1 chrV:14008516-14008596 ( 23) TTTTCACA 1 chrIII:10244443-10244523 ( 30) TTTTCTCA 1 chrIII:7495223-7495303 ( 27) TTTTCTCA 1 chrII:4999291-4999371 ( 10) TTTTCTCT 1 chrV:13907688-13907768 ( 20) TTTTCCAA 1 chrI:1701244-1701324 ( 49) TTTTCTCT 1 chrIV:867034-867114 ( 32) TTTTCCAA 1 chrIII:5273562-5273642 ( 46) TTTTCTCC 1 chrX:11924328-11924408 ( 26) TTTTCTCC 1 chrX:6535834-6535914 ( 9) TTTTCTGA 1 chrV:7432804-7432884 ( 70) TTTTCAGA 1 chrIV:2770949-2771029 ( 49) TTTTCTGA 1 chrX:13349423-13349503 ( 31) TTTTCTGT 1 chrIII:1420005-1420085 ( 67) TTTTCCCA 1 chrII:11728629-11728709 ( 65) TTTTCCCA 1 chrII:8441684-8441764 ( 69) TTTTCTGT 1 chrII:11167246-11167326 ( 2) TTTTCAGC 1 chrX:15200885-15200965 ( 73) TTTTCTGC 1 chrII:10542838-10542918 ( 11) TTTTCAGC 1 chrIV:2315689-2315769 ( 11) TTTTCCCT 1 chrII:7003045-7003125 ( 72) TTTTCCCT 1 chrIII:2811572-2811652 ( 28) TTTTCCCC 1 chrX:13764786-13764866 ( 15) TTTTCCCC 1 chrX:8608888-8608968 ( 65) TTTTCCGA 1 chrIV:13882751-13882831 ( 68) TTTTCCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCHMH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.4e+002 -1210 -1210 -1210 192 -1210 -1210 -1210 192 -1210 -1210 -1210 192 -1210 -1210 -1210 192 -1210 212 -1210 -1210 50 -2 -1210 55 80 36 -3 -1210 50 24 -1210 37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCHMH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.4e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.386364 0.227273 0.000000 0.386364 0.477273 0.295455 0.227273 0.000000 0.386364 0.272727 0.000000 0.340909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCHMH MEME-2 regular expression -------------------------------------------------------------------------------- TTTTC[ATC][ACG][ATC] -------------------------------------------------------------------------------- Time 8.59 secs. ******************************************************************************** ******************************************************************************** MOTIF CACGCCMA MEME-3 width = 8 sites = 10 llr = 101 E-value = 3.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACGCCMA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7::::5a pos.-specific C a:a:aa5: probability G :3:a:::: matrix T :::::::: bits 2.1 * **** 1.9 * **** * 1.7 * **** * 1.5 * **** * Relative 1.3 * **** * Entropy 1.1 ******** (14.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACGCCAA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCMA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11694544-11694624 21 1.12e-05 CTTAACAAGC CACGCCCA TAAATTGGGC chrI:12654730-12654810 72 1.12e-05 ACAAGAGTGA CACGCCCA C chrX:1909540-1909620 31 1.12e-05 TAGCAAGCGA CACGCCCA CATGCCGTCC chrII:15119688-15119768 66 1.12e-05 CTCGTTTGGC CACGCCCA CTTTGTT chrII:4790878-4790958 46 1.12e-05 CTCGTTTGGC CACGCCCA CTTGATTCGT chrI:12995753-12995833 9 2.44e-05 ACGCAAAA CACGCCAA GCGCTCGTGC chrV:5050343-5050423 22 2.44e-05 CCACCGGCAC CACGCCAA CAGCATCACG chrII:10016136-10016216 4 4.53e-05 CGC CGCGCCAA AGAGACGCAT chrI:12728067-12728147 43 4.53e-05 CGTCGAGAAA CGCGCCAA GGCGAGTGCT chrI:6164337-6164417 41 4.53e-05 GCATTTGCCG CGCGCCAA GGACATGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCMA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11694544-11694624 1.1e-05 20_[+3]_52 chrI:12654730-12654810 1.1e-05 71_[+3]_1 chrX:1909540-1909620 1.1e-05 30_[+3]_42 chrII:15119688-15119768 1.1e-05 65_[+3]_7 chrII:4790878-4790958 1.1e-05 45_[+3]_27 chrI:12995753-12995833 2.4e-05 8_[+3]_64 chrV:5050343-5050423 2.4e-05 21_[+3]_51 chrII:10016136-10016216 4.5e-05 3_[+3]_69 chrI:12728067-12728147 4.5e-05 42_[+3]_30 chrI:6164337-6164417 4.5e-05 40_[+3]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCMA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACGCCMA width=8 seqs=10 chrIII:11694544-11694624 ( 21) CACGCCCA 1 chrI:12654730-12654810 ( 72) CACGCCCA 1 chrX:1909540-1909620 ( 31) CACGCCCA 1 chrII:15119688-15119768 ( 66) CACGCCCA 1 chrII:4790878-4790958 ( 46) CACGCCCA 1 chrI:12995753-12995833 ( 9) CACGCCAA 1 chrV:5050343-5050423 ( 22) CACGCCAA 1 chrII:10016136-10016216 ( 4) CGCGCCAA 1 chrI:12728067-12728147 ( 43) CGCGCCAA 1 chrI:6164337-6164417 ( 41) CGCGCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCMA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 3.9e+004 -997 212 -997 -997 136 -997 37 -997 -997 212 -997 -997 -997 -997 210 -997 -997 212 -997 -997 -997 212 -997 -997 87 112 -997 -997 187 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCMA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.9e+004 0.000000 1.000000 0.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCCMA MEME-3 regular expression -------------------------------------------------------------------------------- C[AG]CGCC[AC]A -------------------------------------------------------------------------------- Time 12.31 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCCCGC MEME-4 width = 8 sites = 2 llr = 23 E-value = 6.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCCCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aaaa:a probability G ::::::a: matrix T :a:::::: bits 2.1 * ****** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCCCCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6117864-6117944 15 9.11e-06 ACAGTCTCAA CTCCCCGC ACTGAAGGAA chrI:12728067-12728147 8 9.11e-06 TCAATGT CTCCCCGC ACTCTCTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6117864-6117944 9.1e-06 14_[+4]_58 chrI:12728067-12728147 9.1e-06 7_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCCCGC width=8 seqs=2 chrIV:6117864-6117944 ( 15) CTCCCCGC 1 chrI:12728067-12728147 ( 8) CTCCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 6.0e+004 -765 211 -765 -765 -765 -765 -765 192 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 -765 210 -765 -765 211 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.0e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCGC MEME-4 regular expression -------------------------------------------------------------------------------- CTCCCCGC -------------------------------------------------------------------------------- Time 16.21 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCCGC MEME-5 width = 8 sites = 2 llr = 23 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaaaa:a probability G ::::::a: matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8873182-8873262 5 7.93e-06 TCTG CCCCCCGC GCTCATTAGG chrI:4769675-4769755 16 7.93e-06 cgtccatgta ccccccgc cgggccgtgG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8873182-8873262 7.9e-06 4_[+5]_68 chrI:4769675-4769755 7.9e-06 15_[+5]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCCGC width=8 seqs=2 chrIII:8873182-8873262 ( 5) CCCCCCGC 1 chrI:4769675-4769755 ( 16) CCCCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.7e+004 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 -765 210 -765 -765 211 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.7e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCGC MEME-5 regular expression -------------------------------------------------------------------------------- CCCCCCGC -------------------------------------------------------------------------------- Time 19.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10117621-10117701 9.23e-01 80 chrII:5633598-5633678 8.90e-01 80 chrII:11719705-11719785 3.21e-01 30_[+2(4.47e-05)]_42 chrII:4790878-4790958 3.88e-02 45_[+3(1.12e-05)]_27 chrII:15119688-15119768 1.13e-02 65_[+3(1.12e-05)]_7 chrII:11720957-11721037 4.56e-01 80 chrII:7081955-7082035 1.55e-01 47_[+2(8.80e-05)]_25 chrX:4494597-4494677 7.16e-01 80 chrV:5780868-5780948 8.48e-01 80 chrIII:13605095-13605175 6.16e-01 80 chrIV:9530904-9530984 8.52e-01 80 chrIV:3311395-3311475 2.66e-02 80 chrX:14808861-14808941 1.55e-01 4_[+2(4.47e-05)]_68 chrX:4517127-4517207 9.65e-01 80 chrV:5050343-5050423 9.95e-03 21_[+3(2.44e-05)]_51 chrV:2131001-2131081 3.18e-01 31_[+2(8.80e-05)]_41 chrII:7003045-7003125 1.78e-02 80 chrIV:2315689-2315769 2.99e-01 80 chrIV:11080999-11081079 9.89e-01 80 chrII:4710303-4710383 8.52e-01 80 chrII:15119891-15119971 5.36e-01 80 chrIII:4015603-4015683 9.94e-01 80 chrX:4524843-4524923 9.81e-01 80 chrI:2878634-2878714 9.76e-01 80 chrIV:13035506-13035586 2.08e-02 80 chrV:10887431-10887511 7.68e-01 80 chrV:18576299-18576379 9.00e-01 80 chrII:12787926-12788006 8.43e-01 80 chrIII:12235107-12235187 9.88e-01 80 chrII:5353816-5353896 3.81e-01 80 chrX:4522447-4522527 9.92e-01 80 chrIV:11955844-11955924 1.00e+00 80 chrIV:6792491-6792571 7.46e-01 80 chrX:8608888-8608968 4.18e-01 80 chrV:13090450-13090530 9.96e-01 80 chrV:6559737-6559817 4.48e-01 80 chrII:8441684-8441764 6.84e-01 80 chrV:12510133-12510213 1.00e+00 80 chrIII:11921908-11921988 4.84e-01 80 chrIV:7754135-7754215 3.19e-01 80 chrX:4495411-4495491 5.96e-01 80 chrX:14476846-14476926 6.44e-01 80 chrX:12663757-12663837 2.06e-02 27_[+1(9.35e-06)]_45 chrV:5780090-5780170 8.26e-01 80 chrIV:16950481-16950561 6.86e-03 80 chrIV:15931265-15931345 9.68e-01 80 chrI:14875468-14875548 4.51e-01 80 chrIII:7495223-7495303 4.94e-01 80 chrX:11603331-11603411 9.90e-01 80 chrIV:10111067-10111147 9.84e-01 80 chrIV:10216985-10217065 9.83e-01 80 chrIV:10934043-10934123 6.77e-01 80 chrX:13764786-13764866 5.42e-01 80 chrI:14946698-14946778 9.79e-01 80 chrIV:2658980-2659060 6.98e-01 80 chrII:10707814-10707894 2.55e-01 80 chrV:727687-727767 7.86e-01 80 chrV:8415195-8415275 9.20e-01 80 chrX:11924328-11924408 5.05e-01 80 chrV:20847893-20847973 3.04e-01 80 chrII:10542838-10542918 3.94e-01 80 chrII:14617092-14617172 7.65e-01 80 chrI:4769675-4769755 1.22e-04 15_[+5(7.93e-06)]_57 chrIII:11830592-11830672 9.96e-01 80 chrI:7015713-7015793 4.29e-02 80 chrII:9739080-9739160 9.96e-01 80 chrX:11645826-11645906 7.63e-01 80 chrIII:13072045-13072125 8.32e-02 80 chrV:6225187-6225267 5.85e-01 80 chrV:14354499-14354579 9.67e-01 80 chrII:8603743-8603823 3.06e-01 80 chrIV:13882751-13882831 5.68e-01 80 chrI:9100176-9100256 3.16e-01 80 chrIII:13544772-13544852 4.84e-01 80 chrII:1238099-1238179 8.71e-01 80 chrX:4520099-4520179 2.34e-01 15_[+2(8.80e-05)]_57 chrX:6253902-6253982 9.07e-01 80 chrIII:10214629-10214709 2.15e-01 80 chrV:19520320-19520400 6.28e-01 80 chrX:14478861-14478941 4.92e-01 80 chrIII:2811572-2811652 5.76e-01 80 chrV:9318221-9318301 1.05e-01 59_[+2(8.80e-05)]_13 chrV:5667486-5667566 5.51e-01 80 chrIV:7083418-7083498 9.96e-01 80 chrV:15065385-15065465 6.87e-01 80 chrX:1909540-1909620 4.46e-03 30_[+3(1.12e-05)]_42 chrX:4193161-4193241 3.22e-01 57_[+2(4.47e-05)]_15 chrI:10776233-10776313 1.03e-01 80 chrV:9734269-9734349 8.17e-01 80 chrI:4911588-4911668 9.28e-01 80 chrII:12059597-12059677 7.06e-01 80 chrV:12549856-12549936 6.08e-01 80 chrII:9113940-9114020 1.39e-02 80 chrIV:2639761-2639841 4.95e-01 80 chrV:16622085-16622165 6.51e-01 80 chrX:4961139-4961219 9.92e-01 80 chrV:12331962-12332042 2.04e-02 49_[+1(9.35e-06)]_23 chrII:13159901-13159981 8.34e-01 80 chrX:12876981-12877061 2.20e-04 15_[+1(9.35e-06)]_57 chrI:513959-514039 5.57e-01 80 chrI:11584803-11584883 1.30e-02 61_[+2(8.80e-05)]_11 chrI:8867905-8867985 3.16e-01 17_[+2(4.47e-05)]_55 chrI:852163-852243 2.25e-02 80 chrIII:10809056-10809136 5.29e-01 80 chrIII:9783367-9783447 9.73e-01 80 chrII:4755784-4755864 8.90e-01 80 chrI:12654730-12654810 3.77e-02 71_[+3(1.12e-05)]_1 chrX:12655610-12655690 2.44e-03 39_[+4(3.45e-05)]_33 chrV:5330137-5330217 8.08e-01 80 chrV:103136-103216 1.00e+00 80 chrIII:2032596-2032676 7.29e-01 80 chrIII:5230662-5230742 1.14e-01 80 chrI:8866850-8866930 1.00e+00 80 chrIV:5085579-5085659 8.20e-01 80 chrIV:16503742-16503822 2.14e-01 80 chrX:13283575-13283655 9.96e-01 80 chrV:19519550-19519630 4.86e-01 80 chrV:14028353-14028433 8.52e-01 80 chrIV:17262254-17262334 5.79e-01 80 chrV:14353357-14353437 9.05e-01 80 chrII:10393502-10393582 1.00e+00 80 chrII:11728629-11728709 1.38e-01 80 chrV:20424475-20424555 2.46e-02 80 chrI:11609165-11609245 6.11e-01 80 chrV:10937781-10937861 2.05e-02 80 chrII:13780882-13780962 3.17e-01 80 chrV:4651785-4651865 1.94e-01 80 chrIV:6005827-6005907 9.50e-01 80 chrIII:13411309-13411389 7.59e-02 80 chrII:12798867-12798947 2.08e-01 80 chrX:15200885-15200965 1.51e-01 80 chrI:4153539-4153619 4.23e-01 49_[+2(8.80e-05)]_23 chrI:3638874-3638954 1.25e-02 24_[+1(9.35e-06)]_48 chrIV:11147172-11147252 9.89e-01 80 chrV:18573387-18573467 6.46e-01 80 chrII:14155724-14155804 7.88e-01 80 chrIII:4195547-4195627 6.48e-01 80 chrV:6537996-6538076 5.56e-01 80 chrX:15796721-15796801 9.83e-01 80 chrI:7105787-7105867 8.54e-01 80 chrII:549875-549955 9.36e-01 80 chrIV:1086913-1086993 9.86e-01 80 chrX:11163196-11163276 6.75e-01 80 chrV:6226696-6226776 6.42e-01 80 chrII:6891400-6891480 9.60e-01 80 chrIII:8979165-8979245 9.73e-01 80 chrII:11337174-11337254 9.03e-01 80 chrX:3116354-3116434 9.59e-01 80 chrII:12541681-12541761 6.51e-01 80 chrIV:2770949-2771029 6.76e-01 80 chrIV:3313515-3313595 6.87e-01 80 chrX:5407427-5407507 2.93e-02 32_[+1(9.35e-06)]_40 chrII:10325880-10325960 9.99e-01 80 chrI:6164337-6164417 8.42e-03 40_[+3(4.53e-05)]_32 chrX:5713646-5713726 9.95e-01 80 chrI:6835578-6835658 7.70e-01 80 chrV:14358673-14358753 6.69e-01 80 chrIII:11694544-11694624 7.12e-03 20_[+3(1.12e-05)]_52 chrII:14237362-14237442 8.49e-01 80 chrV:7432804-7432884 6.66e-01 80 chrX:16150265-16150345 1.00e+00 80 chrX:1452040-1452120 5.89e-01 80 chrIV:2928573-2928653 5.60e-02 80 chrIV:9438905-9438985 1.98e-01 80 chrIII:7338797-7338877 2.35e-01 80 chrIII:1420005-1420085 1.32e-02 80 chrV:5275229-5275309 6.88e-01 80 chrIII:10719615-10719695 9.98e-01 80 chrX:8154588-8154668 3.11e-01 80 chrV:9786950-9787030 7.90e-01 80 chrI:7656626-7656706 9.23e-01 80 chrV:5587257-5587337 4.46e-01 80 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************