******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/sox-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:3496971-3497051 1.0000 80 chrX:16944180-16944260 1.0000 80 chrX:5056376-5056456 1.0000 80 chrI:933477-933557 1.0000 80 chrIII:931568-931648 1.0000 80 chrV:12633216-12633296 1.0000 80 chrIV:13549487-13549567 1.0000 80 chrIV:1981109-1981189 1.0000 80 chrV:13646084-13646164 1.0000 80 chrIII:11355929-11356009 1.0000 80 chrX:3532327-3532407 1.0000 80 chrX:12692110-12692190 1.0000 80 chrV:3587782-3587862 1.0000 80 chrIII:8511420-8511500 1.0000 80 chrIII:13032611-13032691 1.0000 80 chrIII:445600-445680 1.0000 80 chrII:5399309-5399389 1.0000 80 chrIII:3499985-3500065 1.0000 80 chrI:11203422-11203502 1.0000 80 chrIII:6138610-6138690 1.0000 80 chrX:16944453-16944533 1.0000 80 chrV:13393380-13393460 1.0000 80 chrX:9296707-9296787 1.0000 80 chrV:15505217-15505297 1.0000 80 chrV:12510129-12510209 1.0000 80 chrII:8128857-8128937 1.0000 80 chrI:14708036-14708116 1.0000 80 chrIV:5371048-5371128 1.0000 80 chrX:2885451-2885531 1.0000 80 chrX:13730802-13730882 1.0000 80 chrI:12225451-12225531 1.0000 80 chrV:1821455-1821535 1.0000 80 chrX:8156107-8156187 1.0000 80 chrV:4647999-4648079 1.0000 80 chrI:11595212-11595292 1.0000 80 chrX:5816486-5816566 1.0000 80 chrX:3994611-3994691 1.0000 80 chrI:4176017-4176097 1.0000 80 chrI:7548345-7548425 1.0000 80 chrI:4367861-4367941 1.0000 80 chrII:6898147-6898227 1.0000 80 chrII:2570545-2570625 1.0000 80 chrIII:4280932-4281012 1.0000 80 chrIV:13002096-13002176 1.0000 80 chrX:15515977-15516057 1.0000 80 chrIII:1218383-1218463 1.0000 80 chrIII:12235065-12235145 1.0000 80 chrX:6953476-6953556 1.0000 80 chrII:13315415-13315495 1.0000 80 chrX:15630941-15631021 1.0000 80 chrV:9583109-9583189 1.0000 80 chrX:4961141-4961221 1.0000 80 chrII:1238003-1238083 1.0000 80 chrI:9249378-9249458 1.0000 80 chrX:986640-986720 1.0000 80 chrII:2976761-2976841 1.0000 80 chrIV:13017018-13017098 1.0000 80 chrV:2135518-2135598 1.0000 80 chrIII:5769869-5769949 1.0000 80 chrV:10478330-10478410 1.0000 80 chrIV:10342201-10342281 1.0000 80 chrX:4294844-4294924 1.0000 80 chrI:11589111-11589191 1.0000 80 chrIII:3664383-3664463 1.0000 80 chrIV:16863606-16863686 1.0000 80 chrV:19723056-19723136 1.0000 80 chrX:7153543-7153623 1.0000 80 chrV:7231030-7231110 1.0000 80 chrX:8603189-8603269 1.0000 80 chrX:3969492-3969572 1.0000 80 chrI:6532031-6532111 1.0000 80 chrI:9855568-9855648 1.0000 80 chrX:13716495-13716575 1.0000 80 chrII:12824603-12824683 1.0000 80 chrX:13415121-13415201 1.0000 80 chrV:15553998-15554078 1.0000 80 chrV:6830123-6830203 1.0000 80 chrV:12027008-12027088 1.0000 80 chrX:12407456-12407536 1.0000 80 chrV:20410471-20410551 1.0000 80 chrIII:11481665-11481745 1.0000 80 chrIII:10808098-10808178 1.0000 80 chrIV:11871370-11871450 1.0000 80 chrIV:5753112-5753192 1.0000 80 chrII:5871565-5871645 1.0000 80 chrI:10097408-10097488 1.0000 80 chrII:4238049-4238129 1.0000 80 chrX:8995634-8995714 1.0000 80 chrII:3055641-3055721 1.0000 80 chrI:11782248-11782328 1.0000 80 chrX:8818101-8818181 1.0000 80 chrI:12088539-12088619 1.0000 80 chrIV:5334673-5334753 1.0000 80 chrII:3428344-3428424 1.0000 80 chrX:8638921-8639001 1.0000 80 chrX:7961948-7962028 1.0000 80 chrII:6943835-6943915 1.0000 80 chrII:11694661-11694741 1.0000 80 chrX:12183329-12183409 1.0000 80 chrIII:13293120-13293200 1.0000 80 chrX:760688-760768 1.0000 80 chrIII:11935219-11935299 1.0000 80 chrX:9999596-9999676 1.0000 80 chrIII:13525524-13525604 1.0000 80 chrX:4145658-4145738 1.0000 80 chrIV:1358111-1358191 1.0000 80 chrI:1175839-1175919 1.0000 80 chrI:14606015-14606095 1.0000 80 chrIV:14496671-14496751 1.0000 80 chrIII:3175163-3175243 1.0000 80 chrIII:8650406-8650486 1.0000 80 chrIII:6537295-6537375 1.0000 80 chrIV:842806-842886 1.0000 80 chrV:4450386-4450466 1.0000 80 chrI:1575649-1575729 1.0000 80 chrI:9381118-9381198 1.0000 80 chrIII:10432247-10432327 1.0000 80 chrIV:8183404-8183484 1.0000 80 chrI:7474993-7475073 1.0000 80 chrV:5284761-5284841 1.0000 80 chrII:11959339-11959419 1.0000 80 chrX:3348031-3348111 1.0000 80 chrX:5764838-5764918 1.0000 80 chrIV:14874960-14875040 1.0000 80 chrV:13396579-13396659 1.0000 80 chrIII:7727824-7727904 1.0000 80 chrIII:1122438-1122518 1.0000 80 chrIV:2775962-2776042 1.0000 80 chrIII:11937042-11937122 1.0000 80 chrIII:1824679-1824759 1.0000 80 chrIII:6133616-6133696 1.0000 80 chrI:3873921-3874001 1.0000 80 chrIII:6123706-6123786 1.0000 80 chrIV:5038922-5039002 1.0000 80 chrI:12004903-12004983 1.0000 80 chrII:7708750-7708830 1.0000 80 chrV:9293519-9293599 1.0000 80 chrII:7001603-7001683 1.0000 80 chrI:3567608-3567688 1.0000 80 chrIV:1896301-1896381 1.0000 80 chrIII:9104263-9104343 1.0000 80 chrV:6880808-6880888 1.0000 80 chrIV:3854757-3854837 1.0000 80 chrI:9014166-9014246 1.0000 80 chrV:8631531-8631611 1.0000 80 chrV:5330037-5330117 1.0000 80 chrI:6051149-6051229 1.0000 80 chrX:12890251-12890331 1.0000 80 chrX:8969663-8969743 1.0000 80 chrX:5354737-5354817 1.0000 80 chrV:20832811-20832891 1.0000 80 chrI:10175352-10175432 1.0000 80 chrI:11609253-11609333 1.0000 80 chrX:2043336-2043416 1.0000 80 chrX:14115658-14115738 1.0000 80 chrII:5017432-5017512 1.0000 80 chrIV:16946909-16946989 1.0000 80 chrV:14524360-14524440 1.0000 80 chrI:4132362-4132442 1.0000 80 chrIII:4426847-4426927 1.0000 80 chrIV:1514552-1514632 1.0000 80 chrV:9318149-9318229 1.0000 80 chrIII:6805599-6805679 1.0000 80 chrX:16150305-16150385 1.0000 80 chrIII:3916793-3916873 1.0000 80 chrIII:7711075-7711155 1.0000 80 chrIII:4428924-4429004 1.0000 80 chrII:6565216-6565296 1.0000 80 chrII:10169549-10169629 1.0000 80 chrIII:12399868-12399948 1.0000 80 chrIII:1601591-1601671 1.0000 80 chrI:9605775-9605855 1.0000 80 chrII:7003049-7003129 1.0000 80 chrX:3803487-3803567 1.0000 80 chrI:7543694-7543774 1.0000 80 chrI:11505527-11505607 1.0000 80 chrIII:11792752-11792832 1.0000 80 chrII:14358070-14358150 1.0000 80 chrX:1021905-1021985 1.0000 80 chrIII:4542534-4542614 1.0000 80 chrII:3439367-3439447 1.0000 80 chrIII:8768079-8768159 1.0000 80 chrI:13310329-13310409 1.0000 80 chrX:5407399-5407479 1.0000 80 chrIII:8873335-8873415 1.0000 80 chrIV:3227614-3227694 1.0000 80 chrIII:13225192-13225272 1.0000 80 chrX:13977656-13977736 1.0000 80 chrX:16928287-16928367 1.0000 80 chrV:53447-53527 1.0000 80 chrV:13962170-13962250 1.0000 80 chrX:9078311-9078391 1.0000 80 chrV:11239340-11239420 1.0000 80 chrII:5772918-5772998 1.0000 80 chrIV:1687232-1687312 1.0000 80 chrII:14635386-14635466 1.0000 80 chrV:4731557-4731637 1.0000 80 chrIII:1142933-1143013 1.0000 80 chrX:8646490-8646570 1.0000 80 chrI:14924714-14924794 1.0000 80 chrII:6248629-6248709 1.0000 80 chrV:16553035-16553115 1.0000 80 chrI:6136567-6136647 1.0000 80 chrI:1701218-1701298 1.0000 80 chrX:13653700-13653780 1.0000 80 chrV:9692409-9692489 1.0000 80 chrV:20789187-20789267 1.0000 80 chrII:3521489-3521569 1.0000 80 chrIV:11310783-11310863 1.0000 80 chrV:14689504-14689584 1.0000 80 chrIV:620419-620499 1.0000 80 chrII:11157775-11157855 1.0000 80 chrIII:7642157-7642237 1.0000 80 chrII:3567694-3567774 1.0000 80 chrX:13583994-13584074 1.0000 80 chrI:14721599-14721679 1.0000 80 chrI:11323338-11323418 1.0000 80 chrIII:3620754-3620834 1.0000 80 chrIII:8106626-8106706 1.0000 80 chrV:12780412-12780492 1.0000 80 chrIII:10094726-10094806 1.0000 80 chrIII:535350-535430 1.0000 80 chrIII:7030557-7030637 1.0000 80 chrX:14804859-14804939 1.0000 80 chrIII:4721779-4721859 1.0000 80 chrI:2293104-2293184 1.0000 80 chrX:4444209-4444289 1.0000 80 chrII:5293470-5293550 1.0000 80 chrIV:2993357-2993437 1.0000 80 chrIV:1388263-1388343 1.0000 80 chrIV:2639824-2639904 1.0000 80 chrV:6709219-6709299 1.0000 80 chrIV:6481154-6481234 1.0000 80 chrX:12205791-12205871 1.0000 80 chrX:17315072-17315152 1.0000 80 chrIII:8971792-8971872 1.0000 80 chrI:8305453-8305533 1.0000 80 chrX:1858797-1858877 1.0000 80 chrX:10145160-10145240 1.0000 80 chrIII:9052724-9052804 1.0000 80 chrIV:9191315-9191395 1.0000 80 chrX:5319377-5319457 1.0000 80 chrX:12367664-12367744 1.0000 80 chrX:5708039-5708119 1.0000 80 chrI:488402-488482 1.0000 80 chrX:10821346-10821426 1.0000 80 chrIII:8653051-8653131 1.0000 80 chrIV:16776058-16776138 1.0000 80 chrIV:16684408-16684488 1.0000 80 chrX:16040373-16040453 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_sox-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/sox-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.241 C 0.254 G 0.257 T 0.247 Background letter frequencies (from file dataset with add-one prior applied): A 0.241 C 0.254 G 0.257 T 0.247 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WGMAAAAA MEME-1 width = 8 sites = 69 llr = 501 E-value = 2.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGMAAAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3249aa79 pos.-specific C 2:6:::1: probability G 17:1:::: matrix T 4:::::21 bits 2.1 ** 1.8 ** 1.6 *** * 1.4 *** * Relative 1.2 *** * Entropy 1.0 ***** * (10.5 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TGCAAAAA consensus AAA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGMAAAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:11157775-11157855 15 1.31e-05 ATTTAAAAAA TGCAAAAA GATAAGCCCA chrV:4731557-4731637 34 1.31e-05 GCGGGGACAT TGCAAAAA CGCGCGCGCG chrV:13962170-13962250 48 1.31e-05 GCGCGGCAAC TGCAAAAA AGGGCGGAGC chrII:3439367-3439447 15 1.31e-05 TGTTACAAAC TGCAAAAA CATCAGCCCA chrIII:12399868-12399948 28 1.31e-05 AAAAAGGCGT TGCAAAAA CCGATAGGTT chrI:1175839-1175919 29 1.31e-05 GCGGCACACT TGCAAAAA CCGTGCGCCC chrX:16944180-16944260 2 1.31e-05 G TGCAAAAA AACTTGCACA chrIV:5371048-5371128 9 2.55e-05 AAAATTGA TGAAAAAA CAGGTAAAAT chrI:14708036-14708116 25 2.55e-05 ATGAAAACTC TGAAAAAA GCCTGAAAAT chrII:5399309-5399389 29 2.55e-05 AAATAATTGT TGAAAAAA TATAATTAAA chrI:13310329-13310409 3 3.83e-05 TC AGCAAAAA GAGATTGCCC chrIII:4542534-4542614 6 6.40e-05 AGAAT AGAAAAAA TGCGCGGCGT chrIV:2775962-2776042 68 6.40e-05 CCAAAAAAAC CGCAAAAA AAAGA chrI:14606015-14606095 5 6.40e-05 AAAA AGAAAAAA CTTGGCGGGT chrX:9999596-9999676 14 6.40e-05 AGGGGGATGC CGCAAAAA ATCGGGAGAA chrX:7961948-7962028 40 6.40e-05 AGGACCGGCG AGAAAAAA GAAGGATAAA chrI:11782248-11782328 61 6.40e-05 CTTTCCAATT CGCAAAAA TGATGCGTCG chrX:4961141-4961221 26 6.40e-05 AGGGGGGGGA AGAAAAAA GGAATCGTCG chrIII:4428924-4429004 5 7.62e-05 CAGC TACAAAAA AAGAATAAAA chrIII:4280932-4281012 15 7.62e-05 TCAAACTAAA TACAAAAA AACACGTGAG chrI:11323338-11323418 33 1.02e-04 TGCGGCGGTT TGCAAATA TCGCGCGCCC chrIV:16946909-16946989 25 1.02e-04 GCGCACCACT TGCAAATA GCACGCGCGC chrV:20832811-20832891 17 1.14e-04 CCAATAAAAA TAAAAAAA TTCCACAGAT chrII:13315415-13315495 73 1.14e-04 gccggaaatt taaaaaaa chrIII:12235065-12235145 34 1.14e-04 acaaggtccc taaaaaaa gcgctacagt chrII:2570545-2570625 64 1.14e-04 AAATAATCTC TAAAAAAA CCGGCAAAG chrII:7708750-7708830 72 1.39e-04 AGCCCAAGGC AACAAAAA T chrX:4145658-4145738 63 1.39e-04 CGTCGCTTGC AACAAAAA TCGATTCTCG chrIV:10342201-10342281 28 1.39e-04 AAAAATGCGA TGAAAATA GCGGCAAGCT chrI:4367861-4367941 11 1.39e-04 TAAATTTTGC TGAAAATA ACAGATTCTG chrIII:3916793-3916873 29 1.66e-04 GCGGCGACTT TGCAAACA CTGCGCGCGC chrV:14524360-14524440 48 1.66e-04 CGCGGTTGTG TGCAAACA CGCCGCACAC chrI:10097408-10097488 60 1.66e-04 GGTTTGTGGA GGCAAAAA AGAGCCCATC chrX:4294844-4294924 29 1.66e-04 GGGGGGGGGG GGCAAAAA TCTTGAGGGA chrIII:11481665-11481745 43 1.79e-04 GAGAAAGGTC AGCAAATA TTTGAATGAC chrIII:8768079-8768159 65 2.03e-04 CAACTCCGCC CACAAAAA ATGCAATT chrIII:4426847-4426927 3 2.03e-04 TT CACAAAAA ATTTGGAACG chrX:12890251-12890331 6 2.03e-04 AGTCT CACAAAAA CAAACAATGA chrI:9381118-9381198 14 2.03e-04 cacccgcacg cacaaaaa acgcacacac chrV:3587782-3587862 2 2.30e-04 A GGAAAAAA GGGCGGAGTC chrI:1701218-1701298 32 2.56e-04 CGGACACTGT AGAAAATA ATTTTTTTTG chrI:12004903-12004983 5 2.56e-04 aaaa agaaaata aaaataaaaa chrIV:1981109-1981189 70 2.56e-04 CGTGCCGCAT CGCAAATA TTT chrV:12780412-12780492 69 2.81e-04 CCATTTCAAC AGCAAACA GGGC chrIV:11310783-11310863 67 3.07e-04 TGCGGGACTC TGCAAAAT TGAATT chrIII:1824679-1824759 34 3.07e-04 GCGGCGCTCT TGCAAAAT CGCGCGCCGC chrV:10478330-10478410 14 3.07e-04 TTGGCTATTG TACAAATA AATATTTGCG chrX:16040373-16040453 73 3.47e-04 GGCGGAACGC AGAAAACA chrIII:10094726-10094806 36 3.47e-04 CCGCCGCGCG CGCAAACA CAGACACCCT chrIV:3854757-3854837 2 3.47e-04 C CGCAAACA CTCACAGATG chrII:3567694-3567774 43 3.72e-04 TTTCACCACC TAAAAATA TAGATGGTAG chrIV:16863606-16863686 5 3.72e-04 CCGC TGAAAAAT ATCTAATTTC chrV:9692409-9692489 35 3.98e-04 AAAGAGAGAG GACAAAAA TGCGACGACT chrIV:620419-620499 30 4.51e-04 GAGAGTAGGG AACAAATA GACACTGAGA chrV:14689504-14689584 18 4.51e-04 CGGCATCGAC CGAAAACA TGCCGTCGAT chrI:6136567-6136647 10 4.51e-04 TCTAGGCCA CGAAAACA TGTTGTGTCG chrII:4238049-4238129 43 4.51e-04 GCGGCACACT TGCGAAAA TGCGTGCGGC chrI:11595212-11595292 5 4.51e-04 CCGT TGCGAAAA ACGAATTTTT chrX:5407399-5407479 3 5.53e-04 AA AGAAAAAT AATTGCTCCC chrI:4132362-4132442 56 5.53e-04 ATTTTCTGCT CGCAAAAT GTGTTTATTT chrI:9014166-9014246 40 5.53e-04 AGAAAATCAA AGAAAAAT TGGAGAAGAT chrIII:8650406-8650486 60 5.53e-04 GCCCGGCTGG AGAAAAAT GGGGGACTTT chrX:3496971-3497051 69 5.53e-04 TGTCGGGCAC TGAGAAAA ATAG chrIV:2639824-2639904 57 5.92e-04 CCACATAGGA TCCAAAAA CTGAGGGCGC chrX:8603189-8603269 70 5.92e-04 ggaaatttgg ggaaaata ggg chrV:2135518-2135598 44 5.92e-04 ACGAAGACTG Ggaaaata agaaggaaga chrI:7548345-7548425 28 7.09e-04 cacacacaca cacaaaca cacacaactc chrIII:6133616-6133696 37 7.62e-04 GAAGCATAAG AGAGAAAA GGGACGTGGA chrX:760688-760768 5 7.75e-04 GTAG ACCAAAAA GGGGCATAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGMAAAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11157775-11157855 1.3e-05 14_[+1]_58 chrV:4731557-4731637 1.3e-05 33_[+1]_39 chrV:13962170-13962250 1.3e-05 47_[+1]_25 chrII:3439367-3439447 1.3e-05 14_[+1]_58 chrIII:12399868-12399948 1.3e-05 27_[+1]_45 chrI:1175839-1175919 1.3e-05 28_[+1]_44 chrX:16944180-16944260 1.3e-05 1_[+1]_71 chrIV:5371048-5371128 2.6e-05 8_[+1]_64 chrI:14708036-14708116 2.6e-05 24_[+1]_48 chrII:5399309-5399389 2.6e-05 28_[+1]_44 chrI:13310329-13310409 3.8e-05 2_[+1]_70 chrIII:4542534-4542614 6.4e-05 5_[+1]_67 chrIV:2775962-2776042 6.4e-05 67_[+1]_5 chrI:14606015-14606095 6.4e-05 4_[+1]_68 chrX:9999596-9999676 6.4e-05 13_[+1]_59 chrX:7961948-7962028 6.4e-05 39_[+1]_33 chrI:11782248-11782328 6.4e-05 60_[+1]_12 chrX:4961141-4961221 6.4e-05 25_[+1]_47 chrIII:4428924-4429004 7.6e-05 4_[+1]_68 chrIII:4280932-4281012 7.6e-05 14_[+1]_58 chrI:11323338-11323418 0.0001 32_[+1]_40 chrIV:16946909-16946989 0.0001 24_[+1]_48 chrV:20832811-20832891 0.00011 16_[+1]_56 chrII:13315415-13315495 0.00011 72_[+1] chrIII:12235065-12235145 0.00011 33_[+1]_39 chrII:2570545-2570625 0.00011 63_[+1]_9 chrII:7708750-7708830 0.00014 71_[+1]_1 chrX:4145658-4145738 0.00014 62_[+1]_10 chrIV:10342201-10342281 0.00014 27_[+1]_45 chrI:4367861-4367941 0.00014 10_[+1]_62 chrIII:3916793-3916873 0.00017 28_[+1]_44 chrV:14524360-14524440 0.00017 47_[+1]_25 chrI:10097408-10097488 0.00017 59_[+1]_13 chrX:4294844-4294924 0.00017 28_[+1]_44 chrIII:11481665-11481745 0.00018 42_[+1]_30 chrIII:8768079-8768159 0.0002 64_[+1]_8 chrIII:4426847-4426927 0.0002 2_[+1]_70 chrX:12890251-12890331 0.0002 5_[+1]_67 chrI:9381118-9381198 0.0002 13_[+1]_59 chrV:3587782-3587862 0.00023 1_[+1]_71 chrI:1701218-1701298 0.00026 31_[+1]_41 chrI:12004903-12004983 0.00026 4_[+1]_68 chrIV:1981109-1981189 0.00026 69_[+1]_3 chrV:12780412-12780492 0.00028 68_[+1]_4 chrIV:11310783-11310863 0.00031 66_[+1]_6 chrIII:1824679-1824759 0.00031 33_[+1]_39 chrV:10478330-10478410 0.00031 13_[+1]_59 chrX:16040373-16040453 0.00035 72_[+1] chrIII:10094726-10094806 0.00035 35_[+1]_37 chrIV:3854757-3854837 0.00035 1_[+1]_71 chrII:3567694-3567774 0.00037 42_[+1]_30 chrIV:16863606-16863686 0.00037 4_[+1]_68 chrV:9692409-9692489 0.0004 34_[+1]_38 chrIV:620419-620499 0.00045 29_[+1]_43 chrV:14689504-14689584 0.00045 17_[+1]_55 chrI:6136567-6136647 0.00045 9_[+1]_63 chrII:4238049-4238129 0.00045 42_[+1]_30 chrI:11595212-11595292 0.00045 4_[+1]_68 chrX:5407399-5407479 0.00055 2_[+1]_70 chrI:4132362-4132442 0.00055 55_[+1]_17 chrI:9014166-9014246 0.00055 39_[+1]_33 chrIII:8650406-8650486 0.00055 59_[+1]_13 chrX:3496971-3497051 0.00055 68_[+1]_4 chrIV:2639824-2639904 0.00059 56_[+1]_16 chrX:8603189-8603269 0.00059 69_[+1]_3 chrV:2135518-2135598 0.00059 43_[+1]_29 chrI:7548345-7548425 0.00071 27_[+1]_45 chrIII:6133616-6133696 0.00076 36_[+1]_36 chrX:760688-760768 0.00078 4_[+1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGMAAAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGMAAAAA width=8 seqs=69 chrII:11157775-11157855 ( 15) TGCAAAAA 1 chrV:4731557-4731637 ( 34) TGCAAAAA 1 chrV:13962170-13962250 ( 48) TGCAAAAA 1 chrII:3439367-3439447 ( 15) TGCAAAAA 1 chrIII:12399868-12399948 ( 28) TGCAAAAA 1 chrI:1175839-1175919 ( 29) TGCAAAAA 1 chrX:16944180-16944260 ( 2) TGCAAAAA 1 chrIV:5371048-5371128 ( 9) TGAAAAAA 1 chrI:14708036-14708116 ( 25) TGAAAAAA 1 chrII:5399309-5399389 ( 29) TGAAAAAA 1 chrI:13310329-13310409 ( 3) AGCAAAAA 1 chrIII:4542534-4542614 ( 6) AGAAAAAA 1 chrIV:2775962-2776042 ( 68) CGCAAAAA 1 chrI:14606015-14606095 ( 5) AGAAAAAA 1 chrX:9999596-9999676 ( 14) CGCAAAAA 1 chrX:7961948-7962028 ( 40) AGAAAAAA 1 chrI:11782248-11782328 ( 61) CGCAAAAA 1 chrX:4961141-4961221 ( 26) AGAAAAAA 1 chrIII:4428924-4429004 ( 5) TACAAAAA 1 chrIII:4280932-4281012 ( 15) TACAAAAA 1 chrI:11323338-11323418 ( 33) TGCAAATA 1 chrIV:16946909-16946989 ( 25) TGCAAATA 1 chrV:20832811-20832891 ( 17) TAAAAAAA 1 chrII:13315415-13315495 ( 73) TAAAAAAA 1 chrIII:12235065-12235145 ( 34) TAAAAAAA 1 chrII:2570545-2570625 ( 64) TAAAAAAA 1 chrII:7708750-7708830 ( 72) AACAAAAA 1 chrX:4145658-4145738 ( 63) AACAAAAA 1 chrIV:10342201-10342281 ( 28) TGAAAATA 1 chrI:4367861-4367941 ( 11) TGAAAATA 1 chrIII:3916793-3916873 ( 29) TGCAAACA 1 chrV:14524360-14524440 ( 48) TGCAAACA 1 chrI:10097408-10097488 ( 60) GGCAAAAA 1 chrX:4294844-4294924 ( 29) GGCAAAAA 1 chrIII:11481665-11481745 ( 43) AGCAAATA 1 chrIII:8768079-8768159 ( 65) CACAAAAA 1 chrIII:4426847-4426927 ( 3) CACAAAAA 1 chrX:12890251-12890331 ( 6) CACAAAAA 1 chrI:9381118-9381198 ( 14) CACAAAAA 1 chrV:3587782-3587862 ( 2) GGAAAAAA 1 chrI:1701218-1701298 ( 32) AGAAAATA 1 chrI:12004903-12004983 ( 5) AGAAAATA 1 chrIV:1981109-1981189 ( 70) CGCAAATA 1 chrV:12780412-12780492 ( 69) AGCAAACA 1 chrIV:11310783-11310863 ( 67) TGCAAAAT 1 chrIII:1824679-1824759 ( 34) TGCAAAAT 1 chrV:10478330-10478410 ( 14) TACAAATA 1 chrX:16040373-16040453 ( 73) AGAAAACA 1 chrIII:10094726-10094806 ( 36) CGCAAACA 1 chrIV:3854757-3854837 ( 2) CGCAAACA 1 chrII:3567694-3567774 ( 43) TAAAAATA 1 chrIV:16863606-16863686 ( 5) TGAAAAAT 1 chrV:9692409-9692489 ( 35) GACAAAAA 1 chrIV:620419-620499 ( 30) AACAAATA 1 chrV:14689504-14689584 ( 18) CGAAAACA 1 chrI:6136567-6136647 ( 10) CGAAAACA 1 chrII:4238049-4238129 ( 43) TGCGAAAA 1 chrI:11595212-11595292 ( 5) TGCGAAAA 1 chrX:5407399-5407479 ( 3) AGAAAAAT 1 chrI:4132362-4132442 ( 56) CGCAAAAT 1 chrI:9014166-9014246 ( 40) AGAAAAAT 1 chrIII:8650406-8650486 ( 60) AGAAAAAT 1 chrX:3496971-3497051 ( 69) TGAGAAAA 1 chrIV:2639824-2639904 ( 57) TCCAAAAA 1 chrX:8603189-8603269 ( 70) GGAAAATA 1 chrV:2135518-2135598 ( 44) GGAAAATA 1 chrI:7548345-7548425 ( 28) CACAAACA 1 chrIII:6133616-6133696 ( 37) AGAGAAAA 1 chrX:760688-760768 ( 5) ACCAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGMAAAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85237 E= 2.3e-007 11 -33 -156 86 3 -313 150 -1275 75 122 -1275 -1275 196 -1275 -215 -1275 205 -1275 -1275 -1275 205 -1275 -1275 -1275 150 -96 -1275 -39 190 -1275 -1275 -129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGMAAAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.3e-007 0.260870 0.202899 0.086957 0.449275 0.246377 0.028986 0.724638 0.000000 0.405797 0.594203 0.000000 0.000000 0.942029 0.000000 0.057971 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.681159 0.130435 0.000000 0.188406 0.898551 0.000000 0.000000 0.101449 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGMAAAAA MEME-1 regular expression -------------------------------------------------------------------------------- [TAC][GA][CA]AAAAA -------------------------------------------------------------------------------- Time 5.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 16 llr = 171 E-value = 1.0e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a:1::a matrix T a:::9::: bits 2.1 **** *** 1.8 **** *** 1.6 **** *** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8653051-8653131 11 1.51e-05 TGTGCCTCGA TAGCTCAG TTGGGAGAGC chrX:14804859-14804939 25 1.51e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:535350-535430 39 1.51e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrV:14689504-14689584 35 1.51e-05 ATGCCGTCGA TAGCTCAG TTGGTAGAGC chrX:13653700-13653780 35 1.51e-05 GTCGCCCTTA TAGCTCAG TGGTAGAGCG chrI:6136567-6136647 37 1.51e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrIII:11792752-11792832 37 1.51e-05 GACGCCCGTA TAGCTCAG TGGCAGAGCG chrI:11505527-11505607 31 1.51e-05 ATCGGGGGTA TAGCTCAG TGGCAGAGCA chrII:6565216-6565296 39 1.51e-05 CTGGCCTCCT TAGCTCAG TTGGTAGAGC chrV:9318149-9318229 60 1.51e-05 CGTGGGGGTA TAGCTCAG GGGTAGAGCG chrII:7001603-7001683 31 1.51e-05 GTTACCTGTG TAGCTCAG GGGTAGAGCG chrIV:5038922-5039002 5 1.51e-05 TCCT TAGCTCAG TTGGTAGAGC chrX:8638921-8639001 8 1.51e-05 GGGGGTA TAGCTCAG TGGCAGAGCA chrX:13716495-13716575 5 1.51e-05 TGGT TAGCTCAG TCGGTAGAGC chrIII:8106626-8106706 34 3.08e-05 GCCGCTTCCG TAGCGCAG TAGGCAGCGC chrIII:1122438-1122518 3 3.08e-05 TT TAGCGCAG GCGGGAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8653051-8653131 1.5e-05 10_[+2]_62 chrX:14804859-14804939 1.5e-05 24_[+2]_48 chrIII:535350-535430 1.5e-05 38_[+2]_34 chrV:14689504-14689584 1.5e-05 34_[+2]_38 chrX:13653700-13653780 1.5e-05 34_[+2]_38 chrI:6136567-6136647 1.5e-05 36_[+2]_36 chrIII:11792752-11792832 1.5e-05 36_[+2]_36 chrI:11505527-11505607 1.5e-05 30_[+2]_42 chrII:6565216-6565296 1.5e-05 38_[+2]_34 chrV:9318149-9318229 1.5e-05 59_[+2]_13 chrII:7001603-7001683 1.5e-05 30_[+2]_42 chrIV:5038922-5039002 1.5e-05 4_[+2]_68 chrX:8638921-8639001 1.5e-05 7_[+2]_65 chrX:13716495-13716575 1.5e-05 4_[+2]_68 chrIII:8106626-8106706 3.1e-05 33_[+2]_39 chrIII:1122438-1122518 3.1e-05 2_[+2]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=16 chrIII:8653051-8653131 ( 11) TAGCTCAG 1 chrX:14804859-14804939 ( 25) TAGCTCAG 1 chrIII:535350-535430 ( 39) TAGCTCAG 1 chrV:14689504-14689584 ( 35) TAGCTCAG 1 chrX:13653700-13653780 ( 35) TAGCTCAG 1 chrI:6136567-6136647 ( 37) TAGCTCAG 1 chrIII:11792752-11792832 ( 37) TAGCTCAG 1 chrI:11505527-11505607 ( 31) TAGCTCAG 1 chrII:6565216-6565296 ( 39) TAGCTCAG 1 chrV:9318149-9318229 ( 60) TAGCTCAG 1 chrII:7001603-7001683 ( 31) TAGCTCAG 1 chrIV:5038922-5039002 ( 5) TAGCTCAG 1 chrX:8638921-8639001 ( 8) TAGCTCAG 1 chrX:13716495-13716575 ( 5) TAGCTCAG 1 chrIII:8106626-8106706 ( 34) TAGCGCAG 1 chrIII:1122438-1122518 ( 3) TAGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 1.0e-006 -1064 -1064 -1064 201 205 -1064 -1064 -1064 -1064 -1064 196 -1064 -1064 197 -1064 -1064 -1064 -1064 -104 182 -1064 197 -1064 -1064 205 -1064 -1064 -1064 -1064 -1064 196 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.0e-006 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 10.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-3 width = 8 sites = 22 llr = 202 E-value = 7.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a7::1 pos.-specific C :9::1aa8 probability G ::a:2::: matrix T a1:::::1 bits 2.1 * ** * 1.8 * ** * 1.6 **** ** 1.4 **** ** Relative 1.2 **** ** Entropy 1.0 **** *** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6481154-6481234 61 1.53e-05 GGTCGCCGGT TCGAACCC GGCCAGGACC chrIII:7642157-7642237 16 1.53e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrII:11157775-11157855 42 1.53e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrII:5772918-5772998 13 1.53e-05 CGAGTGGGGT TCGAACCC ACGAGGTGTT chrII:3439367-3439447 42 1.53e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrI:9605775-9605855 44 1.53e-05 CCGCGTAGGT TCGAACCC TGCTCGCTGC chrI:6051149-6051229 21 1.53e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGA chrV:15505217-15505297 6 1.53e-05 gggaa tcgaaccc gggccgcccg chrIII:6805599-6805679 23 3.17e-05 GGTTGGTGGT TCGAGCCC ACCCGGGAGC chrIII:11935219-11935299 66 3.17e-05 TTTCCTTTGC TCGAGCCC TTGCTGC chrX:13716495-13716575 52 3.17e-05 TGTCGCGGTT TCGAGCCC CGCATTGGGC chrV:19723056-19723136 29 3.17e-05 GGTTGGTGGT TCGAGCCC ACCCGGGAGC chrX:13730802-13730882 30 3.17e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrIII:7030557-7030637 15 6.24e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrII:3521489-3521569 13 6.24e-05 GCGGCTGGAA TCGAACCA GCGTCGCCAC chrII:6248629-6248709 73 6.24e-05 CAATGTAGGT TCGACCCC chrX:7153543-7153623 64 6.24e-05 AGAGTTGGTG TCGACCCC CGGCCAATG chrX:13415121-13415201 14 7.74e-05 CCAGCAGGGG TCGAACCT GCGACCTTGG chrIII:1218383-1218463 8 7.74e-05 GCAGGGG TCGAACCT GCGACCTTGG chrIII:4428924-4429004 44 9.23e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:12890251-12890331 49 9.23e-05 GCACGGGGAA TTGAACCC CGGACTTCTC chrX:10145160-10145240 50 1.07e-04 GATTGTAGGT TCGAATCC TGCCGTGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6481154-6481234 1.5e-05 60_[+3]_12 chrIII:7642157-7642237 1.5e-05 15_[+3]_57 chrII:11157775-11157855 1.5e-05 41_[+3]_31 chrII:5772918-5772998 1.5e-05 12_[+3]_60 chrII:3439367-3439447 1.5e-05 41_[+3]_31 chrI:9605775-9605855 1.5e-05 43_[+3]_29 chrI:6051149-6051229 1.5e-05 20_[+3]_52 chrV:15505217-15505297 1.5e-05 5_[+3]_67 chrIII:6805599-6805679 3.2e-05 22_[+3]_50 chrIII:11935219-11935299 3.2e-05 65_[+3]_7 chrX:13716495-13716575 3.2e-05 51_[+3]_21 chrV:19723056-19723136 3.2e-05 28_[+3]_44 chrX:13730802-13730882 3.2e-05 29_[+3]_43 chrIII:7030557-7030637 6.2e-05 14_[+3]_58 chrII:3521489-3521569 6.2e-05 12_[+3]_60 chrII:6248629-6248709 6.2e-05 72_[+3] chrX:7153543-7153623 6.2e-05 63_[+3]_9 chrX:13415121-13415201 7.7e-05 13_[+3]_59 chrIII:1218383-1218463 7.7e-05 7_[+3]_65 chrIII:4428924-4429004 9.2e-05 43_[+3]_29 chrX:12890251-12890331 9.2e-05 48_[+3]_24 chrX:10145160-10145240 0.00011 49_[+3]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=22 chrIV:6481154-6481234 ( 61) TCGAACCC 1 chrIII:7642157-7642237 ( 16) TCGAACCC 1 chrII:11157775-11157855 ( 42) TCGAACCC 1 chrII:5772918-5772998 ( 13) TCGAACCC 1 chrII:3439367-3439447 ( 42) TCGAACCC 1 chrI:9605775-9605855 ( 44) TCGAACCC 1 chrI:6051149-6051229 ( 21) TCGAACCC 1 chrV:15505217-15505297 ( 6) TCGAACCC 1 chrIII:6805599-6805679 ( 23) TCGAGCCC 1 chrIII:11935219-11935299 ( 66) TCGAGCCC 1 chrX:13716495-13716575 ( 52) TCGAGCCC 1 chrV:19723056-19723136 ( 29) TCGAGCCC 1 chrX:13730802-13730882 ( 30) TCGAGCCC 1 chrIII:7030557-7030637 ( 15) TCGAACCA 1 chrII:3521489-3521569 ( 13) TCGAACCA 1 chrII:6248629-6248709 ( 73) TCGACCCC 1 chrX:7153543-7153623 ( 64) TCGACCCC 1 chrX:13415121-13415201 ( 14) TCGAACCT 1 chrIII:1218383-1218463 ( 8) TCGAACCT 1 chrIII:4428924-4429004 ( 44) TTGAACCC 1 chrX:12890251-12890331 ( 49) TTGAACCC 1 chrX:10145160-10145240 ( 50) TCGAATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 7.3e-001 -1110 -1110 -1110 201 -1110 184 -1110 -144 -1110 -1110 196 -1110 205 -1110 -1110 -1110 150 -148 -18 -1110 -1110 191 -1110 -244 -1110 197 -1110 -1110 -141 168 -1110 -144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 7.3e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.681818 0.090909 0.227273 0.000000 0.000000 0.954545 0.000000 0.045455 0.000000 1.000000 0.000000 0.000000 0.090909 0.818182 0.000000 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 regular expression -------------------------------------------------------------------------------- TCGA[AG]CCC -------------------------------------------------------------------------------- Time 14.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TAACCACT MEME-4 width = 8 sites = 11 llr = 114 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAACCACT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :98::a:: pos.-specific C :1:aa:a: probability G ::2::::: matrix T a::::::a bits 2.1 * ***** 1.8 * ***** 1.6 ** ***** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAACCACT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10821346-10821426 32 1.40e-05 CCACGAATCC TAACCACT AGACCACATG chrX:12367664-12367744 29 1.40e-05 CCACGAATCC TAACCACT AGACCACATG chrIV:2639824-2639904 36 1.40e-05 CCACGAATCC TAACCACT AGACCACATA chrIV:1388263-1388343 4 1.40e-05 TCC TAACCACT AGACCACATG chrV:12780412-12780492 35 1.40e-05 TCCAACTCCT TAACCACT CGGACATCGC chrIII:7642157-7642237 52 1.40e-05 CCATAAATCC TAACCACT AGACCACAAC chrII:3521489-3521569 49 1.40e-05 CGTGGAGTAC TAACCACT ATACTACGCA chrII:5772918-5772998 61 1.40e-05 TCCAACGCCT TAACCACT CGGCCATCGT chrIII:1601591-1601671 28 2.89e-05 GCGAGGTCGG TAGCCACT AAGCCATGGT chrX:3532327-3532407 4 2.89e-05 TCT TAGCCACT GTTTCGGTAA chrIII:3620754-3620834 15 4.37e-05 accaccacca tcaccact accaGCCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10821346-10821426 1.4e-05 31_[+4]_41 chrX:12367664-12367744 1.4e-05 28_[+4]_44 chrIV:2639824-2639904 1.4e-05 35_[+4]_37 chrIV:1388263-1388343 1.4e-05 3_[+4]_69 chrV:12780412-12780492 1.4e-05 34_[+4]_38 chrIII:7642157-7642237 1.4e-05 51_[+4]_21 chrII:3521489-3521569 1.4e-05 48_[+4]_24 chrII:5772918-5772998 1.4e-05 60_[+4]_12 chrIII:1601591-1601671 2.9e-05 27_[+4]_45 chrX:3532327-3532407 2.9e-05 3_[+4]_69 chrIII:3620754-3620834 4.4e-05 14_[+4]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAACCACT width=8 seqs=11 chrX:10821346-10821426 ( 32) TAACCACT 1 chrX:12367664-12367744 ( 29) TAACCACT 1 chrIV:2639824-2639904 ( 36) TAACCACT 1 chrIV:1388263-1388343 ( 4) TAACCACT 1 chrV:12780412-12780492 ( 35) TAACCACT 1 chrIII:7642157-7642237 ( 52) TAACCACT 1 chrII:3521489-3521569 ( 49) TAACCACT 1 chrII:5772918-5772998 ( 61) TAACCACT 1 chrIII:1601591-1601671 ( 28) TAGCCACT 1 chrX:3532327-3532407 ( 4) TAGCCACT 1 chrIII:3620754-3620834 ( 15) TCACCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 1.4e+002 -1010 -1010 -1010 201 191 -148 -1010 -1010 176 -1010 -50 -1010 -1010 197 -1010 -1010 -1010 197 -1010 -1010 205 -1010 -1010 -1010 -1010 197 -1010 -1010 -1010 -1010 -1010 201 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.4e+002 0.000000 0.000000 0.000000 1.000000 0.909091 0.090909 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-4 regular expression -------------------------------------------------------------------------------- TAACCACT -------------------------------------------------------------------------------- Time 17.73 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGGTTA MEME-5 width = 8 sites = 10 llr = 111 E-value = 3.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::a pos.-specific C :::::::: probability G :a:aa::: matrix T ::a::aa: bits 2.1 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5708039-5708119 2 1.49e-05 G AGTGGTTA AGGCGATGGA chrX:1858797-1858877 35 1.49e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrIV:6481154-6481234 20 1.49e-05 CCTGTGGTGT AGTGGTTA TCACGTCTGC chrX:4444209-4444289 66 1.49e-05 CATGTGGTCT AGTGGTTA GGATTCG chrX:8646490-8646570 3 1.49e-05 CT AGTGGTTA GGATTCGTGG chrV:53447-53527 42 1.49e-05 cgcatggccg agtggtta gtacgtatgc chrII:11959339-11959419 49 1.49e-05 CCTGTGGTGT AGTGGTTA TCACGTCTGC chrIV:842806-842886 16 1.49e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrV:15553998-15554078 45 1.49e-05 TGCTTAGTAT AGTGGTTA GTACTCCACG chrII:6898147-6898227 60 1.49e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5708039-5708119 1.5e-05 1_[+5]_71 chrX:1858797-1858877 1.5e-05 34_[+5]_38 chrIV:6481154-6481234 1.5e-05 19_[+5]_53 chrX:4444209-4444289 1.5e-05 65_[+5]_7 chrX:8646490-8646570 1.5e-05 2_[+5]_70 chrV:53447-53527 1.5e-05 41_[+5]_31 chrII:11959339-11959419 1.5e-05 48_[+5]_24 chrIV:842806-842886 1.5e-05 15_[+5]_57 chrV:15553998-15554078 1.5e-05 44_[+5]_28 chrII:6898147-6898227 1.5e-05 59_[+5]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGTTA width=8 seqs=10 chrX:5708039-5708119 ( 2) AGTGGTTA 1 chrX:1858797-1858877 ( 35) AGTGGTTA 1 chrIV:6481154-6481234 ( 20) AGTGGTTA 1 chrX:4444209-4444289 ( 66) AGTGGTTA 1 chrX:8646490-8646570 ( 3) AGTGGTTA 1 chrV:53447-53527 ( 42) AGTGGTTA 1 chrII:11959339-11959419 ( 49) AGTGGTTA 1 chrIV:842806-842886 ( 16) AGTGGTTA 1 chrV:15553998-15554078 ( 45) AGTGGTTA 1 chrII:6898147-6898227 ( 60) AGTGGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 3.1e+000 205 -997 -997 -997 -997 -997 196 -997 -997 -997 -997 201 -997 -997 196 -997 -997 -997 196 -997 -997 -997 -997 201 -997 -997 -997 201 205 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.1e+000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 regular expression -------------------------------------------------------------------------------- AGTGGTTA -------------------------------------------------------------------------------- Time 21.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3496971-3497051 6.38e-01 80 chrX:16944180-16944260 5.53e-02 1_[+1(1.31e-05)]_71 chrX:5056376-5056456 7.14e-01 80 chrI:933477-933557 6.32e-01 80 chrIII:931568-931648 7.96e-01 80 chrV:12633216-12633296 9.83e-01 80 chrIV:13549487-13549567 6.34e-01 80 chrIV:1981109-1981189 3.66e-01 80 chrV:13646084-13646164 9.09e-01 80 chrIII:11355929-11356009 9.72e-01 80 chrX:3532327-3532407 1.02e-01 3_[+4(2.89e-05)]_69 chrX:12692110-12692190 9.60e-01 80 chrV:3587782-3587862 8.26e-02 80 chrIII:8511420-8511500 5.51e-01 80 chrIII:13032611-13032691 9.92e-01 80 chrIII:445600-445680 7.78e-01 80 chrII:5399309-5399389 1.26e-01 28_[+1(2.55e-05)]_44 chrIII:3499985-3500065 3.79e-01 80 chrI:11203422-11203502 6.98e-01 80 chrIII:6138610-6138690 7.67e-01 80 chrX:16944453-16944533 9.60e-01 80 chrV:13393380-13393460 9.37e-01 80 chrX:9296707-9296787 5.76e-01 80 chrV:15505217-15505297 2.57e-02 5_[+3(1.53e-05)]_67 chrV:12510129-12510209 9.95e-01 80 chrII:8128857-8128937 7.15e-01 80 chrI:14708036-14708116 4.81e-02 24_[+1(2.55e-05)]_48 chrIV:5371048-5371128 1.55e-01 8_[+1(2.55e-05)]_64 chrX:2885451-2885531 5.00e-01 80 chrX:13730802-13730882 1.35e-01 29_[+3(3.17e-05)]_43 chrI:12225451-12225531 9.87e-01 80 chrV:1821455-1821535 9.87e-01 80 chrX:8156107-8156187 9.89e-01 80 chrV:4647999-4648079 9.97e-01 80 chrI:11595212-11595292 3.64e-01 80 chrX:5816486-5816566 4.85e-01 80 chrX:3994611-3994691 7.87e-01 80 chrI:4176017-4176097 8.55e-01 80 chrI:7548345-7548425 6.34e-01 80 chrI:4367861-4367941 1.03e-01 80 chrII:6898147-6898227 6.86e-02 59_[+5(1.49e-05)]_13 chrII:2570545-2570625 2.48e-01 80 chrIII:4280932-4281012 2.29e-01 14_[+1(7.62e-05)]_58 chrIV:13002096-13002176 6.09e-01 80 chrX:15515977-15516057 6.34e-01 80 chrIII:1218383-1218463 2.87e-01 7_[+3(7.74e-05)]_65 chrIII:12235065-12235145 2.34e-01 80 chrX:6953476-6953556 9.73e-01 80 chrII:13315415-13315495 3.55e-01 80 chrX:15630941-15631021 9.85e-01 80 chrV:9583109-9583189 7.02e-01 80 chrX:4961141-4961221 2.13e-01 25_[+1(6.40e-05)]_47 chrII:1238003-1238083 3.73e-01 46_[+4(8.85e-05)]_26 chrI:9249378-9249458 8.91e-01 80 chrX:986640-986720 2.91e-01 80 chrII:2976761-2976841 5.28e-01 80 chrIV:13017018-13017098 6.96e-01 80 chrV:2135518-2135598 6.90e-01 80 chrIII:5769869-5769949 9.54e-01 80 chrV:10478330-10478410 2.85e-01 80 chrIV:10342201-10342281 4.64e-01 80 chrX:4294844-4294924 5.03e-01 80 chrI:11589111-11589191 8.17e-01 80 chrIII:3664383-3664463 9.82e-01 80 chrIV:16863606-16863686 2.44e-01 80 chrV:19723056-19723136 2.76e-02 28_[+3(3.17e-05)]_44 chrX:7153543-7153623 5.28e-02 63_[+3(6.24e-05)]_9 chrV:7231030-7231110 4.15e-01 80 chrX:8603189-8603269 5.07e-01 80 chrX:3969492-3969572 7.49e-01 80 chrI:6532031-6532111 6.13e-01 80 chrI:9855568-9855648 1.00e+00 80 chrX:13716495-13716575 1.04e-03 4_[+2(1.51e-05)]_39_[+3(3.17e-05)]_\ 21 chrII:12824603-12824683 9.94e-01 80 chrX:13415121-13415201 2.87e-01 13_[+3(7.74e-05)]_59 chrV:15553998-15554078 5.04e-02 44_[+5(1.49e-05)]_28 chrV:6830123-6830203 7.87e-01 80 chrV:12027008-12027088 8.46e-01 80 chrX:12407456-12407536 9.84e-01 80 chrV:20410471-20410551 9.52e-01 80 chrIII:11481665-11481745 2.65e-02 80 chrIII:10808098-10808178 4.91e-01 80 chrIV:11871370-11871450 1.46e-01 80 chrIV:5753112-5753192 5.18e-01 80 chrII:5871565-5871645 4.81e-01 80 chrI:10097408-10097488 3.15e-01 80 chrII:4238049-4238129 5.67e-02 80 chrX:8995634-8995714 9.58e-01 80 chrII:3055641-3055721 9.23e-01 80 chrI:11782248-11782328 6.49e-02 60_[+1(6.40e-05)]_12 chrX:8818101-8818181 4.02e-01 80 chrI:12088539-12088619 8.27e-01 80 chrIV:5334673-5334753 1.68e-01 80 chrII:3428344-3428424 8.03e-01 80 chrX:8638921-8639001 2.38e-02 7_[+2(1.51e-05)]_65 chrX:7961948-7962028 1.69e-01 39_[+1(6.40e-05)]_33 chrII:6943835-6943915 9.89e-01 80 chrII:11694661-11694741 2.55e-01 80 chrX:12183329-12183409 3.39e-01 80 chrIII:13293120-13293200 6.01e-01 80 chrX:760688-760768 6.25e-01 80 chrIII:11935219-11935299 9.32e-02 65_[+3(3.17e-05)]_7 chrX:9999596-9999676 1.93e-01 13_[+1(6.40e-05)]_59 chrIII:13525524-13525604 9.25e-01 80 chrX:4145658-4145738 2.63e-01 80 chrIV:1358111-1358191 5.93e-01 80 chrI:1175839-1175919 9.77e-02 28_[+1(1.31e-05)]_44 chrI:14606015-14606095 5.32e-02 4_[+1(6.40e-05)]_68 chrIV:14496671-14496751 9.89e-01 80 chrIII:3175163-3175243 9.09e-01 80 chrIII:8650406-8650486 1.09e-01 80 chrIII:6537295-6537375 6.93e-01 80 chrIV:842806-842886 5.59e-02 15_[+5(1.49e-05)]_57 chrV:4450386-4450466 3.63e-01 80 chrI:1575649-1575729 6.07e-01 80 chrI:9381118-9381198 3.59e-01 80 chrIII:10432247-10432327 6.42e-01 80 chrIV:8183404-8183484 5.23e-01 80 chrI:7474993-7475073 8.99e-01 80 chrV:5284761-5284841 9.47e-01 80 chrII:11959339-11959419 1.73e-02 48_[+5(1.49e-05)]_24 chrX:3348031-3348111 5.39e-01 80 chrX:5764838-5764918 7.99e-01 80 chrIV:14874960-14875040 3.97e-01 80 chrV:13396579-13396659 9.66e-01 80 chrIII:7727824-7727904 8.33e-01 80 chrIII:1122438-1122518 2.59e-02 2_[+2(3.08e-05)]_70 chrIV:2775962-2776042 2.45e-01 67_[+1(6.40e-05)]_5 chrIII:11937042-11937122 7.52e-01 80 chrIII:1824679-1824759 3.49e-01 80 chrIII:6133616-6133696 4.42e-01 80 chrI:3873921-3874001 5.88e-01 80 chrIII:6123706-6123786 4.46e-01 80 chrIV:5038922-5039002 3.92e-03 4_[+2(1.51e-05)]_68 chrI:12004903-12004983 4.49e-01 80 chrII:7708750-7708830 1.91e-02 80 chrV:9293519-9293599 9.32e-01 80 chrII:7001603-7001683 7.01e-02 30_[+2(1.51e-05)]_42 chrI:3567608-3567688 3.90e-01 80 chrIV:1896301-1896381 9.19e-01 80 chrIII:9104263-9104343 5.39e-01 80 chrV:6880808-6880888 9.79e-01 80 chrIV:3854757-3854837 1.62e-01 80 chrI:9014166-9014246 5.99e-01 80 chrV:8631531-8631611 7.05e-01 80 chrV:5330037-5330117 4.95e-01 80 chrI:6051149-6051229 1.00e-01 20_[+3(1.53e-05)]_52 chrX:12890251-12890331 3.55e-02 48_[+3(9.23e-05)]_24 chrX:8969663-8969743 2.68e-01 80 chrX:5354737-5354817 6.56e-01 80 chrV:20832811-20832891 5.48e-02 80 chrI:10175352-10175432 8.72e-01 80 chrI:11609253-11609333 3.99e-01 80 chrX:2043336-2043416 2.23e-01 80 chrX:14115658-14115738 7.56e-01 80 chrII:5017432-5017512 7.46e-01 80 chrIV:16946909-16946989 8.16e-02 80 chrV:14524360-14524440 3.37e-01 80 chrI:4132362-4132442 1.35e-01 80 chrIII:4426847-4426927 5.77e-02 80 chrIV:1514552-1514632 2.99e-01 80 chrV:9318149-9318229 6.90e-02 59_[+2(1.51e-05)]_13 chrIII:6805599-6805679 6.46e-02 22_[+3(3.17e-05)]_50 chrX:16150305-16150385 6.46e-01 80 chrIII:3916793-3916873 1.39e-01 80 chrIII:7711075-7711155 7.95e-01 80 chrIII:4428924-4429004 1.73e-02 4_[+1(7.62e-05)]_31_[+3(9.23e-05)]_\ 29 chrII:6565216-6565296 1.94e-02 38_[+2(1.51e-05)]_34 chrII:10169549-10169629 9.99e-01 80 chrIII:12399868-12399948 4.19e-02 27_[+1(1.31e-05)]_45 chrIII:1601591-1601671 7.96e-02 27_[+4(2.89e-05)]_45 chrI:9605775-9605855 1.08e-01 43_[+3(1.53e-05)]_29 chrII:7003049-7003129 9.92e-01 80 chrX:3803487-3803567 2.94e-01 80 chrI:7543694-7543774 8.97e-01 80 chrI:11505527-11505607 6.10e-02 30_[+2(1.51e-05)]_42 chrIII:11792752-11792832 4.39e-02 36_[+2(1.51e-05)]_36 chrII:14358070-14358150 9.32e-01 80 chrX:1021905-1021985 6.40e-01 80 chrIII:4542534-4542614 2.77e-02 5_[+1(6.40e-05)]_67 chrII:3439367-3439447 1.11e-04 14_[+1(1.31e-05)]_19_[+3(1.53e-05)]_\ 31 chrIII:8768079-8768159 3.03e-01 80 chrI:13310329-13310409 4.54e-02 2_[+1(3.83e-05)]_70 chrX:5407399-5407479 1.48e-01 80 chrIII:8873335-8873415 8.14e-01 80 chrIV:3227614-3227694 3.68e-01 80 chrIII:13225192-13225272 9.48e-01 80 chrX:13977656-13977736 9.43e-01 80 chrX:16928287-16928367 4.41e-01 80 chrV:53447-53527 5.27e-02 41_[+5(1.49e-05)]_31 chrV:13962170-13962250 7.93e-02 47_[+1(1.31e-05)]_25 chrX:9078311-9078391 9.70e-01 80 chrV:11239340-11239420 3.02e-01 80 chrII:5772918-5772998 6.30e-04 12_[+3(1.53e-05)]_40_[+4(1.40e-05)]_\ 12 chrIV:1687232-1687312 5.49e-01 80 chrII:14635386-14635466 9.82e-01 80 chrV:4731557-4731637 2.11e-02 33_[+1(1.31e-05)]_39 chrIII:1142933-1143013 7.34e-01 80 chrX:8646490-8646570 5.59e-02 2_[+5(1.49e-05)]_70 chrI:14924714-14924794 9.91e-01 80 chrII:6248629-6248709 1.16e-02 72_[+3(6.24e-05)] chrV:16553035-16553115 8.24e-01 80 chrI:6136567-6136647 3.50e-03 36_[+2(1.51e-05)]_36 chrI:1701218-1701298 1.39e-01 80 chrX:13653700-13653780 5.59e-02 34_[+2(1.51e-05)]_38 chrV:9692409-9692489 5.29e-01 80 chrV:20789187-20789267 9.66e-01 80 chrII:3521489-3521569 3.63e-03 12_[+3(6.24e-05)]_28_[+4(1.40e-05)]_\ 24 chrIV:11310783-11310863 2.66e-01 80 chrV:14689504-14689584 2.70e-03 34_[+2(1.51e-05)]_38 chrIV:620419-620499 1.38e-01 80 chrII:11157775-11157855 1.19e-03 14_[+1(1.31e-05)]_19_[+3(1.53e-05)]_\ 31 chrIII:7642157-7642237 1.01e-03 15_[+3(1.53e-05)]_28_[+4(1.40e-05)]_\ 21 chrII:3567694-3567774 1.09e-01 80 chrX:13583994-13584074 1.00e+00 80 chrI:14721599-14721679 8.75e-01 80 chrI:11323338-11323418 7.65e-03 80 chrIII:3620754-3620834 5.72e-02 14_[+4(4.37e-05)]_58 chrIII:8106626-8106706 3.34e-02 33_[+2(3.08e-05)]_39 chrV:12780412-12780492 1.24e-03 34_[+4(1.40e-05)]_38 chrIII:10094726-10094806 2.70e-01 80 chrIII:535350-535430 5.80e-02 38_[+2(1.51e-05)]_34 chrIII:7030557-7030637 1.09e-01 14_[+3(6.24e-05)]_58 chrX:14804859-14804939 8.17e-02 24_[+2(1.51e-05)]_48 chrIII:4721779-4721859 6.57e-01 80 chrI:2293104-2293184 2.09e-01 80 chrX:4444209-4444289 4.52e-02 65_[+5(1.49e-05)]_7 chrII:5293470-5293550 4.71e-01 80 chrIV:2993357-2993437 9.10e-01 80 chrIV:1388263-1388343 8.57e-03 3_[+4(1.40e-05)]_69 chrIV:2639824-2639904 4.33e-03 35_[+4(1.40e-05)]_37 chrV:6709219-6709299 7.19e-01 80 chrIV:6481154-6481234 1.29e-03 19_[+5(1.49e-05)]_33_[+3(1.53e-05)]_\ 12 chrX:12205791-12205871 1.48e-01 80 chrX:17315072-17315152 6.24e-01 80 chrIII:8971792-8971872 3.84e-02 42_[+4(5.94e-05)]_30 chrI:8305453-8305533 5.77e-01 80 chrX:1858797-1858877 7.82e-02 34_[+5(1.49e-05)]_38 chrX:10145160-10145240 9.81e-02 80 chrIII:9052724-9052804 9.72e-01 80 chrIV:9191315-9191395 7.16e-01 80 chrX:5319377-5319457 3.81e-01 80 chrX:12367664-12367744 2.04e-02 28_[+4(1.40e-05)]_44 chrX:5708039-5708119 1.25e-02 1_[+5(1.49e-05)]_71 chrI:488402-488482 9.38e-01 80 chrX:10821346-10821426 1.46e-02 31_[+4(1.40e-05)]_41 chrIII:8653051-8653131 5.76e-03 10_[+2(1.51e-05)]_62 chrIV:16776058-16776138 8.42e-01 80 chrIV:16684408-16684488 5.27e-01 80 chrX:16040373-16040453 2.87e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************