******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/somi-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:10105588-10105668 1.0000 80 chrV:14725512-14725592 1.0000 80 chrV:6238524-6238604 1.0000 80 chrV:5410845-5410925 1.0000 80 chrV:11803646-11803726 1.0000 80 chrII:8765298-8765378 1.0000 80 chrIV:15398776-15398856 1.0000 80 chrV:6326570-6326650 1.0000 80 chrX:15345853-15345933 1.0000 80 chrV:5697807-5697887 1.0000 80 chrII:13293030-13293110 1.0000 80 chrII:5282982-5283062 1.0000 80 chrV:10953973-10954053 1.0000 80 chrIII:12843002-12843082 1.0000 80 chrIII:63934-64014 1.0000 80 chrX:5820194-5820274 1.0000 80 chrV:13391657-13391737 1.0000 80 chrIV:12009428-12009508 1.0000 80 chrV:11616033-11616113 1.0000 80 chrX:16775573-16775653 1.0000 80 chrX:13744878-13744958 1.0000 80 chrII:8259903-8259983 1.0000 80 chrI:8869246-8869326 1.0000 80 chrIV:11491524-11491604 1.0000 80 chrV:381379-381459 1.0000 80 chrV:4730236-4730316 1.0000 80 chrV:19524787-19524867 1.0000 80 chrIII:10241390-10241470 1.0000 80 chrIV:13083331-13083411 1.0000 80 chrI:12501415-12501495 1.0000 80 chrIV:9672599-9672679 1.0000 80 chrV:12553419-12553499 1.0000 80 chrI:6103314-6103394 1.0000 80 chrII:6909811-6909891 1.0000 80 chrX:16735203-16735283 1.0000 80 chrV:8026547-8026627 1.0000 80 chrIV:6751418-6751498 1.0000 80 chrV:10005527-10005607 1.0000 80 chrX:13812178-13812258 1.0000 80 chrIII:10290727-10290807 1.0000 80 chrIII:11738668-11738748 1.0000 80 chrII:6889814-6889894 1.0000 80 chrV:11118475-11118555 1.0000 80 chrIV:5666416-5666496 1.0000 80 chrX:2840395-2840475 1.0000 80 chrII:3956906-3956986 1.0000 80 chrII:10016272-10016352 1.0000 80 chrX:10688500-10688580 1.0000 80 chrI:10748311-10748391 1.0000 80 chrX:9643254-9643334 1.0000 80 chrIV:6099965-6100045 1.0000 80 chrII:8707090-8707170 1.0000 80 chrII:11838520-11838600 1.0000 80 chrI:10760358-10760438 1.0000 80 chrIV:9868103-9868183 1.0000 80 chrIV:5216490-5216570 1.0000 80 chrV:13202394-13202474 1.0000 80 chrII:12050845-12050925 1.0000 80 chrX:12761419-12761499 1.0000 80 chrIV:309635-309715 1.0000 80 chrIV:11092804-11092884 1.0000 80 chrIII:7271293-7271373 1.0000 80 chrIV:11718829-11718909 1.0000 80 chrX:9147160-9147240 1.0000 80 chrII:15205446-15205526 1.0000 80 chrV:11802568-11802648 1.0000 80 chrIII:9153164-9153244 1.0000 80 chrII:11836751-11836831 1.0000 80 chrX:12425683-12425763 1.0000 80 chrV:8040870-8040950 1.0000 80 chrX:15395855-15395935 1.0000 80 chrX:5653950-5654030 1.0000 80 chrIII:9083384-9083464 1.0000 80 chrIII:10817143-10817223 1.0000 80 chrIII:12839125-12839205 1.0000 80 chrIII:8782825-8782905 1.0000 80 chrX:16725099-16725179 1.0000 80 chrII:2804432-2804512 1.0000 80 chrIV:8529253-8529333 1.0000 80 chrIII:8987119-8987199 1.0000 80 chrIV:8042228-8042308 1.0000 80 chrV:5823097-5823177 1.0000 80 chrX:15380880-15380960 1.0000 80 chrI:7740020-7740100 1.0000 80 chrX:16689983-16690063 1.0000 80 chrIV:4018978-4019058 1.0000 80 chrIII:13763411-13763491 1.0000 80 chrII:7325389-7325469 1.0000 80 chrIII:6148623-6148703 1.0000 80 chrV:11094854-11094934 1.0000 80 chrI:8344553-8344633 1.0000 80 chrII:10574556-10574636 1.0000 80 chrIII:7722619-7722699 1.0000 80 chrV:7089412-7089492 1.0000 80 chrI:2667979-2668059 1.0000 80 chrI:10750076-10750156 1.0000 80 chrI:7130952-7131032 1.0000 80 chrIII:8983881-8983961 1.0000 80 chrX:15706265-15706345 1.0000 80 chrIII:4100086-4100166 1.0000 80 chrIV:17474264-17474344 1.0000 80 chrII:12042687-12042767 1.0000 80 chrX:13113557-13113637 1.0000 80 chrII:7617979-7618059 1.0000 80 chrIII:7358855-7358935 1.0000 80 chrIV:3337478-3337558 1.0000 80 chrIV:1723402-1723482 1.0000 80 chrV:7415931-7416011 1.0000 80 chrII:11713839-11713919 1.0000 80 chrIV:11899467-11899547 1.0000 80 chrX:2070825-2070905 1.0000 80 chrII:1502127-1502207 1.0000 80 chrX:8674660-8674740 1.0000 80 chrIV:8028445-8028525 1.0000 80 chrV:16595130-16595210 1.0000 80 chrV:6045540-6045620 1.0000 80 chrII:9493374-9493454 1.0000 80 chrI:3292125-3292205 1.0000 80 chrI:12055239-12055319 1.0000 80 chrIII:8654708-8654788 1.0000 80 chrV:2076149-2076229 1.0000 80 chrV:9516443-9516523 1.0000 80 chrX:12663783-12663863 1.0000 80 chrI:5826757-5826837 1.0000 80 chrII:8742102-8742182 1.0000 80 chrX:4143526-4143606 1.0000 80 chrI:10104338-10104418 1.0000 80 chrI:5997495-5997575 1.0000 80 chrIII:13056933-13057013 1.0000 80 chrI:7759171-7759251 1.0000 80 chrIII:8739274-8739354 1.0000 80 chrX:17640942-17641022 1.0000 80 chrX:4132431-4132511 1.0000 80 chrI:14922874-14922954 1.0000 80 chrV:15708144-15708224 1.0000 80 chrI:13060510-13060590 1.0000 80 chrX:10689841-10689921 1.0000 80 chrX:1124285-1124365 1.0000 80 chrV:11859269-11859349 1.0000 80 chrX:10639619-10639699 1.0000 80 chrI:7573999-7574079 1.0000 80 chrI:4941237-4941317 1.0000 80 chrX:8676249-8676329 1.0000 80 chrV:11615014-11615094 1.0000 80 chrIV:3654368-3654448 1.0000 80 chrX:10168668-10168748 1.0000 80 chrI:11840811-11840891 1.0000 80 chrV:4820923-4821003 1.0000 80 chrX:8475303-8475383 1.0000 80 chrV:16352332-16352412 1.0000 80 chrI:3986650-3986730 1.0000 80 chrII:5282353-5282433 1.0000 80 chrX:8236202-8236282 1.0000 80 chrI:5025504-5025584 1.0000 80 chrII:8813714-8813794 1.0000 80 chrII:2987402-2987482 1.0000 80 chrI:42167-42247 1.0000 80 chrV:11922331-11922411 1.0000 80 chrV:11777966-11778046 1.0000 80 chrV:9270588-9270668 1.0000 80 chrII:6176631-6176711 1.0000 80 chrX:6739195-6739275 1.0000 80 chrIII:6898676-6898756 1.0000 80 chrI:5314820-5314900 1.0000 80 chrI:3956732-3956812 1.0000 80 chrX:9403842-9403922 1.0000 80 chrX:15634026-15634106 1.0000 80 chrV:3686008-3686088 1.0000 80 chrX:13147220-13147300 1.0000 80 chrV:18705659-18705739 1.0000 80 chrII:10446401-10446481 1.0000 80 chrI:9541251-9541331 1.0000 80 chrIII:10717635-10717715 1.0000 80 chrII:4748454-4748534 1.0000 80 chrIV:8949826-8949906 1.0000 80 chrV:5832964-5833044 1.0000 80 chrIV:664239-664319 1.0000 80 chrV:11888102-11888182 1.0000 80 chrV:6994145-6994225 1.0000 80 chrX:9608252-9608332 1.0000 80 chrX:13325128-13325208 1.0000 80 chrV:6247524-6247604 1.0000 80 chrII:10389237-10389317 1.0000 80 chrII:6849475-6849555 1.0000 80 chrIII:12849391-12849471 1.0000 80 chrI:6219969-6220049 1.0000 80 chrII:5605583-5605663 1.0000 80 chrV:13402502-13402582 1.0000 80 chrI:12552863-12552943 1.0000 80 chrX:17063985-17064065 1.0000 80 chrX:6642950-6643030 1.0000 80 chrII:10390589-10390669 1.0000 80 chrV:12554339-12554419 1.0000 80 chrX:1395957-1396037 1.0000 80 chrV:5768369-5768449 1.0000 80 chrX:12422764-12422844 1.0000 80 chrIII:8780694-8780774 1.0000 80 chrIII:5078300-5078380 1.0000 80 chrV:13608692-13608772 1.0000 80 chrI:9870944-9871024 1.0000 80 chrI:5307339-5307419 1.0000 80 chrI:8010497-8010577 1.0000 80 chrX:12186318-12186398 1.0000 80 chrX:14787394-14787474 1.0000 80 chrX:7986992-7987072 1.0000 80 chrX:13920548-13920628 1.0000 80 chrX:6735645-6735725 1.0000 80 chrII:8585387-8585467 1.0000 80 chrV:11541631-11541711 1.0000 80 chrII:4089377-4089457 1.0000 80 chrIV:8535109-8535189 1.0000 80 chrV:13415593-13415673 1.0000 80 chrX:13539857-13539937 1.0000 80 chrIV:15901074-15901154 1.0000 80 chrIII:6420308-6420388 1.0000 80 chrX:14502278-14502358 1.0000 80 chrIII:11981641-11981721 1.0000 80 chrV:13907842-13907922 1.0000 80 chrIV:5764542-5764622 1.0000 80 chrIII:9275906-9275986 1.0000 80 chrV:16780695-16780775 1.0000 80 chrIV:2772519-2772599 1.0000 80 chrV:20011314-20011394 1.0000 80 chrIII:6362510-6362590 1.0000 80 chrV:9769510-9769590 1.0000 80 chrIII:12549743-12549823 1.0000 80 chrI:8606470-8606550 1.0000 80 chrV:10887609-10887689 1.0000 80 chrIII:5920166-5920246 1.0000 80 chrI:5131082-5131162 1.0000 80 chrIV:4401031-4401111 1.0000 80 chrX:9248177-9248257 1.0000 80 chrX:13356497-13356577 1.0000 80 chrV:13081341-13081421 1.0000 80 chrX:15274220-15274300 1.0000 80 chrX:12631700-12631780 1.0000 80 chrX:17068867-17068947 1.0000 80 chrV:10043412-10043492 1.0000 80 chrX:8018491-8018571 1.0000 80 chrI:4328147-4328227 1.0000 80 chrX:5846328-5846408 1.0000 80 chrIV:6879095-6879175 1.0000 80 chrI:2664254-2664334 1.0000 80 chrII:8741392-8741472 1.0000 80 chrV:11500072-11500152 1.0000 80 chrIII:7272988-7273068 1.0000 80 chrX:13377901-13377981 1.0000 80 chrV:10036439-10036519 1.0000 80 chrI:5079514-5079594 1.0000 80 chrIII:3799431-3799511 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_somi-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/somi-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.298 C 0.206 G 0.203 T 0.292 Background letter frequencies (from file dataset with add-one prior applied): A 0.298 C 0.206 G 0.203 T 0.292 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DBCACGTG MEME-1 width = 8 sites = 50 llr = 404 E-value = 2.1e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif DBCACGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 21:a:21: pos.-specific C 13a:a::: probability G 42:::8:a matrix T 34::::9: bits 2.3 * * * 2.1 * * * 1.8 *** * 1.6 *** * Relative 1.4 **** * Entropy 1.2 ****** (11.7 bits) 0.9 ****** 0.7 ****** 0.5 ****** 0.2 ******** 0.0 -------- Multilevel GTCACGTG consensus TC A sequence AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DBCACGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5826757-5826837 49 9.02e-06 ACAGTTCAAA GTCACGTG GCATTGAAGA chrIV:8028445-8028525 71 9.02e-06 CGCGCATCTT GTCACGTG CC chrIII:9083384-9083464 50 9.02e-06 GCTCAATTGT GTCACGTG ATGTCTTGCA chrX:17640942-17641022 56 1.54e-05 CACGTGTGTC GCCACGTG TGCTTCACGT chrI:6103314-6103394 63 1.54e-05 GTTTGCCCTT GCCACGTG TAAATCCCAT chrV:19524787-19524867 38 1.54e-05 AAATTTTTGA GCCACGTG GCTGGGCGGA chrIII:11981641-11981721 30 2.17e-05 CGGCCGGGAG GGCACGTG TGTTGTTGAA chrX:13147220-13147300 55 2.17e-05 GACTAGTCCT GGCACGTG GTGGGTGTTA chrIV:6879095-6879175 26 3.46e-05 TCACAGGCAA TTCACGTG AAGCAGAGCA chrIII:5920166-5920246 54 3.46e-05 TGACATACGA TTCACGTG TTCACACTTT chrIV:8535109-8535189 37 3.46e-05 TCATCCATGG TTCACGTG CCCCATGTCT chrIII:6898676-6898756 45 3.46e-05 TAAACCAAAC TTCACGTG AAGTACATGA chrIV:3654368-3654448 43 3.46e-05 CCCCGGGCGA TTCACGTG AATTTAGCCC chrV:7415931-7416011 40 3.46e-05 TTCAGTCAAT TTCACGTG TTTCCCTGAC chrIII:10290727-10290807 73 3.46e-05 ATCGAATATT TTCACGTG chrII:10390589-10390669 73 5.70e-05 TCTCAATCGT TCCACGTG chrIV:8949826-8949906 47 5.70e-05 CTCTAACAAC TCCACGTG AGACAGTTGA chrII:5282353-5282433 13 5.70e-05 CAACTACCGT ATCACGTG TTCAAGTTCC chrX:8674660-8674740 11 5.70e-05 TTAAAACCGT ATCACGTG ACTAGTATGG chrV:11802568-11802648 42 5.70e-05 CAGCGTGGCG TCCACGTG GATATGATAA chrII:15205446-15205526 47 5.70e-05 CAGCACGTGC ATCACGTG TCAtctctat chrV:5410845-5410925 18 6.64e-05 TTAGACAATG ACCACGTG TGGGAAGAGG chrII:6849475-6849555 10 9.37e-05 ATAAATGAT AGCACGTG TGATCAACAC chrV:11888102-11888182 41 9.37e-05 TTACACAGTT AGCACGTG TTCAAATAGT chrIII:8739274-8739354 63 9.37e-05 AAACTGCAAC AGCACGTG GGGAAGAAGT chrX:13113557-13113637 10 9.37e-05 AATAGACTT AGCACGTG TTCAATGTTT chrX:7986992-7987072 14 1.00e-04 TTTTCCCTAT CCCACGTG TTTACATGTA chrII:8742102-8742182 41 1.00e-04 ACCATTCATC CCCACGTG GGGTGATAAC chrII:12050845-12050925 15 1.00e-04 CAAACCATCA CCCACGTG GCTATCTTCA chrV:8026547-8026627 14 1.00e-04 ATCTCTGTGT CCCACGTG TAAGAATACG chrV:11094854-11094934 40 1.16e-04 TGATGTGATG GACACGTG GATTCGTCAG chrIII:12839125-12839205 7 1.16e-04 CCAAGA GACACGTG TGTGGGAAGA chrIII:12549743-12549823 30 1.29e-04 TCTAGTGATG GTCACATG GTGGTGGTTT chrII:10389237-10389317 18 1.29e-04 GTTCCACACA GTCACATG TCCTGTCTCT chrI:13060510-13060590 40 1.29e-04 GTACTAGACG GTCACATG GGAGTCTCTT chrV:9516443-9516523 4 1.29e-04 CTA GTCACATG GTTTTGTTAA chrX:6739195-6739275 35 1.48e-04 GTGGAATCAA GTCACGAG ATTGACAATG chrX:15706265-15706345 37 1.48e-04 TTGTTGACTA GTCACGAG TCGACTTATC chrI:10748311-10748391 36 1.63e-04 CAGACGAAAA GGCACATG ATACCCATTC chrX:6642950-6643030 11 1.70e-04 TGAGAGAGGC GGCACGAG AAGGAGAGTG chrX:8475303-8475383 28 1.70e-04 ACAGTTGATC GGCACGAG TTCAACAAAC chrII:8765298-8765378 10 1.83e-04 TACACAACC TACACGTG GGTTTTCATT chrIII:13056933-13057013 1 2.15e-04 . AACACGTG ATCCGTCGAA chrIV:9868103-9868183 17 2.48e-04 CATAAACATA ATCACATG AGAAGAATCA chrV:14725512-14725592 4 2.48e-04 TCA ATCACATG AATGAACTAG chrV:7089412-7089492 30 2.75e-04 CAATGTGTTT ACCACATG TGCGAATTAT chrIII:3799431-3799511 47 3.21e-04 TTCCCATAGA TGCACATG TTGGAAACGA chrX:8676249-8676329 22 3.76e-04 CACTATACGT TGCACGAG AACCATCTTT chrV:10953973-10954053 13 3.76e-04 CGAGCTCCGA CCCACATG AATGAAGCAC chrV:11803646-11803726 21 4.11e-04 ATTTTCAAAC CCCACGAG TCATCGTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DBCACGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5826757-5826837 9e-06 48_[+1]_24 chrIV:8028445-8028525 9e-06 70_[+1]_2 chrIII:9083384-9083464 9e-06 49_[+1]_23 chrX:17640942-17641022 1.5e-05 55_[+1]_17 chrI:6103314-6103394 1.5e-05 62_[+1]_10 chrV:19524787-19524867 1.5e-05 37_[+1]_35 chrIII:11981641-11981721 2.2e-05 29_[+1]_43 chrX:13147220-13147300 2.2e-05 54_[+1]_18 chrIV:6879095-6879175 3.5e-05 25_[+1]_47 chrIII:5920166-5920246 3.5e-05 53_[+1]_19 chrIV:8535109-8535189 3.5e-05 36_[+1]_36 chrIII:6898676-6898756 3.5e-05 44_[+1]_28 chrIV:3654368-3654448 3.5e-05 42_[+1]_30 chrV:7415931-7416011 3.5e-05 39_[+1]_33 chrIII:10290727-10290807 3.5e-05 72_[+1] chrII:10390589-10390669 5.7e-05 72_[+1] chrIV:8949826-8949906 5.7e-05 46_[+1]_26 chrII:5282353-5282433 5.7e-05 12_[+1]_60 chrX:8674660-8674740 5.7e-05 10_[+1]_62 chrV:11802568-11802648 5.7e-05 41_[+1]_31 chrII:15205446-15205526 5.7e-05 46_[+1]_26 chrV:5410845-5410925 6.6e-05 17_[+1]_55 chrII:6849475-6849555 9.4e-05 9_[+1]_63 chrV:11888102-11888182 9.4e-05 40_[+1]_32 chrIII:8739274-8739354 9.4e-05 62_[+1]_10 chrX:13113557-13113637 9.4e-05 9_[+1]_63 chrX:7986992-7987072 0.0001 13_[+1]_59 chrII:8742102-8742182 0.0001 40_[+1]_32 chrII:12050845-12050925 0.0001 14_[+1]_58 chrV:8026547-8026627 0.0001 13_[+1]_59 chrV:11094854-11094934 0.00012 39_[+1]_33 chrIII:12839125-12839205 0.00012 6_[+1]_66 chrIII:12549743-12549823 0.00013 29_[+1]_43 chrII:10389237-10389317 0.00013 17_[+1]_55 chrI:13060510-13060590 0.00013 39_[+1]_33 chrV:9516443-9516523 0.00013 3_[+1]_69 chrX:6739195-6739275 0.00015 34_[+1]_38 chrX:15706265-15706345 0.00015 36_[+1]_36 chrI:10748311-10748391 0.00016 35_[+1]_37 chrX:6642950-6643030 0.00017 10_[+1]_62 chrX:8475303-8475383 0.00017 27_[+1]_45 chrII:8765298-8765378 0.00018 9_[+1]_63 chrIII:13056933-13057013 0.00022 [+1]_72 chrIV:9868103-9868183 0.00025 16_[+1]_56 chrV:14725512-14725592 0.00025 3_[+1]_69 chrV:7089412-7089492 0.00028 29_[+1]_43 chrIII:3799431-3799511 0.00032 46_[+1]_26 chrX:8676249-8676329 0.00038 21_[+1]_51 chrV:10953973-10954053 0.00038 12_[+1]_60 chrV:11803646-11803726 0.00041 20_[+1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DBCACGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DBCACGTG width=8 seqs=50 chrI:5826757-5826837 ( 49) GTCACGTG 1 chrIV:8028445-8028525 ( 71) GTCACGTG 1 chrIII:9083384-9083464 ( 50) GTCACGTG 1 chrX:17640942-17641022 ( 56) GCCACGTG 1 chrI:6103314-6103394 ( 63) GCCACGTG 1 chrV:19524787-19524867 ( 38) GCCACGTG 1 chrIII:11981641-11981721 ( 30) GGCACGTG 1 chrX:13147220-13147300 ( 55) GGCACGTG 1 chrIV:6879095-6879175 ( 26) TTCACGTG 1 chrIII:5920166-5920246 ( 54) TTCACGTG 1 chrIV:8535109-8535189 ( 37) TTCACGTG 1 chrIII:6898676-6898756 ( 45) TTCACGTG 1 chrIV:3654368-3654448 ( 43) TTCACGTG 1 chrV:7415931-7416011 ( 40) TTCACGTG 1 chrIII:10290727-10290807 ( 73) TTCACGTG 1 chrII:10390589-10390669 ( 73) TCCACGTG 1 chrIV:8949826-8949906 ( 47) TCCACGTG 1 chrII:5282353-5282433 ( 13) ATCACGTG 1 chrX:8674660-8674740 ( 11) ATCACGTG 1 chrV:11802568-11802648 ( 42) TCCACGTG 1 chrII:15205446-15205526 ( 47) ATCACGTG 1 chrV:5410845-5410925 ( 18) ACCACGTG 1 chrII:6849475-6849555 ( 10) AGCACGTG 1 chrV:11888102-11888182 ( 41) AGCACGTG 1 chrIII:8739274-8739354 ( 63) AGCACGTG 1 chrX:13113557-13113637 ( 10) AGCACGTG 1 chrX:7986992-7987072 ( 14) CCCACGTG 1 chrII:8742102-8742182 ( 41) CCCACGTG 1 chrII:12050845-12050925 ( 15) CCCACGTG 1 chrV:8026547-8026627 ( 14) CCCACGTG 1 chrV:11094854-11094934 ( 40) GACACGTG 1 chrIII:12839125-12839205 ( 7) GACACGTG 1 chrIII:12549743-12549823 ( 30) GTCACATG 1 chrII:10389237-10389317 ( 18) GTCACATG 1 chrI:13060510-13060590 ( 40) GTCACATG 1 chrV:9516443-9516523 ( 4) GTCACATG 1 chrX:6739195-6739275 ( 35) GTCACGAG 1 chrX:15706265-15706345 ( 37) GTCACGAG 1 chrI:10748311-10748391 ( 36) GGCACATG 1 chrX:6642950-6643030 ( 11) GGCACGAG 1 chrX:8475303-8475383 ( 28) GGCACGAG 1 chrII:8765298-8765378 ( 10) TACACGTG 1 chrIII:13056933-13057013 ( 1) AACACGTG 1 chrIV:9868103-9868183 ( 17) ATCACATG 1 chrV:14725512-14725592 ( 4) ATCACATG 1 chrV:7089412-7089492 ( 30) ACCACATG 1 chrIII:3799431-3799511 ( 47) TGCACATG 1 chrX:8676249-8676329 ( 22) TGCACGAG 1 chrV:10953973-10954053 ( 13) CCCACATG 1 chrV:11803646-11803726 ( 21) CCCACGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DBCACGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 2.1e-012 -31 -78 90 -17 -190 44 12 52 -1229 228 -1229 -1229 174 -1229 -1229 -1229 -1229 228 -1229 -1229 -58 -1229 198 -1229 -131 -1229 -1229 159 -1229 -1229 230 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DBCACGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 2.1e-012 0.240000 0.120000 0.380000 0.260000 0.080000 0.280000 0.220000 0.420000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.120000 0.000000 0.000000 0.880000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DBCACGTG MEME-1 regular expression -------------------------------------------------------------------------------- [GTA][TCG]CAC[GA]TG -------------------------------------------------------------------------------- Time 9.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CTYTTTYT MEME-2 width = 8 sites = 88 llr = 599 E-value = 3.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C 9:423:53 probability G :::::::: matrix T 18687a57 bits 2.3 2.1 1.8 * 1.6 * * Relative 1.4 * * Entropy 1.2 ** *** (9.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTTTTTT consensus C C CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13539857-13539937 66 2.63e-05 CAATCTTCAA CTTTTTCT TCGACAC chrIII:8739274-8739354 27 2.63e-05 TCTTATCTCT CTTTTTCT ATCGTTTTTT chrX:10688500-10688580 27 2.63e-05 TACGTCTATA CTTTTTCT TCATGTCTCG chrIII:11738668-11738748 45 2.63e-05 GCTTTCTGGT CTTTTTCT TTTTGTGACA chrX:13356497-13356577 19 8.21e-05 AAAACTTCCG CTCTTTCT TCTCATCGAG chrX:12186318-12186398 53 8.21e-05 CCCACTGTGA CTTTTTTT TTTGGAAAAA chrII:10390589-10390669 32 8.21e-05 GTGTTCTTCT CTTTTTTT CGATTTAGGT chrII:10389237-10389317 66 8.21e-05 CGCAGACGTT CTTTTTTT TTCACTT chrII:6176631-6176711 66 8.21e-05 TTTCGATTCC CTTTTTTT GGTTCAT chrX:10168668-10168748 44 8.21e-05 GACGGATTCA CTTTTTTT TTTCAAAACC chrX:8676249-8676329 49 8.21e-05 TTTTTCATTT CTTTTTTT ACAATCCATC chrI:13060510-13060590 53 8.21e-05 ACATGGGAGT CTCTTTCT TCCACACAGT chrIV:17474264-17474344 6 8.21e-05 CAAAA CTTTTTTT TGAGGGGCGC chrIV:4018978-4019058 12 8.21e-05 ATTTTTTTTC CTTTTTTT CAGCGGTTAT chrI:7740020-7740100 16 8.21e-05 TTGCGTCAAA CTTTTTTT TCTGGAAAAA chrIV:6099965-6100045 64 8.21e-05 AGTCAATACT CTTTTTTT TCCCTCGAT chrIII:10241390-10241470 66 8.21e-05 ACGTATTTCT CTCTTTCT AAGCCAT chrV:11803646-11803726 51 8.21e-05 TCCATTATCG CTTTTTTT CAAAAAAAAA chrIII:7272988-7273068 57 1.27e-04 AATAGAAACA CTTTTTCC CAGAGGAGAT chrII:8813714-8813794 51 1.27e-04 CTAGCCCCTC CTCTTTTT GAGAATCACA chrIII:8654708-8654788 58 1.27e-04 TGTTTTTCAT CTCTTTTT TCACTGGTTG chrIV:12009428-12009508 18 1.27e-04 CTTGTTTACA CTTTTTCC CAGGTATCCC chrX:15345853-15345933 52 1.27e-04 CGCTTCTCTT CTTTTTCC ATTTTTTTTT chrX:8018491-8018571 2 1.85e-04 A CTTTTTTC GATACACTAT chrIII:6362510-6362590 20 1.85e-04 GACACACGCA CTTTTTTC GTTTACCAAA chrX:6642950-6643030 50 1.85e-04 TCCCTACCAA CTTTTTTC TATCGTTTCA chrX:15634026-15634106 71 1.85e-04 GAAGACGTCA CTTTTTTC TC chrIII:3799431-3799511 1 2.24e-04 . ctctctct ctcCAATTCA chrIV:4401031-4401111 69 2.24e-04 GTAtctctct ctctctct ctct chrIII:12849391-12849471 21 2.24e-04 CTGTGAAACC CTTTCTTT CGGAAAAGTA chrIV:11899467-11899547 72 2.24e-04 TGTATCAtct ctctctct c chrII:15205446-15205526 69 2.24e-04 ctctatttct ctctctct ctct chrX:12761419-12761499 20 2.24e-04 TTTTCTCTCT CTCTCTCT ATATATCACG chrX:5820194-5820274 48 2.24e-04 ATTATCCATA CTCTCTCT CACCCCACAC chrIV:15398776-15398856 5 2.24e-04 ctct ctctctct ctctcCACTA chrIV:664239-664319 10 2.43e-04 TTCGTCCTT CTCTTTTC TTGTTCCTGC chrX:10689841-10689921 29 2.43e-04 GTTTTTGCGT CTCTTTTC AATTTCCTAT chrX:9147160-9147240 55 2.43e-04 GTTCCGGCGC CTCTTTTC ACAACGAATG chrII:8707090-8707170 66 2.43e-04 AAACGTCTCA CTCTTTTC TATTTGC chrV:10043412-10043492 23 2.75e-04 CCGCCTCTTC CTTTCTCC TCGTGATGAT chrV:2076149-2076229 11 2.75e-04 TTCTCCTCTT CTCTCTTT CCAAAGAGCA chrII:2804432-2804512 28 2.75e-04 GCACATTTTC CTCTCTTT TCTCTCTATT chrIV:11491524-11491604 57 2.75e-04 GCGCCGCGGT CTCTCTTT CAACGACGAC chrI:2664254-2664334 39 3.02e-04 TTTCTTGCAT CTTTCTTC CGTTTTTTTT chrII:11713839-11713919 51 3.02e-04 CCATTGAGCC CTCTCTCC GGCAGAGCAG chrV:11500072-11500152 45 3.21e-04 TTGACTACTT CTTCTTCT TTtgctgatg chrV:9769510-9769590 16 3.21e-04 TATTTGACAG cttcttct ttccgtcttc chrIII:9275906-9275986 41 3.21e-04 ATTACACGAC CTTCTTCT CATTTTCTCG chrI:42167-42247 8 3.21e-04 AGTGTCT CTTCTTCT CCTCCGACCT chrII:1502127-1502207 29 3.21e-04 CACGGCTCTT CTTCTTCT GTTTCCGTCA chrII:3956906-3956986 43 3.21e-04 TCATCGGACt cttcttct cattcttctt chrV:19524787-19524867 8 3.21e-04 CCCCGAG CTTCTTCT TCTTCTTCCA chrIV:5764542-5764622 8 3.34e-04 TAGAACC CTCTCTTC GCGTGGTATA chrX:13920548-13920628 1 4.00e-04 . CTCCTTCT AAGCGAATTC chrV:12554339-12554419 48 4.00e-04 TCTATCATCT CATTTTCT TCATGTTTTC chrX:9608252-9608332 1 4.00e-04 . CATTTTCT AATCAAATGA chrX:13147220-13147300 18 4.89e-04 TTCATCTTTT CATTTTTT GGCATATCAT chrV:15708144-15708224 39 4.89e-04 TGGTAAGTTA CATTTTTT CGATAGGTGG chrIII:8987119-8987199 22 4.89e-04 ttctcccatt catttttt attATCCAAT chrV:11118475-11118555 73 4.89e-04 CATACAACAA CATTTTTT chrII:4089377-4089457 41 5.76e-04 CTCCTCTTAT CATTTTCC GCCACTATCA chrI:7759171-7759251 3 5.76e-04 CC CATTTTCC CATTGTCCTA chrV:6045540-6045620 26 5.76e-04 AAACACATTT CATTTTCC TTAACAACTC chrIV:309635-309715 61 5.76e-04 GAAAACGTGA CTTCTTTC ATTCTTTGAA chrX:16735203-16735283 45 5.76e-04 TCCCCTTCTC CTCCTTCC AAGTTTTATC chrI:8869246-8869326 31 5.76e-04 CTGATTCATT CACTTTTT TGTTTCATCT chrV:6238524-6238604 62 5.76e-04 TTTCGTCCCC CACTTTTT ATATTCTCAT chrIV:6879095-6879175 9 6.22e-04 CTCGACTG CTCCCTCT CACAGGCAAT chrI:7573999-7574079 17 6.22e-04 AGGGAAACCC CTTCCTTT ATTGATTGAG chrX:9248177-9248257 42 6.76e-04 GTTTACTATA CATTTTTC AGGTGATTCT chrX:13113557-13113637 69 6.76e-04 TTTCACCCCT CATTTTTC AAAT chrIII:12549743-12549823 3 7.75e-04 CT CTTCCTCC CACATATTCT chrI:2667979-2668059 1 7.75e-04 . TTTTTTCT TTCGTCACGT chrV:11094854-11094934 23 7.75e-04 CAGAATTTCT CACTCTCT GATGTGATGG chrIII:4100086-4100166 63 7.94e-04 CATGTGATCA CACTTTTC ATAAAAAATA chrIV:2772519-2772599 52 9.25e-04 TGGAGACAAT TTTTTTTT GGGAACAATG chrII:10446401-10446481 45 9.25e-04 ATCATTTATT CACTCTTT CATTGCCAAC chrIII:6148623-6148703 66 9.25e-04 ATTCCCCAGG TTTTTTTT CAGAAAA chrIV:5666416-5666496 64 9.25e-04 GAGAATGGAT TTTTTTTT CGAACGCTT chrV:5697807-5697887 41 9.25e-04 GTTGTTGTTT CTTCCTTC CGTCGAGAGT chrX:9403842-9403922 3 1.07e-03 TC TTTTCTCT TGGCAAACTG chrIII:7358855-7358935 16 1.07e-03 CATCCAACAC TTTTCTCT TGGGACACCG chrX:12631700-12631780 10 1.14e-03 TCAATTCAA TTTTTTTC GTTCAACAAG chrIII:10717635-10717715 61 1.24e-03 ACTTTTTCAT TTTTCTTT TGTATTTTTC chrI:5997495-5997575 60 1.24e-03 GAAGCGGATC TTCTCTCT CGGGCGGTAC chrII:6909811-6909891 58 1.24e-03 TTAAAAAGGA TTTTCTTT AATTTGTTCC chrX:2070825-2070905 48 1.26e-03 TCAACAGTTG TTCTTTTC AGTGTAACTG chrIII:6898676-6898756 15 1.42e-03 GTCTTATGAT TTCTCTCC ACAGATATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13539857-13539937 2.6e-05 65_[+2]_7 chrIII:8739274-8739354 2.6e-05 26_[+2]_46 chrX:10688500-10688580 2.6e-05 26_[+2]_46 chrIII:11738668-11738748 2.6e-05 44_[+2]_28 chrX:13356497-13356577 8.2e-05 18_[+2]_54 chrX:12186318-12186398 8.2e-05 52_[+2]_20 chrII:10390589-10390669 8.2e-05 31_[+2]_41 chrII:10389237-10389317 8.2e-05 65_[+2]_7 chrII:6176631-6176711 8.2e-05 65_[+2]_7 chrX:10168668-10168748 8.2e-05 43_[+2]_29 chrX:8676249-8676329 8.2e-05 48_[+2]_24 chrI:13060510-13060590 8.2e-05 52_[+2]_20 chrIV:17474264-17474344 8.2e-05 5_[+2]_67 chrIV:4018978-4019058 8.2e-05 11_[+2]_61 chrI:7740020-7740100 8.2e-05 15_[+2]_57 chrIV:6099965-6100045 8.2e-05 63_[+2]_9 chrIII:10241390-10241470 8.2e-05 65_[+2]_7 chrV:11803646-11803726 8.2e-05 50_[+2]_22 chrIII:7272988-7273068 0.00013 56_[+2]_16 chrII:8813714-8813794 0.00013 50_[+2]_22 chrIII:8654708-8654788 0.00013 57_[+2]_15 chrIV:12009428-12009508 0.00013 17_[+2]_55 chrX:15345853-15345933 0.00013 51_[+2]_21 chrX:8018491-8018571 0.00018 1_[+2]_71 chrIII:6362510-6362590 0.00018 19_[+2]_53 chrX:6642950-6643030 0.00018 49_[+2]_23 chrX:15634026-15634106 0.00018 70_[+2]_2 chrIII:3799431-3799511 0.00022 [+2]_72 chrIV:4401031-4401111 0.00022 68_[+2]_4 chrIII:12849391-12849471 0.00022 20_[+2]_52 chrIV:11899467-11899547 0.00022 71_[+2]_1 chrII:15205446-15205526 0.00022 68_[+2]_4 chrX:12761419-12761499 0.00022 19_[+2]_53 chrX:5820194-5820274 0.00022 47_[+2]_25 chrIV:15398776-15398856 0.00022 4_[+2]_68 chrIV:664239-664319 0.00024 9_[+2]_63 chrX:10689841-10689921 0.00024 28_[+2]_44 chrX:9147160-9147240 0.00024 54_[+2]_18 chrII:8707090-8707170 0.00024 65_[+2]_7 chrV:10043412-10043492 0.00027 22_[+2]_50 chrV:2076149-2076229 0.00027 10_[+2]_62 chrII:2804432-2804512 0.00027 27_[+2]_45 chrIV:11491524-11491604 0.00027 56_[+2]_16 chrI:2664254-2664334 0.0003 38_[+2]_34 chrII:11713839-11713919 0.0003 50_[+2]_22 chrV:11500072-11500152 0.00032 44_[+2]_28 chrV:9769510-9769590 0.00032 15_[+2]_57 chrIII:9275906-9275986 0.00032 40_[+2]_32 chrI:42167-42247 0.00032 7_[+2]_65 chrII:1502127-1502207 0.00032 28_[+2]_44 chrII:3956906-3956986 0.00032 42_[+2]_30 chrV:19524787-19524867 0.00032 7_[+2]_65 chrIV:5764542-5764622 0.00033 7_[+2]_65 chrX:13920548-13920628 0.0004 [+2]_72 chrV:12554339-12554419 0.0004 47_[+2]_25 chrX:9608252-9608332 0.0004 [+2]_72 chrX:13147220-13147300 0.00049 17_[+2]_55 chrV:15708144-15708224 0.00049 38_[+2]_34 chrIII:8987119-8987199 0.00049 21_[+2]_51 chrV:11118475-11118555 0.00049 72_[+2] chrII:4089377-4089457 0.00058 40_[+2]_32 chrI:7759171-7759251 0.00058 2_[+2]_70 chrV:6045540-6045620 0.00058 25_[+2]_47 chrIV:309635-309715 0.00058 60_[+2]_12 chrX:16735203-16735283 0.00058 44_[+2]_28 chrI:8869246-8869326 0.00058 30_[+2]_42 chrV:6238524-6238604 0.00058 61_[+2]_11 chrIV:6879095-6879175 0.00062 8_[+2]_64 chrI:7573999-7574079 0.00062 16_[+2]_56 chrX:9248177-9248257 0.00068 41_[+2]_31 chrX:13113557-13113637 0.00068 68_[+2]_4 chrIII:12549743-12549823 0.00078 2_[+2]_70 chrI:2667979-2668059 0.00078 [+2]_72 chrV:11094854-11094934 0.00078 22_[+2]_50 chrIII:4100086-4100166 0.00079 62_[+2]_10 chrIV:2772519-2772599 0.00093 51_[+2]_21 chrII:10446401-10446481 0.00093 44_[+2]_28 chrIII:6148623-6148703 0.00093 65_[+2]_7 chrIV:5666416-5666496 0.00093 63_[+2]_9 chrV:5697807-5697887 0.00093 40_[+2]_32 chrX:9403842-9403922 0.0011 2_[+2]_70 chrIII:7358855-7358935 0.0011 15_[+2]_57 chrX:12631700-12631780 0.0011 9_[+2]_63 chrIII:10717635-10717715 0.0012 60_[+2]_12 chrI:5997495-5997575 0.0012 59_[+2]_13 chrII:6909811-6909891 0.0012 57_[+2]_15 chrX:2070825-2070905 0.0013 47_[+2]_25 chrIII:6898676-6898756 0.0014 14_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTYTTTYT width=8 seqs=88 chrX:13539857-13539937 ( 66) CTTTTTCT 1 chrIII:8739274-8739354 ( 27) CTTTTTCT 1 chrX:10688500-10688580 ( 27) CTTTTTCT 1 chrIII:11738668-11738748 ( 45) CTTTTTCT 1 chrX:13356497-13356577 ( 19) CTCTTTCT 1 chrX:12186318-12186398 ( 53) CTTTTTTT 1 chrII:10390589-10390669 ( 32) CTTTTTTT 1 chrII:10389237-10389317 ( 66) CTTTTTTT 1 chrII:6176631-6176711 ( 66) CTTTTTTT 1 chrX:10168668-10168748 ( 44) CTTTTTTT 1 chrX:8676249-8676329 ( 49) CTTTTTTT 1 chrI:13060510-13060590 ( 53) CTCTTTCT 1 chrIV:17474264-17474344 ( 6) CTTTTTTT 1 chrIV:4018978-4019058 ( 12) CTTTTTTT 1 chrI:7740020-7740100 ( 16) CTTTTTTT 1 chrIV:6099965-6100045 ( 64) CTTTTTTT 1 chrIII:10241390-10241470 ( 66) CTCTTTCT 1 chrV:11803646-11803726 ( 51) CTTTTTTT 1 chrIII:7272988-7273068 ( 57) CTTTTTCC 1 chrII:8813714-8813794 ( 51) CTCTTTTT 1 chrIII:8654708-8654788 ( 58) CTCTTTTT 1 chrIV:12009428-12009508 ( 18) CTTTTTCC 1 chrX:15345853-15345933 ( 52) CTTTTTCC 1 chrX:8018491-8018571 ( 2) CTTTTTTC 1 chrIII:6362510-6362590 ( 20) CTTTTTTC 1 chrX:6642950-6643030 ( 50) CTTTTTTC 1 chrX:15634026-15634106 ( 71) CTTTTTTC 1 chrIII:3799431-3799511 ( 1) CTCTCTCT 1 chrIV:4401031-4401111 ( 69) CTCTCTCT 1 chrIII:12849391-12849471 ( 21) CTTTCTTT 1 chrIV:11899467-11899547 ( 72) CTCTCTCT 1 chrII:15205446-15205526 ( 69) CTCTCTCT 1 chrX:12761419-12761499 ( 20) CTCTCTCT 1 chrX:5820194-5820274 ( 48) CTCTCTCT 1 chrIV:15398776-15398856 ( 5) CTCTCTCT 1 chrIV:664239-664319 ( 10) CTCTTTTC 1 chrX:10689841-10689921 ( 29) CTCTTTTC 1 chrX:9147160-9147240 ( 55) CTCTTTTC 1 chrII:8707090-8707170 ( 66) CTCTTTTC 1 chrV:10043412-10043492 ( 23) CTTTCTCC 1 chrV:2076149-2076229 ( 11) CTCTCTTT 1 chrII:2804432-2804512 ( 28) CTCTCTTT 1 chrIV:11491524-11491604 ( 57) CTCTCTTT 1 chrI:2664254-2664334 ( 39) CTTTCTTC 1 chrII:11713839-11713919 ( 51) CTCTCTCC 1 chrV:11500072-11500152 ( 45) CTTCTTCT 1 chrV:9769510-9769590 ( 16) CTTCTTCT 1 chrIII:9275906-9275986 ( 41) CTTCTTCT 1 chrI:42167-42247 ( 8) CTTCTTCT 1 chrII:1502127-1502207 ( 29) CTTCTTCT 1 chrII:3956906-3956986 ( 43) CTTCTTCT 1 chrV:19524787-19524867 ( 8) CTTCTTCT 1 chrIV:5764542-5764622 ( 8) CTCTCTTC 1 chrX:13920548-13920628 ( 1) CTCCTTCT 1 chrV:12554339-12554419 ( 48) CATTTTCT 1 chrX:9608252-9608332 ( 1) CATTTTCT 1 chrX:13147220-13147300 ( 18) CATTTTTT 1 chrV:15708144-15708224 ( 39) CATTTTTT 1 chrIII:8987119-8987199 ( 22) CATTTTTT 1 chrV:11118475-11118555 ( 73) CATTTTTT 1 chrII:4089377-4089457 ( 41) CATTTTCC 1 chrI:7759171-7759251 ( 3) CATTTTCC 1 chrV:6045540-6045620 ( 26) CATTTTCC 1 chrIV:309635-309715 ( 61) CTTCTTTC 1 chrX:16735203-16735283 ( 45) CTCCTTCC 1 chrI:8869246-8869326 ( 31) CACTTTTT 1 chrV:6238524-6238604 ( 62) CACTTTTT 1 chrIV:6879095-6879175 ( 9) CTCCCTCT 1 chrI:7573999-7574079 ( 17) CTTCCTTT 1 chrX:9248177-9248257 ( 42) CATTTTTC 1 chrX:13113557-13113637 ( 69) CATTTTTC 1 chrIII:12549743-12549823 ( 3) CTTCCTCC 1 chrI:2667979-2668059 ( 1) TTTTTTCT 1 chrV:11094854-11094934 ( 23) CACTCTCT 1 chrIII:4100086-4100166 ( 63) CACTTTTC 1 chrIV:2772519-2772599 ( 52) TTTTTTTT 1 chrII:10446401-10446481 ( 45) CACTCTTT 1 chrIII:6148623-6148703 ( 66) TTTTTTTT 1 chrIV:5666416-5666496 ( 64) TTTTTTTT 1 chrV:5697807-5697887 ( 41) CTTCCTTC 1 chrX:9403842-9403922 ( 3) TTTTCTCT 1 chrIII:7358855-7358935 ( 16) TTTTCTCT 1 chrX:12631700-12631780 ( 10) TTTTTTTC 1 chrIII:10717635-10717715 ( 61) TTTTCTTT 1 chrI:5997495-5997575 ( 60) TTCTCTCT 1 chrII:6909811-6909891 ( 58) TTTTCTTT 1 chrX:2070825-2070905 ( 48) TTCTTTTC 1 chrIII:6898676-6898756 ( 15) TTCTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.56875 E= 3.9e-005 -1310 207 -1310 -110 -72 -1310 -1310 149 -1310 82 -1310 112 -1310 -37 -1310 152 -1310 57 -1310 125 -1310 -1310 -1310 177 -1310 118 -1310 87 -1310 62 -1310 122 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 3.9e-005 0.000000 0.863636 0.000000 0.136364 0.181818 0.000000 0.000000 0.818182 0.000000 0.363636 0.000000 0.636364 0.000000 0.159091 0.000000 0.840909 0.000000 0.306818 0.000000 0.693182 0.000000 0.000000 0.000000 1.000000 0.000000 0.465909 0.000000 0.534091 0.000000 0.318182 0.000000 0.681818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTTYT MEME-2 regular expression -------------------------------------------------------------------------------- CT[TC]T[TC]T[TC][TC] -------------------------------------------------------------------------------- Time 13.52 secs. ******************************************************************************** ******************************************************************************** MOTIF RARARAAA MEME-3 width = 8 sites = 88 llr = 600 E-value = 1.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif RARARAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4a5a6877 pos.-specific C :::::::: probability G 6:5:4233 matrix T :::::::: bits 2.3 2.1 1.8 * * 1.6 * * Relative 1.4 * * Entropy 1.2 ** * *** (9.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAAA consensus A G GGGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5079514-5079594 5 2.89e-05 TTTA GAGAAAAA AGAACGCAAT chrX:13356497-13356577 34 2.89e-05 TCTTCTCATC GAGAAAAA AGTTAAGTGT chrIV:2772519-2772599 3 2.89e-05 TA GAGAAAAA GGTCATGACA chrII:8585387-8585467 20 2.89e-05 AGATGATTCA GAGAAAAA ACACGACGAA chrV:9270588-9270668 44 2.89e-05 TAGGAAGAGA GAGAAAAA GGGGAATTCT chrX:16775573-16775653 68 2.89e-05 AAACGTGAGC GAGAAAAA AGTCA chrX:12631700-12631780 27 9.09e-05 CGTTCAACAA GAAAAAAA ACAGCAAAAC chrIII:6420308-6420388 3 9.09e-05 AA GAGAGAAA ATGAACGAAC chrX:12186318-12186398 65 9.09e-05 TTTTTTTTTG GAAAAAAA CGAAAGAA chrI:8010497-8010577 5 9.09e-05 ggga gagagaaa tatagataaa chrI:3956732-3956812 31 9.09e-05 GAAATTTCTG GAAAAAAA TGAATAAAAC chrI:5314820-5314900 47 9.09e-05 gaacggaaag gaaaaaaa aagaaatgat chrV:11922331-11922411 63 9.09e-05 CAATTTGAAA GAAAAAAA ACATTTATCT chrV:11615014-11615094 65 9.09e-05 CCAGTGTGGA GAAAAAAA AGAAACGA chrX:1124285-1124365 31 9.09e-05 GAAAATGATA GAAAAAAA ACAAGATTGA chrII:9493374-9493454 46 9.09e-05 GAAAAAGTGT GAAAAAAA AAAGAAAAGT chrIV:17474264-17474344 65 9.09e-05 AGACTGTGCG GAAAAAAA AGACGGAA chrI:10750076-10750156 67 9.09e-05 CAACCAACGA GAAAAAAA AGCATT chrII:5282982-5283062 43 9.09e-05 AAGGCAGACA GAAAAAAA AATGAGACGA chrII:8765298-8765378 67 9.09e-05 Ggaagaaatt gaaaaaaa tacgaa chrI:5307339-5307419 40 1.20e-04 AGCACCTCGA GAAAGAAA CTGACAGGCA chrX:12422764-12422844 50 1.20e-04 AGTTTTGATG GAAAGAAA TGTGTGACTG chrI:9541251-9541331 61 1.20e-04 GGAGAGTAGG GAAAGAAA TTGAAGAAGC chrII:5605583-5605663 10 1.59e-04 TTGAAACGG GAGAAAAG AACCTATCTT chrV:8040870-8040950 8 1.59e-04 TGGATCA GAGAAAGA TCTCGATCTT chrIII:7271293-7271373 49 1.59e-04 ATAAGAAAAT GAGAAAGA ACATGTGATG chrX:13744878-13744958 39 1.59e-04 AGAGTGAAAA GAGAAAAG AAGCATACTG chrIII:12549743-12549823 72 2.86e-04 AGTGATGGAa gagagaga g chrIII:5078300-5078380 48 2.86e-04 TGATAATAAA AAGAAAAA GAAGAGAGCT chrV:12554339-12554419 4 2.86e-04 AGG AAGAAAAA AGAGAAATGG chrV:3686008-3686088 43 2.86e-04 AAAATTTCAG GAAAAAAG GTTTTAAGAG chrX:9403842-9403922 32 2.86e-04 CAACTTTAGC GAAAAAAG GGTAAAACGA chrI:7573999-7574079 32 2.86e-04 TTTATTGATT GAGAGAGA CCCTGTGTTG chrI:12055239-12055319 20 2.86e-04 tgtttataga gagagaga gagagagagt chrI:7740020-7740100 28 2.86e-04 TTTTTTTCTG GAAAAAAG AAGCAGCTTC chrX:12425683-12425763 33 2.86e-04 GAGACAAGCC GAGAGAAG ATGATCAAAA chrII:15205446-15205526 1 2.86e-04 . AAGAAAAA AGTGATCGGA chrIV:5216490-5216570 6 2.86e-04 AAGAG AAGAAAAA GACAACAAGT chrII:13293030-13293110 66 2.86e-04 AAAAAGAAAA AAGAAAAA AGAGATA chrIII:4100086-4100166 7 3.06e-04 TCAAAG GAGAAGAA AGTACGAAGT chrI:10105588-10105668 66 3.06e-04 CACACGTTCT GAGAAGAA TGGATGC chrX:15274220-15274300 12 4.36e-04 CCTTGCGGCA AAAAAAAA TGGAAAGTGG chrIV:15901074-15901154 56 4.36e-04 TTTTTTACAA AAAAAAAA TGATGCTTCA chrII:4748454-4748534 6 4.36e-04 TCAAC AAAAAAAA GAAGAATAGA chrI:5025504-5025584 35 4.36e-04 ACAGAAAAGG GAAAGAAG ATCGATGTGT chrI:3986650-3986730 26 4.36e-04 ATCGATTTCA AAAAAAAA AGTACCTTCG chrI:11840811-11840891 51 4.36e-04 TAAATTTTCC AAAAAAAA ATATTTCTTC chrX:17640942-17641022 19 4.36e-04 ACCGCTGGAG GAAAGAAG AAAGGGGGGA chrIII:13056933-13057013 39 4.36e-04 ACGGTATACA AAAAAAAA CTTGTGACAT chrI:10104338-10104418 17 4.36e-04 GCGGGAGAAT AAAAAAAA CGAGGTGTTG chrV:2076149-2076229 71 4.36e-04 CCGGAAGCTC AAGAGAAA AC chrII:2804432-2804512 59 4.36e-04 GGAGAAAACT AAAAAAAA ATTTTTTTTT chrX:12761419-12761499 63 4.36e-04 TTACACGAGG AAGAGAAA CTCAAAAAAA chrIV:9868103-9868183 41 4.36e-04 ATCAAAAAGG AAGAGAAA ACTCTAGAGA chrI:12501415-12501495 25 4.36e-04 CGAATTCGGG GAAAGAGA TATTTTCGAA chrII:8259903-8259983 29 4.36e-04 AATGGGTCAA AAGAGAAA TTGAATTTCT chrV:11616033-11616113 58 4.36e-04 GAGAATTTTC GAAAGAAG AAGTCAGTTT chrV:11803646-11803726 61 4.36e-04 CTTTTTTTCA AAAAAAAA ATTACGGGAA chrX:15634026-15634106 56 4.78e-04 TTGTGGAGAG GAGAGGAA GACGTCACTT chrV:10005527-10005607 35 4.78e-04 CAAAGAGCTC GAAAAGAA GTTCCTCATT chrI:4328147-4328227 66 5.34e-04 ATAAGGGTCA AAAAGAAA ACTGATT chrII:10574556-10574636 2 5.34e-04 G AAAAGAAA TTGCGATGAC chrII:10016272-10016352 8 5.34e-04 GCACAAA AAAAGAAA CACGGGGCGC chrX:6642950-6643030 2 6.40e-04 T GAGAGAGG CGGCACGAGA chrI:42167-42247 69 6.40e-04 TTGTAATACa gagagagg gaca chrV:4820923-4821003 65 6.40e-04 GCGACGGAGC AAGAAAAG ATCAATCC chrX:15395855-15395935 61 6.40e-04 AATGAGGAGC GAAAAAGG AAGAAGACGG chrI:5997495-5997575 35 6.67e-04 TAACCCAATA GAGAAGAG AATCAGAGAA chrIV:6751418-6751498 2 6.67e-04 C GAGAAGGA CCTAGAACAC chrII:8741392-8741472 26 8.04e-04 TGTCAAGGTA AAGAGAAG ACTTCTCTCG chrX:17068867-17068947 53 8.04e-04 AGACCTTGGC AAAAAAAG CAAAAAGGCG chrIII:8983881-8983961 21 8.04e-04 AGGCAATGAT AAGAGAGA TAGTGAGAGT chrV:6238524-6238604 28 8.04e-04 TGCACTCAAC AAAAAAAG GCGGAAGAAC chrI:7759171-7759251 29 8.91e-04 TATTAAGCAA GAGAGGGA GACAATTCTC chrX:8674660-8674740 31 8.91e-04 TAGTATGGCT GAGAGGGA AACCCTTTAG chrIII:7272988-7273068 29 1.04e-03 TTTTGATATG GAAAGGGA ATTTCTAAAA chrV:6994145-6994225 16 1.09e-03 TGTGTTAGTG AAAAGGAA GTATAAACTT chrV:5832964-5833044 61 1.09e-03 CGACAGTCAA AAAAGGAA GTGTGGAATG chrX:13812178-13812258 26 1.09e-03 GAAACGCACA GAGAAGGG TGGGGGGGGG chrX:14787394-14787474 53 1.14e-03 ATTGTATGGT AAAAAAGG ATATCATCAA chrX:9608252-9608332 28 1.20e-03 AATTGAGGAC AAGAAGAG ATATCAAAAC chrII:11713839-11713919 10 1.20e-03 CACATTTCC GAAAAGGG CCTCGTTTTC chrIV:1723402-1723482 42 1.20e-03 TGTGAATCGT GAAAAGGG CATGGCATTT chrV:11802568-11802648 58 1.20e-03 TGGATATGAT AAGAAGGA CAAAGTCCTG chrII:6889814-6889894 60 1.20e-03 TGTGTCCGGT GAAAAGGG AGTTTGATCT chrII:6909811-6909891 50 1.31e-03 TAAATCAATT AAAAAGGA TTTTCTTTAA chrIII:8654708-8654788 6 1.35e-03 GCGGT AAAAGGGA TGATCTTCAA chrV:13202394-13202474 73 1.36e-03 ATAAAAAAGT AAGAAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5079514-5079594 2.9e-05 4_[+3]_68 chrX:13356497-13356577 2.9e-05 33_[+3]_39 chrIV:2772519-2772599 2.9e-05 2_[+3]_70 chrII:8585387-8585467 2.9e-05 19_[+3]_53 chrV:9270588-9270668 2.9e-05 43_[+3]_29 chrX:16775573-16775653 2.9e-05 67_[+3]_5 chrX:12631700-12631780 9.1e-05 26_[+3]_46 chrIII:6420308-6420388 9.1e-05 2_[+3]_70 chrX:12186318-12186398 9.1e-05 64_[+3]_8 chrI:8010497-8010577 9.1e-05 4_[+3]_68 chrI:3956732-3956812 9.1e-05 30_[+3]_42 chrI:5314820-5314900 9.1e-05 46_[+3]_26 chrV:11922331-11922411 9.1e-05 62_[+3]_10 chrV:11615014-11615094 9.1e-05 64_[+3]_8 chrX:1124285-1124365 9.1e-05 30_[+3]_42 chrII:9493374-9493454 9.1e-05 45_[+3]_27 chrIV:17474264-17474344 9.1e-05 64_[+3]_8 chrI:10750076-10750156 9.1e-05 66_[+3]_6 chrII:5282982-5283062 9.1e-05 42_[+3]_30 chrII:8765298-8765378 9.1e-05 66_[+3]_6 chrI:5307339-5307419 0.00012 39_[+3]_33 chrX:12422764-12422844 0.00012 49_[+3]_23 chrI:9541251-9541331 0.00012 60_[+3]_12 chrII:5605583-5605663 0.00016 9_[+3]_63 chrV:8040870-8040950 0.00016 7_[+3]_65 chrIII:7271293-7271373 0.00016 48_[+3]_24 chrX:13744878-13744958 0.00016 38_[+3]_34 chrIII:12549743-12549823 0.00029 71_[+3]_1 chrIII:5078300-5078380 0.00029 47_[+3]_25 chrV:12554339-12554419 0.00029 3_[+3]_69 chrV:3686008-3686088 0.00029 42_[+3]_30 chrX:9403842-9403922 0.00029 31_[+3]_41 chrI:7573999-7574079 0.00029 31_[+3]_41 chrI:12055239-12055319 0.00029 19_[+3]_53 chrI:7740020-7740100 0.00029 27_[+3]_45 chrX:12425683-12425763 0.00029 32_[+3]_40 chrII:15205446-15205526 0.00029 [+3]_72 chrIV:5216490-5216570 0.00029 5_[+3]_67 chrII:13293030-13293110 0.00029 65_[+3]_7 chrIII:4100086-4100166 0.00031 6_[+3]_66 chrI:10105588-10105668 0.00031 65_[+3]_7 chrX:15274220-15274300 0.00044 11_[+3]_61 chrIV:15901074-15901154 0.00044 55_[+3]_17 chrII:4748454-4748534 0.00044 5_[+3]_67 chrI:5025504-5025584 0.00044 34_[+3]_38 chrI:3986650-3986730 0.00044 25_[+3]_47 chrI:11840811-11840891 0.00044 50_[+3]_22 chrX:17640942-17641022 0.00044 18_[+3]_54 chrIII:13056933-13057013 0.00044 38_[+3]_34 chrI:10104338-10104418 0.00044 16_[+3]_56 chrV:2076149-2076229 0.00044 70_[+3]_2 chrII:2804432-2804512 0.00044 58_[+3]_14 chrX:12761419-12761499 0.00044 62_[+3]_10 chrIV:9868103-9868183 0.00044 40_[+3]_32 chrI:12501415-12501495 0.00044 24_[+3]_48 chrII:8259903-8259983 0.00044 28_[+3]_44 chrV:11616033-11616113 0.00044 57_[+3]_15 chrV:11803646-11803726 0.00044 60_[+3]_12 chrX:15634026-15634106 0.00048 55_[+3]_17 chrV:10005527-10005607 0.00048 34_[+3]_38 chrI:4328147-4328227 0.00053 65_[+3]_7 chrII:10574556-10574636 0.00053 1_[+3]_71 chrII:10016272-10016352 0.00053 7_[+3]_65 chrX:6642950-6643030 0.00064 1_[+3]_71 chrI:42167-42247 0.00064 68_[+3]_4 chrV:4820923-4821003 0.00064 64_[+3]_8 chrX:15395855-15395935 0.00064 60_[+3]_12 chrI:5997495-5997575 0.00067 34_[+3]_38 chrIV:6751418-6751498 0.00067 1_[+3]_71 chrII:8741392-8741472 0.0008 25_[+3]_47 chrX:17068867-17068947 0.0008 52_[+3]_20 chrIII:8983881-8983961 0.0008 20_[+3]_52 chrV:6238524-6238604 0.0008 27_[+3]_45 chrI:7759171-7759251 0.00089 28_[+3]_44 chrX:8674660-8674740 0.00089 30_[+3]_42 chrIII:7272988-7273068 0.001 28_[+3]_44 chrV:6994145-6994225 0.0011 15_[+3]_57 chrV:5832964-5833044 0.0011 60_[+3]_12 chrX:13812178-13812258 0.0011 25_[+3]_47 chrX:14787394-14787474 0.0011 52_[+3]_20 chrX:9608252-9608332 0.0012 27_[+3]_45 chrII:11713839-11713919 0.0012 9_[+3]_63 chrIV:1723402-1723482 0.0012 41_[+3]_31 chrV:11802568-11802648 0.0012 57_[+3]_15 chrII:6889814-6889894 0.0012 59_[+3]_13 chrII:6909811-6909891 0.0013 49_[+3]_23 chrIII:8654708-8654788 0.0013 5_[+3]_67 chrV:13202394-13202474 0.0014 72_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RARARAAA width=8 seqs=88 chrI:5079514-5079594 ( 5) GAGAAAAA 1 chrX:13356497-13356577 ( 34) GAGAAAAA 1 chrIV:2772519-2772599 ( 3) GAGAAAAA 1 chrII:8585387-8585467 ( 20) GAGAAAAA 1 chrV:9270588-9270668 ( 44) GAGAAAAA 1 chrX:16775573-16775653 ( 68) GAGAAAAA 1 chrX:12631700-12631780 ( 27) GAAAAAAA 1 chrIII:6420308-6420388 ( 3) GAGAGAAA 1 chrX:12186318-12186398 ( 65) GAAAAAAA 1 chrI:8010497-8010577 ( 5) GAGAGAAA 1 chrI:3956732-3956812 ( 31) GAAAAAAA 1 chrI:5314820-5314900 ( 47) GAAAAAAA 1 chrV:11922331-11922411 ( 63) GAAAAAAA 1 chrV:11615014-11615094 ( 65) GAAAAAAA 1 chrX:1124285-1124365 ( 31) GAAAAAAA 1 chrII:9493374-9493454 ( 46) GAAAAAAA 1 chrIV:17474264-17474344 ( 65) GAAAAAAA 1 chrI:10750076-10750156 ( 67) GAAAAAAA 1 chrII:5282982-5283062 ( 43) GAAAAAAA 1 chrII:8765298-8765378 ( 67) GAAAAAAA 1 chrI:5307339-5307419 ( 40) GAAAGAAA 1 chrX:12422764-12422844 ( 50) GAAAGAAA 1 chrI:9541251-9541331 ( 61) GAAAGAAA 1 chrII:5605583-5605663 ( 10) GAGAAAAG 1 chrV:8040870-8040950 ( 8) GAGAAAGA 1 chrIII:7271293-7271373 ( 49) GAGAAAGA 1 chrX:13744878-13744958 ( 39) GAGAAAAG 1 chrIII:12549743-12549823 ( 72) GAGAGAGA 1 chrIII:5078300-5078380 ( 48) AAGAAAAA 1 chrV:12554339-12554419 ( 4) AAGAAAAA 1 chrV:3686008-3686088 ( 43) GAAAAAAG 1 chrX:9403842-9403922 ( 32) GAAAAAAG 1 chrI:7573999-7574079 ( 32) GAGAGAGA 1 chrI:12055239-12055319 ( 20) GAGAGAGA 1 chrI:7740020-7740100 ( 28) GAAAAAAG 1 chrX:12425683-12425763 ( 33) GAGAGAAG 1 chrII:15205446-15205526 ( 1) AAGAAAAA 1 chrIV:5216490-5216570 ( 6) AAGAAAAA 1 chrII:13293030-13293110 ( 66) AAGAAAAA 1 chrIII:4100086-4100166 ( 7) GAGAAGAA 1 chrI:10105588-10105668 ( 66) GAGAAGAA 1 chrX:15274220-15274300 ( 12) AAAAAAAA 1 chrIV:15901074-15901154 ( 56) AAAAAAAA 1 chrII:4748454-4748534 ( 6) AAAAAAAA 1 chrI:5025504-5025584 ( 35) GAAAGAAG 1 chrI:3986650-3986730 ( 26) AAAAAAAA 1 chrI:11840811-11840891 ( 51) AAAAAAAA 1 chrX:17640942-17641022 ( 19) GAAAGAAG 1 chrIII:13056933-13057013 ( 39) AAAAAAAA 1 chrI:10104338-10104418 ( 17) AAAAAAAA 1 chrV:2076149-2076229 ( 71) AAGAGAAA 1 chrII:2804432-2804512 ( 59) AAAAAAAA 1 chrX:12761419-12761499 ( 63) AAGAGAAA 1 chrIV:9868103-9868183 ( 41) AAGAGAAA 1 chrI:12501415-12501495 ( 25) GAAAGAGA 1 chrII:8259903-8259983 ( 29) AAGAGAAA 1 chrV:11616033-11616113 ( 58) GAAAGAAG 1 chrV:11803646-11803726 ( 61) AAAAAAAA 1 chrX:15634026-15634106 ( 56) GAGAGGAA 1 chrV:10005527-10005607 ( 35) GAAAAGAA 1 chrI:4328147-4328227 ( 66) AAAAGAAA 1 chrII:10574556-10574636 ( 2) AAAAGAAA 1 chrII:10016272-10016352 ( 8) AAAAGAAA 1 chrX:6642950-6643030 ( 2) GAGAGAGG 1 chrI:42167-42247 ( 69) GAGAGAGG 1 chrV:4820923-4821003 ( 65) AAGAAAAG 1 chrX:15395855-15395935 ( 61) GAAAAAGG 1 chrI:5997495-5997575 ( 35) GAGAAGAG 1 chrIV:6751418-6751498 ( 2) GAGAAGGA 1 chrII:8741392-8741472 ( 26) AAGAGAAG 1 chrX:17068867-17068947 ( 53) AAAAAAAG 1 chrIII:8983881-8983961 ( 21) AAGAGAGA 1 chrV:6238524-6238604 ( 28) AAAAAAAG 1 chrI:7759171-7759251 ( 29) GAGAGGGA 1 chrX:8674660-8674740 ( 31) GAGAGGGA 1 chrIII:7272988-7273068 ( 29) GAAAGGGA 1 chrV:6994145-6994225 ( 16) AAAAGGAA 1 chrV:5832964-5833044 ( 61) AAAAGGAA 1 chrX:13812178-13812258 ( 26) GAGAAGGG 1 chrX:14787394-14787474 ( 53) AAAAAAGG 1 chrX:9608252-9608332 ( 28) AAGAAGAG 1 chrII:11713839-11713919 ( 10) GAAAAGGG 1 chrIV:1723402-1723482 ( 42) GAAAAGGG 1 chrV:11802568-11802648 ( 58) AAGAAGGA 1 chrII:6889814-6889894 ( 60) GAAAAGGG 1 chrII:6909811-6909891 ( 50) AAAAAGGA 1 chrIII:8654708-8654788 ( 6) AAAAGGGA 1 chrV:13202394-13202474 ( 73) AAGAAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.56875 E= 1.3e-005 37 -1310 160 -1310 174 -1310 -1310 -1310 84 -1310 120 -1310 174 -1310 -1310 -1310 112 -1310 80 -1310 137 -1310 16 -1310 131 -1310 36 -1310 128 -1310 43 -1310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 1.3e-005 0.386364 0.000000 0.613636 0.000000 1.000000 0.000000 0.000000 0.000000 0.534091 0.000000 0.465909 0.000000 1.000000 0.000000 0.000000 0.000000 0.647727 0.000000 0.352273 0.000000 0.772727 0.000000 0.227273 0.000000 0.738636 0.000000 0.261364 0.000000 0.727273 0.000000 0.272727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARARAAA MEME-3 regular expression -------------------------------------------------------------------------------- [GA]A[AG]A[AG][AG][AG][AG] -------------------------------------------------------------------------------- Time 17.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGMCGC MEME-4 width = 8 sites = 18 llr = 164 E-value = 3.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGMCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::2:6::3 pos.-specific C 218:39:6 probability G 89:a11a: matrix T :::::::1 bits 2.3 * * 2.1 * * ** 1.8 * * ** 1.6 **** ** Relative 1.4 **** ** Entropy 1.2 **** ** (13.2 bits) 0.9 **** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGACGC consensus C C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4941237-4941317 12 7.48e-06 CTTCGTCGCT GGCGCCGC GTCCCAGATT chrII:10016272-10016352 21 7.48e-06 AGAAACACGG GGCGCCGC GCACGCGTGT chrIV:11491524-11491604 46 7.48e-06 GCTCGGCGCT GGCGCCGC GGTCTCTCTT chrIII:3799431-3799511 72 1.39e-05 CGAGCGTGGC GGCGACGA C chrII:8742102-8742182 22 1.39e-05 CTACAGTTTT GGCGACGA AACCATTCAT chrIV:6751418-6751498 45 1.39e-05 AAGACGGGTC GGCGACGA GTCACTTTGC chrI:8606470-8606550 50 2.28e-05 CCCGAATCCA CGCGACGC TGTAACTTAT chrV:5768369-5768449 39 2.28e-05 CGTGTGTCGT CGCGACGC TTTTTTAAGG chrIII:11981641-11981721 60 2.59e-05 AAGTCAGAGC CGCGCCGC AGCAGCACAC chrI:7740020-7740100 60 4.16e-05 GACAATTGTC GGAGACGC AATGCAATTG chrIII:10817143-10817223 37 4.16e-05 CGGCTTCCCA GGCGGCGC CATCTCCCGA chrV:12553419-12553499 56 4.16e-05 CGCAGTTTCT GGCGACGT TCTGTTCAGT chrIII:63934-64014 9 4.16e-05 GCGGTCTC GGCGACGT TTGTGAAAAT chrV:13415593-13415673 53 5.03e-05 AGCTTTCGTA GGAGCCGC CCCAGTTGGA chrI:12501415-12501495 10 5.68e-05 CCAGCTGTC CGCGACGA ATTCGGGGAA chrX:16775573-16775653 26 7.02e-05 TGAAAACCAC GCCGACGC TGTTCGTTGA chrX:8018491-8018571 34 7.63e-05 CTTTTTTGCT GGCGCGGC ATCGGATTTT chrIII:13056933-13057013 21 8.99e-05 CCGTCGAAAA GGAGACGA ACGGTATACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4941237-4941317 7.5e-06 11_[+4]_61 chrII:10016272-10016352 7.5e-06 20_[+4]_52 chrIV:11491524-11491604 7.5e-06 45_[+4]_27 chrIII:3799431-3799511 1.4e-05 71_[+4]_1 chrII:8742102-8742182 1.4e-05 21_[+4]_51 chrIV:6751418-6751498 1.4e-05 44_[+4]_28 chrI:8606470-8606550 2.3e-05 49_[+4]_23 chrV:5768369-5768449 2.3e-05 38_[+4]_34 chrIII:11981641-11981721 2.6e-05 59_[+4]_13 chrI:7740020-7740100 4.2e-05 59_[+4]_13 chrIII:10817143-10817223 4.2e-05 36_[+4]_36 chrV:12553419-12553499 4.2e-05 55_[+4]_17 chrIII:63934-64014 4.2e-05 8_[+4]_64 chrV:13415593-13415673 5e-05 52_[+4]_20 chrI:12501415-12501495 5.7e-05 9_[+4]_63 chrX:16775573-16775653 7e-05 25_[+4]_47 chrX:8018491-8018571 7.6e-05 33_[+4]_39 chrIII:13056933-13057013 9e-05 20_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGMCGC width=8 seqs=18 chrI:4941237-4941317 ( 12) GGCGCCGC 1 chrII:10016272-10016352 ( 21) GGCGCCGC 1 chrIV:11491524-11491604 ( 46) GGCGCCGC 1 chrIII:3799431-3799511 ( 72) GGCGACGA 1 chrII:8742102-8742182 ( 22) GGCGACGA 1 chrIV:6751418-6751498 ( 45) GGCGACGA 1 chrI:8606470-8606550 ( 50) CGCGACGC 1 chrV:5768369-5768449 ( 39) CGCGACGC 1 chrIII:11981641-11981721 ( 60) CGCGCCGC 1 chrI:7740020-7740100 ( 60) GGAGACGC 1 chrIII:10817143-10817223 ( 37) GGCGGCGC 1 chrV:12553419-12553499 ( 56) GGCGACGT 1 chrIII:63934-64014 ( 9) GGCGACGT 1 chrV:13415593-13415673 ( 53) GGAGCCGC 1 chrI:12501415-12501495 ( 10) CGCGACGA 1 chrX:16775573-16775653 ( 26) GCCGACGC 1 chrX:8018491-8018571 ( 34) GGCGCGGC 1 chrIII:13056933-13057013 ( 21) GGAGACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 3.6e+002 -1081 11 194 -1081 -1081 -189 222 -1081 -84 201 -1081 -1081 -1081 -1081 230 -1081 103 69 -187 -1081 -1081 219 -187 -1081 -1081 -1081 230 -1081 -10 157 -1081 -139 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.6e+002 0.000000 0.222222 0.777778 0.000000 0.000000 0.055556 0.944444 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.611111 0.333333 0.055556 0.000000 0.000000 0.944444 0.055556 0.000000 0.000000 0.000000 1.000000 0.000000 0.277778 0.611111 0.000000 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGMCGC MEME-4 regular expression -------------------------------------------------------------------------------- [GC]GCG[AC]CG[CA] -------------------------------------------------------------------------------- Time 20.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGHGGGG MEME-5 width = 8 sites = 15 llr = 140 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGHGGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::3::21 pos.-specific C :::3::1: probability G aaa18a79 matrix T :::32::: bits 2.3 *** * 2.1 *** * 1.8 *** * 1.6 *** * * Relative 1.4 *** ** * Entropy 1.2 *** **** (13.5 bits) 0.9 *** **** 0.7 *** **** 0.5 *** **** 0.2 *** **** 0.0 -------- Multilevel GGGAGGGG consensus CT A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGHGGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9541251-9541331 40 2.93e-06 GGAAGCCACA GGGCGGGG CCTGGAGAGT chrX:15274220-15274300 28 7.16e-06 AATGGAAAGT GGGAGGGG AACGACAGAA chrX:17640942-17641022 33 7.16e-06 GAAGAAAGGG GGGAGGGG GACTTCACGT chrIII:11738668-11738748 17 7.16e-06 AGAGATTAAA GGGAGGGG ACCCAAATGT chrII:1502127-1502207 8 1.13e-05 TCGTGGA GGGTGGGG TGGCACGGCT chrX:13812178-13812258 39 1.42e-05 AAGGGTGGGG GGGGGGGG GTAGTACTAA chrV:8026547-8026627 45 1.85e-05 TCTTCGAAAT GGGCGGAG CGATGGGTGT chrV:19524787-19524867 49 1.85e-05 CCACGTGGCT GGGCGGAG TCATGTGAGC chrIII:13056933-13057013 58 4.11e-05 TTGTGACATT GGGTGGAG AAGAAGGTGT chrIII:7722619-7722699 54 4.11e-05 AAAAATTCAT GGGATGGG CGCCAGAAAT chrIV:6879095-6879175 45 4.71e-05 AGCAGAGCAT GGGTTGGG GCTCCCCCTG chrI:4941237-4941317 66 4.71e-05 GCTGACCATT GGGTTGGG CGCACTT chrI:10104338-10104418 48 5.14e-05 GGAGGTTAGA GGGCGGGA ACGAGAGAGA chrII:10446401-10446481 69 7.93e-05 CAACGTGATC GGGAGGCG AAAA chrI:2667979-2668059 72 8.77e-05 TTATGGAGAC GGGGGGGA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGHGGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9541251-9541331 2.9e-06 39_[+5]_33 chrX:15274220-15274300 7.2e-06 27_[+5]_45 chrX:17640942-17641022 7.2e-06 32_[+5]_40 chrIII:11738668-11738748 7.2e-06 16_[+5]_56 chrII:1502127-1502207 1.1e-05 7_[+5]_65 chrX:13812178-13812258 1.4e-05 38_[+5]_34 chrV:8026547-8026627 1.8e-05 44_[+5]_28 chrV:19524787-19524867 1.8e-05 48_[+5]_24 chrIII:13056933-13057013 4.1e-05 57_[+5]_15 chrIII:7722619-7722699 4.1e-05 53_[+5]_19 chrIV:6879095-6879175 4.7e-05 44_[+5]_28 chrI:4941237-4941317 4.7e-05 65_[+5]_7 chrI:10104338-10104418 5.1e-05 47_[+5]_25 chrII:10446401-10446481 7.9e-05 68_[+5]_4 chrI:2667979-2668059 8.8e-05 71_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGHGGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGHGGGG width=8 seqs=15 chrI:9541251-9541331 ( 40) GGGCGGGG 1 chrX:15274220-15274300 ( 28) GGGAGGGG 1 chrX:17640942-17641022 ( 33) GGGAGGGG 1 chrIII:11738668-11738748 ( 17) GGGAGGGG 1 chrII:1502127-1502207 ( 8) GGGTGGGG 1 chrX:13812178-13812258 ( 39) GGGGGGGG 1 chrV:8026547-8026627 ( 45) GGGCGGAG 1 chrV:19524787-19524867 ( 49) GGGCGGAG 1 chrIII:13056933-13057013 ( 58) GGGTGGAG 1 chrIII:7722619-7722699 ( 54) GGGATGGG 1 chrIV:6879095-6879175 ( 45) GGGTTGGG 1 chrI:4941237-4941317 ( 66) GGGTTGGG 1 chrI:10104338-10104418 ( 48) GGGCGGGA 1 chrII:10446401-10446481 ( 69) GGGAGGCG 1 chrI:2667979-2668059 ( 72) GGGGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGHGGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 1.1e+003 -1055 -1055 230 -1055 -1055 -1055 230 -1055 -1055 -1055 230 -1055 16 37 -61 -13 -1055 -1055 198 -55 -1055 -1055 230 -1055 -58 -163 185 -1055 -116 -1055 209 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGHGGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.266667 0.133333 0.266667 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.200000 0.066667 0.733333 0.000000 0.133333 0.000000 0.866667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGHGGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGG[ACT][GT]G[GA]G -------------------------------------------------------------------------------- Time 23.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10105588-10105668 2.24e-01 80 chrV:14725512-14725592 3.58e-01 80 chrV:6238524-6238604 2.04e-02 80 chrV:5410845-5410925 3.14e-02 17_[+1(6.64e-05)]_55 chrV:11803646-11803726 3.22e-03 50_[+2(8.21e-05)]_22 chrII:8765298-8765378 1.31e-02 66_[+3(9.09e-05)]_6 chrIV:15398776-15398856 1.39e-01 80 chrV:6326570-6326650 7.32e-01 80 chrX:15345853-15345933 2.57e-01 80 chrV:5697807-5697887 3.92e-01 80 chrII:13293030-13293110 5.06e-01 80 chrII:5282982-5283062 3.56e-02 42_[+3(9.09e-05)]_30 chrV:10953973-10954053 3.57e-01 80 chrIII:12843002-12843082 6.53e-01 80 chrIII:63934-64014 5.52e-02 8_[+4(4.16e-05)]_64 chrX:5820194-5820274 9.86e-02 80 chrV:13391657-13391737 6.54e-01 80 chrIV:12009428-12009508 1.25e-01 80 chrV:11616033-11616113 1.77e-01 80 chrX:16775573-16775653 7.12e-04 25_[+4(7.02e-05)]_34_[+3(2.89e-05)]_\ 5 chrX:13744878-13744958 1.87e-01 80 chrII:8259903-8259983 7.93e-02 80 chrI:8869246-8869326 2.71e-01 80 chrIV:11491524-11491604 6.15e-03 45_[+4(7.48e-06)]_27 chrV:381379-381459 1.77e-01 80 chrV:4730236-4730316 3.47e-01 80 chrV:19524787-19524867 4.19e-05 37_[+1(1.54e-05)]_3_[+5(1.85e-05)]_\ 24 chrIII:10241390-10241470 3.57e-01 65_[+2(8.21e-05)]_7 chrIV:13083331-13083411 8.98e-01 80 chrI:12501415-12501495 3.01e-02 9_[+4(5.68e-05)]_63 chrIV:9672599-9672679 9.97e-01 80 chrV:12553419-12553499 8.75e-02 55_[+4(4.16e-05)]_17 chrI:6103314-6103394 7.71e-02 62_[+1(1.54e-05)]_10 chrII:6909811-6909891 4.09e-01 80 chrX:16735203-16735283 5.53e-01 80 chrV:8026547-8026627 6.78e-04 44_[+5(1.85e-05)]_28 chrIV:6751418-6751498 2.27e-04 44_[+4(1.39e-05)]_28 chrV:10005527-10005607 3.30e-02 80 chrX:13812178-13812258 1.80e-02 30_[+5(1.13e-05)]_[+5(1.42e-05)]_34 chrIII:10290727-10290807 1.29e-01 72_[+1(3.46e-05)] chrIII:11738668-11738748 4.73e-05 16_[+5(7.16e-06)]_20_[+2(2.63e-05)]_\ 28 chrII:6889814-6889894 6.53e-01 80 chrV:11118475-11118555 4.80e-01 80 chrIV:5666416-5666496 2.25e-01 80 chrX:2840395-2840475 2.91e-01 80 chrII:3956906-3956986 5.66e-01 80 chrII:10016272-10016352 9.50e-04 20_[+4(7.48e-06)]_52 chrX:10688500-10688580 1.64e-01 26_[+2(2.63e-05)]_46 chrI:10748311-10748391 3.89e-02 80 chrX:9643254-9643334 4.00e-01 80 chrIV:6099965-6100045 3.25e-01 63_[+2(8.21e-05)]_9 chrII:8707090-8707170 3.74e-01 80 chrII:11838520-11838600 5.23e-01 80 chrI:10760358-10760438 2.66e-01 80 chrIV:9868103-9868183 2.66e-02 80 chrIV:5216490-5216570 4.04e-01 80 chrV:13202394-13202474 8.00e-01 80 chrII:12050845-12050925 2.43e-01 80 chrX:12761419-12761499 1.86e-03 80 chrIV:309635-309715 1.03e-01 80 chrIV:11092804-11092884 7.98e-01 80 chrIII:7271293-7271373 1.27e-01 80 chrIV:11718829-11718909 5.74e-01 80 chrX:9147160-9147240 4.10e-02 80 chrII:15205446-15205526 1.83e-03 37_[+1(9.37e-05)]_1_[+1(5.70e-05)]_\ 26 chrV:11802568-11802648 1.02e-02 41_[+1(5.70e-05)]_31 chrIII:9153164-9153244 4.38e-01 80 chrII:11836751-11836831 9.68e-01 80 chrX:12425683-12425763 1.38e-01 80 chrV:8040870-8040950 1.93e-01 80 chrX:15395855-15395935 2.93e-01 80 chrX:5653950-5654030 2.78e-01 80 chrIII:9083384-9083464 9.37e-02 49_[+1(9.02e-06)]_23 chrIII:10817143-10817223 6.59e-02 36_[+4(4.16e-05)]_36 chrIII:12839125-12839205 5.58e-03 80 chrIII:8782825-8782905 3.26e-01 80 chrX:16725099-16725179 8.20e-01 80 chrII:2804432-2804512 2.46e-02 80 chrIV:8529253-8529333 7.50e-02 80 chrIII:8987119-8987199 4.41e-01 80 chrIV:8042228-8042308 2.00e-01 80 chrV:5823097-5823177 1.39e-01 80 chrX:15380880-15380960 3.09e-02 80 chrI:7740020-7740100 2.63e-04 15_[+2(8.21e-05)]_36_[+4(4.16e-05)]_\ 13 chrX:16689983-16690063 1.04e-01 80 chrIV:4018978-4019058 6.20e-03 11_[+2(8.21e-05)]_61 chrIII:13763411-13763491 8.97e-01 80 chrII:7325389-7325469 7.79e-01 80 chrIII:6148623-6148703 1.33e-01 80 chrV:11094854-11094934 1.10e-02 80 chrI:8344553-8344633 9.01e-01 80 chrII:10574556-10574636 1.37e-01 80 chrIII:7722619-7722699 4.21e-02 53_[+5(4.11e-05)]_19 chrV:7089412-7089492 4.29e-01 80 chrI:2667979-2668059 2.53e-03 71_[+5(8.77e-05)]_1 chrI:10750076-10750156 3.58e-02 64_[+3(2.89e-05)]_8 chrI:7130952-7131032 6.59e-01 80 chrIII:8983881-8983961 4.44e-02 80 chrX:15706265-15706345 7.79e-02 80 chrIII:4100086-4100166 6.90e-03 80 chrIV:17474264-17474344 2.93e-04 5_[+2(8.21e-05)]_51_[+3(9.09e-05)]_\ 8 chrII:12042687-12042767 5.59e-01 80 chrX:13113557-13113637 9.55e-02 9_[+1(9.37e-05)]_63 chrII:7617979-7618059 4.84e-01 80 chrIII:7358855-7358935 3.47e-01 80 chrIV:3337478-3337558 2.80e-01 80 chrIV:1723402-1723482 4.23e-02 80 chrV:7415931-7416011 2.23e-01 39_[+1(3.46e-05)]_33 chrII:11713839-11713919 7.03e-02 80 chrIV:11899467-11899547 1.30e-01 80 chrX:2070825-2070905 2.82e-01 80 chrII:1502127-1502207 3.23e-03 7_[+5(1.13e-05)]_65 chrX:8674660-8674740 1.09e-02 10_[+1(5.70e-05)]_62 chrIV:8028445-8028525 1.36e-02 70_[+1(9.02e-06)]_2 chrV:16595130-16595210 9.12e-01 80 chrV:6045540-6045620 6.31e-01 80 chrII:9493374-9493454 9.45e-02 45_[+3(9.09e-05)]_27 chrI:3292125-3292205 1.86e-01 80 chrI:12055239-12055319 5.31e-01 80 chrIII:8654708-8654788 3.41e-02 80 chrV:2076149-2076229 3.67e-03 80 chrV:9516443-9516523 3.14e-01 80 chrX:12663783-12663863 2.55e-01 80 chrI:5826757-5826837 3.32e-02 48_[+1(9.02e-06)]_24 chrII:8742102-8742182 7.57e-04 21_[+4(1.39e-05)]_51 chrX:4143526-4143606 4.22e-01 80 chrI:10104338-10104418 5.88e-03 47_[+5(5.14e-05)]_25 chrI:5997495-5997575 5.89e-03 80 chrIII:13056933-13057013 4.40e-05 20_[+4(8.99e-05)]_29_[+5(4.11e-05)]_\ 15 chrI:7759171-7759251 1.78e-02 80 chrIII:8739274-8739354 1.10e-03 26_[+2(2.63e-05)]_28_[+1(9.37e-05)]_\ 10 chrX:17640942-17641022 2.55e-05 32_[+5(7.16e-06)]_3_[+1(3.46e-05)]_\ 4_[+1(1.54e-05)]_17 chrX:4132431-4132511 8.12e-01 80 chrI:14922874-14922954 8.55e-01 80 chrV:15708144-15708224 1.43e-01 80 chrI:13060510-13060590 4.44e-03 52_[+2(8.21e-05)]_20 chrX:10689841-10689921 5.61e-01 80 chrX:1124285-1124365 1.56e-01 30_[+3(9.09e-05)]_42 chrV:11859269-11859349 9.46e-01 80 chrX:10639619-10639699 2.96e-01 80 chrI:7573999-7574079 1.45e-02 80 chrI:4941237-4941317 7.53e-04 11_[+4(7.48e-06)]_46_[+5(4.71e-05)]_\ 7 chrX:8676249-8676329 4.23e-02 35_[+2(8.21e-05)]_5_[+2(8.21e-05)]_\ 24 chrV:11615014-11615094 3.68e-02 62_[+3(2.89e-05)]_10 chrIV:3654368-3654448 1.33e-02 21_[+1(7.54e-05)]_13_[+1(3.46e-05)]_\ 30 chrX:10168668-10168748 2.61e-01 43_[+2(8.21e-05)]_29 chrI:11840811-11840891 2.93e-01 80 chrV:4820923-4821003 4.78e-01 80 chrX:8475303-8475383 1.67e-01 80 chrV:16352332-16352412 3.88e-01 80 chrI:3986650-3986730 5.73e-01 80 chrII:5282353-5282433 2.85e-02 12_[+1(5.70e-05)]_60 chrX:8236202-8236282 6.40e-01 80 chrI:5025504-5025584 2.31e-02 80 chrII:8813714-8813794 8.47e-02 80 chrII:2987402-2987482 3.25e-01 80 chrI:42167-42247 4.30e-02 80 chrV:11922331-11922411 2.79e-01 62_[+3(9.09e-05)]_10 chrV:11777966-11778046 8.02e-01 80 chrV:9270588-9270668 2.34e-02 43_[+3(2.89e-05)]_29 chrII:6176631-6176711 3.68e-01 65_[+2(8.21e-05)]_7 chrX:6739195-6739275 1.13e-02 80 chrIII:6898676-6898756 4.83e-02 44_[+1(3.46e-05)]_28 chrI:5314820-5314900 6.97e-02 46_[+3(9.09e-05)]_26 chrI:3956732-3956812 2.90e-01 30_[+3(9.09e-05)]_42 chrX:9403842-9403922 1.41e-01 80 chrX:15634026-15634106 1.29e-04 80 chrV:3686008-3686088 2.13e-01 80 chrX:13147220-13147300 1.25e-03 54_[+1(2.17e-05)]_18 chrV:18705659-18705739 6.08e-01 80 chrII:10446401-10446481 2.29e-03 68_[+5(7.93e-05)]_4 chrI:9541251-9541331 2.96e-05 39_[+5(2.93e-06)]_33 chrIII:10717635-10717715 1.57e-01 80 chrII:4748454-4748534 3.44e-01 80 chrIV:8949826-8949906 6.58e-02 46_[+1(5.70e-05)]_26 chrV:5832964-5833044 1.25e-01 80 chrIV:664239-664319 6.47e-02 80 chrV:11888102-11888182 8.24e-02 40_[+1(9.37e-05)]_32 chrV:6994145-6994225 4.06e-01 80 chrX:9608252-9608332 4.56e-02 80 chrX:13325128-13325208 7.37e-01 80 chrV:6247524-6247604 8.06e-01 80 chrII:10389237-10389317 3.21e-03 65_[+2(8.21e-05)]_7 chrII:6849475-6849555 1.02e-01 9_[+1(9.37e-05)]_63 chrIII:12849391-12849471 1.23e-01 80 chrI:6219969-6220049 9.24e-01 80 chrII:5605583-5605663 4.50e-02 80 chrV:13402502-13402582 5.10e-01 80 chrI:12552863-12552943 5.82e-01 80 chrX:17063985-17064065 2.88e-01 80 chrX:6642950-6643030 4.00e-04 80 chrII:10390589-10390669 1.12e-02 31_[+2(8.21e-05)]_33_[+1(5.70e-05)] chrV:12554339-12554419 7.93e-02 80 chrX:1395957-1396037 6.94e-01 80 chrV:5768369-5768449 6.28e-03 38_[+4(2.28e-05)]_34 chrX:12422764-12422844 1.92e-01 80 chrIII:8780694-8780774 1.33e-01 80 chrIII:5078300-5078380 5.10e-01 80 chrV:13608692-13608772 8.50e-01 80 chrI:9870944-9871024 9.76e-01 80 chrI:5307339-5307419 6.65e-02 80 chrI:8010497-8010577 3.15e-02 4_[+3(9.09e-05)]_68 chrX:12186318-12186398 2.63e-03 52_[+2(8.21e-05)]_4_[+3(9.09e-05)]_\ 8 chrX:14787394-14787474 8.31e-01 80 chrX:7986992-7987072 1.83e-01 80 chrX:13920548-13920628 4.11e-03 80 chrX:6735645-6735725 4.38e-01 80 chrII:8585387-8585467 1.52e-02 19_[+3(2.89e-05)]_53 chrV:11541631-11541711 9.27e-01 80 chrII:4089377-4089457 3.00e-02 80 chrIV:8535109-8535189 1.61e-01 36_[+1(3.46e-05)]_36 chrV:13415593-13415673 6.17e-02 4_[+4(5.03e-05)]_40_[+4(5.03e-05)]_\ 20 chrX:13539857-13539937 2.02e-01 65_[+2(2.63e-05)]_7 chrIV:15901074-15901154 4.96e-01 80 chrIII:6420308-6420388 1.84e-01 2_[+3(9.09e-05)]_70 chrX:14502278-14502358 9.47e-01 80 chrIII:11981641-11981721 3.03e-05 29_[+1(2.17e-05)]_22_[+4(2.59e-05)]_\ 13 chrV:13907842-13907922 9.99e-01 80 chrIV:5764542-5764622 1.21e-01 80 chrIII:9275906-9275986 1.90e-01 80 chrV:16780695-16780775 3.92e-01 80 chrIV:2772519-2772599 8.45e-03 2_[+3(2.89e-05)]_70 chrV:20011314-20011394 4.42e-01 80 chrIII:6362510-6362590 1.13e-01 80 chrV:9769510-9769590 2.07e-01 80 chrIII:12549743-12549823 3.79e-03 80 chrI:8606470-8606550 4.88e-02 49_[+4(2.28e-05)]_23 chrV:10887609-10887689 8.14e-01 80 chrIII:5920166-5920246 1.72e-01 53_[+1(3.46e-05)]_19 chrI:5131082-5131162 6.11e-02 80 chrIV:4401031-4401111 3.52e-01 80 chrX:9248177-9248257 1.94e-01 80 chrX:13356497-13356577 7.16e-03 18_[+2(8.21e-05)]_7_[+3(2.89e-05)]_\ 39 chrV:13081341-13081421 4.69e-01 80 chrX:15274220-15274300 2.23e-04 27_[+5(7.16e-06)]_45 chrX:12631700-12631780 5.66e-02 26_[+3(9.09e-05)]_46 chrX:17068867-17068947 3.63e-01 80 chrV:10043412-10043492 1.03e-01 80 chrX:8018491-8018571 1.18e-02 33_[+4(7.63e-05)]_39 chrI:4328147-4328227 3.12e-01 80 chrX:5846328-5846408 3.32e-01 80 chrIV:6879095-6879175 3.93e-04 25_[+1(3.46e-05)]_11_[+5(4.71e-05)]_\ 28 chrI:2664254-2664334 1.47e-01 80 chrII:8741392-8741472 4.21e-01 80 chrV:11500072-11500152 4.83e-01 80 chrIII:7272988-7273068 1.41e-02 80 chrX:13377901-13377981 2.34e-01 80 chrV:10036439-10036519 8.29e-01 80 chrI:5079514-5079594 6.30e-02 4_[+3(2.89e-05)]_68 chrIII:3799431-3799511 1.15e-04 71_[+4(1.39e-05)]_1 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************