******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/snu-23.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:11636478-11636558 1.0000 80 chrX:6205042-6205122 1.0000 80 chrV:6505581-6505661 1.0000 80 chrX:16786168-16786248 1.0000 80 chrI:6574652-6574732 1.0000 80 chrIV:9534499-9534579 1.0000 80 chrIV:10972003-10972083 1.0000 80 chrX:2316335-2316415 1.0000 80 chrIV:763771-763851 1.0000 80 chrX:10238269-10238349 1.0000 80 chrX:6020237-6020317 1.0000 80 chrV:10891112-10891192 1.0000 80 chrX:8238701-8238781 1.0000 80 chrIV:14675887-14675967 1.0000 80 chrI:6340113-6340193 1.0000 80 chrIV:15398817-15398897 1.0000 80 chrIV:8302081-8302161 1.0000 80 chrX:1527570-1527650 1.0000 80 chrV:13790695-13790775 1.0000 80 chrX:7659869-7659949 1.0000 80 chrX:12990916-12990996 1.0000 80 chrI:5826731-5826811 1.0000 80 chrX:9638967-9639047 1.0000 80 chrII:9573611-9573691 1.0000 80 chrIII:4412252-4412332 1.0000 80 chrIV:4402535-4402615 1.0000 80 chrII:11737530-11737610 1.0000 80 chrIII:4317196-4317276 1.0000 80 chrI:8019136-8019216 1.0000 80 chrX:3023932-3024012 1.0000 80 chrI:2586292-2586372 1.0000 80 chrII:5572246-5572326 1.0000 80 chrIII:10007133-10007213 1.0000 80 chrIV:8146370-8146450 1.0000 80 chrX:12668268-12668348 1.0000 80 chrII:3929640-3929720 1.0000 80 chrIV:1623912-1623992 1.0000 80 chrX:9549125-9549205 1.0000 80 chrI:7005485-7005565 1.0000 80 chrX:6741110-6741190 1.0000 80 chrV:9165449-9165529 1.0000 80 chrI:5400398-5400478 1.0000 80 chrV:11531169-11531249 1.0000 80 chrIII:2804629-2804709 1.0000 80 chrIII:7488449-7488529 1.0000 80 chrV:9633451-9633531 1.0000 80 chrII:3209411-3209491 1.0000 80 chrI:1877828-1877908 1.0000 80 chrII:7090294-7090374 1.0000 80 chrIV:9672645-9672725 1.0000 80 chrII:15212614-15212694 1.0000 80 chrIII:9752996-9753076 1.0000 80 chrX:4809898-4809978 1.0000 80 chrIV:13911089-13911169 1.0000 80 chrIV:4031176-4031256 1.0000 80 chrV:11616099-11616179 1.0000 80 chrIV:15901257-15901337 1.0000 80 chrI:6885314-6885394 1.0000 80 chrII:6892019-6892099 1.0000 80 chrX:7585775-7585855 1.0000 80 chrII:8741428-8741508 1.0000 80 chrIII:10816141-10816221 1.0000 80 chrI:11497963-11498043 1.0000 80 chrIV:8869789-8869869 1.0000 80 chrI:11940105-11940185 1.0000 80 chrIV:11008417-11008497 1.0000 80 chrI:12164791-12164871 1.0000 80 chrIV:8036622-8036702 1.0000 80 chrX:13539898-13539978 1.0000 80 chrII:10446459-10446539 1.0000 80 chrIV:4472915-4472995 1.0000 80 chrV:20693049-20693129 1.0000 80 chrII:2649172-2649252 1.0000 80 chrII:15205458-15205538 1.0000 80 chrIII:9620378-9620458 1.0000 80 chrI:5550571-5550651 1.0000 80 chrX:2582328-2582408 1.0000 80 chrIII:5501778-5501858 1.0000 80 chrII:5874310-5874390 1.0000 80 chrII:7874130-7874210 1.0000 80 chrIII:5841879-5841959 1.0000 80 chrII:5698423-5698503 1.0000 80 chrX:11536596-11536676 1.0000 80 chrIV:11489730-11489810 1.0000 80 chrX:15327381-15327461 1.0000 80 chrIII:6360308-6360388 1.0000 80 chrIV:9335968-9336048 1.0000 80 chrX:9667613-9667693 1.0000 80 chrIII:5951752-5951832 1.0000 80 chrIII:9500443-9500523 1.0000 80 chrI:13061205-13061285 1.0000 80 chrI:13060476-13060556 1.0000 80 chrIV:17441407-17441487 1.0000 80 chrIII:96323-96403 1.0000 80 chrX:13351017-13351097 1.0000 80 chrIII:7911796-7911876 1.0000 80 chrII:9601836-9601916 1.0000 80 chrIV:8975106-8975186 1.0000 80 chrIV:14445381-14445461 1.0000 80 chrI:6259227-6259307 1.0000 80 chrIV:9757243-9757323 1.0000 80 chrII:8813820-8813900 1.0000 80 chrIII:13012109-13012189 1.0000 80 chrV:7759426-7759506 1.0000 80 chrIII:7217245-7217325 1.0000 80 chrX:13754637-13754717 1.0000 80 chrX:15073029-15073109 1.0000 80 chrX:2802923-2803003 1.0000 80 chrX:8026881-8026961 1.0000 80 chrX:17427927-17428007 1.0000 80 chrV:5204329-5204409 1.0000 80 chrX:8048796-8048876 1.0000 80 chrI:5610662-5610742 1.0000 80 chrII:12996385-12996465 1.0000 80 chrX:5659754-5659834 1.0000 80 chrIII:6798081-6798161 1.0000 80 chrIV:9670122-9670202 1.0000 80 chrV:13788113-13788193 1.0000 80 chrIV:1804760-1804840 1.0000 80 chrII:626091-626171 1.0000 80 chrIV:2785215-2785295 1.0000 80 chrV:2615426-2615506 1.0000 80 chrX:13113616-13113696 1.0000 80 chrX:6825984-6826064 1.0000 80 chrIV:1389155-1389235 1.0000 80 chrX:12899269-12899349 1.0000 80 chrIV:7047115-7047195 1.0000 80 chrIII:5877028-5877108 1.0000 80 chrI:9448166-9448246 1.0000 80 chrX:2317617-2317697 1.0000 80 chrV:11060729-11060809 1.0000 80 chrII:8131798-8131878 1.0000 80 chrIV:10976071-10976151 1.0000 80 chrI:3754606-3754686 1.0000 80 chrX:2075257-2075337 1.0000 80 chrIV:9090697-9090777 1.0000 80 chrX:16902043-16902123 1.0000 80 chrIV:10180297-10180377 1.0000 80 chrV:5272732-5272812 1.0000 80 chrII:8128418-8128498 1.0000 80 chrX:6642960-6643040 1.0000 80 chrX:13141532-13141612 1.0000 80 chrV:6323146-6323226 1.0000 80 chrX:4808973-4809053 1.0000 80 chrI:7883889-7883969 1.0000 80 chrIV:5565307-5565387 1.0000 80 chrI:7479380-7479460 1.0000 80 chrII:9260204-9260284 1.0000 80 chrX:13147280-13147360 1.0000 80 chrIV:8028449-8028529 1.0000 80 chrV:12071610-12071690 1.0000 80 chrV:13073307-13073387 1.0000 80 chrV:4570400-4570480 1.0000 80 chrV:777452-777532 1.0000 80 chrX:3788641-3788721 1.0000 80 chrV:8935278-8935358 1.0000 80 chrII:8143461-8143541 1.0000 80 chrIV:5765816-5765896 1.0000 80 chrI:8962056-8962136 1.0000 80 chrX:5942317-5942397 1.0000 80 chrV:19190188-19190268 1.0000 80 chrIV:1056632-1056712 1.0000 80 chrX:6279734-6279814 1.0000 80 chrV:9741018-9741098 1.0000 80 chrX:8236147-8236227 1.0000 80 chrIII:6988261-6988341 1.0000 80 chrII:10525292-10525372 1.0000 80 chrV:11121415-11121495 1.0000 80 chrIV:8922091-8922171 1.0000 80 chrIII:2401311-2401391 1.0000 80 chrII:9262247-9262327 1.0000 80 chrII:5201113-5201193 1.0000 80 chrII:5605600-5605680 1.0000 80 chrIII:6170223-6170303 1.0000 80 chrIII:3908356-3908436 1.0000 80 chrIV:10909860-10909940 1.0000 80 chrX:1339059-1339139 1.0000 80 chrIII:8780631-8780711 1.0000 80 chrIII:12015825-12015905 1.0000 80 chrX:1122363-1122443 1.0000 80 chrII:13477378-13477458 1.0000 80 chrV:10867723-10867803 1.0000 80 chrI:5025547-5025627 1.0000 80 chrI:663639-663719 1.0000 80 chrIII:491257-491337 1.0000 80 chrX:785507-785587 1.0000 80 chrI:14642655-14642735 1.0000 80 chrIV:2890721-2890801 1.0000 80 chrI:1695197-1695277 1.0000 80 chrIV:5805620-5805700 1.0000 80 chrIV:12029948-12030028 1.0000 80 chrX:16704223-16704303 1.0000 80 chrIII:7978855-7978935 1.0000 80 chrIV:1108198-1108278 1.0000 80 chrV:14322954-14323034 1.0000 80 chrI:9114044-9114124 1.0000 80 chrIV:6156983-6157063 1.0000 80 chrI:13395228-13395308 1.0000 80 chrIII:13064935-13065015 1.0000 80 chrX:14786925-14787005 1.0000 80 chrV:2236038-2236118 1.0000 80 chrV:1285879-1285959 1.0000 80 chrIV:5561586-5561666 1.0000 80 chrIII:6362504-6362584 1.0000 80 chrIII:6402476-6402556 1.0000 80 chrI:10406155-10406235 1.0000 80 chrI:6166798-6166878 1.0000 80 chrII:9493489-9493569 1.0000 80 chrIII:6405281-6405361 1.0000 80 chrX:13008264-13008344 1.0000 80 chrI:11784535-11784615 1.0000 80 chrX:9643213-9643293 1.0000 80 chrV:9094385-9094465 1.0000 80 chrV:11822616-11822696 1.0000 80 chrV:13497622-13497702 1.0000 80 chrX:10677675-10677755 1.0000 80 chrIV:240466-240546 1.0000 80 chrV:19644086-19644166 1.0000 80 chrX:8018501-8018581 1.0000 80 chrIV:9868127-9868207 1.0000 80 chrIV:9321402-9321482 1.0000 80 chrX:4507262-4507342 1.0000 80 chrIV:10714711-10714791 1.0000 80 chrIV:1901173-1901253 1.0000 80 chrV:7894124-7894204 1.0000 80 chrII:7343134-7343214 1.0000 80 chrV:10031562-10031642 1.0000 80 chrII:12622324-12622404 1.0000 80 chrV:7413281-7413361 1.0000 80 chrX:4818398-4818478 1.0000 80 chrII:11830794-11830874 1.0000 80 chrII:10557405-10557485 1.0000 80 chrX:10566926-10567006 1.0000 80 chrI:3759147-3759227 1.0000 80 chrV:14847467-14847547 1.0000 80 chrIV:16169935-16170015 1.0000 80 chrIII:12009934-12010014 1.0000 80 chrV:17981895-17981975 1.0000 80 chrIV:3368813-3368893 1.0000 80 chrIII:3273256-3273336 1.0000 80 chrX:3837913-3837993 1.0000 80 chrX:11215639-11215719 1.0000 80 chrIII:4687251-4687331 1.0000 80 chrX:16157021-16157101 1.0000 80 chrI:10691969-10692049 1.0000 80 chrIV:11026785-11026865 1.0000 80 chrV:8407157-8407237 1.0000 80 chrI:7147748-7147828 1.0000 80 chrII:9561036-9561116 1.0000 80 chrIII:11262323-11262403 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_snu-23/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/snu-23.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.223 G 0.216 T 0.288 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.223 G 0.216 T 0.288 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAGAVR MEME-1 width = 8 sites = 69 llr = 547 E-value = 8.2e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a:a:a34 pos.-specific C 2:::::41 probability G 6:a:a:34 matrix T :::::::1 bits 2.2 * * 2.0 * * 1.8 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.4 bits) 0.9 ***** 0.7 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GAGAGACA consensus C AG sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:7147748-7147828 29 2.24e-05 GGCTCGAATT GAGAGACG CAGATGAATC chrV:1285879-1285959 37 2.24e-05 GTGGAGGAAT GAGAGACG CAGACGGTTT chrI:13395228-13395308 33 2.24e-05 GAGGTAGTGT GAGAGACG CAGACATCTA chrIII:6170223-6170303 44 2.24e-05 ggagaagaag gagagaca atgatgaaga chrI:7883889-7883969 9 2.24e-05 GGACACAT GAGAGACA ATATGTCTGT chrIV:10976071-10976151 34 2.24e-05 TGAACCGATA GAGAGACG CAGGGATAGA chrII:626091-626171 26 2.24e-05 GTGGGGACGG GAGAGACG CAGACAATAA chrIV:1804760-1804840 27 2.24e-05 AAGGGAAGAC GAGAGACG CAGGCGGTAC chrII:12996385-12996465 39 2.24e-05 GAGGAGAGAG GAGAGACG CAGACGGGCA chrIII:96323-96403 17 2.24e-05 gaaatgcagt gagagacg cagagaTTTG chrII:7090294-7090374 55 2.24e-05 GTGCGAGAAA GAGAGACG CAGGCTGACT chrV:8407157-8407237 24 7.14e-05 atggtaaaaa gagagaag gacaagGCGT chrIII:3273256-3273336 23 7.14e-05 gagagagaga gagagaga aaagaacagg chrV:11121415-11121495 31 7.14e-05 AGTGAGAAAG GAGAGAGA ATGAGAGATT chrX:13147280-13147360 31 7.14e-05 CAATGGCGGC GAGAGAGG GGCACATTCG chrII:9260204-9260284 64 7.14e-05 AGAGACATCA GAGAGAAA GGGAATGTG chrIV:5565307-5565387 48 7.14e-05 TGCGCCGTAA GAGAGAGG ACCGACCCTC chrX:13141532-13141612 18 7.14e-05 GAAGAAGAGC GAGAGAAA CAGAAGATGC chrX:2317617-2317697 72 7.14e-05 GTGGCagaga gagagaga g chrIV:9670122-9670202 16 7.14e-05 CGATTCAAAC GAGAGAGG ATTCAAAAAT chrX:17427927-17428007 19 7.14e-05 AGGACGGTGT GAGAGAAA GACAGTGGAT chrII:2649172-2649252 12 7.14e-05 CTAGACGCAG GAGAGAAA GAACGTAGAA chrII:10446459-10446539 72 7.14e-05 AAACCGATCG GAGAGAAA T chrI:12164791-12164871 30 7.14e-05 AAGAAACACA GAGAGAAA ATTGGAGAAA chrI:1877828-1877908 7 7.14e-05 AATAGA GAGAGAGA GTGACGGAGA chrII:3929640-3929720 22 7.14e-05 GAGAATTAGA GAGAGAGA AAAAGGGAGT chrIII:10007133-10007213 72 7.14e-05 ATCAACAAGT GAGAGAAA A chrI:5826731-5826811 14 7.14e-05 TTTGGTTTTC GAGAGAAA AATGATGATG chrX:1527570-1527650 57 7.14e-05 GGAGGGGTGC GAGAGAAA TTGCGCCGCG chrX:16157021-16157101 2 9.45e-05 A CAGAGACA AACCGACAAA chrII:5605600-5605680 53 9.45e-05 ACTTATACGT CAGAGACG ACGAACTTGT chrX:3788641-3788721 29 9.45e-05 CAGCAATCAC CAGAGACG CACTCGGGGA chrII:5874310-5874390 35 9.45e-05 CATGTAGACG CAGAGACA ATCGTTGTTT chrIV:8036622-8036702 25 9.45e-05 GCATCAAATA CAGAGACA GTTCTCTTTT chrX:6642960-6643040 72 1.05e-04 GTATTTTTTT GAGAGACC T chrII:11737530-11737610 12 1.05e-04 CATTGTCATA GAGAGACC GGTTTTTCAC chrIV:5765816-5765896 23 1.33e-04 TAACGAGAAC AAGAGACG CAGACACAAT chrV:777452-777532 16 1.33e-04 AGATCGCATG AAGAGACG CAGACATAAA chrIV:9335968-9336048 28 1.33e-04 GGAGTTTAGA AAGAGACG CAGGCATTGA chrII:3209411-3209491 11 1.33e-04 TTGTTTACTG AAGAGACG CAGACACTTT chrV:9633451-9633531 4 1.33e-04 CAA AAGAGACG TAGAGAAATG chrI:7005485-7005565 7 1.33e-04 CTTCGG AAGAGACG AAGGCGGTGA chrII:11830794-11830874 45 1.84e-04 GAGCGCGTGT CAGAGAGA TAGGAGGTGC chrII:9493489-9493569 30 1.84e-04 CGAGTTGGGA CAGAGAAA ACGACAAAAA chrII:10525292-10525372 21 1.84e-04 ATAGTATTTT CAGAGAGA CCGGTCGGAT chrI:13061205-13061285 50 1.84e-04 ACGGAAAAGA CAGAGAAG ATATGACGTG chrI:11940105-11940185 12 1.84e-04 TGAGAGTGTG CAGAGAAA AAGAGAGGAA chrI:6885314-6885394 68 1.84e-04 AAGAGAAACA CAGAGAGA CCCGA chrIV:9672645-9672725 71 1.84e-04 CCCTGTATGA CAGAGAAA AA chrI:2586292-2586372 34 1.84e-04 TGGGAGAGCA CAGAGAAG CGAGCGACGG chrIV:14675887-14675967 58 1.84e-04 TACCGTGACG CAGAGAAA TAGACATTAT chrIV:8302081-8302161 14 1.97e-04 TATTGTCATC GAGAGACT ATTGAAGTTG chrX:9667613-9667693 15 2.19e-04 CCTTATTTGC GAGAGAGC GTTTATAAGG chrIII:2804629-2804709 3 2.19e-04 GC GAGAGAGC ATTAAAAACG chrV:10031562-10031642 42 2.81e-04 GCAGCCTGAA AAGAGAGG GAGTTCAAAA chrIV:9868127-9868207 17 2.81e-04 ATCAAAAAGG AAGAGAAA ACTCTAGAGA chrII:6892019-6892099 72 2.81e-04 TGATTTTAAA AAGAGAAA A chrX:10238269-10238349 9 2.81e-04 GTGAAGAA AAGAGAAA AGGAGAAGTA chrI:6166798-6166878 73 3.10e-04 GGGAAAATTA GAGAGAGT chrV:2615426-2615506 40 3.10e-04 GCAACTATAT GAGAGAGT CAGGGAATGG chrIV:14445381-14445461 12 3.10e-04 CTGACCAGGT GAGAGAGT ATTGGAATCA chrIII:5841879-5841959 51 3.10e-04 GCGGAAACTG GAGAGAGT GAGAGGAAGA chrX:7659869-7659949 26 3.47e-04 AGAGACTGGA AAGAGACC ACTTGGTCAC chrX:2316335-2316415 46 3.47e-04 CTCGGCGTGT CAGAGACT ATTGTCCACG chrIV:8922091-8922171 8 4.16e-04 AGGGTGT GAGAGATG TGAGAGGTAA chrIII:9752996-9753076 25 4.16e-04 CGCAGACAGT GAGAGATA TACGAACGAT chrIV:9321402-9321482 37 4.74e-04 GCCGCGAGAC AAGAGAAC AAGAATCGAT chrV:14322954-14323034 18 4.74e-04 TAAATAGTGT AAGAGAAC GGAGACGCAG chrIV:15398817-15398897 47 5.10e-04 TGCTGGACTG AAGAGAAT CAGAAAATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7147748-7147828 2.2e-05 28_[+1]_44 chrV:1285879-1285959 2.2e-05 36_[+1]_36 chrI:13395228-13395308 2.2e-05 32_[+1]_40 chrIII:6170223-6170303 2.2e-05 43_[+1]_29 chrI:7883889-7883969 2.2e-05 8_[+1]_64 chrIV:10976071-10976151 2.2e-05 33_[+1]_39 chrII:626091-626171 2.2e-05 25_[+1]_47 chrIV:1804760-1804840 2.2e-05 26_[+1]_46 chrII:12996385-12996465 2.2e-05 38_[+1]_34 chrIII:96323-96403 2.2e-05 16_[+1]_56 chrII:7090294-7090374 2.2e-05 54_[+1]_18 chrV:8407157-8407237 7.1e-05 23_[+1]_49 chrIII:3273256-3273336 7.1e-05 22_[+1]_50 chrV:11121415-11121495 7.1e-05 30_[+1]_42 chrX:13147280-13147360 7.1e-05 30_[+1]_42 chrII:9260204-9260284 7.1e-05 63_[+1]_9 chrIV:5565307-5565387 7.1e-05 47_[+1]_25 chrX:13141532-13141612 7.1e-05 17_[+1]_55 chrX:2317617-2317697 7.1e-05 71_[+1]_1 chrIV:9670122-9670202 7.1e-05 15_[+1]_57 chrX:17427927-17428007 7.1e-05 18_[+1]_54 chrII:2649172-2649252 7.1e-05 11_[+1]_61 chrII:10446459-10446539 7.1e-05 71_[+1]_1 chrI:12164791-12164871 7.1e-05 29_[+1]_43 chrI:1877828-1877908 7.1e-05 6_[+1]_66 chrII:3929640-3929720 7.1e-05 21_[+1]_51 chrIII:10007133-10007213 7.1e-05 71_[+1]_1 chrI:5826731-5826811 7.1e-05 13_[+1]_59 chrX:1527570-1527650 7.1e-05 56_[+1]_16 chrX:16157021-16157101 9.4e-05 1_[+1]_71 chrII:5605600-5605680 9.4e-05 52_[+1]_20 chrX:3788641-3788721 9.4e-05 28_[+1]_44 chrII:5874310-5874390 9.4e-05 34_[+1]_38 chrIV:8036622-8036702 9.4e-05 24_[+1]_48 chrX:6642960-6643040 0.0001 71_[+1]_1 chrII:11737530-11737610 0.0001 11_[+1]_61 chrIV:5765816-5765896 0.00013 22_[+1]_50 chrV:777452-777532 0.00013 15_[+1]_57 chrIV:9335968-9336048 0.00013 27_[+1]_45 chrII:3209411-3209491 0.00013 10_[+1]_62 chrV:9633451-9633531 0.00013 3_[+1]_69 chrI:7005485-7005565 0.00013 6_[+1]_66 chrII:11830794-11830874 0.00018 44_[+1]_28 chrII:9493489-9493569 0.00018 29_[+1]_43 chrII:10525292-10525372 0.00018 20_[+1]_52 chrI:13061205-13061285 0.00018 49_[+1]_23 chrI:11940105-11940185 0.00018 11_[+1]_61 chrI:6885314-6885394 0.00018 67_[+1]_5 chrIV:9672645-9672725 0.00018 70_[+1]_2 chrI:2586292-2586372 0.00018 33_[+1]_39 chrIV:14675887-14675967 0.00018 57_[+1]_15 chrIV:8302081-8302161 0.0002 13_[+1]_59 chrX:9667613-9667693 0.00022 14_[+1]_58 chrIII:2804629-2804709 0.00022 2_[+1]_70 chrV:10031562-10031642 0.00028 41_[+1]_31 chrIV:9868127-9868207 0.00028 16_[+1]_56 chrII:6892019-6892099 0.00028 71_[+1]_1 chrX:10238269-10238349 0.00028 8_[+1]_64 chrI:6166798-6166878 0.00031 72_[+1] chrV:2615426-2615506 0.00031 39_[+1]_33 chrIV:14445381-14445461 0.00031 11_[+1]_61 chrIII:5841879-5841959 0.00031 50_[+1]_22 chrX:7659869-7659949 0.00035 25_[+1]_47 chrX:2316335-2316415 0.00035 45_[+1]_27 chrIV:8922091-8922171 0.00042 7_[+1]_65 chrIII:9752996-9753076 0.00042 24_[+1]_48 chrIV:9321402-9321482 0.00047 36_[+1]_36 chrV:14322954-14323034 0.00047 17_[+1]_55 chrIV:15398817-15398897 0.00051 46_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGAVR width=8 seqs=69 chrI:7147748-7147828 ( 29) GAGAGACG 1 chrV:1285879-1285959 ( 37) GAGAGACG 1 chrI:13395228-13395308 ( 33) GAGAGACG 1 chrIII:6170223-6170303 ( 44) GAGAGACA 1 chrI:7883889-7883969 ( 9) GAGAGACA 1 chrIV:10976071-10976151 ( 34) GAGAGACG 1 chrII:626091-626171 ( 26) GAGAGACG 1 chrIV:1804760-1804840 ( 27) GAGAGACG 1 chrII:12996385-12996465 ( 39) GAGAGACG 1 chrIII:96323-96403 ( 17) GAGAGACG 1 chrII:7090294-7090374 ( 55) GAGAGACG 1 chrV:8407157-8407237 ( 24) GAGAGAAG 1 chrIII:3273256-3273336 ( 23) GAGAGAGA 1 chrV:11121415-11121495 ( 31) GAGAGAGA 1 chrX:13147280-13147360 ( 31) GAGAGAGG 1 chrII:9260204-9260284 ( 64) GAGAGAAA 1 chrIV:5565307-5565387 ( 48) GAGAGAGG 1 chrX:13141532-13141612 ( 18) GAGAGAAA 1 chrX:2317617-2317697 ( 72) GAGAGAGA 1 chrIV:9670122-9670202 ( 16) GAGAGAGG 1 chrX:17427927-17428007 ( 19) GAGAGAAA 1 chrII:2649172-2649252 ( 12) GAGAGAAA 1 chrII:10446459-10446539 ( 72) GAGAGAAA 1 chrI:12164791-12164871 ( 30) GAGAGAAA 1 chrI:1877828-1877908 ( 7) GAGAGAGA 1 chrII:3929640-3929720 ( 22) GAGAGAGA 1 chrIII:10007133-10007213 ( 72) GAGAGAAA 1 chrI:5826731-5826811 ( 14) GAGAGAAA 1 chrX:1527570-1527650 ( 57) GAGAGAAA 1 chrX:16157021-16157101 ( 2) CAGAGACA 1 chrII:5605600-5605680 ( 53) CAGAGACG 1 chrX:3788641-3788721 ( 29) CAGAGACG 1 chrII:5874310-5874390 ( 35) CAGAGACA 1 chrIV:8036622-8036702 ( 25) CAGAGACA 1 chrX:6642960-6643040 ( 72) GAGAGACC 1 chrII:11737530-11737610 ( 12) GAGAGACC 1 chrIV:5765816-5765896 ( 23) AAGAGACG 1 chrV:777452-777532 ( 16) AAGAGACG 1 chrIV:9335968-9336048 ( 28) AAGAGACG 1 chrII:3209411-3209491 ( 11) AAGAGACG 1 chrV:9633451-9633531 ( 4) AAGAGACG 1 chrI:7005485-7005565 ( 7) AAGAGACG 1 chrII:11830794-11830874 ( 45) CAGAGAGA 1 chrII:9493489-9493569 ( 30) CAGAGAAA 1 chrII:10525292-10525372 ( 21) CAGAGAGA 1 chrI:13061205-13061285 ( 50) CAGAGAAG 1 chrI:11940105-11940185 ( 12) CAGAGAAA 1 chrI:6885314-6885394 ( 68) CAGAGAGA 1 chrIV:9672645-9672725 ( 71) CAGAGAAA 1 chrI:2586292-2586372 ( 34) CAGAGAAG 1 chrIV:14675887-14675967 ( 58) CAGAGAAA 1 chrIV:8302081-8302161 ( 14) GAGAGACT 1 chrX:9667613-9667693 ( 15) GAGAGAGC 1 chrIII:2804629-2804709 ( 3) GAGAGAGC 1 chrV:10031562-10031642 ( 42) AAGAGAGG 1 chrIV:9868127-9868207 ( 17) AAGAGAAA 1 chrII:6892019-6892099 ( 72) AAGAGAAA 1 chrX:10238269-10238349 ( 9) AAGAGAAA 1 chrI:6166798-6166878 ( 73) GAGAGAGT 1 chrV:2615426-2615506 ( 40) GAGAGAGT 1 chrIV:14445381-14445461 ( 12) GAGAGAGT 1 chrIII:5841879-5841959 ( 51) GAGAGAGT 1 chrX:7659869-7659949 ( 26) AAGAGACC 1 chrX:2316335-2316415 ( 46) CAGAGACT 1 chrIV:8922091-8922171 ( 8) GAGAGATG 1 chrIII:9752996-9753076 ( 25) GAGAGATA 1 chrIV:9321402-9321482 ( 37) AAGAGAAC 1 chrV:14322954-14323034 ( 18) AAGAGAAC 1 chrIV:15398817-15398897 ( 47) AAGAGAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 8.2e-028 -43 -4 142 -1275 187 -1275 -1275 -1275 -1275 -1275 221 -1275 187 -1275 -1275 -1275 -1275 -1275 221 -1275 187 -1275 -1275 -1275 23 81 27 -331 67 -114 74 -150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 8.2e-028 0.202899 0.217391 0.579710 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.318841 0.391304 0.260870 0.028986 0.434783 0.101449 0.362319 0.101449 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAVR MEME-1 regular expression -------------------------------------------------------------------------------- [GCA]AGAGA[CAG][AG] -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTCTCTC MEME-2 width = 8 sites = 84 llr = 622 E-value = 3.9e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::::1:: pos.-specific C :5:9:8:9 probability G 21:::::1 matrix T 74a1a1a: bits 2.2 2.0 1.8 *** * 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** ** (10.7 bits) 0.9 ****** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16169935-16170015 57 1.70e-05 Actctctctc tctctctc tctctctcGC chrIV:1901173-1901253 18 1.70e-05 cacttctctc tctctctc tACTGGATCT chrX:4507262-4507342 37 1.70e-05 TCTACTTTTT TCTCTCTC ATTTCACTAT chrV:13497622-13497702 32 1.70e-05 TTTCGTCTCT TCTCTCTC GTCTGGCAAC chrI:10406155-10406235 47 1.70e-05 CACCTCTCTC TCTCTCTC ATATACCGAT chrIV:5561586-5561666 72 1.70e-05 TTtctctctc tctctctc t chrI:1695197-1695277 13 1.70e-05 tctttctttc tctctctc tctctttatc chrII:5201113-5201193 23 1.70e-05 tctctctctc tctctctc AACATTTCCC chrIV:11489730-11489810 24 1.70e-05 tctgtctctc tctctctc tctACAAAAA chrII:15205458-15205538 60 1.70e-05 tatttctctc tctctctc tctctGGGAA chrIV:8036622-8036702 43 1.70e-05 GTTCTCTTTT TCTCTCTC TTTTCTCGAT chrIII:10816141-10816221 72 1.70e-05 TTTTTCCCTA TCTCTCTC A chrIV:1623912-1623992 58 1.70e-05 CTGCGTCTCT TCTCTCTC ACACACATTC chrIII:3273256-3273336 72 3.90e-05 TTCCAtctct tttctctc t chrV:14847467-14847547 37 3.90e-05 GCATTTTTGC TTTCTCTC GGGGTTTTCG chrII:8143461-8143541 68 3.90e-05 GCCTAAAATT TTTCTCTC GATTT chrIII:7217245-7217325 10 3.90e-05 GTGGGTACC TTTCTCTC GCATCTCTCA chrIV:9757243-9757323 61 3.90e-05 GTCTAACAGT TTTCTCTC TGATTGTTGT chrIII:9500443-9500523 15 3.90e-05 GCTCTCTAAC TTTCTCTC GCACCGCTGA chrII:3209411-3209491 50 3.90e-05 TTCTATGTTC TTTCTCTC CTGCGTCTAG chrX:6741110-6741190 51 3.90e-05 ATCAATGTAT TTTCTCTC GTACTCATCG chrIII:4412252-4412332 38 3.90e-05 tcgttctcta tttctctc gctttctatt chrII:9573611-9573691 72 3.90e-05 tctcactgtc tttctctc t chrIV:10972003-10972083 10 3.90e-05 CAGACCTTT TTTCTCTC TATTTTTCAT chrIV:10714711-10714791 56 5.17e-05 TGCATCTCCT GCTCTCTC CTTACATTAT chrIII:3908356-3908436 45 5.17e-05 TTATCTCTGC GCTCTCTC ATTTTTGTGC chrIV:1389155-1389235 16 5.17e-05 GAGCGCGCGC GCTCTCTC TAAAAACAGG chrII:7090294-7090374 5 5.17e-05 ACAC GCTCTCTC GCTAAAGGCG chrX:16786168-16786248 21 5.17e-05 GTCGCGTATC GCTCTCTC ATTTCCTCAT chrX:16157021-16157101 54 6.82e-05 CGCGGCCAtg tgtctctc tgtgcgtgtg chrV:2236038-2236118 12 6.82e-05 CTATTTCCAT TGTCTCTC TACTCTCCCA chrIV:5565307-5565387 18 6.82e-05 TATCATTGAA TGTCTCTC TGTGTGTCTA chrIV:11008417-11008497 65 6.82e-05 TGTATTGTTG TGTCTCTC TATACCTT chrIII:4317196-4317276 55 6.82e-05 TGATCCTAGT TGTCTCTC GCTACATTTC chrX:8236147-8236227 20 8.44e-05 AAAAATAAAT ACTCTCTC CCTCGCACGC chrI:8962056-8962136 8 8.44e-05 TTCACAT ACTCTCTC GCTCCCGGGT chrIV:2785215-2785295 32 8.44e-05 tgcgtctctc actctctc actcttcatc chrIII:9620378-9620458 4 8.44e-05 Atc actctctc cctctctcac chrI:5400398-5400478 34 8.44e-05 TTCTTTCAAT ACTCTCTC ATTTTAAATT chrI:8019136-8019216 35 8.44e-05 TCTAGTCTGT ACTCTCTC ATTATTCTCA chrII:11737530-11737610 62 8.44e-05 AGGATTACCC ACTCTCTC GTCGGTTCTT chrX:12899269-12899349 19 1.01e-04 ATGTTTTCCT TCTCTCTG AGGCCTATGA chrI:7883889-7883969 27 1.17e-04 ATATGTCTGT GTTCTCTC CGAATTTCAA chrIV:11636478-11636558 24 1.17e-04 TCTGCTAACG GTTCTCTC GTGGCACGTG chrIII:8780631-8780711 10 1.38e-04 ctctctcta tctctatc ATTGTTTTCG chrV:7759426-7759506 4 1.38e-04 CAC TCTCTATC TCTATTTTTC chrI:9114044-9114124 24 1.59e-04 TAACATTTTC ATTCTCTC ATCTCCTACT chrX:11215639-11215719 2 1.80e-04 T TTTCTCTG CCTGCGTACG chrV:14322954-14323034 55 1.80e-04 GTCAAGGCTT TTTCTCTG TTTCTCTTCG chrX:16704223-16704303 59 2.24e-04 GTTCGCACAC TCTTTCTC ATCCAGCGTC chrII:10525292-10525372 61 2.24e-04 ATGTATTGTG TCTTTCTC GCACTGTCTA chrX:13113616-13113696 27 2.24e-04 CAAATTGTTA TCTTTCTC TAAAATGACC chrI:6340113-6340193 21 2.24e-04 GCAAtctgtt tctttctc tttactctta chrII:9561036-9561116 47 2.63e-04 TCTTCGTTTT TTTCTATC TAAAACAACA chrIV:3368813-3368893 68 2.63e-04 ACATTCGACT GGTCTCTC GCTCG chrX:1339059-1339139 15 2.63e-04 AATTTGTGGG TTTCTATC GCGCAAGGAG chrX:6642960-6643040 44 2.63e-04 TACCAACTTT TTTCTATC GTTTCAACCT chrII:9601836-9601916 55 2.63e-04 AGATCTTTGG GGTCTCTC ATGAGTGATC chrIII:6360308-6360388 71 2.79e-04 TTTTGTTAGG AGTCTCTC AC chrI:10691969-10692049 38 2.91e-04 ATTCTCTGCG GCTCTCTG ATTCACAAGC chrIV:6156983-6157063 16 3.52e-04 TCCGCAGATG TGTCTCTG CGTCTCCTCC chrI:5025547-5025627 45 3.52e-04 GACCGTCACT TCTCTGTC Cttttttctt chrV:10867723-10867803 44 3.52e-04 TCATCGTTTC TTTCTTTC CGTTGAATTC chrIV:10909860-10909940 11 3.52e-04 TATTTTTGCA TTTCTTTC TGCGTATCTC chrV:11060729-11060809 4 3.52e-04 TAG TTTCTTTC GGTTGGCCGC chrX:16902043-16902123 65 4.09e-04 CACCTGAAGA CCTCTCTC CGTCTTCC chrI:3754606-3754686 14 4.09e-04 ACTTTCTCTT TTTTTCTC AACACGAGCC chrIII:13064935-13065015 35 4.65e-04 CGTATTTTTC ACTCTATC GTTCTCCTCT chrIII:12015825-12015905 64 4.65e-04 TCGAGAACCT ACTCTATC GTCATTTCC chrV:9094385-9094465 25 4.81e-04 CTGACTGGGT GTTCTCTG AAGGGAGCAG chrX:13141532-13141612 70 5.39e-04 TGCGTGTGTA TCTCTATG ACC chrII:10446459-10446539 52 5.39e-04 TCATGTGAGC TTTCTGTC AGAAACCGAT chrX:13539898-13539978 1 5.39e-04 . TCTCTATG TCCATTCAAT chrIV:4402535-4402615 18 5.39e-04 CATATATATT TTTCTGTC TGTCACTACG chrIV:11026785-11026865 29 7.44e-04 ATTCTAGAAT ATTCTATC AACAATTTGG chrV:6323146-6323226 44 7.44e-04 TCATCCATCT TCTCTTTG CCATTTCAGA chrIV:10180297-10180377 11 7.44e-04 CGTGACCCCA TCTCTTTG TGTCAGTTGT chrX:13754637-13754717 54 7.78e-04 TTGTGCGAAA TCTCTCCC CCCCTTTTCC chrIV:4031176-4031256 56 8.50e-04 ATCGATGTCG GGTCTCTG GCGAAGATAG chrII:5572246-5572326 15 8.87e-04 TCTTTTCCTT GTTTTCTC ATCATTTCCT chrI:663639-663719 34 9.84e-04 tctcgtctcg cgtctctc gtctctAACG chrX:8238701-8238781 54 9.84e-04 AAACAGTTTA ATTCTTTC CACCTCATGT chrV:20693049-20693129 10 1.15e-03 TTCTTCCAT TTTTTCTG AGAATCTTAT chrIII:7978855-7978935 31 1.21e-03 ATCTCTTCAT TCTTTTTC ACTGAACTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16169935-16170015 1.7e-05 56_[+2]_16 chrIV:1901173-1901253 1.7e-05 17_[+2]_55 chrX:4507262-4507342 1.7e-05 36_[+2]_36 chrV:13497622-13497702 1.7e-05 31_[+2]_41 chrI:10406155-10406235 1.7e-05 46_[+2]_26 chrIV:5561586-5561666 1.7e-05 71_[+2]_1 chrI:1695197-1695277 1.7e-05 12_[+2]_60 chrII:5201113-5201193 1.7e-05 22_[+2]_50 chrIV:11489730-11489810 1.7e-05 23_[+2]_49 chrII:15205458-15205538 1.7e-05 59_[+2]_13 chrIV:8036622-8036702 1.7e-05 42_[+2]_30 chrIII:10816141-10816221 1.7e-05 71_[+2]_1 chrIV:1623912-1623992 1.7e-05 57_[+2]_15 chrIII:3273256-3273336 3.9e-05 71_[+2]_1 chrV:14847467-14847547 3.9e-05 36_[+2]_36 chrII:8143461-8143541 3.9e-05 67_[+2]_5 chrIII:7217245-7217325 3.9e-05 9_[+2]_63 chrIV:9757243-9757323 3.9e-05 60_[+2]_12 chrIII:9500443-9500523 3.9e-05 14_[+2]_58 chrII:3209411-3209491 3.9e-05 49_[+2]_23 chrX:6741110-6741190 3.9e-05 50_[+2]_22 chrIII:4412252-4412332 3.9e-05 37_[+2]_35 chrII:9573611-9573691 3.9e-05 71_[+2]_1 chrIV:10972003-10972083 3.9e-05 9_[+2]_63 chrIV:10714711-10714791 5.2e-05 55_[+2]_17 chrIII:3908356-3908436 5.2e-05 44_[+2]_28 chrIV:1389155-1389235 5.2e-05 15_[+2]_57 chrII:7090294-7090374 5.2e-05 4_[+2]_68 chrX:16786168-16786248 5.2e-05 20_[+2]_52 chrX:16157021-16157101 6.8e-05 53_[+2]_19 chrV:2236038-2236118 6.8e-05 11_[+2]_61 chrIV:5565307-5565387 6.8e-05 17_[+2]_55 chrIV:11008417-11008497 6.8e-05 64_[+2]_8 chrIII:4317196-4317276 6.8e-05 54_[+2]_18 chrX:8236147-8236227 8.4e-05 19_[+2]_53 chrI:8962056-8962136 8.4e-05 7_[+2]_65 chrIV:2785215-2785295 8.4e-05 31_[+2]_41 chrIII:9620378-9620458 8.4e-05 3_[+2]_69 chrI:5400398-5400478 8.4e-05 33_[+2]_39 chrI:8019136-8019216 8.4e-05 34_[+2]_38 chrII:11737530-11737610 8.4e-05 61_[+2]_11 chrX:12899269-12899349 0.0001 18_[+2]_54 chrI:7883889-7883969 0.00012 26_[+2]_46 chrIV:11636478-11636558 0.00012 23_[+2]_49 chrIII:8780631-8780711 0.00014 9_[+2]_63 chrV:7759426-7759506 0.00014 3_[+2]_69 chrI:9114044-9114124 0.00016 23_[+2]_49 chrX:11215639-11215719 0.00018 1_[+2]_71 chrV:14322954-14323034 0.00018 54_[+2]_18 chrX:16704223-16704303 0.00022 58_[+2]_14 chrII:10525292-10525372 0.00022 60_[+2]_12 chrX:13113616-13113696 0.00022 26_[+2]_46 chrI:6340113-6340193 0.00022 20_[+2]_52 chrII:9561036-9561116 0.00026 46_[+2]_26 chrIV:3368813-3368893 0.00026 67_[+2]_5 chrX:1339059-1339139 0.00026 14_[+2]_58 chrX:6642960-6643040 0.00026 43_[+2]_29 chrII:9601836-9601916 0.00026 54_[+2]_18 chrIII:6360308-6360388 0.00028 70_[+2]_2 chrI:10691969-10692049 0.00029 37_[+2]_35 chrIV:6156983-6157063 0.00035 15_[+2]_57 chrI:5025547-5025627 0.00035 44_[+2]_28 chrV:10867723-10867803 0.00035 43_[+2]_29 chrIV:10909860-10909940 0.00035 10_[+2]_62 chrV:11060729-11060809 0.00035 3_[+2]_69 chrX:16902043-16902123 0.00041 64_[+2]_8 chrI:3754606-3754686 0.00041 13_[+2]_59 chrIII:13064935-13065015 0.00046 34_[+2]_38 chrIII:12015825-12015905 0.00046 63_[+2]_9 chrV:9094385-9094465 0.00048 24_[+2]_48 chrX:13141532-13141612 0.00054 69_[+2]_3 chrII:10446459-10446539 0.00054 51_[+2]_21 chrX:13539898-13539978 0.00054 [+2]_72 chrIV:4402535-4402615 0.00054 17_[+2]_55 chrIV:11026785-11026865 0.00074 28_[+2]_44 chrV:6323146-6323226 0.00074 43_[+2]_29 chrIV:10180297-10180377 0.00074 10_[+2]_62 chrX:13754637-13754717 0.00078 53_[+2]_19 chrIV:4031176-4031256 0.00085 55_[+2]_17 chrII:5572246-5572326 0.00089 14_[+2]_58 chrI:663639-663719 0.00098 33_[+2]_39 chrX:8238701-8238781 0.00098 53_[+2]_19 chrV:20693049-20693129 0.0011 9_[+2]_63 chrIII:7978855-7978935 0.0012 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTCTCTC width=8 seqs=84 chrIV:16169935-16170015 ( 57) TCTCTCTC 1 chrIV:1901173-1901253 ( 18) TCTCTCTC 1 chrX:4507262-4507342 ( 37) TCTCTCTC 1 chrV:13497622-13497702 ( 32) TCTCTCTC 1 chrI:10406155-10406235 ( 47) TCTCTCTC 1 chrIV:5561586-5561666 ( 72) TCTCTCTC 1 chrI:1695197-1695277 ( 13) TCTCTCTC 1 chrII:5201113-5201193 ( 23) TCTCTCTC 1 chrIV:11489730-11489810 ( 24) TCTCTCTC 1 chrII:15205458-15205538 ( 60) TCTCTCTC 1 chrIV:8036622-8036702 ( 43) TCTCTCTC 1 chrIII:10816141-10816221 ( 72) TCTCTCTC 1 chrIV:1623912-1623992 ( 58) TCTCTCTC 1 chrIII:3273256-3273336 ( 72) TTTCTCTC 1 chrV:14847467-14847547 ( 37) TTTCTCTC 1 chrII:8143461-8143541 ( 68) TTTCTCTC 1 chrIII:7217245-7217325 ( 10) TTTCTCTC 1 chrIV:9757243-9757323 ( 61) TTTCTCTC 1 chrIII:9500443-9500523 ( 15) TTTCTCTC 1 chrII:3209411-3209491 ( 50) TTTCTCTC 1 chrX:6741110-6741190 ( 51) TTTCTCTC 1 chrIII:4412252-4412332 ( 38) TTTCTCTC 1 chrII:9573611-9573691 ( 72) TTTCTCTC 1 chrIV:10972003-10972083 ( 10) TTTCTCTC 1 chrIV:10714711-10714791 ( 56) GCTCTCTC 1 chrIII:3908356-3908436 ( 45) GCTCTCTC 1 chrIV:1389155-1389235 ( 16) GCTCTCTC 1 chrII:7090294-7090374 ( 5) GCTCTCTC 1 chrX:16786168-16786248 ( 21) GCTCTCTC 1 chrX:16157021-16157101 ( 54) TGTCTCTC 1 chrV:2236038-2236118 ( 12) TGTCTCTC 1 chrIV:5565307-5565387 ( 18) TGTCTCTC 1 chrIV:11008417-11008497 ( 65) TGTCTCTC 1 chrIII:4317196-4317276 ( 55) TGTCTCTC 1 chrX:8236147-8236227 ( 20) ACTCTCTC 1 chrI:8962056-8962136 ( 8) ACTCTCTC 1 chrIV:2785215-2785295 ( 32) ACTCTCTC 1 chrIII:9620378-9620458 ( 4) ACTCTCTC 1 chrI:5400398-5400478 ( 34) ACTCTCTC 1 chrI:8019136-8019216 ( 35) ACTCTCTC 1 chrII:11737530-11737610 ( 62) ACTCTCTC 1 chrX:12899269-12899349 ( 19) TCTCTCTG 1 chrI:7883889-7883969 ( 27) GTTCTCTC 1 chrIV:11636478-11636558 ( 24) GTTCTCTC 1 chrIII:8780631-8780711 ( 10) TCTCTATC 1 chrV:7759426-7759506 ( 4) TCTCTATC 1 chrI:9114044-9114124 ( 24) ATTCTCTC 1 chrX:11215639-11215719 ( 2) TTTCTCTG 1 chrV:14322954-14323034 ( 55) TTTCTCTG 1 chrX:16704223-16704303 ( 59) TCTTTCTC 1 chrII:10525292-10525372 ( 61) TCTTTCTC 1 chrX:13113616-13113696 ( 27) TCTTTCTC 1 chrI:6340113-6340193 ( 21) TCTTTCTC 1 chrII:9561036-9561116 ( 47) TTTCTATC 1 chrIV:3368813-3368893 ( 68) GGTCTCTC 1 chrX:1339059-1339139 ( 15) TTTCTATC 1 chrX:6642960-6643040 ( 44) TTTCTATC 1 chrII:9601836-9601916 ( 55) GGTCTCTC 1 chrIII:6360308-6360388 ( 71) AGTCTCTC 1 chrI:10691969-10692049 ( 38) GCTCTCTG 1 chrIV:6156983-6157063 ( 16) TGTCTCTG 1 chrI:5025547-5025627 ( 45) TCTCTGTC 1 chrV:10867723-10867803 ( 44) TTTCTTTC 1 chrIV:10909860-10909940 ( 11) TTTCTTTC 1 chrV:11060729-11060809 ( 4) TTTCTTTC 1 chrX:16902043-16902123 ( 65) CCTCTCTC 1 chrI:3754606-3754686 ( 14) TTTTTCTC 1 chrIII:13064935-13065015 ( 35) ACTCTATC 1 chrIII:12015825-12015905 ( 64) ACTCTATC 1 chrV:9094385-9094465 ( 25) GTTCTCTG 1 chrX:13141532-13141612 ( 70) TCTCTATG 1 chrII:10446459-10446539 ( 52) TTTCTGTC 1 chrX:13539898-13539978 ( 1) TCTCTATG 1 chrIV:4402535-4402615 ( 18) TTTCTGTC 1 chrIV:11026785-11026865 ( 29) ATTCTATC 1 chrV:6323146-6323226 ( 44) TCTCTTTG 1 chrIV:10180297-10180377 ( 11) TCTCTTTG 1 chrX:13754637-13754717 ( 54) TCTCTCCC 1 chrIV:4031176-4031256 ( 56) GGTCTCTG 1 chrII:5572246-5572326 ( 15) GTTTTCTC 1 chrI:663639-663719 ( 34) CGTCTCTC 1 chrX:8238701-8238781 ( 54) ATTCTTTC 1 chrV:20693049-20693129 ( 10) TTTTTCTG 1 chrIII:7978855-7978935 ( 31) TCTTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.26574 E= 3.9e-025 -82 -323 -48 121 -1304 120 -72 31 -1304 -1304 -1304 180 -1304 202 -1304 -159 -1304 -1304 -1304 180 -120 177 -260 -179 -1304 -423 -1304 178 -1304 194 -60 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 3.9e-025 0.154762 0.023810 0.154762 0.666667 0.000000 0.511905 0.130952 0.357143 0.000000 0.000000 0.000000 1.000000 0.000000 0.904762 0.000000 0.095238 0.000000 0.000000 0.000000 1.000000 0.119048 0.761905 0.035714 0.083333 0.000000 0.011905 0.000000 0.988095 0.000000 0.857143 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-2 regular expression -------------------------------------------------------------------------------- T[CT]TCTCTC -------------------------------------------------------------------------------- Time 10.75 secs. ******************************************************************************** ******************************************************************************** MOTIF TCAYGTGA MEME-3 width = 8 sites = 69 llr = 511 E-value = 2.9e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCAYGTGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::9:2::7 pos.-specific C 3a:61::: probability G 1:::7:a2 matrix T 7:13:a:: bits 2.2 * * 2.0 * * 1.8 * * 1.5 * ** Relative 1.3 ** ** Entropy 1.1 ** *** (10.7 bits) 0.9 ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCACGTGA consensus C T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAYGTGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:9090697-9090777 38 1.43e-05 ATAGAGAAGG TCACGTGA ATATGACCAG chrX:2075257-2075337 58 1.43e-05 TTGACACGAG TCACGTGA GAATCACTAG chrIV:13911089-13911169 27 1.43e-05 GCCCAAATTT TCACGTGA GTGATACTTT chrIII:2804629-2804709 43 1.43e-05 AGTATACGAG TCACGTGA ACCCCTATCC chrX:9638967-9639047 64 1.43e-05 GATTACAGTA TCACGTGA GATCCAACC chrIV:9534499-9534579 51 1.43e-05 GACGACGGGG TCACGTGA TGGAAGAAAT chrII:10557405-10557485 56 2.54e-05 TCGTTTCTAA CCACGTGA CATATATTCT chrII:8741428-8741508 50 2.54e-05 GCGACCCCGA CCACGTGA CGCCAGTCTA chrII:12622324-12622404 54 5.53e-05 AAGGATCCGG TCACGTGG TGGATGTCAA chrIII:5877028-5877108 50 5.53e-05 AGAAGGATAG TCACGTGG ATTTGAATCA chrX:2802923-2803003 51 5.53e-05 TTCCGACAGC TCATGTGA TCTTTTTGGC chrII:5698423-5698503 32 5.53e-05 TTGTGGAGTA TCATGTGA ATGAATGAGT chrII:10446459-10446539 42 5.53e-05 CGAAGAAAAA TCATGTGA GCTTTCTGTC chrX:4809898-4809978 22 5.53e-05 CACTGGTATG TCATGTGA TTTCTAAGGT chrIV:9672645-9672725 42 5.53e-05 AAGCGTTACA TCACGTGG TCTTTCGATG chrIV:4402535-4402615 73 5.53e-05 AGCAGCGAAA TCATGTGA chrX:8238701-8238781 66 5.53e-05 TCTTTCCACC TCATGTGA CATGACT chrX:2316335-2316415 17 5.53e-05 GAGGAGACTC TCATGTGA CCTTTGCAAA chrV:6505581-6505661 25 5.53e-05 TTCACATGTG TCACGTGG ATAGTTTCTG chrII:7343134-7343214 15 7.84e-05 CAAATCCGCC CCATGTGA CAACTTCACG chrI:11784535-11784615 38 7.84e-05 AACCCCCCTG CCATGTGA TCTTCACAGC chrX:14786925-14787005 31 7.84e-05 ATGTACCTGG CCATGTGA GATTTGTGTT chrIII:12015825-12015905 6 7.84e-05 GTAGA CCATGTGA TTGTCCGGTG chrV:12071610-12071690 13 7.84e-05 GGGCATGATA CCACGTGG CCCAACAGCG chrIII:5501778-5501858 29 7.84e-05 CACGAGAGTG CCATGTGA CTAACCATGT chrIV:240466-240546 54 9.31e-05 ACTCCGGCTC TCATGTGG ATTTACGGGC chrX:8048796-8048876 55 9.31e-05 AGAATCAAGA TCATGTGG ACAAATAAAT chrIII:12009934-12010014 2 1.22e-04 T TCACATGA TTTCTAATCT chrIV:1804760-1804840 3 1.22e-04 GA GCACGTGA GAGAGTAAGG chrV:13788113-13788193 41 1.22e-04 AAATCCCTGG TCACATGA CATAGGACAA chrX:13539898-13539978 52 1.22e-04 TCTTTAAGAG GCACGTGA CTCATGTTGA chrII:15212614-15212694 24 1.22e-04 CTACTCATCA TCACATGA TGATCGTCGT chrIV:11636478-11636558 35 1.22e-04 TTCTCTCGTG GCACGTGA ATGAGCGGCA chrX:6741110-6741190 34 1.37e-04 GACAACAATT TCTCGTGA TCAATGTATT chrIV:8975106-8975186 20 1.52e-04 GGATATAGGG TCACCTGA TTGTAAGCTC chrI:1877828-1877908 58 1.52e-04 TTGAATCATT TCACCTGA CGTCATTGTA chrI:8019136-8019216 72 1.52e-04 AAATTTTCCG TCACCTGA C chrV:11822616-11822696 52 1.77e-04 AGAGGTCACA CCACATGA GAGTGAGTGT chrIV:16169935-16170015 26 2.72e-04 GCGGCACTGA CCACCTGA CACTTGGACC chrV:7413281-7413361 20 2.72e-04 CTGTTCAGTT TCACGTGC GGGGTTTGAG chrIV:8028449-8028529 68 2.72e-04 GCGCATCTTG TCACGTGC CTCTT chrX:16902043-16902123 54 2.72e-04 AGAGTGGTCA CCACCTGA AGACCTCTCT chrX:2317617-2317697 28 2.72e-04 AACCGTATTC TCATATGA TTTTTGTTTA chrX:8026881-8026961 52 2.72e-04 CTTGACCTGG TCACATGG CAAGTGTGTA chrX:15073029-15073109 7 2.72e-04 GACATG TCATATGA ATCGATGGCG chrIV:17441407-17441487 11 2.72e-04 ATACACTTTA GCACGTGG TTTCGACGTC chrX:11536596-11536676 35 2.72e-04 ATCAAATTGC GCATGTGA CAGCAATTTT chrIII:5841879-5841959 14 2.72e-04 CGATTTTTTT CCACCTGA CCGAGAAGTA chrII:5874310-5874390 12 2.72e-04 TTTTCCTAAG TCACATGG TTTTACATGT chrIV:11008417-11008497 24 2.72e-04 TTCTCTGAAT TCATATGA CCAAAGCAAA chrIII:13064935-13065015 1 3.04e-04 . TCTTGTGA TCTTTGGAAA chrX:785507-785587 17 3.04e-04 CACAGTGTCA TCTTGTGA AAGGGAGACA chrX:1339059-1339139 71 3.04e-04 ACATTTTCAA TCTCGTGG AA chrX:6205042-6205122 24 3.04e-04 GAACAATCGC TCTCGTGG TTCAAATCAA chrII:8128418-8128498 27 3.62e-04 CTAAAAAGTG TCACGAGA CGTACCTAGA chrIV:14445381-14445461 27 3.62e-04 AGTATTGGAA TCAGGTGA GACGCAGACA chrIII:9500443-9500523 69 3.62e-04 CTGAGGGGCG TCAGGTGA TATA chrV:11121415-11121495 7 4.16e-04 ATGACA CCACGTGC TTGTGAAGTG chrII:15205458-15205538 36 4.16e-04 AGCACGTGCA TCACGTGT CAtctctatt chrIII:7488449-7488529 23 4.16e-04 CAAGCTATTT CCACATGG GAGCGCGTGG chrIV:8146370-8146450 32 4.16e-04 CGTATCTCAA TCACGTGT ACTATCTCAT chrX:17427927-17428007 62 4.40e-04 ATGCGGTGTA CCTTGTGA CTTTTAGAGG chrII:8813820-8813900 63 4.40e-04 TCTCTTGAAA CCTTGTGA TATGTCGCTG chrI:11940105-11940185 42 4.40e-04 TATCTCAATG CCTCGTGG GGTGGTGCCG chrIII:11262323-11262403 5 5.09e-04 TTGA TCATATGG AATACGAAAA chrII:8131798-8131878 65 6.05e-04 CAGTTCAGGG TCATCTGG TAGTAATA chrII:7874130-7874210 14 6.05e-04 TTCCAATTTT CCACGAGA AGTACACAGC chrX:2582328-2582408 29 6.05e-04 TACAATTTCC GCTCGTGA TAGATGAGAA chrIV:15901257-15901337 26 6.82e-04 CACATAGAAA TCACGAGG TACACTACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAYGTGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:9090697-9090777 1.4e-05 37_[+3]_35 chrX:2075257-2075337 1.4e-05 57_[+3]_15 chrIV:13911089-13911169 1.4e-05 26_[+3]_46 chrIII:2804629-2804709 1.4e-05 42_[+3]_30 chrX:9638967-9639047 1.4e-05 63_[+3]_9 chrIV:9534499-9534579 1.4e-05 50_[+3]_22 chrII:10557405-10557485 2.5e-05 55_[+3]_17 chrII:8741428-8741508 2.5e-05 49_[+3]_23 chrII:12622324-12622404 5.5e-05 53_[+3]_19 chrIII:5877028-5877108 5.5e-05 49_[+3]_23 chrX:2802923-2803003 5.5e-05 50_[+3]_22 chrII:5698423-5698503 5.5e-05 31_[+3]_41 chrII:10446459-10446539 5.5e-05 41_[+3]_31 chrX:4809898-4809978 5.5e-05 21_[+3]_51 chrIV:9672645-9672725 5.5e-05 41_[+3]_31 chrIV:4402535-4402615 5.5e-05 72_[+3] chrX:8238701-8238781 5.5e-05 65_[+3]_7 chrX:2316335-2316415 5.5e-05 16_[+3]_56 chrV:6505581-6505661 5.5e-05 24_[+3]_48 chrII:7343134-7343214 7.8e-05 14_[+3]_58 chrI:11784535-11784615 7.8e-05 37_[+3]_35 chrX:14786925-14787005 7.8e-05 30_[+3]_42 chrIII:12015825-12015905 7.8e-05 5_[+3]_67 chrV:12071610-12071690 7.8e-05 12_[+3]_60 chrIII:5501778-5501858 7.8e-05 28_[+3]_44 chrIV:240466-240546 9.3e-05 53_[+3]_19 chrX:8048796-8048876 9.3e-05 54_[+3]_18 chrIII:12009934-12010014 0.00012 1_[+3]_71 chrIV:1804760-1804840 0.00012 2_[+3]_70 chrV:13788113-13788193 0.00012 40_[+3]_32 chrX:13539898-13539978 0.00012 51_[+3]_21 chrII:15212614-15212694 0.00012 23_[+3]_49 chrIV:11636478-11636558 0.00012 34_[+3]_38 chrX:6741110-6741190 0.00014 33_[+3]_39 chrIV:8975106-8975186 0.00015 19_[+3]_53 chrI:1877828-1877908 0.00015 57_[+3]_15 chrI:8019136-8019216 0.00015 71_[+3]_1 chrV:11822616-11822696 0.00018 51_[+3]_21 chrIV:16169935-16170015 0.00027 25_[+3]_47 chrV:7413281-7413361 0.00027 19_[+3]_53 chrIV:8028449-8028529 0.00027 67_[+3]_5 chrX:16902043-16902123 0.00027 53_[+3]_19 chrX:2317617-2317697 0.00027 27_[+3]_45 chrX:8026881-8026961 0.00027 51_[+3]_21 chrX:15073029-15073109 0.00027 6_[+3]_66 chrIV:17441407-17441487 0.00027 10_[+3]_62 chrX:11536596-11536676 0.00027 34_[+3]_38 chrIII:5841879-5841959 0.00027 13_[+3]_59 chrII:5874310-5874390 0.00027 11_[+3]_61 chrIV:11008417-11008497 0.00027 23_[+3]_49 chrIII:13064935-13065015 0.0003 [+3]_72 chrX:785507-785587 0.0003 16_[+3]_56 chrX:1339059-1339139 0.0003 70_[+3]_2 chrX:6205042-6205122 0.0003 23_[+3]_49 chrII:8128418-8128498 0.00036 26_[+3]_46 chrIV:14445381-14445461 0.00036 26_[+3]_46 chrIII:9500443-9500523 0.00036 68_[+3]_4 chrV:11121415-11121495 0.00042 6_[+3]_66 chrII:15205458-15205538 0.00042 35_[+3]_37 chrIII:7488449-7488529 0.00042 22_[+3]_50 chrIV:8146370-8146450 0.00042 31_[+3]_41 chrX:17427927-17428007 0.00044 61_[+3]_11 chrII:8813820-8813900 0.00044 62_[+3]_10 chrI:11940105-11940185 0.00044 41_[+3]_31 chrIII:11262323-11262403 0.00051 4_[+3]_68 chrII:8131798-8131878 0.0006 64_[+3]_8 chrII:7874130-7874210 0.0006 13_[+3]_59 chrX:2582328-2582408 0.0006 28_[+3]_44 chrIV:15901257-15901337 0.00068 25_[+3]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAYGTGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCAYGTGA width=8 seqs=69 chrIV:9090697-9090777 ( 38) TCACGTGA 1 chrX:2075257-2075337 ( 58) TCACGTGA 1 chrIV:13911089-13911169 ( 27) TCACGTGA 1 chrIII:2804629-2804709 ( 43) TCACGTGA 1 chrX:9638967-9639047 ( 64) TCACGTGA 1 chrIV:9534499-9534579 ( 51) TCACGTGA 1 chrII:10557405-10557485 ( 56) CCACGTGA 1 chrII:8741428-8741508 ( 50) CCACGTGA 1 chrII:12622324-12622404 ( 54) TCACGTGG 1 chrIII:5877028-5877108 ( 50) TCACGTGG 1 chrX:2802923-2803003 ( 51) TCATGTGA 1 chrII:5698423-5698503 ( 32) TCATGTGA 1 chrII:10446459-10446539 ( 42) TCATGTGA 1 chrX:4809898-4809978 ( 22) TCATGTGA 1 chrIV:9672645-9672725 ( 42) TCACGTGG 1 chrIV:4402535-4402615 ( 73) TCATGTGA 1 chrX:8238701-8238781 ( 66) TCATGTGA 1 chrX:2316335-2316415 ( 17) TCATGTGA 1 chrV:6505581-6505661 ( 25) TCACGTGG 1 chrII:7343134-7343214 ( 15) CCATGTGA 1 chrI:11784535-11784615 ( 38) CCATGTGA 1 chrX:14786925-14787005 ( 31) CCATGTGA 1 chrIII:12015825-12015905 ( 6) CCATGTGA 1 chrV:12071610-12071690 ( 13) CCACGTGG 1 chrIII:5501778-5501858 ( 29) CCATGTGA 1 chrIV:240466-240546 ( 54) TCATGTGG 1 chrX:8048796-8048876 ( 55) TCATGTGG 1 chrIII:12009934-12010014 ( 2) TCACATGA 1 chrIV:1804760-1804840 ( 3) GCACGTGA 1 chrV:13788113-13788193 ( 41) TCACATGA 1 chrX:13539898-13539978 ( 52) GCACGTGA 1 chrII:15212614-15212694 ( 24) TCACATGA 1 chrIV:11636478-11636558 ( 35) GCACGTGA 1 chrX:6741110-6741190 ( 34) TCTCGTGA 1 chrIV:8975106-8975186 ( 20) TCACCTGA 1 chrI:1877828-1877908 ( 58) TCACCTGA 1 chrI:8019136-8019216 ( 72) TCACCTGA 1 chrV:11822616-11822696 ( 52) CCACATGA 1 chrIV:16169935-16170015 ( 26) CCACCTGA 1 chrV:7413281-7413361 ( 20) TCACGTGC 1 chrIV:8028449-8028529 ( 68) TCACGTGC 1 chrX:16902043-16902123 ( 54) CCACCTGA 1 chrX:2317617-2317697 ( 28) TCATATGA 1 chrX:8026881-8026961 ( 52) TCACATGG 1 chrX:15073029-15073109 ( 7) TCATATGA 1 chrIV:17441407-17441487 ( 11) GCACGTGG 1 chrX:11536596-11536676 ( 35) GCATGTGA 1 chrIII:5841879-5841959 ( 14) CCACCTGA 1 chrII:5874310-5874390 ( 12) TCACATGG 1 chrIV:11008417-11008497 ( 24) TCATATGA 1 chrIII:13064935-13065015 ( 1) TCTTGTGA 1 chrX:785507-785587 ( 17) TCTTGTGA 1 chrX:1339059-1339139 ( 71) TCTCGTGG 1 chrX:6205042-6205122 ( 24) TCTCGTGG 1 chrII:8128418-8128498 ( 27) TCACGAGA 1 chrIV:14445381-14445461 ( 27) TCAGGTGA 1 chrIII:9500443-9500523 ( 69) TCAGGTGA 1 chrV:11121415-11121495 ( 7) CCACGTGC 1 chrII:15205458-15205538 ( 36) TCACGTGT 1 chrIII:7488449-7488529 ( 23) CCACATGG 1 chrIV:8146370-8146450 ( 32) TCACGTGT 1 chrX:17427927-17428007 ( 62) CCTTGTGA 1 chrII:8813820-8813900 ( 63) CCTTGTGA 1 chrI:11940105-11940185 ( 42) CCTCGTGG 1 chrIII:11262323-11262403 ( 5) TCATATGG 1 chrII:8131798-8131878 ( 65) TCATCTGG 1 chrII:7874130-7874210 ( 14) CCACGAGA 1 chrX:2582328-2582408 ( 29) GCTCGTGA 1 chrIV:15901257-15901337 ( 26) TCACGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAYGTGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85237 E= 2.9e-011 -1275 22 -131 118 -1275 216 -1275 -1275 167 -1275 -1275 -114 -1275 148 -290 27 -77 -114 177 -1275 -265 -1275 -1275 173 -1275 -1275 221 -1275 132 -236 19 -331 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAYGTGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.9e-011 0.000000 0.260870 0.086957 0.652174 0.000000 1.000000 0.000000 0.000000 0.869565 0.000000 0.000000 0.130435 0.000000 0.623188 0.028986 0.347826 0.159420 0.101449 0.739130 0.000000 0.043478 0.000000 0.000000 0.956522 0.000000 0.000000 1.000000 0.000000 0.681159 0.043478 0.246377 0.028986 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAYGTGA MEME-3 regular expression -------------------------------------------------------------------------------- [TC]CA[CT]GTG[AG] -------------------------------------------------------------------------------- Time 14.28 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTMT MEME-4 width = 8 sites = 21 llr = 204 E-value = 3.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTMT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::3: pos.-specific C a::a:26: probability G ::a:a::: matrix T :a:::8:a bits 2.2 * * * 2.0 * * * 1.8 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ****** * (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTMT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3759147-3759227 16 1.24e-05 GTCGTCGTAT CTGCGTCT CGCGGGGCGC chrV:6323146-6323226 9 1.24e-05 ATGTCCTT CTGCGTCT CTTGATTACC chrIV:2785215-2785295 21 1.24e-05 CTTAATAtct ctgcgtct ctcactctct chrIII:7911796-7911876 7 1.24e-05 AACTAT CTGCGTCT CTTGATTTTC chrII:2649172-2649252 47 1.24e-05 GAAAAAGTGT CTGCGTCT CTTCAAAAAA chrIV:15901257-15901337 65 1.24e-05 CAAAAAATGT CTGCGTCT CACCAAAT chrII:3209411-3209491 58 1.24e-05 TCTTTCTCTC CTGCGTCT AGGTTCTCTC chrIV:1623912-1623992 48 1.24e-05 TCTTCTTTCT CTGCGTCT CTTCTCTCTC chrII:5572246-5572326 46 1.24e-05 GTTTTTCTTC CTGCGTCT CTTCCATCAC chrII:11737530-11737610 40 1.24e-05 TCCCAAGGAC CTGCGTCT CTTCAGGATT chrIV:763771-763851 48 1.24e-05 AATTAACCGT CTGCGTCT CGTTACAGAA chrI:6166798-6166878 9 2.75e-05 ATGACTGT CTGCGTAT CTTCCATTCA chrX:11536596-11536676 19 2.75e-05 TATTGATTCC CTGCGTAT CAAATTGCGC chrIV:8146370-8146450 19 2.75e-05 GTGTAACCTC CTGCGTAT CTCAATCACG chrX:5942317-5942397 6 3.71e-05 TATGT CTGCGCCT TCATTTTCCA chrX:4818398-4818478 61 4.88e-05 TCGTAGAATT CTGCGCAT CGGACGCAAT chrV:12071610-12071690 43 4.88e-05 GAAAGACTAC CTGCGCAT CTTCCGATGA chrX:12668268-12668348 53 4.88e-05 GACACGCAGA CTGCGCAT GACCATATAA chrX:9638967-9639047 23 4.88e-05 CTGAAGGACA CTGCGCAT AATATGGAAA chrX:12990916-12990996 40 6.07e-05 GCACATCACC CTGCGTGT ACGTAACACA chrV:11531169-11531249 65 7.67e-05 ACCTCCGTGT CTGTGTCT GTTTTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTMT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3759147-3759227 1.2e-05 15_[+4]_57 chrV:6323146-6323226 1.2e-05 8_[+4]_64 chrIV:2785215-2785295 1.2e-05 20_[+4]_52 chrIII:7911796-7911876 1.2e-05 6_[+4]_66 chrII:2649172-2649252 1.2e-05 46_[+4]_26 chrIV:15901257-15901337 1.2e-05 64_[+4]_8 chrII:3209411-3209491 1.2e-05 57_[+4]_15 chrIV:1623912-1623992 1.2e-05 47_[+4]_25 chrII:5572246-5572326 1.2e-05 45_[+4]_27 chrII:11737530-11737610 1.2e-05 39_[+4]_33 chrIV:763771-763851 1.2e-05 47_[+4]_25 chrI:6166798-6166878 2.7e-05 8_[+4]_64 chrX:11536596-11536676 2.7e-05 18_[+4]_54 chrIV:8146370-8146450 2.7e-05 18_[+4]_54 chrX:5942317-5942397 3.7e-05 5_[+4]_67 chrX:4818398-4818478 4.9e-05 60_[+4]_12 chrV:12071610-12071690 4.9e-05 42_[+4]_30 chrX:12668268-12668348 4.9e-05 52_[+4]_20 chrX:9638967-9639047 4.9e-05 22_[+4]_50 chrX:12990916-12990996 6.1e-05 39_[+4]_33 chrV:11531169-11531249 7.7e-05 64_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTMT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTMT width=8 seqs=21 chrI:3759147-3759227 ( 16) CTGCGTCT 1 chrV:6323146-6323226 ( 9) CTGCGTCT 1 chrIV:2785215-2785295 ( 21) CTGCGTCT 1 chrIII:7911796-7911876 ( 7) CTGCGTCT 1 chrII:2649172-2649252 ( 47) CTGCGTCT 1 chrIV:15901257-15901337 ( 65) CTGCGTCT 1 chrII:3209411-3209491 ( 58) CTGCGTCT 1 chrIV:1623912-1623992 ( 48) CTGCGTCT 1 chrII:5572246-5572326 ( 46) CTGCGTCT 1 chrII:11737530-11737610 ( 40) CTGCGTCT 1 chrIV:763771-763851 ( 48) CTGCGTCT 1 chrI:6166798-6166878 ( 9) CTGCGTAT 1 chrX:11536596-11536676 ( 19) CTGCGTAT 1 chrIV:8146370-8146450 ( 19) CTGCGTAT 1 chrX:5942317-5942397 ( 6) CTGCGCCT 1 chrX:4818398-4818478 ( 61) CTGCGCAT 1 chrV:12071610-12071690 ( 43) CTGCGCAT 1 chrX:12668268-12668348 ( 53) CTGCGCAT 1 chrX:9638967-9639047 ( 23) CTGCGCAT 1 chrX:12990916-12990996 ( 40) CTGCGTGT 1 chrV:11531169-11531249 ( 65) CTGTGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTMT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 3.5e-005 -1104 216 -1104 -1104 -1104 -1104 -1104 180 -1104 -1104 221 -1104 -1104 209 -1104 -259 -1104 -1104 221 -1104 -1104 9 -1104 140 29 147 -218 -1104 -1104 -1104 -1104 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTMT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.5e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.952381 0.000000 0.047619 0.000000 0.000000 1.000000 0.000000 0.000000 0.238095 0.000000 0.761905 0.333333 0.619048 0.047619 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTMT MEME-4 regular expression -------------------------------------------------------------------------------- CTGCG[TC][CA]T -------------------------------------------------------------------------------- Time 17.65 secs. ******************************************************************************** ******************************************************************************** MOTIF ARATAGWG MEME-5 width = 8 sites = 22 llr = 197 E-value = 1.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARATAGWG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 76a:a:5: pos.-specific C 3::::::: probability G :4:::a:a matrix T :::a::5: bits 2.2 * * 2.0 * * 1.8 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 ****** * (12.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAATAGAG consensus CG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAGWG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:9090697-9090777 26 2.04e-05 TAGAAGGACG AAATAGAG AAGGTCACGT chrII:12996385-12996465 3 2.04e-05 AG AAATAGAG AAGAAAACAA chrII:3929640-3929720 7 2.04e-05 AATAGA AAATAGAG AATTAGAGAG chrV:13790695-13790775 35 2.04e-05 TTTCACAAAG AAATAGAG ACCGACACAC chrI:7147748-7147828 11 4.19e-05 CATCCGTCGA AAATAGTG GGCTCGAATT chrV:14322954-14323034 9 4.19e-05 AAACATAT AAATAGTG TAAGAGAACG chrX:3788641-3788721 11 4.19e-05 CTTCATGCGA AAATAGTG CAGCAATCAC chrX:5659754-5659834 26 4.19e-05 TCTTCACTAA AAATAGTG AGGGAGGTGC chrX:12668268-12668348 27 4.19e-05 ACCATTCTAG AAATAGTG TATCAGGAGA chrIV:8146370-8146450 51 4.19e-05 CTATCTCATA AAATAGTG ATCGATGAAC chrI:13060476-13060556 48 5.80e-05 GTTGAGGGAT AGATAGAG GTCAGTTTGT chrIV:13911089-13911169 50 5.80e-05 ACTTTCTAGA AGATAGAG AAAGTCTACA chrIV:8922091-8922171 42 7.50e-05 TTCAGTAGCG AGATAGTG CAAAAGAATA chrIV:4031176-4031256 68 7.50e-05 TCTCTGGCGA AGATAGTG GATAT chrIV:15398817-15398897 29 7.50e-05 TTATTCCATG AGATAGTG TGCTGGACTG chrII:11830794-11830874 3 9.16e-05 AA CAATAGAG CAACTTTGCA chrV:11822616-11822696 19 9.16e-05 GTACGCAGAG CAATAGAG ATTTTGAAAA chrV:5204329-5204409 51 9.16e-05 ATCAGTGTTG CAATAGAG CGCACATGCA chrV:9633451-9633531 69 1.09e-04 TCATCAATAC CAATAGTG ATAG chrI:14642655-14642735 26 1.22e-04 CTACACATGA CGATAGAG CGCGTTTGTA chrIII:9752996-9753076 39 1.22e-04 GATATACGAA CGATAGAG CACACAGTGT chrX:15327381-15327461 37 1.36e-04 GATTTGTTGG CGATAgtg tgtgtgtgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAGWG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:9090697-9090777 2e-05 25_[+5]_47 chrII:12996385-12996465 2e-05 2_[+5]_70 chrII:3929640-3929720 2e-05 6_[+5]_66 chrV:13790695-13790775 2e-05 34_[+5]_38 chrI:7147748-7147828 4.2e-05 10_[+5]_62 chrV:14322954-14323034 4.2e-05 8_[+5]_64 chrX:3788641-3788721 4.2e-05 10_[+5]_62 chrX:5659754-5659834 4.2e-05 25_[+5]_47 chrX:12668268-12668348 4.2e-05 26_[+5]_46 chrIV:8146370-8146450 4.2e-05 50_[+5]_22 chrI:13060476-13060556 5.8e-05 47_[+5]_25 chrIV:13911089-13911169 5.8e-05 49_[+5]_23 chrIV:8922091-8922171 7.5e-05 41_[+5]_31 chrIV:4031176-4031256 7.5e-05 67_[+5]_5 chrIV:15398817-15398897 7.5e-05 28_[+5]_44 chrII:11830794-11830874 9.2e-05 2_[+5]_70 chrV:11822616-11822696 9.2e-05 18_[+5]_54 chrV:5204329-5204409 9.2e-05 50_[+5]_22 chrV:9633451-9633531 0.00011 68_[+5]_4 chrI:14642655-14642735 0.00012 25_[+5]_47 chrIII:9752996-9753076 0.00012 38_[+5]_34 chrX:15327381-15327461 0.00014 36_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAGWG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARATAGWG width=8 seqs=22 chrIV:9090697-9090777 ( 26) AAATAGAG 1 chrII:12996385-12996465 ( 3) AAATAGAG 1 chrII:3929640-3929720 ( 7) AAATAGAG 1 chrV:13790695-13790775 ( 35) AAATAGAG 1 chrI:7147748-7147828 ( 11) AAATAGTG 1 chrV:14322954-14323034 ( 9) AAATAGTG 1 chrX:3788641-3788721 ( 11) AAATAGTG 1 chrX:5659754-5659834 ( 26) AAATAGTG 1 chrX:12668268-12668348 ( 27) AAATAGTG 1 chrIV:8146370-8146450 ( 51) AAATAGTG 1 chrI:13060476-13060556 ( 48) AGATAGAG 1 chrIV:13911089-13911169 ( 50) AGATAGAG 1 chrIV:8922091-8922171 ( 42) AGATAGTG 1 chrIV:4031176-4031256 ( 68) AGATAGTG 1 chrIV:15398817-15398897 ( 29) AGATAGTG 1 chrII:11830794-11830874 ( 3) CAATAGAG 1 chrV:11822616-11822696 ( 19) CAATAGAG 1 chrV:5204329-5204409 ( 51) CAATAGAG 1 chrV:9633451-9633531 ( 69) CAATAGTG 1 chrI:14642655-14642735 ( 26) CGATAGAG 1 chrIII:9752996-9753076 ( 39) CGATAGAG 1 chrX:15327381-15327461 ( 37) CGATAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAGWG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 1.0e+002 132 51 -1110 -1110 122 -1110 75 -1110 187 -1110 -1110 -1110 -1110 -1110 -1110 180 187 -1110 -1110 -1110 -1110 -1110 221 -1110 87 -1110 -1110 80 -1110 -1110 221 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAGWG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.0e+002 0.681818 0.318182 0.000000 0.000000 0.636364 0.000000 0.363636 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAGWG MEME-5 regular expression -------------------------------------------------------------------------------- [AC][AG]ATAG[AT]G -------------------------------------------------------------------------------- Time 21.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:11636478-11636558 1.00e-02 80 chrX:6205042-6205122 3.00e-01 80 chrV:6505581-6505661 3.00e-03 24_[+3(5.53e-05)]_48 chrX:16786168-16786248 5.62e-02 20_[+2(5.17e-05)]_52 chrI:6574652-6574732 9.07e-01 80 chrIV:9534499-9534579 1.31e-02 50_[+3(1.43e-05)]_22 chrIV:10972003-10972083 5.86e-02 9_[+2(3.90e-05)]_63 chrX:2316335-2316415 4.92e-03 16_[+3(5.53e-05)]_56 chrIV:763771-763851 2.55e-02 47_[+4(1.24e-05)]_25 chrX:10238269-10238349 1.35e-01 80 chrX:6020237-6020317 5.28e-01 80 chrV:10891112-10891192 7.19e-01 80 chrX:8238701-8238781 3.05e-02 65_[+3(5.53e-05)]_7 chrIV:14675887-14675967 1.73e-02 80 chrI:6340113-6340193 1.86e-01 80 chrIV:15398817-15398897 1.11e-02 28_[+5(7.50e-05)]_44 chrIV:8302081-8302161 3.07e-01 80 chrX:1527570-1527650 4.03e-02 56_[+1(7.14e-05)]_16 chrV:13790695-13790775 5.51e-02 34_[+5(2.04e-05)]_38 chrX:7659869-7659949 2.25e-01 80 chrX:12990916-12990996 5.69e-02 39_[+4(6.07e-05)]_33 chrI:5826731-5826811 1.05e-01 13_[+1(7.14e-05)]_59 chrX:9638967-9639047 3.78e-04 22_[+4(4.88e-05)]_33_[+3(1.43e-05)]_\ 9 chrII:9573611-9573691 8.87e-02 71_[+2(3.90e-05)]_1 chrIII:4412252-4412332 7.93e-03 37_[+2(3.90e-05)]_35 chrIV:4402535-4402615 5.00e-03 72_[+3(5.53e-05)] chrII:11737530-11737610 1.57e-05 39_[+4(1.24e-05)]_14_[+2(8.44e-05)]_\ 11 chrIII:4317196-4317276 8.02e-02 54_[+2(6.82e-05)]_18 chrI:8019136-8019216 3.58e-02 34_[+2(8.44e-05)]_38 chrX:3023932-3024012 3.42e-01 80 chrI:2586292-2586372 1.58e-01 80 chrII:5572246-5572326 2.22e-02 45_[+4(1.24e-05)]_27 chrIII:10007133-10007213 2.22e-02 71_[+1(7.14e-05)]_1 chrIV:8146370-8146450 2.82e-04 18_[+4(2.75e-05)]_24_[+5(4.19e-05)]_\ 22 chrX:12668268-12668348 3.21e-04 26_[+5(4.19e-05)]_18_[+4(4.88e-05)]_\ 20 chrII:3929640-3929720 1.24e-03 6_[+5(2.04e-05)]_5_[+1(7.14e-05)]_\ 53 chrIV:1623912-1623992 1.29e-03 47_[+4(1.24e-05)]_2_[+2(1.70e-05)]_\ 15 chrX:9549125-9549205 8.97e-01 80 chrI:7005485-7005565 1.22e-01 80 chrX:6741110-6741190 1.63e-02 50_[+2(3.90e-05)]_22 chrV:9165449-9165529 8.21e-01 80 chrI:5400398-5400478 1.90e-01 33_[+2(8.44e-05)]_39 chrV:11531169-11531249 3.38e-02 64_[+4(7.67e-05)]_8 chrIII:2804629-2804709 1.44e-03 42_[+3(1.43e-05)]_30 chrIII:7488449-7488529 2.11e-01 80 chrV:9633451-9633531 1.65e-02 80 chrII:3209411-3209491 2.61e-05 49_[+2(3.90e-05)]_[+4(1.24e-05)]_15 chrI:1877828-1877908 7.67e-04 4_[+1(7.14e-05)]_8_[+1(7.14e-05)]_\ 52 chrII:7090294-7090374 4.42e-04 4_[+2(5.17e-05)]_42_[+1(2.24e-05)]_\ 18 chrIV:9672645-9672725 2.31e-03 41_[+3(5.53e-05)]_31 chrII:15212614-15212694 2.40e-01 80 chrIII:9752996-9753076 6.30e-02 80 chrX:4809898-4809978 1.11e-01 21_[+3(5.53e-05)]_51 chrIV:13911089-13911169 6.05e-04 26_[+3(1.43e-05)]_15_[+5(5.80e-05)]_\ 23 chrIV:4031176-4031256 1.20e-02 67_[+5(7.50e-05)]_5 chrV:11616099-11616179 1.65e-01 80 chrIV:15901257-15901337 2.34e-03 64_[+4(1.24e-05)]_8 chrI:6885314-6885394 3.87e-02 80 chrII:6892019-6892099 2.78e-03 80 chrX:7585775-7585855 1.57e-01 80 chrII:8741428-8741508 1.05e-01 49_[+3(2.54e-05)]_23 chrIII:10816141-10816221 6.48e-02 71_[+2(1.70e-05)]_1 chrI:11497963-11498043 9.19e-02 80 chrIV:8869789-8869869 8.52e-01 80 chrI:11940105-11940185 7.01e-03 80 chrIV:11008417-11008497 8.94e-03 64_[+2(6.82e-05)]_8 chrI:12164791-12164871 1.16e-01 29_[+1(7.14e-05)]_43 chrIV:8036622-8036702 1.03e-03 24_[+1(9.45e-05)]_10_[+2(1.70e-05)]_\ 30 chrX:13539898-13539978 2.45e-02 80 chrII:10446459-10446539 1.02e-03 41_[+3(5.53e-05)]_22_[+1(7.14e-05)]_\ 1 chrIV:4472915-4472995 5.35e-01 80 chrV:20693049-20693129 1.94e-01 80 chrII:2649172-2649252 9.26e-05 11_[+1(7.14e-05)]_27_[+4(1.24e-05)]_\ 26 chrII:15205458-15205538 1.75e-02 53_[+2(1.70e-05)]_[+2(1.70e-05)]_11 chrIII:9620378-9620458 5.37e-02 3_[+2(8.44e-05)]_69 chrI:5550571-5550651 2.95e-01 80 chrX:2582328-2582408 1.33e-01 80 chrIII:5501778-5501858 1.49e-02 28_[+3(7.84e-05)]_4_[+3(7.84e-05)]_\ 32 chrII:5874310-5874390 4.20e-02 34_[+1(9.45e-05)]_38 chrII:7874130-7874210 1.33e-01 80 chrIII:5841879-5841959 6.37e-03 80 chrII:5698423-5698503 5.66e-02 31_[+3(5.53e-05)]_41 chrX:11536596-11536676 5.47e-03 18_[+4(2.75e-05)]_54 chrIV:11489730-11489810 8.77e-04 3_[+2(1.70e-05)]_6_[+2(1.70e-05)]_\ [+2(1.70e-05)]_47 chrX:15327381-15327461 8.08e-02 80 chrIII:6360308-6360388 2.80e-01 80 chrIV:9335968-9336048 1.03e-01 80 chrX:9667613-9667693 5.53e-02 80 chrIII:5951752-5951832 6.69e-01 80 chrIII:9500443-9500523 2.09e-02 14_[+2(3.90e-05)]_58 chrI:13061205-13061285 1.25e-02 3_[+5(5.80e-05)]_[+5(4.19e-05)]_61 chrI:13060476-13060556 3.67e-02 47_[+5(5.80e-05)]_25 chrIV:17441407-17441487 1.56e-01 80 chrIII:96323-96403 2.56e-02 16_[+1(2.24e-05)]_56 chrX:13351017-13351097 1.25e-01 80 chrIII:7911796-7911876 8.64e-03 6_[+4(1.24e-05)]_66 chrII:9601836-9601916 8.32e-02 80 chrIV:8975106-8975186 1.76e-02 80 chrIV:14445381-14445461 3.71e-02 80 chrI:6259227-6259307 6.14e-01 80 chrIV:9757243-9757323 8.85e-03 60_[+2(3.90e-05)]_12 chrII:8813820-8813900 2.34e-01 80 chrIII:13012109-13012189 6.70e-01 80 chrV:7759426-7759506 2.52e-01 80 chrIII:7217245-7217325 1.76e-02 9_[+2(3.90e-05)]_63 chrX:13754637-13754717 9.94e-02 80 chrX:15073029-15073109 5.01e-02 80 chrX:2802923-2803003 9.83e-02 50_[+3(5.53e-05)]_22 chrX:8026881-8026961 1.68e-01 80 chrX:17427927-17428007 1.05e-02 18_[+1(7.14e-05)]_54 chrV:5204329-5204409 4.23e-02 50_[+5(9.16e-05)]_22 chrX:8048796-8048876 9.14e-02 54_[+3(9.31e-05)]_18 chrI:5610662-5610742 2.88e-02 80 chrII:12996385-12996465 2.49e-03 2_[+5(2.04e-05)]_28_[+1(2.24e-05)]_\ 34 chrX:5659754-5659834 4.17e-02 25_[+5(4.19e-05)]_47 chrIII:6798081-6798161 8.78e-01 80 chrIV:9670122-9670202 9.04e-02 15_[+1(7.14e-05)]_10_[+1(9.45e-05)]_\ 39 chrV:13788113-13788193 6.47e-02 80 chrIV:1804760-1804840 1.16e-03 26_[+1(2.24e-05)]_46 chrII:626091-626171 3.26e-03 25_[+1(2.24e-05)]_47 chrIV:2785215-2785295 3.59e-03 20_[+4(1.24e-05)]_3_[+2(8.44e-05)]_\ 41 chrV:2615426-2615506 8.98e-02 80 chrX:13113616-13113696 1.25e-01 80 chrX:6825984-6826064 2.04e-01 80 chrIV:1389155-1389235 1.38e-01 15_[+2(5.17e-05)]_57 chrX:12899269-12899349 6.74e-02 80 chrIV:7047115-7047195 2.68e-01 80 chrIII:5877028-5877108 1.13e-01 49_[+3(5.53e-05)]_23 chrI:9448166-9448246 9.28e-01 80 chrX:2317617-2317697 2.93e-03 67_[+1(7.14e-05)]_5 chrV:11060729-11060809 7.35e-03 80 chrII:8131798-8131878 1.71e-01 80 chrIV:10976071-10976151 8.30e-03 33_[+1(2.24e-05)]_8_[+1(7.14e-05)]_\ 23 chrI:3754606-3754686 2.92e-01 80 chrX:2075257-2075337 6.57e-03 57_[+3(1.43e-05)]_15 chrIV:9090697-9090777 3.68e-04 25_[+5(2.04e-05)]_4_[+3(1.43e-05)]_\ 35 chrX:16902043-16902123 1.73e-03 80 chrIV:10180297-10180377 4.23e-01 80 chrV:5272732-5272812 9.09e-01 80 chrII:8128418-8128498 1.37e-02 80 chrX:6642960-6643040 4.39e-03 80 chrX:13141532-13141612 4.35e-03 17_[+1(7.14e-05)]_55 chrV:6323146-6323226 2.47e-03 8_[+4(1.24e-05)]_64 chrX:4808973-4809053 4.98e-01 80 chrI:7883889-7883969 2.23e-03 8_[+1(2.24e-05)]_64 chrIV:5565307-5565387 6.62e-05 17_[+2(6.82e-05)]_22_[+1(7.14e-05)]_\ 25 chrI:7479380-7479460 1.00e-01 80 chrII:9260204-9260284 1.26e-01 63_[+1(7.14e-05)]_9 chrX:13147280-13147360 1.08e-01 30_[+1(7.14e-05)]_42 chrIV:8028449-8028529 9.47e-02 80 chrV:12071610-12071690 1.96e-03 12_[+3(7.84e-05)]_22_[+4(4.88e-05)]_\ 30 chrV:13073307-13073387 4.00e-01 80 chrV:4570400-4570480 9.57e-01 80 chrV:777452-777532 3.65e-02 80 chrX:3788641-3788721 2.92e-03 10_[+5(4.19e-05)]_10_[+1(9.45e-05)]_\ 44 chrV:8935278-8935358 7.38e-01 80 chrII:8143461-8143541 4.86e-02 67_[+2(3.90e-05)]_5 chrIV:5765816-5765896 1.07e-01 80 chrI:8962056-8962136 9.61e-02 7_[+2(8.44e-05)]_65 chrX:5942317-5942397 3.11e-03 5_[+4(3.71e-05)]_67 chrV:19190188-19190268 9.15e-01 80 chrIV:1056632-1056712 8.21e-01 80 chrX:6279734-6279814 5.95e-01 80 chrV:9741018-9741098 9.08e-01 80 chrX:8236147-8236227 2.07e-01 19_[+2(8.44e-05)]_53 chrIII:6988261-6988341 5.65e-01 80 chrII:10525292-10525372 5.64e-03 80 chrV:11121415-11121495 9.94e-03 30_[+1(7.14e-05)]_42 chrIV:8922091-8922171 4.91e-02 41_[+5(7.50e-05)]_31 chrIII:2401311-2401391 7.76e-01 80 chrII:9262247-9262327 9.07e-01 80 chrII:5201113-5201193 9.14e-02 10_[+2(1.70e-05)]_[+2(1.70e-05)]_54 chrII:5605600-5605680 8.30e-02 52_[+1(9.45e-05)]_20 chrIII:6170223-6170303 4.82e-02 43_[+1(2.24e-05)]_29 chrIII:3908356-3908436 5.73e-03 3_[+4(7.67e-05)]_33_[+2(5.17e-05)]_\ 28 chrIV:10909860-10909940 4.06e-03 17_[+4(2.75e-05)]_55 chrX:1339059-1339139 3.09e-02 80 chrIII:8780631-8780711 2.63e-01 80 chrIII:12015825-12015905 3.91e-02 5_[+3(7.84e-05)]_67 chrX:1122363-1122443 5.49e-01 80 chrII:13477378-13477458 4.99e-01 80 chrV:10867723-10867803 1.82e-01 80 chrI:5025547-5025627 5.54e-02 80 chrI:663639-663719 4.35e-01 80 chrIII:491257-491337 1.05e-01 80 chrX:785507-785587 1.28e-02 80 chrI:14642655-14642735 1.11e-01 80 chrIV:2890721-2890801 7.93e-01 80 chrI:1695197-1695277 1.34e-01 10_[+2(1.70e-05)]_62 chrIV:5805620-5805700 1.82e-01 80 chrIV:12029948-12030028 2.23e-01 80 chrX:16704223-16704303 7.31e-02 80 chrIII:7978855-7978935 8.40e-02 80 chrIV:1108198-1108278 6.73e-01 80 chrV:14322954-14323034 5.15e-04 8_[+5(4.19e-05)]_64 chrI:9114044-9114124 2.05e-01 80 chrIV:6156983-6157063 3.78e-03 20_[+4(1.24e-05)]_52 chrI:13395228-13395308 2.89e-02 16_[+1(7.14e-05)]_8_[+1(2.24e-05)]_\ 40 chrIII:13064935-13065015 5.77e-02 80 chrX:14786925-14787005 3.20e-02 30_[+3(7.84e-05)]_42 chrV:2236038-2236118 1.63e-02 11_[+2(6.82e-05)]_61 chrV:1285879-1285959 1.75e-02 36_[+1(2.24e-05)]_36 chrIV:5561586-5561666 6.28e-03 63_[+2(1.70e-05)]_[+2(1.70e-05)]_1 chrIII:6362504-6362584 3.90e-01 80 chrIII:6402476-6402556 1.60e-01 80 chrI:10406155-10406235 9.37e-02 40_[+2(1.70e-05)]_32 chrI:6166798-6166878 3.77e-04 8_[+4(2.75e-05)]_64 chrII:9493489-9493569 9.02e-02 80 chrIII:6405281-6405361 1.05e-01 80 chrX:13008264-13008344 8.77e-01 80 chrI:11784535-11784615 1.22e-01 37_[+3(7.84e-05)]_35 chrX:9643213-9643293 4.75e-01 80 chrV:9094385-9094465 5.32e-03 80 chrV:11822616-11822696 6.45e-03 18_[+5(9.16e-05)]_54 chrV:13497622-13497702 2.58e-02 31_[+2(1.70e-05)]_41 chrX:10677675-10677755 3.21e-01 80 chrIV:240466-240546 3.57e-02 53_[+3(9.31e-05)]_19 chrV:19644086-19644166 8.29e-01 80 chrX:8018501-8018581 8.50e-01 80 chrIV:9868127-9868207 7.32e-02 80 chrIV:9321402-9321482 1.69e-01 80 chrX:4507262-4507342 9.56e-02 36_[+2(1.70e-05)]_36 chrIV:10714711-10714791 4.32e-03 7_[+2(5.17e-05)]_40_[+2(5.17e-05)]_\ 17 chrIV:1901173-1901253 1.46e-02 11_[+2(1.70e-05)]_61 chrV:7894124-7894204 7.97e-01 80 chrII:7343134-7343214 2.00e-02 14_[+3(7.84e-05)]_58 chrV:10031562-10031642 4.81e-02 80 chrII:12622324-12622404 1.98e-01 53_[+3(5.53e-05)]_19 chrV:7413281-7413361 2.95e-01 80 chrX:4818398-4818478 1.48e-01 60_[+4(4.88e-05)]_12 chrII:11830794-11830874 7.17e-03 2_[+5(9.16e-05)]_70 chrII:10557405-10557485 6.84e-02 55_[+3(2.54e-05)]_17 chrX:10566926-10567006 2.92e-01 80 chrI:3759147-3759227 1.54e-02 15_[+4(1.24e-05)]_57 chrV:14847467-14847547 5.21e-02 36_[+2(3.90e-05)]_36 chrIV:16169935-16170015 1.40e-02 48_[+2(1.70e-05)]_[+2(1.70e-05)]_\ [+2(1.70e-05)]_8 chrIII:12009934-12010014 1.30e-01 80 chrV:17981895-17981975 8.36e-01 80 chrIV:3368813-3368893 2.45e-01 80 chrIII:3273256-3273336 1.50e-03 12_[+1(7.14e-05)]_[+1(7.14e-05)]_43_\ [+2(3.90e-05)]_1 chrX:3837913-3837993 7.61e-01 80 chrX:11215639-11215719 3.48e-02 80 chrIII:4687251-4687331 8.37e-02 80 chrX:16157021-16157101 8.30e-05 1_[+1(9.45e-05)]_44_[+2(6.82e-05)]_\ 19 chrI:10691969-10692049 1.38e-02 80 chrIV:11026785-11026865 2.96e-01 80 chrV:8407157-8407237 4.62e-02 23_[+1(7.14e-05)]_49 chrI:7147748-7147828 1.58e-03 10_[+5(4.19e-05)]_10_[+1(2.24e-05)]_\ 44 chrII:9561036-9561116 2.16e-02 80 chrIII:11262323-11262403 3.56e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************