******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/snpc-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:14562797-14562877 1.0000 80 chrIV:16307104-16307184 1.0000 80 chrIV:16038142-16038222 1.0000 80 chrIV:5083956-5084036 1.0000 80 chrIV:15435555-15435635 1.0000 80 chrII:13665110-13665190 1.0000 80 chrIV:14444258-14444338 1.0000 80 chrX:16341957-16342037 1.0000 80 chrX:14680633-14680713 1.0000 80 chrIV:17058654-17058734 1.0000 80 chrII:12948409-12948489 1.0000 80 chrV:37424-37504 1.0000 80 chrIV:16035241-16035321 1.0000 80 chrIII:12848338-12848418 1.0000 80 chrIV:13695469-13695549 1.0000 80 chrIV:15369434-15369514 1.0000 80 chrX:16157691-16157771 1.0000 80 chrIV:15120903-15120983 1.0000 80 chrIV:16041150-16041230 1.0000 80 chrX:16309884-16309964 1.0000 80 chrIV:15283742-15283822 1.0000 80 chrIV:16028649-16028729 1.0000 80 chrIV:15410586-15410666 1.0000 80 chrIV:15152367-15152447 1.0000 80 chrIV:14891325-14891405 1.0000 80 chrIV:15585871-15585951 1.0000 80 chrIV:14525427-14525507 1.0000 80 chrX:16337127-16337207 1.0000 80 chrIV:17193649-17193729 1.0000 80 chrIV:15247540-15247620 1.0000 80 chrIV:15794148-15794228 1.0000 80 chrIV:6662815-6662895 1.0000 80 chrIV:16075557-16075637 1.0000 80 chrII:12383169-12383249 1.0000 80 chrIV:14335958-14336038 1.0000 80 chrIV:16709913-16709993 1.0000 80 chrIV:13687161-13687241 1.0000 80 chrIV:14755064-14755144 1.0000 80 chrIII:10524952-10525032 1.0000 80 chrIV:16873461-16873541 1.0000 80 chrIV:14864687-14864767 1.0000 80 chrX:14657567-14657647 1.0000 80 chrIV:15953861-15953941 1.0000 80 chrIV:14627544-14627624 1.0000 80 chrIV:15606588-15606668 1.0000 80 chrIV:14981104-14981184 1.0000 80 chrIV:16237127-16237207 1.0000 80 chrIV:14467028-14467108 1.0000 80 chrIV:6140490-6140570 1.0000 80 chrIV:14383618-14383698 1.0000 80 chrIV:13700964-13701044 1.0000 80 chrIV:15002943-15003023 1.0000 80 chrII:6990054-6990134 1.0000 80 chrIV:14307761-14307841 1.0000 80 chrIV:14591240-14591320 1.0000 80 chrII:14945694-14945774 1.0000 80 chrIV:14564012-14564092 1.0000 80 chrIV:15119478-15119558 1.0000 80 chrX:15222932-15223012 1.0000 80 chrIV:13883414-13883494 1.0000 80 chrIV:15982891-15982971 1.0000 80 chrX:14637581-14637661 1.0000 80 chrIV:16917496-16917576 1.0000 80 chrIV:17150582-17150662 1.0000 80 chrIV:15825117-15825197 1.0000 80 chrIV:588818-588898 1.0000 80 chrIV:15554951-15555031 1.0000 80 chrIV:15868442-15868522 1.0000 80 chrX:15345519-15345599 1.0000 80 chrV:7595297-7595377 1.0000 80 chrIV:15950110-15950190 1.0000 80 chrIV:14695234-14695314 1.0000 80 chrI:4389350-4389430 1.0000 80 chrIV:15136261-15136341 1.0000 80 chrV:9392123-9392203 1.0000 80 chrX:872103-872183 1.0000 80 chrIV:5309295-5309375 1.0000 80 chrIV:15572406-15572486 1.0000 80 chrX:15388475-15388555 1.0000 80 chrII:15019950-15020030 1.0000 80 chrIV:16474527-16474607 1.0000 80 chrI:13317125-13317205 1.0000 80 chrIV:14863973-14864053 1.0000 80 chrIV:14420362-14420442 1.0000 80 chrII:14010817-14010897 1.0000 80 chrIV:13855576-13855656 1.0000 80 chrIV:15864764-15864844 1.0000 80 chrX:2960849-2960929 1.0000 80 chrV:7062971-7063051 1.0000 80 chrIV:6164855-6164935 1.0000 80 chrIV:16442789-16442869 1.0000 80 chrIV:7960421-7960501 1.0000 80 chrII:11842948-11843028 1.0000 80 chrIV:15219078-15219158 1.0000 80 chrIV:15997318-15997398 1.0000 80 chrIII:11124020-11124100 1.0000 80 chrIV:5950085-5950165 1.0000 80 chrIV:14932721-14932801 1.0000 80 chrIV:13588775-13588855 1.0000 80 chrIV:5261889-5261969 1.0000 80 chrIV:6460787-6460867 1.0000 80 chrIV:15844212-15844292 1.0000 80 chrIV:16535030-16535110 1.0000 80 chrIV:14377409-14377489 1.0000 80 chrIV:16808740-16808820 1.0000 80 chrV:12047865-12047945 1.0000 80 chrIV:14387655-14387735 1.0000 80 chrIV:15392042-15392122 1.0000 80 chrIV:15703831-15703911 1.0000 80 chrIV:14305874-14305954 1.0000 80 chrIV:15365642-15365722 1.0000 80 chrV:14362150-14362230 1.0000 80 chrIV:5833012-5833092 1.0000 80 chrIV:15717685-15717765 1.0000 80 chrIV:13814510-13814590 1.0000 80 chrIV:16044215-16044295 1.0000 80 chrIV:15525051-15525131 1.0000 80 chrIV:15695374-15695454 1.0000 80 chrIV:5011181-5011261 1.0000 80 chrIV:13819757-13819837 1.0000 80 chrIV:15168577-15168657 1.0000 80 chrV:20803618-20803698 1.0000 80 chrII:9787918-9787998 1.0000 80 chrIV:15394853-15394933 1.0000 80 chrIV:16471711-16471791 1.0000 80 chrI:1672425-1672505 1.0000 80 chrIV:16593034-16593114 1.0000 80 chrV:2739730-2739810 1.0000 80 chrX:16099360-16099440 1.0000 80 chrIV:6419383-6419463 1.0000 80 chrIV:14085870-14085950 1.0000 80 chrII:11714885-11714965 1.0000 80 chrIV:6501415-6501495 1.0000 80 chrIV:13795330-13795410 1.0000 80 chrV:381712-381792 1.0000 80 chrIV:14730122-14730202 1.0000 80 chrI:4785655-4785735 1.0000 80 chrIV:14240357-14240437 1.0000 80 chrIV:16209630-16209710 1.0000 80 chrIV:16603764-16603844 1.0000 80 chrIV:15807065-15807145 1.0000 80 chrIV:16033446-16033526 1.0000 80 chrIV:13709200-13709280 1.0000 80 chrV:7888204-7888284 1.0000 80 chrIV:16036210-16036290 1.0000 80 chrIII:5734445-5734525 1.0000 80 chrIV:15649405-15649485 1.0000 80 chrIV:13814711-13814791 1.0000 80 chrV:4794811-4794891 1.0000 80 chrII:8670996-8671076 1.0000 80 chrX:2362941-2363021 1.0000 80 chrV:1455389-1455469 1.0000 80 chrIV:14285807-14285887 1.0000 80 chrIV:15805186-15805266 1.0000 80 chrIV:6529978-6530058 1.0000 80 chrV:2920279-2920359 1.0000 80 chrIV:15934095-15934175 1.0000 80 chrIII:5748451-5748531 1.0000 80 chrIV:14439395-14439475 1.0000 80 chrIV:13602131-13602211 1.0000 80 chrIV:14586898-14586978 1.0000 80 chrIV:14364712-14364792 1.0000 80 chrIV:15234419-15234499 1.0000 80 chrII:7232105-7232185 1.0000 80 chrIV:16216123-16216203 1.0000 80 chrIV:16596665-16596745 1.0000 80 chrI:13859224-13859304 1.0000 80 chrIV:14980330-14980410 1.0000 80 chrV:8014860-8014940 1.0000 80 chrII:13830431-13830511 1.0000 80 chrI:8761207-8761287 1.0000 80 chrIV:14183414-14183494 1.0000 80 chrIV:13601573-13601653 1.0000 80 chrIII:11372560-11372640 1.0000 80 chrIV:14961474-14961554 1.0000 80 chrV:14396259-14396339 1.0000 80 chrII:7171753-7171833 1.0000 80 chrX:16566508-16566588 1.0000 80 chrIV:14836105-14836185 1.0000 80 chrIV:13687800-13687880 1.0000 80 chrII:12647072-12647152 1.0000 80 chrV:17428726-17428806 1.0000 80 chrIV:14668927-14669007 1.0000 80 chrII:13946648-13946728 1.0000 80 chrIV:16570319-16570399 1.0000 80 chrIV:6914485-6914565 1.0000 80 chrIV:5814436-5814516 1.0000 80 chrIV:13825001-13825081 1.0000 80 chrX:2763915-2763995 1.0000 80 chrIV:15662880-15662960 1.0000 80 chrIV:13898303-13898383 1.0000 80 chrIV:5264876-5264956 1.0000 80 chrV:20699055-20699135 1.0000 80 chrIV:13600763-13600843 1.0000 80 chrIV:16600218-16600298 1.0000 80 chrX:16722125-16722205 1.0000 80 chrV:13064336-13064416 1.0000 80 chrX:16565927-16566007 1.0000 80 chrII:2747983-2748063 1.0000 80 chrV:16309228-16309308 1.0000 80 chrV:11391214-11391294 1.0000 80 chrIV:14597543-14597623 1.0000 80 chrIV:15853087-15853167 1.0000 80 chrI:10594196-10594276 1.0000 80 chrIV:479532-479612 1.0000 80 chrIV:14780714-14780794 1.0000 80 chrX:14424379-14424459 1.0000 80 chrIV:16373032-16373112 1.0000 80 chrX:13690454-13690534 1.0000 80 chrV:15982927-15983007 1.0000 80 chrIV:14023149-14023229 1.0000 80 chrX:14324524-14324604 1.0000 80 chrIV:14735046-14735126 1.0000 80 chrIV:5274308-5274388 1.0000 80 chrIV:9464628-9464708 1.0000 80 chrIV:14407440-14407520 1.0000 80 chrIV:14431634-14431714 1.0000 80 chrIV:16136464-16136544 1.0000 80 chrIII:12845678-12845758 1.0000 80 chrIII:11001557-11001637 1.0000 80 chrIV:6792876-6792956 1.0000 80 chrV:5602624-5602704 1.0000 80 chrIV:6565768-6565848 1.0000 80 chrX:15171085-15171165 1.0000 80 chrIV:7253538-7253618 1.0000 80 chrIV:16005616-16005696 1.0000 80 chrIV:15173483-15173563 1.0000 80 chrIV:15880299-15880379 1.0000 80 chrIV:15780923-15781003 1.0000 80 chrII:12968623-12968703 1.0000 80 chrIV:9130825-9130905 1.0000 80 chrIV:16629755-16629835 1.0000 80 chrI:9631067-9631147 1.0000 80 chrIV:14759807-14759887 1.0000 80 chrIV:9001405-9001485 1.0000 80 chrX:4103238-4103318 1.0000 80 chrII:3113447-3113527 1.0000 80 chrIII:6157470-6157550 1.0000 80 chrIV:15978633-15978713 1.0000 80 chrIII:11789640-11789720 1.0000 80 chrIV:15609983-15610063 1.0000 80 chrIV:1260637-1260717 1.0000 80 chrIII:10576447-10576527 1.0000 80 chrIV:14602133-14602213 1.0000 80 chrX:17502354-17502434 1.0000 80 chrIV:14862702-14862782 1.0000 80 chrIV:9140340-9140420 1.0000 80 chrIV:15547624-15547704 1.0000 80 chrIV:13893271-13893351 1.0000 80 chrIV:15604349-15604429 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_snpc-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/snpc-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.28 C 0.22 G 0.217 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.28 C 0.22 G 0.217 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGGCCGC MEME-1 width = 8 sites = 93 llr = 780 E-value = 8.0e-075 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGGCCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:1::3 pos.-specific C :a1:87:7 probability G 3:8a11a: matrix T 7::::2:: bits 2.2 * * * 2.0 * * * 1.8 * * * 1.5 * * * Relative 1.3 *** * Entropy 1.1 ***** ** (12.1 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGGCCGC consensus G T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17502354-17502434 32 6.80e-06 CCGAAATATG TCGGCCGC TGTGTCTTTT chrII:3113447-3113527 52 6.80e-06 ctgaaaagtg tcggccgc ggcgagagaa chrX:4103238-4103318 25 6.80e-06 cctgaaaatg tcggccgc tgccaaataa chrX:14424379-14424459 58 6.80e-06 TCGGAAATTG TCGGCCGC CGTGAAAACA chrV:13064336-13064416 38 6.80e-06 tcaaaaggtg tcggccgc tgcgaaaata chrX:2362941-2363021 64 6.80e-06 CCGTGAAGTG TCGGCCGC GGCGGAAGT chrII:8670996-8671076 43 6.80e-06 TCGCGAAACG TCGGCCGC TGGATAAAAA chrI:1672425-1672505 47 6.80e-06 cccgaatgtg tcggccgc tctaggcaac chrV:20803618-20803698 63 6.80e-06 cccgaccgtg tcggccgc ttccaaataa chrIV:16535030-16535110 44 6.80e-06 TCACGAAACG TCGGCCGC AGTTCAAATA chrII:14010817-14010897 29 6.80e-06 CTGGAGAGTG TCGGCCGC TATCTTGCAT chrII:15019950-15020030 36 6.80e-06 CCGTGAGATG TCGGCCGC TGTAACTATT chrX:872103-872183 61 6.80e-06 ccaagaagtg tcggccgc ggcggaagaa chrI:4389350-4389430 53 6.80e-06 CTGGTAACTG TCGGCCGC CATATTTTTT chrIV:15868442-15868522 52 6.80e-06 CCGCACTGCG TCGGCCGC TGCGTCGGCC chrX:16157691-16157771 26 6.80e-06 CCGCGTAGCG TCGGCCGC AGTACACAGT chrIV:13695469-13695549 71 6.80e-06 CTGTTAGACG TCGGCCGC AC chrIII:12848338-12848418 46 6.80e-06 CCGCTAGATG TCGGCCGC AAACTATGCG chrX:16566508-16566588 49 1.20e-05 CGAGGTGTCG GCGGCCGC CGAACACCTA chrIV:13893271-13893351 32 2.94e-05 CCGGGAAGCG TCGGCTGC AACACACAGA chrIV:6565768-6565848 58 2.94e-05 CCGTGAAATG TCGGCTGC CAAATCTGAC chrIII:11001557-11001637 52 2.94e-05 CCGAAAAGAG TCGGCTGC TTTTCAATGG chrV:16309228-16309308 54 2.94e-05 tcgatcgatg tcggctgc gcattCTTTT chrX:2763915-2763995 68 2.94e-05 tcggaaagtg tcggctgc ggcaa chrII:12647072-12647152 60 2.94e-05 CCGTATAGTG TCGGCTGC TTGAGCTCTA chrII:7232105-7232185 35 2.94e-05 CTGATTGTCA TCGGCTGC TTTATTGTTT chrIV:13709200-13709280 25 2.94e-05 CTGGTTTTCG TCGGCTGC AAGTTTTCAT chrV:14362150-14362230 51 2.94e-05 TCATTTTTTG TCGGCTGC AGATTATTGA chrII:11842948-11843028 45 2.94e-05 TCGTAATGCG TCGGCTGC AAACAATCCT chrV:7595297-7595377 37 2.94e-05 CGGTGAGATG TCGGCTGC TTCGATAAAC chrX:15345519-15345599 34 2.94e-05 ccgaaaggtg tcggctgc ggcgaaaaac chrIV:16028649-16028729 35 2.94e-05 TCGATCGATG TCGGCTGC GTTTTTTTTT chrX:16309884-16309964 41 2.94e-05 ccaaaaagtg tcggctgc gtcgagagaa chrV:37424-37504 24 2.94e-05 CTGTGATGAG TCGGCTGC CAATTTGTGT chrII:13665110-13665190 64 2.94e-05 CTGCGAAATG TCGGCTGC ACTAATAGT chrIV:1260637-1260717 31 3.60e-05 TACTTCCGCC GCGGCCGA CACTTCGCGG chrIII:11789640-11789720 47 3.60e-05 GGTTTCCACG GCGGCCGA CAGTTTCCGA chrIII:12845678-12845758 42 3.60e-05 CGCGTAGTTT GCGGCCGA CATCTCACTG chrII:2747983-2748063 3 3.60e-05 CA GCGGCCGA CTCCTTGTCG chrV:14396259-14396339 38 3.60e-05 GGTTTCCACG GCGGCCGA CAATTTCCGA chrV:2920279-2920359 29 3.60e-05 ttctttcgtt gcggccga catttttcgg chrV:1455389-1455469 48 3.60e-05 ttttttagaa gcggccga cacgttcggg chrV:7888204-7888284 26 3.60e-05 ATTGATAGAA GCGGCCGA CCGAAACTGT chrIV:15394853-15394933 47 3.60e-05 TTTGTTGTCT GCGGCCGA CAAAAACCGG chrII:9787918-9787998 39 3.60e-05 AAACAATTTA GCGGCCGA CAGTTTTTCG chrIV:14377409-14377489 60 3.60e-05 GGTTTCCACG GCGGCCGA CAACTTCCGA chrIV:14932721-14932801 26 3.60e-05 GGTTTCTACG GCGGCCGA CAATTTCCGA chrX:2960849-2960929 47 3.60e-05 gttttttgcc gcggccga cacttttcgg chrX:15388475-15388555 50 3.60e-05 ttgtttggaa gcggccga cacgttcggg chrX:14657567-14657647 12 3.60e-05 GTTTCTCACG GCGGCCGA CAATTTCCGA chrX:15171085-15171165 73 5.82e-05 ccaaccaatg tcagccgc chrV:5602624-5602704 28 5.82e-05 ccgcaggatg tcggcggc ctgatattgg chrX:16565927-16566007 27 5.82e-05 TCGCGAGGTG TCGGCGGC CACCAAACAC chrIV:6914485-6914565 66 5.82e-05 aaccagtagg tcggcggc ctgatat chrIV:16209630-16209710 46 5.82e-05 TCGGAAATTG TCAGCCGC CGTGGAAACC chrIV:14240357-14240437 29 5.82e-05 ccgtaggatg tcggcggc ctgatattgg chrV:7062971-7063051 50 5.82e-05 ccgtaggatg tcggcggc ctgatattgg chrIV:5309295-5309375 55 5.82e-05 ccgtaggatg tcggcggc ctgatattgg chrX:15222932-15223012 31 5.82e-05 ccgaaaagtg tcagccgc gtcgaaagaa chrI:4785655-4785735 25 7.80e-05 TGCGTCCGGT TCGGACGC AGTGCGTCCG chrIV:16474527-16474607 60 7.80e-05 CCGTAAAGTG TCGGACGC TGCAGAACAG chrIV:6792876-6792956 52 8.49e-05 ACGCTTTTTG TCCGCCGC CACCGTGTGC chrI:13859224-13859304 37 8.49e-05 CGCGAAGCCG TCCGCCGC TCAAATTGCG chrIV:16307104-16307184 38 8.49e-05 cgacggcgcc tccgccgc gccgctctca chrIV:14862702-14862782 20 9.16e-05 CCGGTAGGTG TCGGGCGC TGCGAAGTCT chrIV:14597543-14597623 20 9.16e-05 CCCTTAATTG TCGGGCGC TGGAAATTTT chrIV:16917496-16917576 52 9.16e-05 CTGCTAGATG TCGGGCGC TGCGATTTTT chrIV:16471711-16471791 70 1.12e-04 GTCCTTAAAC TCGgcagc gga chrIV:15717685-15717765 44 1.12e-04 ccgtgaaatg tcggcagc gtgatgttgg chrIV:14335958-14336038 20 1.12e-04 TTGCTATCAA TCGGCAGC AAGCGGCGGG chrIII:11372560-11372640 11 1.27e-04 TTATTCAGCA GCGGACGC TTAATAGGTT chrII:12968623-12968703 71 1.61e-04 CTGTGCGGTG TCGGTCGC CG chrV:15982927-15983007 45 1.61e-04 CCGGAGACTG TCGGTCGC TTGCAAGGCA chrIV:15825117-15825197 66 1.61e-04 CCGGCAGATG TCGGTCGC ATCAAAT chrX:16337127-16337207 8 1.61e-04 GAAATTG TCGGTCGC CGTGGAAACC chrI:8761207-8761287 22 1.88e-04 TGCGTCCGGT TCGGACGA CCGGACGTCC chrIV:15234419-15234499 39 1.88e-04 GGTGTTAAAA TCGGACGA CCGGACGCCG chrIV:5950085-5950165 62 1.88e-04 TGCGTCCGGT TCGGACGA CCGGACGTCC chrII:13830431-13830511 40 2.45e-04 ATAATAACCT GCAGCCGA CATTTTTCGA chrIII:5748451-5748531 36 2.45e-04 ATAACCGCCC GCAGCCGA CAAAAAACGA chrI:13317125-13317205 27 2.45e-04 TTTGGAATGT GCAGCCGA CATTGTTCCA chrIV:588818-588898 22 2.45e-04 TTTGTGGTTT GCAGCCGA CATCGATCGG chrII:14945694-14945774 67 2.45e-04 CCATGATGTG TCGGATGC GGTAAA chrII:6990054-6990134 15 2.45e-04 CTTTTTTTCA GCAGCCGA CACATGCCGG chrIV:15283742-15283822 32 2.45e-04 CCGGCAGATG TCGGATGC TGTGAAATTA chrII:12948409-12948489 23 2.45e-04 CGCTTGCCTG GCAGCCGA CATTTCGCGG chrIV:14444258-14444338 28 2.45e-04 TGGTGGGGTG GCAGCCGA CACATCAAGG chrV:4794811-4794891 45 2.74e-04 CCGTTAGATG TCGGGTGC GAGTTTTTTT chrIV:15609983-15610063 30 3.17e-04 ccaatatctg gccgccga catcctactg chrV:20699055-20699135 16 3.17e-04 ccaatatcag gccgccga catcctacgg chrX:14680633-14680713 72 3.17e-04 ccgtaagatg tcagcggc c chrX:14324524-14324604 31 3.24e-04 GTGTTTGTCG GCGGGCGA CACCTCGCGG chrIV:6662815-6662895 38 6.13e-04 tctcacggct tccgcagc ccgctatgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17502354-17502434 6.8e-06 31_[+1]_41 chrII:3113447-3113527 6.8e-06 51_[+1]_21 chrX:4103238-4103318 6.8e-06 24_[+1]_48 chrX:14424379-14424459 6.8e-06 57_[+1]_15 chrV:13064336-13064416 6.8e-06 37_[+1]_35 chrX:2362941-2363021 6.8e-06 63_[+1]_9 chrII:8670996-8671076 6.8e-06 42_[+1]_30 chrI:1672425-1672505 6.8e-06 46_[+1]_26 chrV:20803618-20803698 6.8e-06 62_[+1]_10 chrIV:16535030-16535110 6.8e-06 43_[+1]_29 chrII:14010817-14010897 6.8e-06 28_[+1]_44 chrII:15019950-15020030 6.8e-06 35_[+1]_37 chrX:872103-872183 6.8e-06 60_[+1]_12 chrI:4389350-4389430 6.8e-06 52_[+1]_20 chrIV:15868442-15868522 6.8e-06 51_[+1]_21 chrX:16157691-16157771 6.8e-06 25_[+1]_47 chrIV:13695469-13695549 6.8e-06 70_[+1]_2 chrIII:12848338-12848418 6.8e-06 45_[+1]_27 chrX:16566508-16566588 1.2e-05 48_[+1]_24 chrIV:13893271-13893351 2.9e-05 31_[+1]_41 chrIV:6565768-6565848 2.9e-05 57_[+1]_15 chrIII:11001557-11001637 2.9e-05 51_[+1]_21 chrV:16309228-16309308 2.9e-05 53_[+1]_19 chrX:2763915-2763995 2.9e-05 67_[+1]_5 chrII:12647072-12647152 2.9e-05 59_[+1]_13 chrII:7232105-7232185 2.9e-05 34_[+1]_38 chrIV:13709200-13709280 2.9e-05 24_[+1]_48 chrV:14362150-14362230 2.9e-05 50_[+1]_22 chrII:11842948-11843028 2.9e-05 44_[+1]_28 chrV:7595297-7595377 2.9e-05 36_[+1]_36 chrX:15345519-15345599 2.9e-05 33_[+1]_39 chrIV:16028649-16028729 2.9e-05 34_[+1]_38 chrX:16309884-16309964 2.9e-05 40_[+1]_32 chrV:37424-37504 2.9e-05 23_[+1]_49 chrII:13665110-13665190 2.9e-05 63_[+1]_9 chrIV:1260637-1260717 3.6e-05 30_[+1]_42 chrIII:11789640-11789720 3.6e-05 46_[+1]_26 chrIII:12845678-12845758 3.6e-05 41_[+1]_31 chrII:2747983-2748063 3.6e-05 2_[+1]_70 chrV:14396259-14396339 3.6e-05 37_[+1]_35 chrV:2920279-2920359 3.6e-05 28_[+1]_44 chrV:1455389-1455469 3.6e-05 47_[+1]_25 chrV:7888204-7888284 3.6e-05 25_[+1]_47 chrIV:15394853-15394933 3.6e-05 46_[+1]_26 chrII:9787918-9787998 3.6e-05 38_[+1]_34 chrIV:14377409-14377489 3.6e-05 59_[+1]_13 chrIV:14932721-14932801 3.6e-05 25_[+1]_47 chrX:2960849-2960929 3.6e-05 46_[+1]_26 chrX:15388475-15388555 3.6e-05 49_[+1]_23 chrX:14657567-14657647 3.6e-05 11_[+1]_61 chrX:15171085-15171165 5.8e-05 72_[+1] chrV:5602624-5602704 5.8e-05 27_[+1]_45 chrX:16565927-16566007 5.8e-05 26_[+1]_46 chrIV:6914485-6914565 5.8e-05 65_[+1]_7 chrIV:16209630-16209710 5.8e-05 45_[+1]_27 chrIV:14240357-14240437 5.8e-05 28_[+1]_44 chrV:7062971-7063051 5.8e-05 49_[+1]_23 chrIV:5309295-5309375 5.8e-05 54_[+1]_18 chrX:15222932-15223012 5.8e-05 30_[+1]_42 chrI:4785655-4785735 7.8e-05 24_[+1]_48 chrIV:16474527-16474607 7.8e-05 59_[+1]_13 chrIV:6792876-6792956 8.5e-05 51_[+1]_21 chrI:13859224-13859304 8.5e-05 36_[+1]_36 chrIV:16307104-16307184 8.5e-05 37_[+1]_35 chrIV:14862702-14862782 9.2e-05 19_[+1]_53 chrIV:14597543-14597623 9.2e-05 19_[+1]_53 chrIV:16917496-16917576 9.2e-05 51_[+1]_21 chrIV:16471711-16471791 0.00011 69_[+1]_3 chrIV:15717685-15717765 0.00011 43_[+1]_29 chrIV:14335958-14336038 0.00011 19_[+1]_53 chrIII:11372560-11372640 0.00013 10_[+1]_62 chrII:12968623-12968703 0.00016 70_[+1]_2 chrV:15982927-15983007 0.00016 44_[+1]_28 chrIV:15825117-15825197 0.00016 65_[+1]_7 chrX:16337127-16337207 0.00016 7_[+1]_65 chrI:8761207-8761287 0.00019 21_[+1]_51 chrIV:15234419-15234499 0.00019 38_[+1]_34 chrIV:5950085-5950165 0.00019 61_[+1]_11 chrII:13830431-13830511 0.00025 39_[+1]_33 chrIII:5748451-5748531 0.00025 35_[+1]_37 chrI:13317125-13317205 0.00025 26_[+1]_46 chrIV:588818-588898 0.00025 21_[+1]_51 chrII:14945694-14945774 0.00025 66_[+1]_6 chrII:6990054-6990134 0.00025 14_[+1]_58 chrIV:15283742-15283822 0.00025 31_[+1]_41 chrII:12948409-12948489 0.00025 22_[+1]_50 chrIV:14444258-14444338 0.00025 27_[+1]_45 chrV:4794811-4794891 0.00027 44_[+1]_28 chrIV:15609983-15610063 0.00032 29_[+1]_43 chrV:20699055-20699135 0.00032 15_[+1]_57 chrX:14680633-14680713 0.00032 71_[+1]_1 chrX:14324524-14324604 0.00032 30_[+1]_42 chrIV:6662815-6662895 0.00061 37_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGGCCGC width=8 seqs=93 chrX:17502354-17502434 ( 32) TCGGCCGC 1 chrII:3113447-3113527 ( 52) TCGGCCGC 1 chrX:4103238-4103318 ( 25) TCGGCCGC 1 chrX:14424379-14424459 ( 58) TCGGCCGC 1 chrV:13064336-13064416 ( 38) TCGGCCGC 1 chrX:2362941-2363021 ( 64) TCGGCCGC 1 chrII:8670996-8671076 ( 43) TCGGCCGC 1 chrI:1672425-1672505 ( 47) TCGGCCGC 1 chrV:20803618-20803698 ( 63) TCGGCCGC 1 chrIV:16535030-16535110 ( 44) TCGGCCGC 1 chrII:14010817-14010897 ( 29) TCGGCCGC 1 chrII:15019950-15020030 ( 36) TCGGCCGC 1 chrX:872103-872183 ( 61) TCGGCCGC 1 chrI:4389350-4389430 ( 53) TCGGCCGC 1 chrIV:15868442-15868522 ( 52) TCGGCCGC 1 chrX:16157691-16157771 ( 26) TCGGCCGC 1 chrIV:13695469-13695549 ( 71) TCGGCCGC 1 chrIII:12848338-12848418 ( 46) TCGGCCGC 1 chrX:16566508-16566588 ( 49) GCGGCCGC 1 chrIV:13893271-13893351 ( 32) TCGGCTGC 1 chrIV:6565768-6565848 ( 58) TCGGCTGC 1 chrIII:11001557-11001637 ( 52) TCGGCTGC 1 chrV:16309228-16309308 ( 54) TCGGCTGC 1 chrX:2763915-2763995 ( 68) TCGGCTGC 1 chrII:12647072-12647152 ( 60) TCGGCTGC 1 chrII:7232105-7232185 ( 35) TCGGCTGC 1 chrIV:13709200-13709280 ( 25) TCGGCTGC 1 chrV:14362150-14362230 ( 51) TCGGCTGC 1 chrII:11842948-11843028 ( 45) TCGGCTGC 1 chrV:7595297-7595377 ( 37) TCGGCTGC 1 chrX:15345519-15345599 ( 34) TCGGCTGC 1 chrIV:16028649-16028729 ( 35) TCGGCTGC 1 chrX:16309884-16309964 ( 41) TCGGCTGC 1 chrV:37424-37504 ( 24) TCGGCTGC 1 chrII:13665110-13665190 ( 64) TCGGCTGC 1 chrIV:1260637-1260717 ( 31) GCGGCCGA 1 chrIII:11789640-11789720 ( 47) GCGGCCGA 1 chrIII:12845678-12845758 ( 42) GCGGCCGA 1 chrII:2747983-2748063 ( 3) GCGGCCGA 1 chrV:14396259-14396339 ( 38) GCGGCCGA 1 chrV:2920279-2920359 ( 29) GCGGCCGA 1 chrV:1455389-1455469 ( 48) GCGGCCGA 1 chrV:7888204-7888284 ( 26) GCGGCCGA 1 chrIV:15394853-15394933 ( 47) GCGGCCGA 1 chrII:9787918-9787998 ( 39) GCGGCCGA 1 chrIV:14377409-14377489 ( 60) GCGGCCGA 1 chrIV:14932721-14932801 ( 26) GCGGCCGA 1 chrX:2960849-2960929 ( 47) GCGGCCGA 1 chrX:15388475-15388555 ( 50) GCGGCCGA 1 chrX:14657567-14657647 ( 12) GCGGCCGA 1 chrX:15171085-15171165 ( 73) TCAGCCGC 1 chrV:5602624-5602704 ( 28) TCGGCGGC 1 chrX:16565927-16566007 ( 27) TCGGCGGC 1 chrIV:6914485-6914565 ( 66) TCGGCGGC 1 chrIV:16209630-16209710 ( 46) TCAGCCGC 1 chrIV:14240357-14240437 ( 29) TCGGCGGC 1 chrV:7062971-7063051 ( 50) TCGGCGGC 1 chrIV:5309295-5309375 ( 55) TCGGCGGC 1 chrX:15222932-15223012 ( 31) TCAGCCGC 1 chrI:4785655-4785735 ( 25) TCGGACGC 1 chrIV:16474527-16474607 ( 60) TCGGACGC 1 chrIV:6792876-6792956 ( 52) TCCGCCGC 1 chrI:13859224-13859304 ( 37) TCCGCCGC 1 chrIV:16307104-16307184 ( 38) TCCGCCGC 1 chrIV:14862702-14862782 ( 20) TCGGGCGC 1 chrIV:14597543-14597623 ( 20) TCGGGCGC 1 chrIV:16917496-16917576 ( 52) TCGGGCGC 1 chrIV:16471711-16471791 ( 70) TCGGCAGC 1 chrIV:15717685-15717765 ( 44) TCGGCAGC 1 chrIV:14335958-14336038 ( 20) TCGGCAGC 1 chrIII:11372560-11372640 ( 11) GCGGACGC 1 chrII:12968623-12968703 ( 71) TCGGTCGC 1 chrV:15982927-15983007 ( 45) TCGGTCGC 1 chrIV:15825117-15825197 ( 66) TCGGTCGC 1 chrX:16337127-16337207 ( 8) TCGGTCGC 1 chrI:8761207-8761287 ( 22) TCGGACGA 1 chrIV:15234419-15234499 ( 39) TCGGACGA 1 chrIV:5950085-5950165 ( 62) TCGGACGA 1 chrII:13830431-13830511 ( 40) GCAGCCGA 1 chrIII:5748451-5748531 ( 36) GCAGCCGA 1 chrI:13317125-13317205 ( 27) GCAGCCGA 1 chrIV:588818-588898 ( 22) GCAGCCGA 1 chrII:14945694-14945774 ( 67) TCGGATGC 1 chrII:6990054-6990134 ( 15) GCAGCCGA 1 chrIV:15283742-15283822 ( 32) TCGGATGC 1 chrII:12948409-12948489 ( 23) GCAGCCGA 1 chrIV:14444258-14444338 ( 28) GCAGCCGA 1 chrV:4794811-4794891 ( 45) TCGGGTGC 1 chrIV:15609983-15610063 ( 30) GCCGCCGA 1 chrV:20699055-20699135 ( 16) GCCGCCGA 1 chrX:14680633-14680713 ( 72) TCAGCGGC 1 chrX:14324524-14324604 ( 31) GCGGGCGA 1 chrIV:6662815-6662895 ( 38) TCCGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18043 E= 8.0e-075 -1318 -1318 42 132 -1318 218 -1318 -1318 -124 -177 191 -1318 -1318 -1318 221 -1318 -170 189 -201 -272 -270 162 -153 -47 -1318 -1318 221 -1318 11 167 -1318 -1318 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 8.0e-075 0.000000 0.000000 0.290323 0.709677 0.000000 1.000000 0.000000 0.000000 0.118280 0.064516 0.817204 0.000000 0.000000 0.000000 1.000000 0.000000 0.086022 0.817204 0.053763 0.043011 0.043011 0.677419 0.075269 0.204301 0.000000 0.000000 1.000000 0.000000 0.301075 0.698925 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCCGC MEME-1 regular expression -------------------------------------------------------------------------------- [TG]CGGC[CT]G[CA] -------------------------------------------------------------------------------- Time 5.51 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGAACC MEME-2 width = 8 sites = 43 llr = 431 E-value = 1.2e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGAACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::2aa:: pos.-specific C :a::::a8 probability G a:a8:::: matrix T :::::::2 bits 2.2 * 2.0 *** 1.8 *** *** 1.5 *** *** Relative 1.3 ******** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGAACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:3113447-3113527 35 8.53e-06 atagtgcggc gcggaacc tgaaaagtgt chrV:5602624-5602704 11 8.53e-06 atagcggcgc gcggaacc cgcaggatgt chrI:10594196-10594276 63 8.53e-06 atagcggtgc gcggaacc catgagatgt chrIV:6914485-6914565 52 8.53e-06 aaagcggcgc gcggaacc agtaggtcgg chrX:16566508-16566588 29 8.53e-06 ACAGCGGTGT GCGGAACC CGCGAGGTGT chrII:7171753-7171833 29 8.53e-06 ACGCAGCAAA GCGGAACC CTCAGGATGT chrI:13859224-13859304 19 8.53e-06 ATGGTGATTG GCGGAACC CGCGAAGCCG chrII:7232105-7232185 17 8.53e-06 CCCGTGAATG GCGGAACC CTGATTGTCA chrIV:14240357-14240437 12 8.53e-06 atagcggtgc gcggaacc cgtaggatgt chrII:11714885-11714965 73 8.53e-06 GATATGCCGC GCGGAACC chrV:2739730-2739810 71 8.53e-06 atagtgcggc gcggaacc cg chrIV:16593034-16593114 66 8.53e-06 ATAACGAGTC GCGGAACC CGTGGGT chrI:1672425-1672505 30 8.53e-06 atagtgaggt gcggaacc ccgaatgtgt chrV:20803618-20803698 46 8.53e-06 atagtgtggc gcggaacc ccgaccgtgt chrIV:15717685-15717765 27 8.53e-06 gtagcggcgc gcggaacc cgtgaaatgt chrV:7062971-7063051 33 8.53e-06 atagcggcgc gcggaacc cgtaggatgt chrIV:16474527-16474607 43 8.53e-06 CCGCTGTGTG GCGGAACC CGTAAAGTGT chrIV:5309295-5309375 38 8.53e-06 atagcggcgc gcggaacc cgtaggatgt chrX:872103-872183 44 8.53e-06 gtagtgtggc gcggaacc caagaagtgt chrI:4389350-4389430 36 8.53e-06 ATGCTGATTC GCGGAACC TGGTAACTGT chrIV:15950110-15950190 67 8.53e-06 gtagtggcgc gcggaacc cgtcaa chrX:15345519-15345599 17 8.53e-06 atagtgcagc gcggaacc cgaaaggtgt chrX:14637581-14637661 72 8.53e-06 atagcggcgc gcggaacc c chrIV:14307761-14307841 60 8.53e-06 atagcggcgc gcggaacc cgtaggatgt chrX:16309884-16309964 24 8.53e-06 atagtgcggc gcggaacc caaaaagtgt chrX:14680633-14680713 55 8.53e-06 acagtggcgc gcggaacc cgtaagatgt chrX:16565927-16566007 10 1.95e-05 CAGCGGTGC GCGGAACT CGCGAGGTGT chrV:13064336-13064416 21 1.95e-05 tgtagtgcgc gcggaact caaaaggtgt chrX:2763915-2763995 51 1.95e-05 gtagcgcggc gcggaact cggaaagtgt chrIV:14586898-14586978 36 1.95e-05 ATGACAAGTC GCGGAACT CAGAAAATGT chrIV:13600763-13600843 23 3.05e-05 ATAGTGACTT GCGAAACC CGCCATGTGC chrIV:16917496-16917576 35 3.05e-05 CTGGAGGCCT GCGAAACC TGCTAGATGT chrII:12383169-12383249 20 3.05e-05 ATAGATGTTC GCGAAACC CGTAAAATGA chrV:9392123-9392203 25 4.17e-05 ATAGTGGAAC GCGTAACC CGGGAGACGT chrIV:13695469-13695549 54 4.17e-05 ACTTATCAGG GCGTAACC TGTTAGACGT chrIII:10576447-10576527 61 6.43e-05 ATAGTGAGTG GCGAAACT CGGAAATTGT chrIV:14780714-14780794 63 6.43e-05 ATAGTGAGTG GCGAAACT CGGAAATTGT chrX:2362941-2363021 47 6.43e-05 ATAGCGTGAC GCGGAAGC CGTGAAGTGT chrIV:5011181-5011261 61 6.43e-05 ATAGTGAGTG GCGAAACT CGGAAATTGT chrIV:16535030-16535110 27 6.43e-05 TTGAATTATG GCGAAACT CACGAAACGT chrX:4103238-4103318 8 7.53e-05 gtgcagc gcggaatc ctgaaaatgt chrIV:9001405-9001485 4 9.72e-05 GCA GAGGAACC AGAGTTAATT chrX:15222932-15223012 14 9.72e-05 atagtgcggc acggaacc cgaaaagtgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:3113447-3113527 8.5e-06 34_[+2]_38 chrV:5602624-5602704 8.5e-06 10_[+2]_62 chrI:10594196-10594276 8.5e-06 62_[+2]_10 chrIV:6914485-6914565 8.5e-06 51_[+2]_21 chrX:16566508-16566588 8.5e-06 28_[+2]_44 chrII:7171753-7171833 8.5e-06 28_[+2]_44 chrI:13859224-13859304 8.5e-06 18_[+2]_54 chrII:7232105-7232185 8.5e-06 16_[+2]_56 chrIV:14240357-14240437 8.5e-06 11_[+2]_61 chrII:11714885-11714965 8.5e-06 72_[+2] chrV:2739730-2739810 8.5e-06 70_[+2]_2 chrIV:16593034-16593114 8.5e-06 65_[+2]_7 chrI:1672425-1672505 8.5e-06 29_[+2]_43 chrV:20803618-20803698 8.5e-06 45_[+2]_27 chrIV:15717685-15717765 8.5e-06 26_[+2]_46 chrV:7062971-7063051 8.5e-06 32_[+2]_40 chrIV:16474527-16474607 8.5e-06 42_[+2]_30 chrIV:5309295-5309375 8.5e-06 37_[+2]_35 chrX:872103-872183 8.5e-06 43_[+2]_29 chrI:4389350-4389430 8.5e-06 35_[+2]_37 chrIV:15950110-15950190 8.5e-06 66_[+2]_6 chrX:15345519-15345599 8.5e-06 16_[+2]_56 chrX:14637581-14637661 8.5e-06 71_[+2]_1 chrIV:14307761-14307841 8.5e-06 59_[+2]_13 chrX:16309884-16309964 8.5e-06 23_[+2]_49 chrX:14680633-14680713 8.5e-06 54_[+2]_18 chrX:16565927-16566007 2e-05 9_[+2]_63 chrV:13064336-13064416 2e-05 20_[+2]_52 chrX:2763915-2763995 2e-05 50_[+2]_22 chrIV:14586898-14586978 2e-05 35_[+2]_37 chrIV:13600763-13600843 3.1e-05 22_[+2]_50 chrIV:16917496-16917576 3.1e-05 34_[+2]_38 chrII:12383169-12383249 3.1e-05 19_[+2]_53 chrV:9392123-9392203 4.2e-05 24_[+2]_48 chrIV:13695469-13695549 4.2e-05 53_[+2]_19 chrIII:10576447-10576527 6.4e-05 60_[+2]_12 chrIV:14780714-14780794 6.4e-05 62_[+2]_10 chrX:2362941-2363021 6.4e-05 46_[+2]_26 chrIV:5011181-5011261 6.4e-05 60_[+2]_12 chrIV:16535030-16535110 6.4e-05 26_[+2]_46 chrX:4103238-4103318 7.5e-05 7_[+2]_65 chrIV:9001405-9001485 9.7e-05 3_[+2]_69 chrX:15222932-15223012 9.7e-05 13_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGAACC width=8 seqs=43 chrII:3113447-3113527 ( 35) GCGGAACC 1 chrV:5602624-5602704 ( 11) GCGGAACC 1 chrI:10594196-10594276 ( 63) GCGGAACC 1 chrIV:6914485-6914565 ( 52) GCGGAACC 1 chrX:16566508-16566588 ( 29) GCGGAACC 1 chrII:7171753-7171833 ( 29) GCGGAACC 1 chrI:13859224-13859304 ( 19) GCGGAACC 1 chrII:7232105-7232185 ( 17) GCGGAACC 1 chrIV:14240357-14240437 ( 12) GCGGAACC 1 chrII:11714885-11714965 ( 73) GCGGAACC 1 chrV:2739730-2739810 ( 71) GCGGAACC 1 chrIV:16593034-16593114 ( 66) GCGGAACC 1 chrI:1672425-1672505 ( 30) GCGGAACC 1 chrV:20803618-20803698 ( 46) GCGGAACC 1 chrIV:15717685-15717765 ( 27) GCGGAACC 1 chrV:7062971-7063051 ( 33) GCGGAACC 1 chrIV:16474527-16474607 ( 43) GCGGAACC 1 chrIV:5309295-5309375 ( 38) GCGGAACC 1 chrX:872103-872183 ( 44) GCGGAACC 1 chrI:4389350-4389430 ( 36) GCGGAACC 1 chrIV:15950110-15950190 ( 67) GCGGAACC 1 chrX:15345519-15345599 ( 17) GCGGAACC 1 chrX:14637581-14637661 ( 72) GCGGAACC 1 chrIV:14307761-14307841 ( 60) GCGGAACC 1 chrX:16309884-16309964 ( 24) GCGGAACC 1 chrX:14680633-14680713 ( 55) GCGGAACC 1 chrX:16565927-16566007 ( 10) GCGGAACT 1 chrV:13064336-13064416 ( 21) GCGGAACT 1 chrX:2763915-2763995 ( 51) GCGGAACT 1 chrIV:14586898-14586978 ( 36) GCGGAACT 1 chrIV:13600763-13600843 ( 23) GCGAAACC 1 chrIV:16917496-16917576 ( 35) GCGAAACC 1 chrII:12383169-12383249 ( 20) GCGAAACC 1 chrV:9392123-9392203 ( 25) GCGTAACC 1 chrIV:13695469-13695549 ( 54) GCGTAACC 1 chrIII:10576447-10576527 ( 61) GCGAAACT 1 chrIV:14780714-14780794 ( 63) GCGAAACT 1 chrX:2362941-2363021 ( 47) GCGGAAGC 1 chrIV:5011181-5011261 ( 61) GCGAAACT 1 chrIV:16535030-16535110 ( 27) GCGAAACT 1 chrX:4103238-4103318 ( 8) GCGGAATC 1 chrIV:9001405-9001485 ( 4) GAGGAACC 1 chrX:15222932-15223012 ( 14) ACGGAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.05698 E= 1.2e-042 -358 -1207 217 -1207 -358 215 -1207 -1207 -1207 -1207 221 -1207 -78 -1207 187 -261 184 -1207 -1207 -1207 184 -1207 -1207 -1207 -1207 212 -322 -360 -1207 189 -1207 -61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.2e-042 0.023256 0.000000 0.976744 0.000000 0.023256 0.976744 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.162791 0.000000 0.790698 0.046512 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.953488 0.023256 0.023256 0.000000 0.813953 0.000000 0.186047 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGAACC MEME-2 regular expression -------------------------------------------------------------------------------- GCGGAACC -------------------------------------------------------------------------------- Time 9.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTTCCGC MEME-3 width = 8 sites = 28 llr = 291 E-value = 8.2e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTCCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C :::18a:a probability G aa::::a: matrix T ::a91::: bits 2.2 * *** 2.0 ** *** 1.8 ** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTTCCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:15609983-15610063 47 8.78e-06 acatcctact ggttccgc gcgccgctat chrV:11391214-11391294 56 8.78e-06 ACATCTGGTG GGTTCCGC CAGTGTGCAT chrV:20699055-20699135 33 8.78e-06 acatcctacg ggttccgc gcgccgctat chrV:8014860-8014940 6 8.78e-06 ctacg ggttccgc gcgccgctat chrV:1455389-1455469 65 8.78e-06 acacgttcgg ggttccgc gccgcact chrIV:15649405-15649485 12 8.78e-06 ACAACCCACG GGTTCCGC GCCTCGTTAT chrIV:6501415-6501495 12 8.78e-06 acatctcatg ggttccgc gcgccgctat chrII:11714885-11714965 14 8.78e-06 ACGTTTCCCG GGTTCCGC GCGCTTCTGC chrX:16099360-16099440 53 8.78e-06 acacttccgg ggttccgc cggcctcacg chrII:9787918-9787998 57 8.78e-06 CAGTTTTTCG GGTTCCGC CACACACCGT chrIV:6460787-6460867 27 8.78e-06 ACACCTTGTG GGTTCCGC ATGTGATTGT chrX:2960849-2960929 64 8.78e-06 acacttttcg ggttccgc gccgcacta chrIV:16474527-16474607 29 8.78e-06 ACAACAAACG GGTTCCGC TGTGTGGCGG chrIV:15119478-15119558 8 8.78e-06 cgttcgg ggttccgc gtcgcactat chrIV:15410586-15410666 34 8.78e-06 acactttttg ggttccgc ccatcgctat chrIV:15120903-15120983 5 8.78e-06 tcgg ggttccgc agcttggcgt chrX:16341957-16342037 8 8.78e-06 tctcacg ggttccgc gcgccgctat chrIV:14444258-14444338 45 8.78e-06 ACACATCAAG GGTTCCGC CAAGCAACTC chrIV:9001405-9001485 71 2.01e-05 ATACCTTGCG GGTTTCGC CC chrII:12968623-12968703 25 2.01e-05 ACACCTGACA GGTTTCGC CATTTGCACC chrIV:9464628-9464708 65 2.01e-05 ACATTCTGCG GGTTTCGC CAACGGTT chrIV:14562797-14562877 44 2.01e-05 ACATCTTTCG GGTTTCGC CACTCATCTT chrIV:15868442-15868522 38 2.69e-05 AGTACCGCGC GGTCCCGC ACTGCGTCGG chrX:16157691-16157771 12 2.69e-05 GGCGCGAGGT GGTCCCGC GTAGCGTCGG chrV:2920279-2920359 46 3.81e-05 acatttttcg ggttacgc gccgcactgt chrX:15388475-15388555 67 3.81e-05 acacgttcgg ggttacgc gccgca chrIV:16808740-16808820 11 4.49e-05 ctaatattta ggctccgc ctatttctcg chrIV:15435555-15435635 7 5.64e-05 cctacg tgttccgc gcgccgctat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:15609983-15610063 8.8e-06 46_[+3]_26 chrV:11391214-11391294 8.8e-06 55_[+3]_17 chrV:20699055-20699135 8.8e-06 32_[+3]_40 chrV:8014860-8014940 8.8e-06 5_[+3]_67 chrV:1455389-1455469 8.8e-06 64_[+3]_8 chrIV:15649405-15649485 8.8e-06 11_[+3]_61 chrIV:6501415-6501495 8.8e-06 11_[+3]_61 chrII:11714885-11714965 8.8e-06 13_[+3]_59 chrX:16099360-16099440 8.8e-06 52_[+3]_20 chrII:9787918-9787998 8.8e-06 56_[+3]_16 chrIV:6460787-6460867 8.8e-06 26_[+3]_46 chrX:2960849-2960929 8.8e-06 63_[+3]_9 chrIV:16474527-16474607 8.8e-06 28_[+3]_44 chrIV:15119478-15119558 8.8e-06 7_[+3]_65 chrIV:15410586-15410666 8.8e-06 33_[+3]_39 chrIV:15120903-15120983 8.8e-06 4_[+3]_68 chrX:16341957-16342037 8.8e-06 7_[+3]_65 chrIV:14444258-14444338 8.8e-06 44_[+3]_28 chrIV:9001405-9001485 2e-05 70_[+3]_2 chrII:12968623-12968703 2e-05 24_[+3]_48 chrIV:9464628-9464708 2e-05 64_[+3]_8 chrIV:14562797-14562877 2e-05 43_[+3]_29 chrIV:15868442-15868522 2.7e-05 37_[+3]_35 chrX:16157691-16157771 2.7e-05 11_[+3]_61 chrV:2920279-2920359 3.8e-05 45_[+3]_27 chrX:15388475-15388555 3.8e-05 66_[+3]_6 chrIV:16808740-16808820 4.5e-05 10_[+3]_62 chrIV:15435555-15435635 5.6e-05 6_[+3]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTCCGC width=8 seqs=28 chrIV:15609983-15610063 ( 47) GGTTCCGC 1 chrV:11391214-11391294 ( 56) GGTTCCGC 1 chrV:20699055-20699135 ( 33) GGTTCCGC 1 chrV:8014860-8014940 ( 6) GGTTCCGC 1 chrV:1455389-1455469 ( 65) GGTTCCGC 1 chrIV:15649405-15649485 ( 12) GGTTCCGC 1 chrIV:6501415-6501495 ( 12) GGTTCCGC 1 chrII:11714885-11714965 ( 14) GGTTCCGC 1 chrX:16099360-16099440 ( 53) GGTTCCGC 1 chrII:9787918-9787998 ( 57) GGTTCCGC 1 chrIV:6460787-6460867 ( 27) GGTTCCGC 1 chrX:2960849-2960929 ( 64) GGTTCCGC 1 chrIV:16474527-16474607 ( 29) GGTTCCGC 1 chrIV:15119478-15119558 ( 8) GGTTCCGC 1 chrIV:15410586-15410666 ( 34) GGTTCCGC 1 chrIV:15120903-15120983 ( 5) GGTTCCGC 1 chrX:16341957-16342037 ( 8) GGTTCCGC 1 chrIV:14444258-14444338 ( 45) GGTTCCGC 1 chrIV:9001405-9001485 ( 71) GGTTTCGC 1 chrII:12968623-12968703 ( 25) GGTTTCGC 1 chrIV:9464628-9464708 ( 65) GGTTTCGC 1 chrIV:14562797-14562877 ( 44) GGTTTCGC 1 chrIV:15868442-15868522 ( 38) GGTCCCGC 1 chrX:16157691-16157771 ( 12) GGTCCCGC 1 chrV:2920279-2920359 ( 46) GGTTACGC 1 chrX:15388475-15388555 ( 67) GGTTACGC 1 chrIV:16808740-16808820 ( 11) GGCTCCGC 1 chrIV:15435555-15435635 ( 7) TGTTCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18967 E= 8.2e-023 -1145 -1145 215 -299 -1145 -1145 221 -1145 -1145 -262 -1145 177 -1145 -162 -1145 171 -197 184 -1145 -99 -1145 218 -1145 -1145 -1145 -1145 221 -1145 -1145 218 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 8.2e-023 0.000000 0.000000 0.964286 0.035714 0.000000 0.000000 1.000000 0.000000 0.000000 0.035714 0.000000 0.964286 0.000000 0.071429 0.000000 0.928571 0.071429 0.785714 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCCGC MEME-3 regular expression -------------------------------------------------------------------------------- GGTTCCGC -------------------------------------------------------------------------------- Time 13.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGACAYY MEME-4 width = 8 sites = 36 llr = 309 E-value = 3.8e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGACAYY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:711 pos.-specific C a8::a:46 probability G :2a::3:: matrix T ::::::54 bits 2.2 * * * 2.0 * * * 1.8 * *** 1.5 * *** Relative 1.3 ***** Entropy 1.1 ****** (12.4 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGACATC consensus G GCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACAYY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7253538-7253618 41 1.13e-05 tatcatacgc ccgacatc tcgcgagttc chrIV:6565768-6565848 11 1.13e-05 ATAAAAGCAG CCGACATC CCGCGGGATA chrIII:12845678-12845758 6 1.13e-05 TGCAG CCGACATC TTACAGGATT chrIV:16136464-16136544 27 1.13e-05 CTCTTGCCAT CCGACATC TTTCGGGTTC chrV:15982927-15983007 64 1.13e-05 TGCAAGGCAG CCGACATC GATCGAGGA chrII:2747983-2748063 72 1.13e-05 AGATGCGCAG CCGACATC T chrV:12047865-12047945 51 1.13e-05 TCAGTGTGGT CCGACATC TCCCGTGATG chrIII:11124020-11124100 67 1.13e-05 tatcaggtcg ccgacatc ctacga chrIV:14562797-14562877 31 1.13e-05 TGTGTCGCGT CCGACATC TTTCGGGTTT chrII:12968623-12968703 12 2.01e-05 ACTACAGCGC CCGACACC TGACAGGTTT chrX:16722125-16722205 30 2.01e-05 TTGGCGGTGG CCGACACC TCGCGGGTTT chrIV:15934095-15934175 40 2.01e-05 TGAACGGCGC CCGACACC TGACAGGCCC chrV:7595297-7595377 73 2.01e-05 GCAAAAGCGA CCGACACC chrIV:13695469-13695549 22 2.01e-05 ATCAATGCAC CCGACACC TCGCGAGTTC chrIV:15825117-15825197 20 4.35e-05 TTGGCAGCAT CCGACATT TACCGGCGGG chrIV:15982891-15982971 47 4.35e-05 TATAAACAAG CCGACATT TCACGAGTCT chrIV:15247540-15247620 67 4.35e-05 TGGTCAGCAC CCGACATT CCCAGG chrIII:11372560-11372640 63 6.16e-05 TATCTAGCAG CCGACACT AAACAGTTTT chrX:16099360-16099440 40 6.16e-05 ttagcagcaa ccgacact tccggggttc chrII:14945694-14945774 30 6.16e-05 AAAAAAGCAA CCGACGCC GTACGGGTCA chrV:11391214-11391294 43 7.27e-05 TCATGGTGAC CGGACATC TGGTGGGTTC chrII:11714885-11714965 1 9.27e-05 . CCGACGTT TCCCGGGTTC chrII:12647072-12647152 24 1.01e-04 AAAATGACAG CCGACGCT TCACGGGTTC chrIII:12848338-12848418 9 1.01e-04 AGTTGCAG CCGACGCT CTATGAGTTT chrIV:9464628-9464708 52 1.36e-04 AATACATGTG CGGACATT CTGCGGGTTT chrI:8761207-8761287 31 1.36e-04 TTCGGACGAC CGGACGTC CGGTTGTACA chrIV:16474527-16474607 16 1.36e-04 TCGCCAGCAC CCGACAAC AAACGGGTTC chrV:37424-37504 47 1.36e-04 TGTGTGGCAG CGGACATT ATGGGCCTTT chrIV:15234419-15234499 48 1.54e-04 ATCGGACGAC CGGACGCC GATTTGTACA chrI:4785655-4785735 64 1.54e-04 ATCGGACGAC CGGACGCC GATTTGTGC chrIV:5950085-5950165 42 1.54e-04 TGGACACTAC CGGACGCC TGTGCGTCCG chrIV:15604349-15604429 34 2.02e-04 GCTATACCCC CGGACGTT AAAATTGGTT chrIII:10576447-10576527 3 2.02e-04 GG CCGACAAT TTCCGAGTTT chrIV:5011181-5011261 3 2.02e-04 GG CCGACAAT TTCCGAGTTT chrII:13665110-13665190 7 2.02e-04 TAGCGG CCGACATA TCATGGGCCT chrIII:11001557-11001637 7 2.64e-04 GAGCGG CCGACGCA ATCCGGGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACAYY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7253538-7253618 1.1e-05 40_[+4]_32 chrIV:6565768-6565848 1.1e-05 10_[+4]_62 chrIII:12845678-12845758 1.1e-05 5_[+4]_67 chrIV:16136464-16136544 1.1e-05 26_[+4]_46 chrV:15982927-15983007 1.1e-05 63_[+4]_9 chrII:2747983-2748063 1.1e-05 71_[+4]_1 chrV:12047865-12047945 1.1e-05 50_[+4]_22 chrIII:11124020-11124100 1.1e-05 66_[+4]_6 chrIV:14562797-14562877 1.1e-05 30_[+4]_42 chrII:12968623-12968703 2e-05 11_[+4]_61 chrX:16722125-16722205 2e-05 29_[+4]_43 chrIV:15934095-15934175 2e-05 39_[+4]_33 chrV:7595297-7595377 2e-05 72_[+4] chrIV:13695469-13695549 2e-05 21_[+4]_51 chrIV:15825117-15825197 4.3e-05 19_[+4]_53 chrIV:15982891-15982971 4.3e-05 46_[+4]_26 chrIV:15247540-15247620 4.3e-05 66_[+4]_6 chrIII:11372560-11372640 6.2e-05 62_[+4]_10 chrX:16099360-16099440 6.2e-05 39_[+4]_33 chrII:14945694-14945774 6.2e-05 29_[+4]_43 chrV:11391214-11391294 7.3e-05 42_[+4]_30 chrII:11714885-11714965 9.3e-05 [+4]_72 chrII:12647072-12647152 0.0001 23_[+4]_49 chrIII:12848338-12848418 0.0001 8_[+4]_64 chrIV:9464628-9464708 0.00014 51_[+4]_21 chrI:8761207-8761287 0.00014 30_[+4]_42 chrIV:16474527-16474607 0.00014 15_[+4]_57 chrV:37424-37504 0.00014 46_[+4]_26 chrIV:15234419-15234499 0.00015 47_[+4]_25 chrI:4785655-4785735 0.00015 63_[+4]_9 chrIV:5950085-5950165 0.00015 41_[+4]_31 chrIV:15604349-15604429 0.0002 33_[+4]_39 chrIII:10576447-10576527 0.0002 2_[+4]_70 chrIV:5011181-5011261 0.0002 2_[+4]_70 chrII:13665110-13665190 0.0002 6_[+4]_66 chrIII:11001557-11001637 0.00026 6_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACAYY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGACAYY width=8 seqs=36 chrIV:7253538-7253618 ( 41) CCGACATC 1 chrIV:6565768-6565848 ( 11) CCGACATC 1 chrIII:12845678-12845758 ( 6) CCGACATC 1 chrIV:16136464-16136544 ( 27) CCGACATC 1 chrV:15982927-15983007 ( 64) CCGACATC 1 chrII:2747983-2748063 ( 72) CCGACATC 1 chrV:12047865-12047945 ( 51) CCGACATC 1 chrIII:11124020-11124100 ( 67) CCGACATC 1 chrIV:14562797-14562877 ( 31) CCGACATC 1 chrII:12968623-12968703 ( 12) CCGACACC 1 chrX:16722125-16722205 ( 30) CCGACACC 1 chrIV:15934095-15934175 ( 40) CCGACACC 1 chrV:7595297-7595377 ( 73) CCGACACC 1 chrIV:13695469-13695549 ( 22) CCGACACC 1 chrIV:15825117-15825197 ( 20) CCGACATT 1 chrIV:15982891-15982971 ( 47) CCGACATT 1 chrIV:15247540-15247620 ( 67) CCGACATT 1 chrIII:11372560-11372640 ( 63) CCGACACT 1 chrX:16099360-16099440 ( 40) CCGACACT 1 chrII:14945694-14945774 ( 30) CCGACGCC 1 chrV:11391214-11391294 ( 43) CGGACATC 1 chrII:11714885-11714965 ( 1) CCGACGTT 1 chrII:12647072-12647152 ( 24) CCGACGCT 1 chrIII:12848338-12848418 ( 9) CCGACGCT 1 chrIV:9464628-9464708 ( 52) CGGACATT 1 chrI:8761207-8761287 ( 31) CGGACGTC 1 chrIV:16474527-16474607 ( 16) CCGACAAC 1 chrV:37424-37504 ( 47) CGGACATT 1 chrIV:15234419-15234499 ( 48) CGGACGCC 1 chrI:4785655-4785735 ( 64) CGGACGCC 1 chrIV:5950085-5950165 ( 42) CGGACGCC 1 chrIV:15604349-15604429 ( 34) CGGACGTT 1 chrIII:10576447-10576527 ( 3) CCGACAAT 1 chrIV:5011181-5011261 ( 3) CCGACAAT 1 chrII:13665110-13665190 ( 7) CCGACATA 1 chrIII:11001557-11001637 ( 7) CCGACGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACAYY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.11739 E= 3.8e-007 -1181 218 -1181 -1181 -1181 182 4 -1181 -1181 -1181 221 -1181 184 -1181 -1181 -1181 -1181 218 -1181 -1181 137 -1181 36 -1181 -175 82 -1181 90 -233 141 -1181 35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACAYY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 3.8e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.000000 0.277778 0.000000 0.083333 0.388889 0.000000 0.527778 0.055556 0.583333 0.000000 0.361111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACAYY MEME-4 regular expression -------------------------------------------------------------------------------- C[CG]GAC[AG][TC][CT] -------------------------------------------------------------------------------- Time 17.51 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCGGCGC MEME-5 width = 8 sites = 17 llr = 175 E-value = 8.0e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCGGCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A a1:::::: pos.-specific C ::9::8:9 probability G :9:aa:a1 matrix T ::1::2:: bits 2.2 ** * 2.0 ** * 1.8 * ** ** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCGGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:5602624-5602704 3 6.61e-06 at agcggcgc gcggaacccg chrIV:6914485-6914565 44 6.61e-06 agttaaacaa agcggcgc gcggaaccag chrIV:15717685-15717765 19 6.61e-06 agttaaacgt agcggcgc gcggaacccg chrV:7062971-7063051 25 6.61e-06 agttaaacat agcggcgc gcggaacccg chrIV:5309295-5309375 30 6.61e-06 agttaaacat agcggcgc gcggaacccg chrX:14637581-14637661 64 6.61e-06 agtcgaacat agcggcgc gcggaaccc chrIV:14307761-14307841 52 6.61e-06 agttaaacat agcggcgc gcggaacccg chrX:16341957-16342037 69 6.61e-06 agttaaaaac agcggcgc gcgt chrI:10594196-10594276 55 1.51e-05 agttaaacat agcggtgc gcggaaccca chrX:16565927-16566007 2 1.51e-05 C AGCGGTGC GCGGAACTCG chrIV:14240357-14240437 4 1.51e-05 cat agcggtgc gcggaacccg chrIV:16005616-16005696 49 2.17e-05 CAGTGGTAGT AGCGGCGG TCGGCGTTTC chrIV:14335958-14336038 29 2.17e-05 ATCGGCAGCA AGCGGCGG GCATGCTAAC chrIV:15950110-15950190 59 3.02e-05 cgctgaacgt agtggcgc gcggaacccg chrX:14680633-14680713 47 3.02e-05 agtttaacac agtggcgc gcggaacccg chrV:17428726-17428806 14 3.87e-05 AACCGTCTCT AACGGCGC GTCTCTGTGC chrIV:15934095-15934175 32 3.87e-05 TTCAAAAATG AACGGCGC CCGACACCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:5602624-5602704 6.6e-06 2_[+5]_70 chrIV:6914485-6914565 6.6e-06 43_[+5]_29 chrIV:15717685-15717765 6.6e-06 18_[+5]_54 chrV:7062971-7063051 6.6e-06 24_[+5]_48 chrIV:5309295-5309375 6.6e-06 29_[+5]_43 chrX:14637581-14637661 6.6e-06 63_[+5]_9 chrIV:14307761-14307841 6.6e-06 51_[+5]_21 chrX:16341957-16342037 6.6e-06 68_[+5]_4 chrI:10594196-10594276 1.5e-05 54_[+5]_18 chrX:16565927-16566007 1.5e-05 1_[+5]_71 chrIV:14240357-14240437 1.5e-05 3_[+5]_69 chrIV:16005616-16005696 2.2e-05 48_[+5]_24 chrIV:14335958-14336038 2.2e-05 28_[+5]_44 chrIV:15950110-15950190 3e-05 58_[+5]_14 chrX:14680633-14680713 3e-05 46_[+5]_26 chrV:17428726-17428806 3.9e-05 13_[+5]_59 chrIV:15934095-15934175 3.9e-05 31_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCGGCGC width=8 seqs=17 chrV:5602624-5602704 ( 3) AGCGGCGC 1 chrIV:6914485-6914565 ( 44) AGCGGCGC 1 chrIV:15717685-15717765 ( 19) AGCGGCGC 1 chrV:7062971-7063051 ( 25) AGCGGCGC 1 chrIV:5309295-5309375 ( 30) AGCGGCGC 1 chrX:14637581-14637661 ( 64) AGCGGCGC 1 chrIV:14307761-14307841 ( 52) AGCGGCGC 1 chrX:16341957-16342037 ( 69) AGCGGCGC 1 chrI:10594196-10594276 ( 55) AGCGGTGC 1 chrX:16565927-16566007 ( 2) AGCGGTGC 1 chrIV:14240357-14240437 ( 4) AGCGGTGC 1 chrIV:16005616-16005696 ( 49) AGCGGCGG 1 chrIV:14335958-14336038 ( 29) AGCGGCGG 1 chrIV:15950110-15950190 ( 59) AGTGGCGC 1 chrX:14680633-14680713 ( 47) AGTGGCGC 1 chrV:17428726-17428806 ( 14) AACGGCGC 1 chrIV:15934095-15934175 ( 32) AACGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 8.0e-006 184 -1073 -1073 -1073 -125 -1073 202 -1073 -1073 200 -1073 -127 -1073 -1073 221 -1073 -1073 -1073 221 -1073 -1073 190 -1073 -68 -1073 -1073 221 -1073 -1073 200 -88 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 8.0e-006 1.000000 0.000000 0.000000 0.000000 0.117647 0.000000 0.882353 0.000000 0.000000 0.882353 0.000000 0.117647 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.823529 0.000000 0.176471 0.000000 0.000000 1.000000 0.000000 0.000000 0.882353 0.117647 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGCGC MEME-5 regular expression -------------------------------------------------------------------------------- AGCGGCGC -------------------------------------------------------------------------------- Time 21.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:14562797-14562877 2.48e-04 30_[+4(1.13e-05)]_5_[+3(2.01e-05)]_\ 29 chrIV:16307104-16307184 4.76e-03 37_[+1(8.49e-05)]_35 chrIV:16038142-16038222 4.93e-01 80 chrIV:5083956-5084036 2.44e-01 80 chrIV:15435555-15435635 1.62e-02 6_[+3(5.64e-05)]_66 chrII:13665110-13665190 2.71e-04 2_[+1(3.60e-05)]_53_[+1(2.94e-05)]_\ 9 chrIV:14444258-14444338 8.19e-05 44_[+3(8.78e-06)]_28 chrX:16341957-16342037 1.96e-04 7_[+3(8.78e-06)]_53_[+5(6.61e-06)]_\ 4 chrX:14680633-14680713 1.31e-05 46_[+5(3.02e-05)]_[+2(8.53e-06)]_18 chrIV:17058654-17058734 1.39e-01 34_[+3(8.78e-05)]_38 chrII:12948409-12948489 1.24e-02 26_[+4(4.35e-05)]_46 chrV:37424-37504 2.57e-03 23_[+1(2.94e-05)]_49 chrIV:16035241-16035321 9.53e-01 80 chrIII:12848338-12848418 5.73e-04 45_[+1(6.80e-06)]_27 chrIV:13695469-13695549 9.87e-06 21_[+4(2.01e-05)]_24_[+2(4.17e-05)]_\ 9_[+1(6.80e-06)]_2 chrIV:15369434-15369514 9.23e-01 80 chrX:16157691-16157771 1.85e-06 11_[+3(2.69e-05)]_6_[+1(6.80e-06)]_\ 47 chrIV:15120903-15120983 6.55e-03 4_[+3(8.78e-06)]_68 chrIV:16041150-16041230 7.05e-01 80 chrX:16309884-16309964 4.27e-05 23_[+2(8.53e-06)]_9_[+1(2.94e-05)]_\ 32 chrIV:15283742-15283822 9.43e-03 80 chrIV:16028649-16028729 9.57e-03 34_[+1(2.94e-05)]_38 chrIV:15410586-15410666 4.56e-03 33_[+3(8.78e-06)]_39 chrIV:15152367-15152447 1.00e+00 80 chrIV:14891325-14891405 9.22e-01 80 chrIV:15585871-15585951 9.97e-01 80 chrIV:14525427-14525507 9.89e-01 80 chrX:16337127-16337207 4.93e-02 80 chrIV:17193649-17193729 1.00e+00 80 chrIV:15247540-15247620 1.05e-01 66_[+4(4.35e-05)]_6 chrIV:15794148-15794228 4.63e-01 80 chrIV:6662815-6662895 1.43e-02 80 chrIV:16075557-16075637 2.54e-01 80 chrII:12383169-12383249 1.69e-02 19_[+2(3.05e-05)]_53 chrIV:14335958-14336038 5.52e-03 28_[+5(2.17e-05)]_44 chrIV:16709913-16709993 2.90e-01 80 chrIV:13687161-13687241 7.01e-02 80 chrIV:14755064-14755144 6.12e-01 80 chrIII:10524952-10525032 8.35e-01 80 chrIV:16873461-16873541 1.00e+00 80 chrIV:14864687-14864767 2.96e-01 80 chrX:14657567-14657647 1.94e-04 11_[+1(3.60e-05)]_61 chrIV:15953861-15953941 1.53e-01 80 chrIV:14627544-14627624 1.00e+00 80 chrIV:15606588-15606668 4.24e-01 80 chrIV:14981104-14981184 7.64e-01 80 chrIV:16237127-16237207 3.68e-02 80 chrIV:14467028-14467108 9.13e-01 80 chrIV:6140490-6140570 7.59e-01 80 chrIV:14383618-14383698 6.25e-02 80 chrIV:13700964-13701044 4.92e-01 80 chrIV:15002943-15003023 1.00e+00 80 chrII:6990054-6990134 3.16e-02 80 chrIV:14307761-14307841 3.19e-05 51_[+5(6.61e-06)]_[+2(8.53e-06)]_13 chrIV:14591240-14591320 4.15e-01 80 chrII:14945694-14945774 7.47e-03 29_[+4(6.16e-05)]_43 chrIV:14564012-14564092 6.67e-01 80 chrIV:15119478-15119558 2.23e-03 7_[+3(8.78e-06)]_65 chrX:15222932-15223012 4.98e-03 13_[+2(9.72e-05)]_9_[+1(5.82e-05)]_\ 42 chrIV:13883414-13883494 2.64e-01 80 chrIV:15982891-15982971 2.43e-01 46_[+4(4.35e-05)]_26 chrX:14637581-14637661 2.28e-05 63_[+5(6.61e-06)]_[+2(8.53e-06)]_1 chrIV:16917496-16917576 1.35e-03 34_[+2(3.05e-05)]_9_[+1(9.16e-05)]_\ 21 chrIV:17150582-17150662 7.13e-01 80 chrIV:15825117-15825197 1.41e-03 19_[+4(4.35e-05)]_53 chrIV:588818-588898 1.55e-03 25_[+4(1.13e-05)]_47 chrIV:15554951-15555031 5.48e-01 80 chrIV:15868442-15868522 1.12e-04 37_[+3(2.69e-05)]_6_[+1(6.80e-06)]_\ 21 chrX:15345519-15345599 9.28e-05 16_[+2(8.53e-06)]_9_[+1(2.94e-05)]_\ 39 chrV:7595297-7595377 7.68e-05 36_[+1(2.94e-05)]_28_[+4(2.01e-05)] chrIV:15950110-15950190 3.87e-04 58_[+5(3.02e-05)]_[+2(8.53e-06)]_6 chrIV:14695234-14695314 1.00e+00 80 chrI:4389350-4389430 3.20e-05 35_[+2(8.53e-06)]_9_[+1(6.80e-06)]_\ 20 chrIV:15136261-15136341 1.00e+00 80 chrV:9392123-9392203 3.48e-02 24_[+2(4.17e-05)]_48 chrX:872103-872183 1.44e-06 43_[+2(8.53e-06)]_9_[+1(6.80e-06)]_\ 12 chrIV:5309295-5309375 1.53e-06 29_[+5(6.61e-06)]_[+2(8.53e-06)]_9_\ [+1(5.82e-05)]_18 chrIV:15572406-15572486 9.95e-01 80 chrX:15388475-15388555 3.41e-05 49_[+1(3.60e-05)]_9_[+3(3.81e-05)]_\ 6 chrII:15019950-15020030 1.63e-03 35_[+1(6.80e-06)]_37 chrIV:16474527-16474607 5.18e-08 28_[+3(8.78e-06)]_6_[+2(8.53e-06)]_\ 9_[+1(7.80e-05)]_13 chrI:13317125-13317205 1.47e-02 30_[+4(4.35e-05)]_42 chrIV:14863973-14864053 9.96e-01 80 chrIV:14420362-14420442 6.79e-01 80 chrII:14010817-14010897 3.83e-04 3_[+1(2.94e-05)]_17_[+1(6.80e-06)]_\ 44 chrIV:13855576-13855656 5.31e-01 80 chrIV:15864764-15864844 9.94e-01 80 chrX:2960849-2960929 3.87e-06 46_[+1(3.60e-05)]_9_[+3(8.78e-06)]_\ 9 chrV:7062971-7063051 4.32e-06 24_[+5(6.61e-06)]_[+2(8.53e-06)]_9_\ [+1(5.82e-05)]_23 chrIV:6164855-6164935 9.57e-02 80 chrIV:16442789-16442869 8.81e-01 80 chrIV:7960421-7960501 8.02e-01 80 chrII:11842948-11843028 4.69e-02 13_[+1(2.94e-05)]_23_[+1(2.94e-05)]_\ 28 chrIV:15219078-15219158 1.00e+00 80 chrIV:15997318-15997398 9.41e-01 80 chrIII:11124020-11124100 1.79e-02 66_[+4(1.13e-05)]_6 chrIV:5950085-5950165 9.16e-03 80 chrIV:14932721-14932801 3.84e-04 25_[+1(3.60e-05)]_47 chrIV:13588775-13588855 1.50e-01 80 chrIV:5261889-5261969 9.78e-01 80 chrIV:6460787-6460867 1.22e-02 26_[+3(8.78e-06)]_46 chrIV:15844212-15844292 7.38e-01 80 chrIV:16535030-16535110 3.66e-04 26_[+2(6.43e-05)]_9_[+1(6.80e-06)]_\ 29 chrIV:14377409-14377489 1.58e-03 59_[+1(3.60e-05)]_13 chrIV:16808740-16808820 8.84e-02 10_[+3(4.49e-05)]_62 chrV:12047865-12047945 2.50e-02 50_[+4(1.13e-05)]_22 chrIV:14387655-14387735 6.40e-01 80 chrIV:15392042-15392122 9.26e-01 80 chrIV:15703831-15703911 6.18e-01 80 chrIV:14305874-14305954 8.71e-01 80 chrIV:15365642-15365722 9.79e-01 80 chrV:14362150-14362230 2.31e-02 50_[+1(2.94e-05)]_22 chrIV:5833012-5833092 8.54e-01 80 chrIV:15717685-15717765 4.98e-06 18_[+5(6.61e-06)]_[+2(8.53e-06)]_46 chrIV:13814510-13814590 2.07e-01 18_[+3(8.78e-05)]_54 chrIV:16044215-16044295 9.73e-01 80 chrIV:15525051-15525131 1.42e-01 80 chrIV:15695374-15695454 8.41e-01 80 chrIV:5011181-5011261 3.89e-04 60_[+2(6.43e-05)]_12 chrIV:13819757-13819837 1.00e+00 80 chrIV:15168577-15168657 9.84e-02 80 chrV:20803618-20803698 1.48e-05 45_[+2(8.53e-06)]_9_[+1(6.80e-06)]_\ 10 chrII:9787918-9787998 1.74e-05 38_[+1(3.60e-05)]_10_[+3(8.78e-06)]_\ 16 chrIV:15394853-15394933 7.65e-03 46_[+1(3.60e-05)]_26 chrIV:16471711-16471791 3.78e-02 80 chrI:1672425-1672505 4.48e-05 29_[+2(8.53e-06)]_9_[+1(6.80e-06)]_\ 26 chrIV:16593034-16593114 2.56e-03 65_[+2(8.53e-06)]_7 chrV:2739730-2739810 2.66e-04 70_[+2(8.53e-06)]_2 chrX:16099360-16099440 4.44e-04 39_[+4(6.16e-05)]_5_[+3(8.78e-06)]_\ 20 chrIV:6419383-6419463 4.92e-01 80 chrIV:14085870-14085950 8.03e-01 80 chrII:11714885-11714965 1.73e-06 [+4(9.27e-05)]_5_[+3(8.78e-06)]_51_\ [+2(8.53e-06)] chrIV:6501415-6501495 2.04e-02 11_[+3(8.78e-06)]_61 chrIV:13795330-13795410 9.74e-01 80 chrV:381712-381792 8.82e-01 80 chrIV:14730122-14730202 9.26e-01 80 chrI:4785655-4785735 6.73e-03 24_[+1(7.80e-05)]_48 chrIV:14240357-14240437 8.53e-06 3_[+5(1.51e-05)]_[+2(8.53e-06)]_9_\ [+1(5.82e-05)]_44 chrIV:16209630-16209710 5.93e-03 45_[+1(5.82e-05)]_27 chrIV:16603764-16603844 5.18e-01 80 chrIV:15807065-15807145 6.38e-01 80 chrIV:16033446-16033526 5.49e-01 80 chrIV:13709200-13709280 1.09e-01 24_[+1(2.94e-05)]_48 chrV:7888204-7888284 2.12e-03 25_[+1(3.60e-05)]_47 chrIV:16036210-16036290 8.65e-02 80 chrIII:5734445-5734525 7.07e-04 80 chrIV:15649405-15649485 3.73e-03 11_[+3(8.78e-06)]_61 chrIV:13814711-13814791 4.16e-01 80 chrV:4794811-4794891 7.23e-02 80 chrII:8670996-8671076 1.14e-04 42_[+1(6.80e-06)]_30 chrX:2362941-2363021 1.01e-05 46_[+2(6.43e-05)]_9_[+1(6.80e-06)]_\ 9 chrV:1455389-1455469 6.85e-06 47_[+1(3.60e-05)]_9_[+3(8.78e-06)]_\ 8 chrIV:14285807-14285887 9.69e-01 80 chrIV:15805186-15805266 1.50e-01 54_[+3(8.78e-05)]_18 chrIV:6529978-6530058 5.01e-01 80 chrV:2920279-2920359 1.31e-05 28_[+1(3.60e-05)]_9_[+3(3.81e-05)]_\ 27 chrIV:15934095-15934175 9.45e-04 31_[+5(3.87e-05)]_[+4(2.01e-05)]_33 chrIII:5748451-5748531 1.62e-02 80 chrIV:14439395-14439475 9.02e-01 80 chrIV:13602131-13602211 6.50e-01 80 chrIV:14586898-14586978 1.12e-02 35_[+2(1.95e-05)]_37 chrIV:14364712-14364792 8.73e-01 80 chrIV:15234419-15234499 1.68e-02 80 chrII:7232105-7232185 4.03e-05 16_[+2(8.53e-06)]_10_[+1(2.94e-05)]_\ 38 chrIV:16216123-16216203 7.07e-01 80 chrIV:16596665-16596745 9.10e-01 80 chrI:13859224-13859304 1.24e-04 18_[+2(8.53e-06)]_10_[+1(8.49e-05)]_\ 36 chrIV:14980330-14980410 9.78e-01 80 chrV:8014860-8014940 2.04e-02 5_[+3(8.78e-06)]_67 chrII:13830431-13830511 1.77e-02 43_[+4(4.35e-05)]_29 chrI:8761207-8761287 2.37e-02 80 chrIV:14183414-14183494 5.46e-01 80 chrIV:13601573-13601653 7.29e-02 80 chrIII:11372560-11372640 4.42e-04 62_[+4(6.16e-05)]_10 chrIV:14961474-14961554 9.52e-01 80 chrV:14396259-14396339 3.84e-04 37_[+1(3.60e-05)]_35 chrII:7171753-7171833 7.59e-03 28_[+2(8.53e-06)]_44 chrX:16566508-16566588 7.27e-06 28_[+2(8.53e-06)]_12_[+1(1.20e-05)]_\ 24 chrIV:14836105-14836185 4.82e-01 80 chrIV:13687800-13687880 9.84e-01 80 chrII:12647072-12647152 9.62e-04 59_[+1(2.94e-05)]_13 chrV:17428726-17428806 6.93e-02 13_[+5(3.87e-05)]_59 chrIV:14668927-14669007 3.76e-01 80 chrII:13946648-13946728 7.20e-01 80 chrIV:16570319-16570399 1.00e+00 80 chrIV:6914485-6914565 1.20e-06 43_[+5(6.61e-06)]_[+2(8.53e-06)]_6_\ [+1(5.82e-05)]_7 chrIV:5814436-5814516 5.13e-01 80 chrIV:13825001-13825081 7.49e-01 80 chrX:2763915-2763995 1.00e-05 50_[+2(1.95e-05)]_9_[+1(2.94e-05)]_\ 5 chrIV:15662880-15662960 8.54e-01 80 chrIV:13898303-13898383 9.91e-01 80 chrIV:5264876-5264956 9.95e-01 80 chrV:20699055-20699135 1.14e-05 19_[+4(1.13e-05)]_5_[+3(8.78e-06)]_\ 40 chrIV:13600763-13600843 1.25e-01 22_[+2(3.05e-05)]_50 chrIV:16600218-16600298 1.00e+00 80 chrX:16722125-16722205 5.42e-04 29_[+4(2.01e-05)]_43 chrV:13064336-13064416 1.55e-04 20_[+2(1.95e-05)]_9_[+1(6.80e-06)]_\ 35 chrX:16565927-16566007 1.92e-06 1_[+5(1.51e-05)]_[+2(1.95e-05)]_9_\ [+1(5.82e-05)]_46 chrII:2747983-2748063 1.04e-04 2_[+1(3.60e-05)]_61_[+4(1.13e-05)]_\ 1 chrV:16309228-16309308 4.73e-03 53_[+1(2.94e-05)]_19 chrV:11391214-11391294 3.20e-03 42_[+4(7.27e-05)]_5_[+3(8.78e-06)]_\ 17 chrIV:14597543-14597623 1.02e-01 19_[+1(9.16e-05)]_53 chrIV:15853087-15853167 6.91e-01 80 chrI:10594196-10594276 4.12e-05 54_[+5(1.51e-05)]_[+2(8.53e-06)]_10 chrIV:479532-479612 1.32e-01 80 chrIV:14780714-14780794 2.78e-03 62_[+2(6.43e-05)]_10 chrX:14424379-14424459 6.33e-03 57_[+1(6.80e-06)]_15 chrIV:16373032-16373112 7.46e-01 80 chrX:13690454-13690534 4.70e-01 80 chrV:15982927-15983007 2.96e-03 63_[+4(1.13e-05)]_9 chrIV:14023149-14023229 9.69e-01 80 chrX:14324524-14324604 2.80e-03 80 chrIV:14735046-14735126 7.87e-01 80 chrIV:5274308-5274388 6.32e-01 80 chrIV:9464628-9464708 7.53e-03 64_[+3(2.01e-05)]_8 chrIV:14407440-14407520 9.91e-01 80 chrIV:14431634-14431714 1.00e+00 80 chrIV:16136464-16136544 3.08e-04 26_[+4(1.13e-05)]_46 chrIII:12845678-12845758 7.38e-04 5_[+4(1.13e-05)]_32_[+4(1.13e-05)]_\ 27 chrIII:11001557-11001637 4.88e-05 2_[+1(3.60e-05)]_41_[+1(2.94e-05)]_\ 21 chrIV:6792876-6792956 2.63e-03 51_[+1(8.49e-05)]_21 chrV:5602624-5602704 3.65e-06 2_[+5(6.61e-06)]_[+2(8.53e-06)]_9_\ [+1(5.82e-05)]_45 chrIV:6565768-6565848 1.91e-04 10_[+4(1.13e-05)]_39_[+1(2.94e-05)]_\ 15 chrX:15171085-15171165 9.34e-02 72_[+1(5.82e-05)] chrIV:7253538-7253618 3.03e-02 40_[+4(1.13e-05)]_32 chrIV:16005616-16005696 2.62e-02 48_[+5(2.17e-05)]_24 chrIV:15173483-15173563 9.96e-01 80 chrIV:15880299-15880379 9.37e-01 80 chrIV:15780923-15781003 9.47e-01 80 chrII:12968623-12968703 3.30e-05 11_[+4(2.01e-05)]_5_[+3(2.01e-05)]_\ 48 chrIV:9130825-9130905 1.78e-01 80 chrIV:16629755-16629835 9.98e-01 80 chrI:9631067-9631147 8.77e-01 80 chrIV:14759807-14759887 7.48e-01 80 chrIV:9001405-9001485 4.61e-04 3_[+2(9.72e-05)]_59_[+3(2.01e-05)]_\ 2 chrX:4103238-4103318 3.04e-04 7_[+2(7.53e-05)]_9_[+1(6.80e-06)]_\ 48 chrII:3113447-3113527 1.38e-05 34_[+2(8.53e-06)]_9_[+1(6.80e-06)]_\ 21 chrIII:6157470-6157550 3.47e-01 80 chrIV:15978633-15978713 8.47e-01 80 chrIII:11789640-11789720 7.14e-04 46_[+1(3.60e-05)]_26 chrIV:15609983-15610063 1.78e-05 33_[+4(1.13e-05)]_5_[+3(8.78e-06)]_\ 26 chrIV:1260637-1260717 3.22e-04 30_[+1(3.60e-05)]_42 chrIII:10576447-10576527 3.89e-04 60_[+2(6.43e-05)]_12 chrIV:14602133-14602213 3.74e-01 80 chrX:17502354-17502434 3.30e-02 31_[+1(6.80e-06)]_41 chrIV:14862702-14862782 2.27e-02 19_[+1(9.16e-05)]_53 chrIV:9140340-9140420 5.50e-01 80 chrIV:15547624-15547704 5.84e-01 80 chrIV:13893271-13893351 1.52e-02 31_[+1(2.94e-05)]_41 chrIV:15604349-15604429 1.18e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************