******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/skn-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:1420684-1420764 1.0000 80 chrX:591215-591295 1.0000 80 chrX:1456500-1456580 1.0000 80 chrX:536532-536612 1.0000 80 chrX:1419470-1419550 1.0000 80 chrV:6206657-6206737 1.0000 80 chrII:13624492-13624572 1.0000 80 chrIII:8552273-8552353 1.0000 80 chrV:11516336-11516416 1.0000 80 chrV:2057490-2057570 1.0000 80 chrIV:17268228-17268308 1.0000 80 chrII:9038888-9038968 1.0000 80 chrII:8138158-8138238 1.0000 80 chrII:7060968-7061048 1.0000 80 chrV:10709558-10709638 1.0000 80 chrIII:11836875-11836955 1.0000 80 chrX:16159487-16159567 1.0000 80 chrIII:13672768-13672848 1.0000 80 chrI:4140416-4140496 1.0000 80 chrIII:11244463-11244543 1.0000 80 chrIV:12034137-12034217 1.0000 80 chrII:14497995-14498075 1.0000 80 chrX:2641255-2641335 1.0000 80 chrIV:10142077-10142157 1.0000 80 chrII:5378272-5378352 1.0000 80 chrII:15175331-15175411 1.0000 80 chrIII:6146076-6146156 1.0000 80 chrV:2259880-2259960 1.0000 80 chrI:7763697-7763777 1.0000 80 chrII:220734-220814 1.0000 80 chrIV:9064715-9064795 1.0000 80 chrI:5744035-5744115 1.0000 80 chrIII:10471099-10471179 1.0000 80 chrX:575252-575332 1.0000 80 chrIII:8923513-8923593 1.0000 80 chrII:14290971-14291051 1.0000 80 chrV:5018908-5018988 1.0000 80 chrV:8658082-8658162 1.0000 80 chrIV:11316246-11316326 1.0000 80 chrIV:4085191-4085271 1.0000 80 chrX:2258491-2258571 1.0000 80 chrI:6740074-6740154 1.0000 80 chrII:8483943-8484023 1.0000 80 chrV:5017879-5017959 1.0000 80 chrIII:3879523-3879603 1.0000 80 chrII:15173361-15173441 1.0000 80 chrII:13618027-13618107 1.0000 80 chrV:10770198-10770278 1.0000 80 chrV:7811933-7812013 1.0000 80 chrIV:9051164-9051244 1.0000 80 chrIV:6522470-6522550 1.0000 80 chrI:1049244-1049324 1.0000 80 chrX:7815387-7815467 1.0000 80 chrX:1080737-1080817 1.0000 80 chrV:12409178-12409258 1.0000 80 chrV:5131576-5131656 1.0000 80 chrIV:2711443-2711523 1.0000 80 chrX:8286309-8286389 1.0000 80 chrX:15441150-15441230 1.0000 80 chrIII:3306448-3306528 1.0000 80 chrII:4908388-4908468 1.0000 80 chrX:10877490-10877570 1.0000 80 chrX:602941-603021 1.0000 80 chrII:6973686-6973766 1.0000 80 chrIII:9912682-9912762 1.0000 80 chrII:10100050-10100130 1.0000 80 chrII:12095195-12095275 1.0000 80 chrV:13464244-13464324 1.0000 80 chrX:2014051-2014131 1.0000 80 chrII:31707-31787 1.0000 80 chrIII:13716485-13716565 1.0000 80 chrI:8985749-8985829 1.0000 80 chrX:1479323-1479403 1.0000 80 chrI:8664866-8664946 1.0000 80 chrI:3908580-3908660 1.0000 80 chrIII:12551527-12551607 1.0000 80 chrIV:8377064-8377144 1.0000 80 chrIII:8446447-8446527 1.0000 80 chrI:13391261-13391341 1.0000 80 chrI:9862710-9862790 1.0000 80 chrII:5329734-5329814 1.0000 80 chrIII:11101432-11101512 1.0000 80 chrX:2085642-2085722 1.0000 80 chrX:7143656-7143736 1.0000 80 chrX:1044472-1044552 1.0000 80 chrIV:6910224-6910304 1.0000 80 chrX:11791508-11791588 1.0000 80 chrV:11570290-11570370 1.0000 80 chrI:12966442-12966522 1.0000 80 chrIII:4204259-4204339 1.0000 80 chrV:14773189-14773269 1.0000 80 chrV:5087188-5087268 1.0000 80 chrV:5085229-5085309 1.0000 80 chrIII:9059109-9059189 1.0000 80 chrIV:10003548-10003628 1.0000 80 chrV:19672545-19672625 1.0000 80 chrX:763638-763718 1.0000 80 chrIV:9259827-9259907 1.0000 80 chrX:4342895-4342975 1.0000 80 chrII:122204-122284 1.0000 80 chrIII:11149655-11149735 1.0000 80 chrV:13756843-13756923 1.0000 80 chrV:12101003-12101083 1.0000 80 chrIV:10144658-10144738 1.0000 80 chrX:2572755-2572835 1.0000 80 chrII:6844389-6844469 1.0000 80 chrIII:6489086-6489166 1.0000 80 chrV:16395312-16395392 1.0000 80 chrIII:5581210-5581290 1.0000 80 chrIV:1455130-1455210 1.0000 80 chrII:4854868-4854948 1.0000 80 chrIV:4097099-4097179 1.0000 80 chrI:6109771-6109851 1.0000 80 chrIV:3520535-3520615 1.0000 80 chrIV:4209782-4209862 1.0000 80 chrIII:4242652-4242732 1.0000 80 chrII:9062704-9062784 1.0000 80 chrII:8750330-8750410 1.0000 80 chrII:10950208-10950288 1.0000 80 chrIV:6622289-6622369 1.0000 80 chrV:6110687-6110767 1.0000 80 chrI:4175050-4175130 1.0000 80 chrIII:1243382-1243462 1.0000 80 chrII:8675523-8675603 1.0000 80 chrIV:1167494-1167574 1.0000 80 chrX:9705737-9705817 1.0000 80 chrI:3785903-3785983 1.0000 80 chrX:2439907-2439987 1.0000 80 chrII:7364226-7364306 1.0000 80 chrI:10565998-10566078 1.0000 80 chrV:17859243-17859323 1.0000 80 chrII:4881949-4882029 1.0000 80 chrV:1805905-1805985 1.0000 80 chrX:9550112-9550192 1.0000 80 chrIII:3922144-3922224 1.0000 80 chrIII:9747316-9747396 1.0000 80 chrX:1026954-1027034 1.0000 80 chrIII:8490429-8490509 1.0000 80 chrIV:12331121-12331201 1.0000 80 chrIII:9956801-9956881 1.0000 80 chrIII:8244192-8244272 1.0000 80 chrV:10925790-10925870 1.0000 80 chrIV:11006545-11006625 1.0000 80 chrV:10255301-10255381 1.0000 80 chrI:7598160-7598240 1.0000 80 chrV:8285819-8285899 1.0000 80 chrX:2316336-2316416 1.0000 80 chrV:16095001-16095081 1.0000 80 chrII:15185552-15185632 1.0000 80 chrX:2559572-2559652 1.0000 80 chrX:4521990-4522070 1.0000 80 chrX:4490510-4490590 1.0000 80 chrV:1804200-1804280 1.0000 80 chrV:5584527-5584607 1.0000 80 chrI:515283-515363 1.0000 80 chrIII:3703523-3703603 1.0000 80 chrI:11934925-11935005 1.0000 80 chrI:7596928-7597008 1.0000 80 chrV:12450600-12450680 1.0000 80 chrI:10689498-10689578 1.0000 80 chrX:6642866-6642946 1.0000 80 chrX:5714235-5714315 1.0000 80 chrV:7413226-7413306 1.0000 80 chrIV:4208246-4208326 1.0000 80 chrII:9231388-9231468 1.0000 80 chrIV:9932217-9932297 1.0000 80 chrV:1627415-1627495 1.0000 80 chrX:1536296-1536376 1.0000 80 chrIII:13056927-13057007 1.0000 80 chrV:1285856-1285936 1.0000 80 chrI:5071433-5071513 1.0000 80 chrIII:188636-188716 1.0000 80 chrIII:13344670-13344750 1.0000 80 chrII:8143719-8143799 1.0000 80 chrV:2250230-2250310 1.0000 80 chrX:1961072-1961152 1.0000 80 chrI:8083450-8083530 1.0000 80 chrX:17138304-17138384 1.0000 80 chrX:16930394-16930474 1.0000 80 chrIV:4788486-4788566 1.0000 80 chrI:2773906-2773986 1.0000 80 chrII:11761874-11761954 1.0000 80 chrIII:10202534-10202614 1.0000 80 chrX:6836274-6836354 1.0000 80 chrIII:1308338-1308418 1.0000 80 chrIV:14609926-14610006 1.0000 80 chrIII:11039397-11039477 1.0000 80 chrV:12599680-12599760 1.0000 80 chrX:600873-600953 1.0000 80 chrX:587843-587923 1.0000 80 chrV:3803521-3803601 1.0000 80 chrV:2281684-2281764 1.0000 80 chrV:20414072-20414152 1.0000 80 chrX:11790886-11790966 1.0000 80 chrX:1394545-1394625 1.0000 80 chrI:7601427-7601507 1.0000 80 chrIII:4151786-4151866 1.0000 80 chrX:11472608-11472688 1.0000 80 chrI:3560106-3560186 1.0000 80 chrV:5081103-5081183 1.0000 80 chrX:1121716-1121796 1.0000 80 chrI:9248840-9248920 1.0000 80 chrI:6850028-6850108 1.0000 80 chrX:1424517-1424597 1.0000 80 chrV:12261559-12261639 1.0000 80 chrIV:4743360-4743440 1.0000 80 chrI:12040276-12040356 1.0000 80 chrV:7955308-7955388 1.0000 80 chrIV:7550001-7550081 1.0000 80 chrII:9160288-9160368 1.0000 80 chrX:4137560-4137640 1.0000 80 chrI:8027927-8028007 1.0000 80 chrII:9108605-9108685 1.0000 80 chrX:14510530-14510610 1.0000 80 chrI:4847362-4847442 1.0000 80 chrX:15617306-15617386 1.0000 80 chrV:2264594-2264674 1.0000 80 chrIII:8355224-8355304 1.0000 80 chrIII:5163106-5163186 1.0000 80 chrIV:4357435-4357515 1.0000 80 chrIII:3650422-3650502 1.0000 80 chrI:5804374-5804454 1.0000 80 chrIII:6342214-6342294 1.0000 80 chrIII:9054909-9054989 1.0000 80 chrX:12666982-12667062 1.0000 80 chrI:7559654-7559734 1.0000 80 chrX:573421-573501 1.0000 80 chrV:14499276-14499356 1.0000 80 chrI:10733757-10733837 1.0000 80 chrX:2582349-2582429 1.0000 80 chrIV:2603851-2603931 1.0000 80 chrII:2638234-2638314 1.0000 80 chrIII:1905788-1905868 1.0000 80 chrIII:1284712-1284792 1.0000 80 chrX:12869676-12869756 1.0000 80 chrIII:2076850-2076930 1.0000 80 chrIII:3030031-3030111 1.0000 80 chrIV:14797498-14797578 1.0000 80 chrX:7341045-7341125 1.0000 80 chrII:5338450-5338530 1.0000 80 chrX:15608790-15608870 1.0000 80 chrII:11719083-11719163 1.0000 80 chrII:9281819-9281899 1.0000 80 chrIV:7838986-7839066 1.0000 80 chrX:2234054-2234134 1.0000 80 chrX:6746742-6746822 1.0000 80 chrII:5572241-5572321 1.0000 80 chrX:4619730-4619810 1.0000 80 chrII:12023639-12023719 1.0000 80 chrII:11578462-11578542 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_skn-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/skn-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.296 C 0.196 G 0.197 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.296 C 0.196 G 0.197 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTCGMAA MEME-1 width = 8 sites = 100 llr = 819 E-value = 4.3e-077 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCGMAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:15aa pos.-specific C :::9:4:: probability G ::3:9::: matrix T aa71:1:: bits 2.4 2.1 1.9 * 1.6 ** ** ** Relative 1.4 ** ** ** Entropy 1.2 ** ** ** (11.8 bits) 0.9 ** ** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTCGAAA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGMAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:573421-573501 62 1.99e-05 AGATTTGAGA TTTCGCAA TGTGCTGATG chrI:7559654-7559734 66 1.99e-05 GTCATTCTTC TTTCGCAA TTTTTCT chrV:12261559-12261639 24 1.99e-05 ATAGACTATA TTTCGCAA TAGGGAATAG chrV:5081103-5081183 39 1.99e-05 TTAGGAAATA TTTCGCAA CAGTCAAAGG chrIII:4151786-4151866 26 1.99e-05 CCCTGTCGTA TTTCGCAA TCTTATCTCT chrIII:10202534-10202614 48 1.99e-05 AAATGTGCGA TTTCGCAA TACCCATCAC chrX:17138304-17138384 39 1.99e-05 ACAAATGTCA TTTCGCAA TTTGGGGAAT chrX:5714235-5714315 20 1.99e-05 AAAATACTAA TTTCGCAA TAAGTAATCC chrIII:3703523-3703603 44 1.99e-05 TGCATGCGCA TTTCGCAA GACTTCCATT chrX:2439907-2439987 47 1.99e-05 CATCAATACA TTTCGCAA TCGTCTGCAC chrI:3785903-3785983 63 1.99e-05 ATTTCGAGAA TTTCGCAA TACTCTTTTC chrII:8675523-8675603 57 1.99e-05 CAATATCCTA TTTCGCAA TAAATAAAGT chrII:9062704-9062784 51 1.99e-05 TTTAAAGAAA TTTCGCAA TATTGCTGAC chrIII:4242652-4242732 4 1.99e-05 ATA TTTCGCAA TAATTGTTCA chrIV:3520535-3520615 29 1.99e-05 CTCGAACCAA TTTCGCAA TTCTCCTACG chrV:16395312-16395392 44 1.99e-05 AAGATGTGGA TTTCGCAA TATTTCGCAA chrV:12101003-12101083 14 1.99e-05 CTCGGTATTA TTTCGCAA TTTTTCCAAT chrIII:11149655-11149735 56 1.99e-05 GGCATGGCAA TTTCGCAA CTAAAATATG chrV:5085229-5085309 56 1.99e-05 TTGGAGAGAA TTTCGCAA TAAATCAAAA chrV:5087188-5087268 42 1.99e-05 TTGGAGAGAA TTTCGCAA TAGACCAAAA chrX:2085642-2085722 58 1.99e-05 TTACGAGCGA TTTCGCAA TAGGGGGCAA chrI:13391261-13391341 28 1.99e-05 TCATCAGAAA TTTCGCAA TAGTAGGCGG chrIV:8377064-8377144 69 1.99e-05 TGTTCTCTTT TTTCGCAA CATT chrX:2014051-2014131 71 1.99e-05 CCACCAGTTG TTTCGCAA GA chrIII:9912682-9912762 36 1.99e-05 GTCAGAGAGG TTTCGCAA GAAATATTTC chrIV:2711443-2711523 61 1.99e-05 TATCGAAAAA TTTCGCAA CCACTGTGAT chrX:7815387-7815467 55 1.99e-05 GTCTTGCGAA TTTCGCAA CTTTTCATGA chrII:15173361-15173441 24 1.99e-05 GTTCTAATTA TTTCGCAA CGAGCCTCGA chrII:14290971-14291051 46 1.99e-05 AATCACAAAA TTTCGCAA GTGGGTAATA chrIV:12034137-12034217 50 1.99e-05 CTTTTTTCGA TTTCGCAA CTCTCGCAAC chrV:20414072-20414152 43 5.01e-05 GTATGAAATA TTTCGAAA ATTGACCTAA chrX:6836274-6836354 62 5.01e-05 CACAAAAACA TTTCGAAA TCATACGAGT chrII:8143719-8143799 44 5.01e-05 TTTGACAGTA TTTCGAAA TAATGATGAC chrI:10689498-10689578 57 5.01e-05 GTAAAAAGTG TTTCGAAA TATAAAACAC chrX:4521990-4522070 72 5.01e-05 TGTCTAGGTA TTTCGAAA T chrV:10255301-10255381 27 5.01e-05 TTTGGAAATG TTTCGAAA TGTTCAAGTG chrV:10925790-10925870 73 5.01e-05 AATGGAAAGA TTTCGAAA chrII:4854868-4854948 59 5.01e-05 ATTCCTCGAT TTTCGAAA CGAAATAGTT chrIII:12551527-12551607 31 5.01e-05 TTACGAACAT TTTCGAAA CTATTCGAAA chrII:31707-31787 51 5.01e-05 ATTTTTTCGA TTTCGAAA TCGATTTCAA chrX:602941-603021 35 5.01e-05 CACTAACACA TTTCGAAA GTCATCACGG chrIII:3879523-3879603 39 5.01e-05 ATTTACTGTA TTTCGAAA TATTTCGCCA chrX:2641255-2641335 42 5.01e-05 TTGATCATGA TTTCGAAA TAGAGATAAT chrV:10709558-10709638 21 5.01e-05 AATAACATGA TTTCGAAA TGTGTCATCA chrIII:5581210-5581290 64 6.27e-05 ATGAGTAAAA TTGCGCAA TGTGATAGA chrX:10877490-10877570 29 6.27e-05 TTGGATGGTA TTGCGCAA TACTACTCAA chrII:11578462-11578542 42 8.18e-05 GCAAAGGCGA TTGCGAAA TCAAGTCATA chrII:9281819-9281899 42 8.18e-05 GAAAAGATGA TTGCGAAA TGTTTTCCCC chrIII:5163106-5163186 40 8.18e-05 GAAAAAAACA TTGCGAAA TTCAACACAA chrIII:8355224-8355304 41 8.18e-05 CGGCAAAACA TTGCGAAA TTTCGGAATA chrV:2264594-2264674 28 8.18e-05 GAGTGAACAA TTGCGAAA TGCTTGAGTG chrI:8027927-8028007 26 8.18e-05 ACAAAATGGG TTGCGAAA TGCAAAAAAT chrV:7955308-7955388 27 8.18e-05 ACGTGTGAAG TTGCGAAA TACGAATACA chrI:9248840-9248920 57 8.18e-05 TTTGGAAACG TTGCGAAA TTTTGCCTCT chrV:3803521-3803601 46 8.18e-05 CGAAAATATG TTGCGAAA TTGGGAGAGG chrIV:11006545-11006625 32 8.18e-05 TCTAGGTAGA TTGCGAAA TACCCAAAGC chrIII:9956801-9956881 52 8.18e-05 GCAACCCGAA TTGCGAAA TCGAGAGGGG chrIII:4204259-4204339 53 8.18e-05 CGGAGTGTCG TTGCGAAA AAAATCTTTT chrI:8664866-8664946 48 8.18e-05 ATCATCCCCG TTGCGAAA TTTACTCTAA chrIII:13716485-13716565 37 8.18e-05 AAGACATTTA TTGCGAAA TATGATGACT chrII:12095195-12095275 41 8.18e-05 CAAAAATTGG TTGCGAAA CAAGATTTTT chrX:8286309-8286389 67 8.18e-05 ATTCAAACTA TTGCGAAA TATCAA chrV:5131576-5131656 5 8.18e-05 CAAA TTGCGAAA TCTTTTTTCC chrII:220734-220814 65 8.18e-05 ATTCGGAAAA TTGCGAAA TTTTTGTT chrV:2057490-2057570 22 8.18e-05 CGTTTCCAAA TTGCGAAA TTTAGGCTCC chrIII:2076850-2076930 65 1.13e-04 TTTCAACATA TTTCGTAA TATTTCAA chrIII:1284712-1284792 55 1.13e-04 AAAATGCCTA TTTCGTAA CATTGCATAT chrX:1121716-1121796 35 1.13e-04 AGCTTTTCAG TTTCGTAA TAGTCTAAGG chrIII:1308338-1308418 30 1.13e-04 TGTACACATA TTTCGTAA CATTGCATGT chrIV:6622289-6622369 60 1.13e-04 CCGTTCCCTA TTTCGTAA TCTTTTTCTC chrX:4342895-4342975 16 1.13e-04 TGTAAGTGTA TTTCGTAA TTTTTCTAAT chrI:9862710-9862790 59 1.13e-04 GGGTGAAATA TTTCGTAA TATTTTATCA chrX:536532-536612 43 1.13e-04 CGGTGAAATA TTTCGTAA TTTGCATGAC chrI:12040276-12040356 50 1.33e-04 TTTTGAAAAA TTGCGTAA AGAATTTTCT chrX:9550112-9550192 72 1.33e-04 TGTCATGTTG TTGCGTAA G chrIII:9054909-9054989 36 2.11e-04 TGCCGGGCTA TTTCACAA TTTGCGCTCG chrX:14510530-14510610 23 2.11e-04 GGGCGCAATA TTACGAAA TGCAAAAACA chrX:1026954-1027034 17 2.11e-04 ACTACCTTCT TTTCACAA TATGATAAAT chrX:9705737-9705817 48 2.11e-04 GCGATGAAGG TTACGAAA TAATACAAGT chrIV:4097099-4097179 64 2.11e-04 AAATGGAGGA TTACGAAA TTTGTGGCA chrIV:10003548-10003628 70 2.11e-04 GCCTGAAATC TTACGAAA TTT chrIV:6522470-6522550 1 2.11e-04 . TTTCACAA TTTTAATTCA chrV:5018908-5018988 24 2.11e-04 TATCTTTCAA TTTCACAA CCTCAATTTG chrI:7763697-7763777 2 2.11e-04 G TTACGAAA TCAGGTTTAC chrX:600873-600953 67 2.88e-04 TCATTCGATC TTTCAAAA TTATTG chrV:8285819-8285899 2 2.88e-04 C TTTCAAAA TACGAAAAAG chrIII:1243382-1243462 60 2.88e-04 TCTTGCCTCG TTTTGCAA TATTGCCAAA chrI:3908580-3908660 68 2.88e-04 AAATCATCAT TTTTGCAA TTTTG chrII:5329734-5329814 57 3.36e-04 AGTTGTTAAG TTTTGAAA TGTTCTTCTC chrX:1080737-1080817 57 3.36e-04 GAAGAAATTA TTTTGAAA TAGCAGTTTG chrI:5744035-5744115 8 3.36e-04 CGAGAAA TTTTGAAA AGGATGATTT chrI:5804374-5804454 70 4.03e-04 AGTGGTTTGT TTGCAAAA ATC chrX:2316336-2316416 27 4.03e-04 CATGTGACCT TTGCAAAA CTCGGCGTGT chrI:12966442-12966522 3 4.03e-04 GA TTGCAAAA AAATGATGAC chrII:11761874-11761954 70 4.34e-04 TTGAAAGTTG TTGTGAAA AAA chrV:2250230-2250310 65 4.34e-04 ATCGTGTGTA TTGTGAAA TTGGTCAA chrIV:1167494-1167574 63 4.34e-04 TATTGTGATA TTGTGAAA TATGTTGTGA chrX:15441150-15441230 51 4.34e-04 ATCCCGGCAA TTGTGAAA TAATTGTGAT chrIII:10471099-10471179 2 4.54e-04 T TTTCCCAA CACATGATGA chrX:12666982-12667062 28 4.84e-04 TAGTTGTTTT TTTCCAAA ATCTTTCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGMAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:573421-573501 2e-05 61_[+1]_11 chrI:7559654-7559734 2e-05 65_[+1]_7 chrV:12261559-12261639 2e-05 23_[+1]_49 chrV:5081103-5081183 2e-05 38_[+1]_34 chrIII:4151786-4151866 2e-05 25_[+1]_47 chrIII:10202534-10202614 2e-05 47_[+1]_25 chrX:17138304-17138384 2e-05 38_[+1]_34 chrX:5714235-5714315 2e-05 19_[+1]_53 chrIII:3703523-3703603 2e-05 43_[+1]_29 chrX:2439907-2439987 2e-05 46_[+1]_26 chrI:3785903-3785983 2e-05 62_[+1]_10 chrII:8675523-8675603 2e-05 56_[+1]_16 chrII:9062704-9062784 2e-05 50_[+1]_22 chrIII:4242652-4242732 2e-05 3_[+1]_69 chrIV:3520535-3520615 2e-05 28_[+1]_44 chrV:16395312-16395392 2e-05 43_[+1]_29 chrV:12101003-12101083 2e-05 13_[+1]_59 chrIII:11149655-11149735 2e-05 55_[+1]_17 chrV:5085229-5085309 2e-05 55_[+1]_17 chrV:5087188-5087268 2e-05 41_[+1]_31 chrX:2085642-2085722 2e-05 57_[+1]_15 chrI:13391261-13391341 2e-05 27_[+1]_45 chrIV:8377064-8377144 2e-05 68_[+1]_4 chrX:2014051-2014131 2e-05 70_[+1]_2 chrIII:9912682-9912762 2e-05 35_[+1]_37 chrIV:2711443-2711523 2e-05 60_[+1]_12 chrX:7815387-7815467 2e-05 54_[+1]_18 chrII:15173361-15173441 2e-05 23_[+1]_49 chrII:14290971-14291051 2e-05 45_[+1]_27 chrIV:12034137-12034217 2e-05 49_[+1]_23 chrV:20414072-20414152 5e-05 42_[+1]_30 chrX:6836274-6836354 5e-05 61_[+1]_11 chrII:8143719-8143799 5e-05 43_[+1]_29 chrI:10689498-10689578 5e-05 56_[+1]_16 chrX:4521990-4522070 5e-05 71_[+1]_1 chrV:10255301-10255381 5e-05 26_[+1]_46 chrV:10925790-10925870 5e-05 72_[+1] chrII:4854868-4854948 5e-05 58_[+1]_14 chrIII:12551527-12551607 5e-05 30_[+1]_42 chrII:31707-31787 5e-05 50_[+1]_22 chrX:602941-603021 5e-05 34_[+1]_38 chrIII:3879523-3879603 5e-05 38_[+1]_34 chrX:2641255-2641335 5e-05 41_[+1]_31 chrV:10709558-10709638 5e-05 20_[+1]_52 chrIII:5581210-5581290 6.3e-05 63_[+1]_9 chrX:10877490-10877570 6.3e-05 28_[+1]_44 chrII:11578462-11578542 8.2e-05 41_[+1]_31 chrII:9281819-9281899 8.2e-05 41_[+1]_31 chrIII:5163106-5163186 8.2e-05 39_[+1]_33 chrIII:8355224-8355304 8.2e-05 40_[+1]_32 chrV:2264594-2264674 8.2e-05 27_[+1]_45 chrI:8027927-8028007 8.2e-05 25_[+1]_47 chrV:7955308-7955388 8.2e-05 26_[+1]_46 chrI:9248840-9248920 8.2e-05 56_[+1]_16 chrV:3803521-3803601 8.2e-05 45_[+1]_27 chrIV:11006545-11006625 8.2e-05 31_[+1]_41 chrIII:9956801-9956881 8.2e-05 51_[+1]_21 chrIII:4204259-4204339 8.2e-05 52_[+1]_20 chrI:8664866-8664946 8.2e-05 47_[+1]_25 chrIII:13716485-13716565 8.2e-05 36_[+1]_36 chrII:12095195-12095275 8.2e-05 40_[+1]_32 chrX:8286309-8286389 8.2e-05 66_[+1]_6 chrV:5131576-5131656 8.2e-05 4_[+1]_68 chrII:220734-220814 8.2e-05 64_[+1]_8 chrV:2057490-2057570 8.2e-05 21_[+1]_51 chrIII:2076850-2076930 0.00011 64_[+1]_8 chrIII:1284712-1284792 0.00011 54_[+1]_18 chrX:1121716-1121796 0.00011 34_[+1]_38 chrIII:1308338-1308418 0.00011 29_[+1]_43 chrIV:6622289-6622369 0.00011 59_[+1]_13 chrX:4342895-4342975 0.00011 15_[+1]_57 chrI:9862710-9862790 0.00011 58_[+1]_14 chrX:536532-536612 0.00011 42_[+1]_30 chrI:12040276-12040356 0.00013 49_[+1]_23 chrX:9550112-9550192 0.00013 71_[+1]_1 chrIII:9054909-9054989 0.00021 35_[+1]_37 chrX:14510530-14510610 0.00021 22_[+1]_50 chrX:1026954-1027034 0.00021 16_[+1]_56 chrX:9705737-9705817 0.00021 47_[+1]_25 chrIV:4097099-4097179 0.00021 63_[+1]_9 chrIV:10003548-10003628 0.00021 69_[+1]_3 chrIV:6522470-6522550 0.00021 [+1]_72 chrV:5018908-5018988 0.00021 23_[+1]_49 chrI:7763697-7763777 0.00021 1_[+1]_71 chrX:600873-600953 0.00029 66_[+1]_6 chrV:8285819-8285899 0.00029 1_[+1]_71 chrIII:1243382-1243462 0.00029 59_[+1]_13 chrI:3908580-3908660 0.00029 67_[+1]_5 chrII:5329734-5329814 0.00034 56_[+1]_16 chrX:1080737-1080817 0.00034 56_[+1]_16 chrI:5744035-5744115 0.00034 7_[+1]_65 chrI:5804374-5804454 0.0004 69_[+1]_3 chrX:2316336-2316416 0.0004 26_[+1]_46 chrI:12966442-12966522 0.0004 2_[+1]_70 chrII:11761874-11761954 0.00043 69_[+1]_3 chrV:2250230-2250310 0.00043 64_[+1]_8 chrIV:1167494-1167574 0.00043 62_[+1]_10 chrX:15441150-15441230 0.00043 50_[+1]_22 chrIII:10471099-10471179 0.00045 1_[+1]_71 chrX:12666982-12667062 0.00048 27_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGMAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCGMAA width=8 seqs=100 chrX:573421-573501 ( 62) TTTCGCAA 1 chrI:7559654-7559734 ( 66) TTTCGCAA 1 chrV:12261559-12261639 ( 24) TTTCGCAA 1 chrV:5081103-5081183 ( 39) TTTCGCAA 1 chrIII:4151786-4151866 ( 26) TTTCGCAA 1 chrIII:10202534-10202614 ( 48) TTTCGCAA 1 chrX:17138304-17138384 ( 39) TTTCGCAA 1 chrX:5714235-5714315 ( 20) TTTCGCAA 1 chrIII:3703523-3703603 ( 44) TTTCGCAA 1 chrX:2439907-2439987 ( 47) TTTCGCAA 1 chrI:3785903-3785983 ( 63) TTTCGCAA 1 chrII:8675523-8675603 ( 57) TTTCGCAA 1 chrII:9062704-9062784 ( 51) TTTCGCAA 1 chrIII:4242652-4242732 ( 4) TTTCGCAA 1 chrIV:3520535-3520615 ( 29) TTTCGCAA 1 chrV:16395312-16395392 ( 44) TTTCGCAA 1 chrV:12101003-12101083 ( 14) TTTCGCAA 1 chrIII:11149655-11149735 ( 56) TTTCGCAA 1 chrV:5085229-5085309 ( 56) TTTCGCAA 1 chrV:5087188-5087268 ( 42) TTTCGCAA 1 chrX:2085642-2085722 ( 58) TTTCGCAA 1 chrI:13391261-13391341 ( 28) TTTCGCAA 1 chrIV:8377064-8377144 ( 69) TTTCGCAA 1 chrX:2014051-2014131 ( 71) TTTCGCAA 1 chrIII:9912682-9912762 ( 36) TTTCGCAA 1 chrIV:2711443-2711523 ( 61) TTTCGCAA 1 chrX:7815387-7815467 ( 55) TTTCGCAA 1 chrII:15173361-15173441 ( 24) TTTCGCAA 1 chrII:14290971-14291051 ( 46) TTTCGCAA 1 chrIV:12034137-12034217 ( 50) TTTCGCAA 1 chrV:20414072-20414152 ( 43) TTTCGAAA 1 chrX:6836274-6836354 ( 62) TTTCGAAA 1 chrII:8143719-8143799 ( 44) TTTCGAAA 1 chrI:10689498-10689578 ( 57) TTTCGAAA 1 chrX:4521990-4522070 ( 72) TTTCGAAA 1 chrV:10255301-10255381 ( 27) TTTCGAAA 1 chrV:10925790-10925870 ( 73) TTTCGAAA 1 chrII:4854868-4854948 ( 59) TTTCGAAA 1 chrIII:12551527-12551607 ( 31) TTTCGAAA 1 chrII:31707-31787 ( 51) TTTCGAAA 1 chrX:602941-603021 ( 35) TTTCGAAA 1 chrIII:3879523-3879603 ( 39) TTTCGAAA 1 chrX:2641255-2641335 ( 42) TTTCGAAA 1 chrV:10709558-10709638 ( 21) TTTCGAAA 1 chrIII:5581210-5581290 ( 64) TTGCGCAA 1 chrX:10877490-10877570 ( 29) TTGCGCAA 1 chrII:11578462-11578542 ( 42) TTGCGAAA 1 chrII:9281819-9281899 ( 42) TTGCGAAA 1 chrIII:5163106-5163186 ( 40) TTGCGAAA 1 chrIII:8355224-8355304 ( 41) TTGCGAAA 1 chrV:2264594-2264674 ( 28) TTGCGAAA 1 chrI:8027927-8028007 ( 26) TTGCGAAA 1 chrV:7955308-7955388 ( 27) TTGCGAAA 1 chrI:9248840-9248920 ( 57) TTGCGAAA 1 chrV:3803521-3803601 ( 46) TTGCGAAA 1 chrIV:11006545-11006625 ( 32) TTGCGAAA 1 chrIII:9956801-9956881 ( 52) TTGCGAAA 1 chrIII:4204259-4204339 ( 53) TTGCGAAA 1 chrI:8664866-8664946 ( 48) TTGCGAAA 1 chrIII:13716485-13716565 ( 37) TTGCGAAA 1 chrII:12095195-12095275 ( 41) TTGCGAAA 1 chrX:8286309-8286389 ( 67) TTGCGAAA 1 chrV:5131576-5131656 ( 5) TTGCGAAA 1 chrII:220734-220814 ( 65) TTGCGAAA 1 chrV:2057490-2057570 ( 22) TTGCGAAA 1 chrIII:2076850-2076930 ( 65) TTTCGTAA 1 chrIII:1284712-1284792 ( 55) TTTCGTAA 1 chrX:1121716-1121796 ( 35) TTTCGTAA 1 chrIII:1308338-1308418 ( 30) TTTCGTAA 1 chrIV:6622289-6622369 ( 60) TTTCGTAA 1 chrX:4342895-4342975 ( 16) TTTCGTAA 1 chrI:9862710-9862790 ( 59) TTTCGTAA 1 chrX:536532-536612 ( 43) TTTCGTAA 1 chrI:12040276-12040356 ( 50) TTGCGTAA 1 chrX:9550112-9550192 ( 72) TTGCGTAA 1 chrIII:9054909-9054989 ( 36) TTTCACAA 1 chrX:14510530-14510610 ( 23) TTACGAAA 1 chrX:1026954-1027034 ( 17) TTTCACAA 1 chrX:9705737-9705817 ( 48) TTACGAAA 1 chrIV:4097099-4097179 ( 64) TTACGAAA 1 chrIV:10003548-10003628 ( 70) TTACGAAA 1 chrIV:6522470-6522550 ( 1) TTTCACAA 1 chrV:5018908-5018988 ( 24) TTTCACAA 1 chrI:7763697-7763777 ( 2) TTACGAAA 1 chrX:600873-600953 ( 67) TTTCAAAA 1 chrV:8285819-8285899 ( 2) TTTCAAAA 1 chrIII:1243382-1243462 ( 60) TTTTGCAA 1 chrI:3908580-3908660 ( 68) TTTTGCAA 1 chrII:5329734-5329814 ( 57) TTTTGAAA 1 chrX:1080737-1080817 ( 57) TTTTGAAA 1 chrI:5744035-5744115 ( 8) TTTTGAAA 1 chrI:5804374-5804454 ( 70) TTGCAAAA 1 chrX:2316336-2316416 ( 27) TTGCAAAA 1 chrI:12966442-12966522 ( 3) TTGCAAAA 1 chrII:11761874-11761954 ( 70) TTGTGAAA 1 chrV:2250230-2250310 ( 65) TTGTGAAA 1 chrIV:1167494-1167574 ( 63) TTGTGAAA 1 chrX:15441150-15441230 ( 51) TTGTGAAA 1 chrIII:10471099-10471179 ( 2) TTTCCCAA 1 chrX:12666982-12667062 ( 28) TTTCCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGMAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.64104 E= 4.3e-077 -1329 -1329 -1329 168 -1329 -1329 -1329 168 -256 -1329 61 106 -1329 222 -1329 -179 -172 -329 217 -1329 79 100 -1329 -164 176 -1329 -1329 -1329 176 -1329 -1329 -1329 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGMAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 4.3e-077 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.050000 0.000000 0.300000 0.650000 0.000000 0.910000 0.000000 0.090000 0.090000 0.020000 0.890000 0.000000 0.510000 0.390000 0.000000 0.100000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCGMAA MEME-1 regular expression -------------------------------------------------------------------------------- TT[TG]CG[AC]AA -------------------------------------------------------------------------------- Time 5.36 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGATGAC MEME-2 width = 8 sites = 66 llr = 587 E-value = 4.4e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGATGAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9::9::a1 pos.-specific C :::1:::6 probability G ::a::a:: matrix T :9::a::3 bits 2.4 * * 2.1 * * 1.9 * * 1.6 * *** Relative 1.4 ***** Entropy 1.2 ******* (12.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGATGAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12869676-12869756 26 1.91e-05 AGATGGATGG ATGATGAC AATTGATGCG chrI:10733757-10733837 7 1.91e-05 TTGTCG ATGATGAC AAATTTAAAG chrII:9160288-9160368 7 1.91e-05 TGCGAA ATGATGAC AAAACCTCAT chrII:8143719-8143799 54 1.91e-05 TTTCGAAATA ATGATGAC AATTCTTGGC chrX:6642866-6642946 16 1.91e-05 CAACACCGAA ATGATGAC AAATGAAAGA chrII:15185552-15185632 31 1.91e-05 CCAATGCCCA ATGATGAC AATTGCCTCG chrV:8285819-8285899 55 1.91e-05 CGTAGCACAA ATGATGAC AAAATGAACG chrX:1026954-1027034 60 1.91e-05 ATCTACTCAT ATGATGAC AAATAATCTT chrII:4881949-4882029 35 1.91e-05 TGTAGAGCAA ATGATGAC AAACTACAGA chrIV:10144658-10144738 34 1.91e-05 ACATAGAAAA ATGATGAC AACCCTTGAA chrIV:9259827-9259907 40 1.91e-05 CGCTGAGAAA ATGATGAC AATTCTGTGG chrI:12966442-12966522 13 1.91e-05 TTGCAAAAAA ATGATGAC GAAATAGCGG chrIII:11101432-11101512 26 1.91e-05 TTTGGAGAAA ATGATGAC AAAATGGGGA chrI:8985749-8985829 48 1.91e-05 ATTTCATAAC ATGATGAC TTAGATCACA chrIII:13716485-13716565 46 1.91e-05 ATTGCGAAAT ATGATGAC TAAAAAAGAG chrX:15441150-15441230 7 1.91e-05 TAAGAA ATGATGAC AATGGTATGT chrV:10770198-10770278 56 1.91e-05 CTCAGTTCGA ATGATGAC AATTTCACCG chrII:8483943-8484023 61 1.91e-05 GTGCACTAAA ATGATGAC AAATACGTAC chrIV:4085191-4085271 30 1.91e-05 ACACAGAAAA ATGATGAC GTTTTGTATA chrV:5018908-5018988 68 1.91e-05 AGATGTCTTT ATGATGAC AAATT chrIII:8923513-8923593 9 1.91e-05 GCCTCCAA ATGATGAC AAACATTATG chrIV:9064715-9064795 28 1.91e-05 TTTACGTTGC ATGATGAC AATTCATGTC chrII:220734-220814 46 1.91e-05 TATGACAAAA ATGATGAC AATTCGGAAA chrIII:11244463-11244543 14 1.91e-05 TTCTGAACAA ATGATGAC ATAAAAAACA chrIII:11836875-11836955 56 1.91e-05 CTCCCAAAAA ATGATGAC TATTCGAAGG chrV:11516336-11516416 17 1.91e-05 CACAGCGAAA ATGATGAC ATTGGAGTAA chrX:1456500-1456580 36 1.91e-05 TGCCTAGAAA ATGATGAC AAACCCGTGT chrX:4619730-4619810 61 4.94e-05 TTCGCGCGCG ATGATGAT GAAATAGTGT chrII:11719083-11719163 16 4.94e-05 AACATGACAG ATGATGAT AATGGGTGGT chrI:4847362-4847442 62 4.94e-05 AACCGACAAA ATGATGAT AAATAATACC chrI:3560106-3560186 56 4.94e-05 ACTGAAAGAA ATGATGAT ATTTATTTGT chrX:1394545-1394625 13 4.94e-05 CCCCCAACTT ATGATGAT ATTACATCAG chrX:11790886-11790966 28 4.94e-05 CTATGACTGT ATGATGAT GGGTGTGGTG chrIV:4788486-4788566 7 4.94e-05 GACCAA ATGATGAT ATTTCCAATG chrIII:13344670-13344750 41 4.94e-05 AGTAGCGGGA ATGATGAT AAAAAAGACA chrV:7413226-7413306 32 4.94e-05 TTGGGCGAAG ATGATGAT AGTGGTTTTG chrIII:4242652-4242732 21 4.94e-05 ATAATTGTTC ATGATGAT GAATTTATTT chrIII:6489086-6489166 51 4.94e-05 ACATTTGCGG ATGATGAT TTCTCAAAAT chrV:11570290-11570370 19 4.94e-05 ATGAATAAAA ATGATGAT TAAACGAAAA chrIII:12551527-12551607 13 4.94e-05 AAGTCAGAAA ATGATGAT TTACGAACAT chrII:6973686-6973766 56 4.94e-05 TCTGATGAAA ATGATGAT AATTAAGGTA chrV:8658082-8658162 53 4.94e-05 CGCCCTGCTG ATGATGAT ATGGGTAAAA chrIII:10471099-10471179 13 4.94e-05 TTCCCAACAC ATGATGAT TTTGGATTGG chrII:5378272-5378352 51 4.94e-05 ATCGCGTCAC ATGATGAT GAAAGTTTGT chrIV:12034137-12034217 4 4.94e-05 ATT ATGATGAT TATTCGAAGT chrX:2582349-2582429 58 6.20e-05 TTAGTTTTTG ATGCTGAC CTTCCGTGCC chrX:587843-587923 1 6.20e-05 . ATGCTGAC AAATATCTTA chrV:2250230-2250310 17 6.20e-05 TTCACCCTAA ATGCTGAC ATCAAGCAAC chrIII:8244192-8244272 13 6.20e-05 ATAACAGGAA ATGCTGAC AATGAGAGAC chrII:13618027-13618107 58 6.20e-05 CGTGGTAGCC ATGCTGAC AAACTAAGAA chrI:4140416-4140496 66 7.40e-05 CGAACTAAAA ACGATGAC AATTCCA chrX:15608790-15608870 36 1.03e-04 AAATGCTCAT ATGATGAA ACAAAGGGGG chrX:9705737-9705817 4 1.03e-04 GAA ATGATGAA AGAGAGTCCC chrIV:4097099-4097179 24 1.03e-04 ATTACGTGAG ATGATGAA ATTCCAAAAG chrIII:3306448-3306528 58 1.03e-04 CGAGCGGGGA ATGATGAA ATCATATTTC chrX:17138304-17138384 10 1.34e-04 CGGATGAAA GTGATGAC GTGACGGTCT chrV:6110687-6110767 31 1.34e-04 TCTAACCAAA AAGATGAC AACGTTTGCT chrV:13756843-13756923 59 1.34e-04 TTGCAGGAAA AAGATGAC AAAGTGAGAG chrII:14497995-14498075 65 1.34e-04 GTCTCACCAG AAGATGAC ATTAACAG chrX:16159487-16159567 4 1.34e-04 GAG GTGATGAC AAATGCGCGC chrIII:3922144-3922224 66 1.74e-04 ATTTTTGCCT TTGATGAC TTGTTGG chrII:10950208-10950288 53 1.74e-04 CCCTACGTTT TTGATGAC AATTGTGAGA chrV:5584527-5584607 2 1.99e-04 A AGGATGAC AAAATAAGCG chrIV:1167494-1167574 45 1.99e-04 TTTACTTTAT CTGATGAC TATTGTGATA chrIII:11039397-11039477 21 2.18e-04 CACTGCGAAT ACGATGAT TTTCACACTC chrI:4175050-4175130 50 2.18e-04 GCGCCTTTAA ACGATGAT ATTTCTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12869676-12869756 1.9e-05 25_[+2]_47 chrI:10733757-10733837 1.9e-05 6_[+2]_66 chrII:9160288-9160368 1.9e-05 6_[+2]_66 chrII:8143719-8143799 1.9e-05 53_[+2]_19 chrX:6642866-6642946 1.9e-05 15_[+2]_57 chrII:15185552-15185632 1.9e-05 30_[+2]_42 chrV:8285819-8285899 1.9e-05 54_[+2]_18 chrX:1026954-1027034 1.9e-05 59_[+2]_13 chrII:4881949-4882029 1.9e-05 34_[+2]_38 chrIV:10144658-10144738 1.9e-05 33_[+2]_39 chrIV:9259827-9259907 1.9e-05 39_[+2]_33 chrI:12966442-12966522 1.9e-05 12_[+2]_60 chrIII:11101432-11101512 1.9e-05 25_[+2]_47 chrI:8985749-8985829 1.9e-05 47_[+2]_25 chrIII:13716485-13716565 1.9e-05 45_[+2]_27 chrX:15441150-15441230 1.9e-05 6_[+2]_66 chrV:10770198-10770278 1.9e-05 55_[+2]_17 chrII:8483943-8484023 1.9e-05 60_[+2]_12 chrIV:4085191-4085271 1.9e-05 29_[+2]_43 chrV:5018908-5018988 1.9e-05 67_[+2]_5 chrIII:8923513-8923593 1.9e-05 8_[+2]_64 chrIV:9064715-9064795 1.9e-05 27_[+2]_45 chrII:220734-220814 1.9e-05 45_[+2]_27 chrIII:11244463-11244543 1.9e-05 13_[+2]_59 chrIII:11836875-11836955 1.9e-05 55_[+2]_17 chrV:11516336-11516416 1.9e-05 16_[+2]_56 chrX:1456500-1456580 1.9e-05 35_[+2]_37 chrX:4619730-4619810 4.9e-05 60_[+2]_12 chrII:11719083-11719163 4.9e-05 15_[+2]_57 chrI:4847362-4847442 4.9e-05 61_[+2]_11 chrI:3560106-3560186 4.9e-05 55_[+2]_17 chrX:1394545-1394625 4.9e-05 12_[+2]_60 chrX:11790886-11790966 4.9e-05 27_[+2]_45 chrIV:4788486-4788566 4.9e-05 6_[+2]_66 chrIII:13344670-13344750 4.9e-05 40_[+2]_32 chrV:7413226-7413306 4.9e-05 31_[+2]_41 chrIII:4242652-4242732 4.9e-05 20_[+2]_52 chrIII:6489086-6489166 4.9e-05 50_[+2]_22 chrV:11570290-11570370 4.9e-05 18_[+2]_54 chrIII:12551527-12551607 4.9e-05 12_[+2]_60 chrII:6973686-6973766 4.9e-05 55_[+2]_17 chrV:8658082-8658162 4.9e-05 52_[+2]_20 chrIII:10471099-10471179 4.9e-05 12_[+2]_60 chrII:5378272-5378352 4.9e-05 50_[+2]_22 chrIV:12034137-12034217 4.9e-05 3_[+2]_69 chrX:2582349-2582429 6.2e-05 57_[+2]_15 chrX:587843-587923 6.2e-05 [+2]_72 chrV:2250230-2250310 6.2e-05 16_[+2]_56 chrIII:8244192-8244272 6.2e-05 12_[+2]_60 chrII:13618027-13618107 6.2e-05 57_[+2]_15 chrI:4140416-4140496 7.4e-05 65_[+2]_7 chrX:15608790-15608870 0.0001 35_[+2]_37 chrX:9705737-9705817 0.0001 3_[+2]_69 chrIV:4097099-4097179 0.0001 23_[+2]_49 chrIII:3306448-3306528 0.0001 57_[+2]_15 chrX:17138304-17138384 0.00013 9_[+2]_63 chrV:6110687-6110767 0.00013 30_[+2]_42 chrV:13756843-13756923 0.00013 58_[+2]_14 chrII:14497995-14498075 0.00013 64_[+2]_8 chrX:16159487-16159567 0.00013 3_[+2]_69 chrIII:3922144-3922224 0.00017 65_[+2]_7 chrII:10950208-10950288 0.00017 52_[+2]_20 chrV:5584527-5584607 0.0002 1_[+2]_71 chrIV:1167494-1167574 0.0002 44_[+2]_28 chrIII:11039397-11039477 0.00022 20_[+2]_52 chrI:4175050-4175130 0.00022 49_[+2]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGATGAC width=8 seqs=66 chrX:12869676-12869756 ( 26) ATGATGAC 1 chrI:10733757-10733837 ( 7) ATGATGAC 1 chrII:9160288-9160368 ( 7) ATGATGAC 1 chrII:8143719-8143799 ( 54) ATGATGAC 1 chrX:6642866-6642946 ( 16) ATGATGAC 1 chrII:15185552-15185632 ( 31) ATGATGAC 1 chrV:8285819-8285899 ( 55) ATGATGAC 1 chrX:1026954-1027034 ( 60) ATGATGAC 1 chrII:4881949-4882029 ( 35) ATGATGAC 1 chrIV:10144658-10144738 ( 34) ATGATGAC 1 chrIV:9259827-9259907 ( 40) ATGATGAC 1 chrI:12966442-12966522 ( 13) ATGATGAC 1 chrIII:11101432-11101512 ( 26) ATGATGAC 1 chrI:8985749-8985829 ( 48) ATGATGAC 1 chrIII:13716485-13716565 ( 46) ATGATGAC 1 chrX:15441150-15441230 ( 7) ATGATGAC 1 chrV:10770198-10770278 ( 56) ATGATGAC 1 chrII:8483943-8484023 ( 61) ATGATGAC 1 chrIV:4085191-4085271 ( 30) ATGATGAC 1 chrV:5018908-5018988 ( 68) ATGATGAC 1 chrIII:8923513-8923593 ( 9) ATGATGAC 1 chrIV:9064715-9064795 ( 28) ATGATGAC 1 chrII:220734-220814 ( 46) ATGATGAC 1 chrIII:11244463-11244543 ( 14) ATGATGAC 1 chrIII:11836875-11836955 ( 56) ATGATGAC 1 chrV:11516336-11516416 ( 17) ATGATGAC 1 chrX:1456500-1456580 ( 36) ATGATGAC 1 chrX:4619730-4619810 ( 61) ATGATGAT 1 chrII:11719083-11719163 ( 16) ATGATGAT 1 chrI:4847362-4847442 ( 62) ATGATGAT 1 chrI:3560106-3560186 ( 56) ATGATGAT 1 chrX:1394545-1394625 ( 13) ATGATGAT 1 chrX:11790886-11790966 ( 28) ATGATGAT 1 chrIV:4788486-4788566 ( 7) ATGATGAT 1 chrIII:13344670-13344750 ( 41) ATGATGAT 1 chrV:7413226-7413306 ( 32) ATGATGAT 1 chrIII:4242652-4242732 ( 21) ATGATGAT 1 chrIII:6489086-6489166 ( 51) ATGATGAT 1 chrV:11570290-11570370 ( 19) ATGATGAT 1 chrIII:12551527-12551607 ( 13) ATGATGAT 1 chrII:6973686-6973766 ( 56) ATGATGAT 1 chrV:8658082-8658162 ( 53) ATGATGAT 1 chrIII:10471099-10471179 ( 13) ATGATGAT 1 chrII:5378272-5378352 ( 51) ATGATGAT 1 chrIV:12034137-12034217 ( 4) ATGATGAT 1 chrX:2582349-2582429 ( 58) ATGCTGAC 1 chrX:587843-587923 ( 1) ATGCTGAC 1 chrV:2250230-2250310 ( 17) ATGCTGAC 1 chrIII:8244192-8244272 ( 13) ATGCTGAC 1 chrII:13618027-13618107 ( 58) ATGCTGAC 1 chrI:4140416-4140496 ( 66) ACGATGAC 1 chrX:15608790-15608870 ( 36) ATGATGAA 1 chrX:9705737-9705817 ( 4) ATGATGAA 1 chrIV:4097099-4097179 ( 24) ATGATGAA 1 chrIII:3306448-3306528 ( 58) ATGATGAA 1 chrX:17138304-17138384 ( 10) GTGATGAC 1 chrV:6110687-6110767 ( 31) AAGATGAC 1 chrV:13756843-13756923 ( 59) AAGATGAC 1 chrII:14497995-14498075 ( 65) AAGATGAC 1 chrX:16159487-16159567 ( 4) GTGATGAC 1 chrIII:3922144-3922224 ( 66) TTGATGAC 1 chrII:10950208-10950288 ( 53) TTGATGAC 1 chrV:5584527-5584607 ( 2) AGGATGAC 1 chrIV:1167494-1167574 ( 45) CTGATGAC 1 chrIII:11039397-11039477 ( 21) ACGATGAT 1 chrI:4175050-4175130 ( 50) ACGATGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.14152 E= 4.4e-052 164 -369 -270 -336 -270 -210 -370 152 -1269 -1269 234 -1269 164 -137 -1269 -1269 -1269 -1269 -1269 168 -1269 -1269 234 -1269 176 -1269 -1269 -1269 -229 170 -1269 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 4.4e-052 0.924242 0.015152 0.030303 0.030303 0.045455 0.045455 0.015152 0.893939 0.000000 0.000000 1.000000 0.000000 0.924242 0.075758 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.060606 0.636364 0.000000 0.303030 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGATGAC MEME-2 regular expression -------------------------------------------------------------------------------- ATGATGA[CT] -------------------------------------------------------------------------------- Time 9.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTCATCA MEME-3 width = 8 sites = 62 llr = 541 E-value = 1.7e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCATCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1::a::9 pos.-specific C :1:a::a: probability G :7:::1:1 matrix T 91a::9:: bits 2.4 * 2.1 * * 1.9 * * 1.6 *** * Relative 1.4 * *** * Entropy 1.2 * *** ** (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTCATCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCATCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7341045-7341125 19 1.99e-05 AACAATAAAA TGTCATCA TTTTTTGACC chrI:5804374-5804454 34 1.99e-05 AAGCGTATTT TGTCATCA TTTTGTGCGA chrIV:7550001-7550081 2 1.99e-05 T TGTCATCA AAAACACATA chrI:7601427-7601507 40 1.99e-05 ATTTCTTATT TGTCATCA TTTTTGCATT chrX:600873-600953 52 1.99e-05 CACATGAATA TGTCATCA TTCGATCTTT chrII:9231388-9231468 60 1.99e-05 CACTATCAAT TGTCATCA TGTAGAAAAC chrX:5714235-5714315 63 1.99e-05 TTACATTGGT TGTCATCA TTTCTATCTT chrI:7596928-7597008 1 1.99e-05 . TGTCATCA CAAAACATAC chrV:16095001-16095081 27 1.99e-05 AACCTCTTTT TGTCATCA ACAACGTTAG chrIII:9747316-9747396 2 1.99e-05 T TGTCATCA AAGGTGCATG chrIII:3922144-3922224 15 1.99e-05 TATCACTAAT TGTCATCA TTTTCATTTC chrIV:4209782-4209862 21 1.99e-05 TGTGAGTATT TGTCATCA TTTTGTCACT chrIV:1455130-1455210 4 1.99e-05 ATT TGTCATCA TGGCTACGCG chrV:19672545-19672625 16 1.99e-05 ACTCATTTTT TGTCATCA TTTTTCTATT chrIII:9059109-9059189 21 1.99e-05 AACAACTTTT TGTCATCA TTTTCGTGCT chrII:4908388-4908468 55 1.99e-05 GTCGCTCCAT TGTCATCA TTATATCGTC chrIV:9051164-9051244 34 1.99e-05 TTAAGATATT TGTCATCA TCTCGTTTTA chrII:13618027-13618107 15 1.99e-05 ACATCAAAAT TGTCATCA TTTTACGGGA chrV:5017879-5017959 3 1.99e-05 TT TGTCATCA TTTCAATATT chrI:6740074-6740154 29 1.99e-05 TATAGACAAT TGTCATCA TTTTTACCGC chrIV:10142077-10142157 18 1.99e-05 TTTTTGCTTT TGTCATCA TTTTTCCACG chrV:10709558-10709638 31 1.99e-05 TTTCGAAATG TGTCATCA CTTTTGCAGA chrII:7060968-7061048 22 1.99e-05 ATTTGTGTTT TGTCATCA TTATAGGAAA chrII:8138158-8138238 54 1.99e-05 GGCTGCGTTT TGTCATCA TGTAGAGGCA chrII:9038888-9038968 64 1.99e-05 TCTTTGCAAT TGTCATCA TGAGCTAGT chrIV:17268228-17268308 14 1.99e-05 TTGTGTGCTT TGTCATCA TTTTTCCGTC chrIII:8552273-8552353 62 1.99e-05 CAGAGATGTT TGTCATCA TTTCTGTCTT chrII:13624492-13624572 56 1.99e-05 CAACACCATT TGTCATCA TTTTTTGGAG chrX:591215-591295 46 1.99e-05 CTCAGTGTTT TGTCATCA TTTTTTCAGT chrI:10565998-10566078 52 3.26e-05 CGCCGCGAAT TGTCAGCA TCTCACTGCA chrX:763638-763718 46 3.26e-05 TCCTCTTTTT TGTCAGCA TTTTTCACCT chrIV:11316246-11316326 60 3.26e-05 TCCGAAGTTT TGTCAGCA TTTTCCGTTT chrII:15175331-15175411 25 3.26e-05 ACTCGATGTT TGTCAGCA TTTTCCAGAA chrII:5378272-5378352 30 3.26e-05 CCGCGACAAT TGTCAGCA AAAATCGCGT chrII:5572241-5572321 24 5.24e-05 TTCCTTGTTT TCTCATCA TTTCCTCCCG chrIII:4151786-4151866 41 5.24e-05 CAATCTTATC TCTCATCA CATTGAACAG chrIV:6622289-6622369 42 5.24e-05 TACACTATTT TCTCATCA CCGTTCCCTA chrIV:6522470-6522550 56 6.57e-05 ATCTGTTCCT TGTCATCG TTTTGCACCG chrV:2057490-2057570 71 6.57e-05 TCACAATGTT TGTCATCG TT chrX:12869676-12869756 50 9.72e-05 TGCGGAGAAT TTTCATCA TTTCTGATGT chrIII:8355224-8355304 59 9.72e-05 TTTCGGAATA TTTCATCA CTCGTCTCGT chrI:7598160-7598240 17 9.72e-05 GGGTCTTCTC TTTCATCA CTCAACACGC chrV:17859243-17859323 35 9.72e-05 TTTCGTCAGA TTTCATCA TTTTCACGGG chrX:11791508-11791588 57 9.72e-05 TCTGTAAGGA TTTCATCA CACACATGTC chrI:13391261-13391341 16 9.72e-05 ATATTTTTTT TTTCATCA GAAATTTCGC chrV:12409178-12409258 64 9.72e-05 CATCAAGATA TTTCATCA CTGGATGAT chrIV:9064715-9064795 42 1.10e-04 TGACAATTCA TGTCACCA TTTTATGATC chrIII:3030031-3030111 15 1.40e-04 tcttcatctt tatcatca tcgtcttctt chrI:2773906-2773986 7 1.40e-04 CGTAAT TATCATCA TATTCCCCTT chrV:7413226-7413306 56 1.40e-04 TTTGAACGAT TATCATCA TCTGTTCAGT chrII:7364226-7364306 60 1.40e-04 CGACATGCTT TATCATCA TTCTGCCAGC chrI:10689498-10689578 39 1.52e-04 CCGTAGGTGA CGTCATCA GTAAAAAGTG chrX:8286309-8286389 38 1.52e-04 TGTTAGCAGT CGTCATCA TTTTCTCGAA chrIV:6910224-6910304 27 1.71e-04 TTAAAGGCGC AGTCATCA TGCCGGCTGG chrV:7811933-7812013 16 1.71e-04 GGTCGCCCAA AGTCATCA TTTTCGCGGC chrV:6206657-6206737 11 1.97e-04 TATCATGTAT TGTCATCC TATTTCGTCA chrIV:14797498-14797578 68 2.05e-04 GCGCCTTTGA TGTCAGCG GTCGT chrX:2234054-2234134 70 2.19e-04 CAGCATGCTC TCTCATCG GCG chrX:7143656-7143736 17 2.19e-04 CTTATATAGT TCTCATCG ATCGGCACGA chrI:1049244-1049324 18 2.59e-04 TAACACTATT TGTCATGA TTCTTACGTC chrI:10733757-10733837 51 2.92e-04 AGCGGGAATA TCTCACCA CGCACGAGTT chrI:4175050-4175130 1 2.92e-04 . TCTCACCA CGGCCAGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCATCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7341045-7341125 2e-05 18_[+3]_54 chrI:5804374-5804454 2e-05 33_[+3]_39 chrIV:7550001-7550081 2e-05 1_[+3]_71 chrI:7601427-7601507 2e-05 39_[+3]_33 chrX:600873-600953 2e-05 51_[+3]_21 chrII:9231388-9231468 2e-05 59_[+3]_13 chrX:5714235-5714315 2e-05 62_[+3]_10 chrI:7596928-7597008 2e-05 [+3]_72 chrV:16095001-16095081 2e-05 26_[+3]_46 chrIII:9747316-9747396 2e-05 1_[+3]_71 chrIII:3922144-3922224 2e-05 14_[+3]_58 chrIV:4209782-4209862 2e-05 20_[+3]_52 chrIV:1455130-1455210 2e-05 3_[+3]_69 chrV:19672545-19672625 2e-05 15_[+3]_57 chrIII:9059109-9059189 2e-05 20_[+3]_52 chrII:4908388-4908468 2e-05 54_[+3]_18 chrIV:9051164-9051244 2e-05 33_[+3]_39 chrII:13618027-13618107 2e-05 14_[+3]_58 chrV:5017879-5017959 2e-05 2_[+3]_70 chrI:6740074-6740154 2e-05 28_[+3]_44 chrIV:10142077-10142157 2e-05 17_[+3]_55 chrV:10709558-10709638 2e-05 30_[+3]_42 chrII:7060968-7061048 2e-05 21_[+3]_51 chrII:8138158-8138238 2e-05 53_[+3]_19 chrII:9038888-9038968 2e-05 63_[+3]_9 chrIV:17268228-17268308 2e-05 13_[+3]_59 chrIII:8552273-8552353 2e-05 61_[+3]_11 chrII:13624492-13624572 2e-05 55_[+3]_17 chrX:591215-591295 2e-05 45_[+3]_27 chrI:10565998-10566078 3.3e-05 51_[+3]_21 chrX:763638-763718 3.3e-05 45_[+3]_27 chrIV:11316246-11316326 3.3e-05 59_[+3]_13 chrII:15175331-15175411 3.3e-05 24_[+3]_48 chrII:5378272-5378352 3.3e-05 29_[+3]_43 chrII:5572241-5572321 5.2e-05 23_[+3]_49 chrIII:4151786-4151866 5.2e-05 40_[+3]_32 chrIV:6622289-6622369 5.2e-05 41_[+3]_31 chrIV:6522470-6522550 6.6e-05 55_[+3]_17 chrV:2057490-2057570 6.6e-05 70_[+3]_2 chrX:12869676-12869756 9.7e-05 49_[+3]_23 chrIII:8355224-8355304 9.7e-05 58_[+3]_14 chrI:7598160-7598240 9.7e-05 16_[+3]_56 chrV:17859243-17859323 9.7e-05 34_[+3]_38 chrX:11791508-11791588 9.7e-05 56_[+3]_16 chrI:13391261-13391341 9.7e-05 15_[+3]_57 chrV:12409178-12409258 9.7e-05 63_[+3]_9 chrIV:9064715-9064795 0.00011 41_[+3]_31 chrIII:3030031-3030111 0.00014 14_[+3]_58 chrI:2773906-2773986 0.00014 6_[+3]_66 chrV:7413226-7413306 0.00014 55_[+3]_17 chrII:7364226-7364306 0.00014 59_[+3]_13 chrI:10689498-10689578 0.00015 38_[+3]_34 chrX:8286309-8286389 0.00015 37_[+3]_35 chrIV:6910224-6910304 0.00017 26_[+3]_46 chrV:7811933-7812013 0.00017 15_[+3]_57 chrV:6206657-6206737 0.0002 10_[+3]_62 chrIV:14797498-14797578 0.00021 67_[+3]_5 chrX:2234054-2234134 0.00022 69_[+3]_3 chrX:7143656-7143736 0.00022 16_[+3]_56 chrI:1049244-1049324 0.00026 17_[+3]_55 chrI:10733757-10733837 0.00029 50_[+3]_22 chrI:4175050-4175130 0.00029 [+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCATCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCATCA width=8 seqs=62 chrX:7341045-7341125 ( 19) TGTCATCA 1 chrI:5804374-5804454 ( 34) TGTCATCA 1 chrIV:7550001-7550081 ( 2) TGTCATCA 1 chrI:7601427-7601507 ( 40) TGTCATCA 1 chrX:600873-600953 ( 52) TGTCATCA 1 chrII:9231388-9231468 ( 60) TGTCATCA 1 chrX:5714235-5714315 ( 63) TGTCATCA 1 chrI:7596928-7597008 ( 1) TGTCATCA 1 chrV:16095001-16095081 ( 27) TGTCATCA 1 chrIII:9747316-9747396 ( 2) TGTCATCA 1 chrIII:3922144-3922224 ( 15) TGTCATCA 1 chrIV:4209782-4209862 ( 21) TGTCATCA 1 chrIV:1455130-1455210 ( 4) TGTCATCA 1 chrV:19672545-19672625 ( 16) TGTCATCA 1 chrIII:9059109-9059189 ( 21) TGTCATCA 1 chrII:4908388-4908468 ( 55) TGTCATCA 1 chrIV:9051164-9051244 ( 34) TGTCATCA 1 chrII:13618027-13618107 ( 15) TGTCATCA 1 chrV:5017879-5017959 ( 3) TGTCATCA 1 chrI:6740074-6740154 ( 29) TGTCATCA 1 chrIV:10142077-10142157 ( 18) TGTCATCA 1 chrV:10709558-10709638 ( 31) TGTCATCA 1 chrII:7060968-7061048 ( 22) TGTCATCA 1 chrII:8138158-8138238 ( 54) TGTCATCA 1 chrII:9038888-9038968 ( 64) TGTCATCA 1 chrIV:17268228-17268308 ( 14) TGTCATCA 1 chrIII:8552273-8552353 ( 62) TGTCATCA 1 chrII:13624492-13624572 ( 56) TGTCATCA 1 chrX:591215-591295 ( 46) TGTCATCA 1 chrI:10565998-10566078 ( 52) TGTCAGCA 1 chrX:763638-763718 ( 46) TGTCAGCA 1 chrIV:11316246-11316326 ( 60) TGTCAGCA 1 chrII:15175331-15175411 ( 25) TGTCAGCA 1 chrII:5378272-5378352 ( 30) TGTCAGCA 1 chrII:5572241-5572321 ( 24) TCTCATCA 1 chrIII:4151786-4151866 ( 41) TCTCATCA 1 chrIV:6622289-6622369 ( 42) TCTCATCA 1 chrIV:6522470-6522550 ( 56) TGTCATCG 1 chrV:2057490-2057570 ( 71) TGTCATCG 1 chrX:12869676-12869756 ( 50) TTTCATCA 1 chrIII:8355224-8355304 ( 59) TTTCATCA 1 chrI:7598160-7598240 ( 17) TTTCATCA 1 chrV:17859243-17859323 ( 35) TTTCATCA 1 chrX:11791508-11791588 ( 57) TTTCATCA 1 chrI:13391261-13391341 ( 16) TTTCATCA 1 chrV:12409178-12409258 ( 64) TTTCATCA 1 chrIV:9064715-9064795 ( 42) TGTCACCA 1 chrIII:3030031-3030111 ( 15) TATCATCA 1 chrI:2773906-2773986 ( 7) TATCATCA 1 chrV:7413226-7413306 ( 56) TATCATCA 1 chrII:7364226-7364306 ( 60) TATCATCA 1 chrI:10689498-10689578 ( 39) CGTCATCA 1 chrX:8286309-8286389 ( 38) CGTCATCA 1 chrIV:6910224-6910304 ( 27) AGTCATCA 1 chrV:7811933-7812013 ( 16) AGTCATCA 1 chrV:6206657-6206737 ( 11) TGTCATCC 1 chrIV:14797498-14797578 ( 68) TGTCAGCG 1 chrX:2234054-2234134 ( 70) TCTCATCG 1 chrX:7143656-7143736 ( 17) TCTCATCG 1 chrI:1049244-1049324 ( 18) TGTCATGA 1 chrI:10733757-10733837 ( 51) TCTCACCA 1 chrI:4175050-4175130 ( 1) TCTCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCATCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.90467 E= 1.7e-041 -320 -260 -1260 159 -220 -79 185 -146 -1260 -1260 -1260 168 -1260 235 -1260 -1260 176 -1260 -1260 -1260 -1260 -201 -103 146 -1260 233 -361 -1260 161 -360 -129 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCATCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.7e-041 0.032258 0.032258 0.000000 0.935484 0.064516 0.112903 0.709677 0.112903 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.048387 0.096774 0.854839 0.000000 0.983871 0.016129 0.000000 0.903226 0.016129 0.080645 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCATCA MEME-3 regular expression -------------------------------------------------------------------------------- TGTCATCA -------------------------------------------------------------------------------- Time 13.84 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-4 width = 8 sites = 25 llr = 263 E-value = 2.3e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:a:::a: pos.-specific C :::8:a:: probability G :a:1a::a matrix T :::1:::: bits 2.4 * * 2.1 * ** * 1.9 * ** * 1.6 *** **** Relative 1.4 ******** Entropy 1.2 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:2603851-2603931 34 7.62e-06 GGCATAGAAG AGACGCAG ACACACCTAC chrV:2264594-2264674 57 7.62e-06 GTTTAATGAG AGACGCAG GCAGGAGACT chrX:11472608-11472688 10 7.62e-06 TGCTGAGTG AGACGCAG ACGTAACTCA chrV:3803521-3803601 68 7.62e-06 GAGAGGGAGG AGACGCAG GTATG chrX:6836274-6836354 37 7.62e-06 TGCAAAGGGG AGACGCAG GCAGGTACAC chrX:1961072-1961152 44 7.62e-06 CAAAGGTGAG AGACGCAG ACGTAAAACG chrV:1285856-1285936 63 7.62e-06 GAGGAATGAG AGACGCAG ACGGTTTAGC chrV:1627415-1627495 19 7.62e-06 TAGTATGCCG AGACGCAG GCATAGAAAT chrI:10565998-10566078 19 7.62e-06 CCAACACGAG AGACGCAG ACACCGCGAC chrII:7364226-7364306 31 7.62e-06 ATACAATGTT AGACGCAG GCATATAGAC chrIII:1243382-1243462 4 7.62e-06 CCG AGACGCAG AGAAAAAGAG chrIII:11149655-11149735 21 7.62e-06 AAGAGAGAAG AGACGCAG AGGAACTGGA chrIV:8377064-8377144 46 7.62e-06 CGAGAGAAGT AGACGCAG ACATATGTTC chrX:1479323-1479403 21 7.62e-06 GAGAAGCTAG AGACGCAG ACTTCGCGGA chrV:5131576-5131656 44 7.62e-06 AAGTGGAAAG AGACGCAG GAGGCATAAC chrX:575252-575332 72 7.62e-06 TTGCACAGAC AGACGCAG A chrV:2057490-2057570 50 7.62e-06 GCCCACTAAG AGACGCAG AAATCACAAT chrV:6110687-6110767 3 1.53e-05 GC AGAGGCAG AAAGAAAGTG chrII:8138158-8138238 65 1.53e-05 GTCATCATGT AGAGGCAG CATTGGGG chrIV:7550001-7550081 29 2.54e-05 ACACACACCG GGACGCAG AACTGACCCG chrV:11516336-11516416 64 2.54e-05 ACAGCTGGAG AGACGCGG GCATCGTAG chrX:15617306-15617386 57 3.75e-05 AGAGCGGTAT AGATGCAG AAAGTGTTGA chrI:3908580-3908660 50 3.75e-05 TATTACGACA AGATGCAG AAATCATCAT chrX:2258491-2258571 62 6.04e-05 CGCGGCATCG AGACACAG GCAGCAAGTG chrV:2259880-2259960 36 6.04e-05 AGAATTATAG AGACGCAA ACGGCGGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:2603851-2603931 7.6e-06 33_[+4]_39 chrV:2264594-2264674 7.6e-06 56_[+4]_16 chrX:11472608-11472688 7.6e-06 9_[+4]_63 chrV:3803521-3803601 7.6e-06 67_[+4]_5 chrX:6836274-6836354 7.6e-06 36_[+4]_36 chrX:1961072-1961152 7.6e-06 43_[+4]_29 chrV:1285856-1285936 7.6e-06 62_[+4]_10 chrV:1627415-1627495 7.6e-06 18_[+4]_54 chrI:10565998-10566078 7.6e-06 18_[+4]_54 chrII:7364226-7364306 7.6e-06 30_[+4]_42 chrIII:1243382-1243462 7.6e-06 3_[+4]_69 chrIII:11149655-11149735 7.6e-06 20_[+4]_52 chrIV:8377064-8377144 7.6e-06 45_[+4]_27 chrX:1479323-1479403 7.6e-06 20_[+4]_52 chrV:5131576-5131656 7.6e-06 43_[+4]_29 chrX:575252-575332 7.6e-06 71_[+4]_1 chrV:2057490-2057570 7.6e-06 49_[+4]_23 chrV:6110687-6110767 1.5e-05 2_[+4]_70 chrII:8138158-8138238 1.5e-05 64_[+4]_8 chrIV:7550001-7550081 2.5e-05 28_[+4]_44 chrV:11516336-11516416 2.5e-05 63_[+4]_9 chrX:15617306-15617386 3.7e-05 56_[+4]_16 chrI:3908580-3908660 3.7e-05 49_[+4]_23 chrX:2258491-2258571 6e-05 61_[+4]_11 chrV:2259880-2259960 6e-05 35_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=25 chrIV:2603851-2603931 ( 34) AGACGCAG 1 chrV:2264594-2264674 ( 57) AGACGCAG 1 chrX:11472608-11472688 ( 10) AGACGCAG 1 chrV:3803521-3803601 ( 68) AGACGCAG 1 chrX:6836274-6836354 ( 37) AGACGCAG 1 chrX:1961072-1961152 ( 44) AGACGCAG 1 chrV:1285856-1285936 ( 63) AGACGCAG 1 chrV:1627415-1627495 ( 19) AGACGCAG 1 chrI:10565998-10566078 ( 19) AGACGCAG 1 chrII:7364226-7364306 ( 31) AGACGCAG 1 chrIII:1243382-1243462 ( 4) AGACGCAG 1 chrIII:11149655-11149735 ( 21) AGACGCAG 1 chrIV:8377064-8377144 ( 46) AGACGCAG 1 chrX:1479323-1479403 ( 21) AGACGCAG 1 chrV:5131576-5131656 ( 44) AGACGCAG 1 chrX:575252-575332 ( 72) AGACGCAG 1 chrV:2057490-2057570 ( 50) AGACGCAG 1 chrV:6110687-6110767 ( 3) AGAGGCAG 1 chrII:8138158-8138238 ( 65) AGAGGCAG 1 chrIV:7550001-7550081 ( 29) GGACGCAG 1 chrV:11516336-11516416 ( 64) AGACGCGG 1 chrX:15617306-15617386 ( 57) AGATGCAG 1 chrI:3908580-3908660 ( 50) AGATGCAG 1 chrX:2258491-2258571 ( 62) AGACACAG 1 chrV:2259880-2259960 ( 36) AGACGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 2.3e-019 170 -1129 -230 -1129 -1129 -1129 234 -1129 176 -1129 -1129 -1129 -1129 210 -130 -196 -288 -1129 228 -1129 -1129 235 -1129 -1129 170 -1129 -230 -1129 -288 -1129 228 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.3e-019 0.960000 0.000000 0.040000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.840000 0.080000 0.080000 0.040000 0.000000 0.960000 0.000000 0.000000 1.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.040000 0.000000 0.960000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 17.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGCRC MEME-5 width = 8 sites = 22 llr = 202 E-value = 4.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGCRC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :2:21:3: pos.-specific C :7:7:a:a probability G a:a:9:5: matrix T :::1::1: bits 2.4 * * * 2.1 * * * * 1.9 * * * * 1.6 * * ** * Relative 1.4 * * ** * Entropy 1.2 * **** * (13.2 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCRC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1905788-1905868 13 2.22e-06 TGTTAACTAG GCGCGCGC CTTGTTTAGA chrI:515283-515363 26 2.22e-06 GTTGTCGCGC GCGCGCGC CCGCACTGTT chrIII:11836875-11836955 39 2.22e-06 TTGAGAGAGC GCGCGCGC TCCCAAAAAA chrI:3908580-3908660 26 5.56e-06 TGCGCATTGG GCGCGCAC ACCGAATATT chrX:16159487-16159567 16 5.56e-06 GATGACAAAT GCGCGCAC ATTATTTTGT chrIV:2711443-2711523 36 8.92e-06 GTTTACAGGG GAGCGCGC TTGCAACTAT chrV:10770198-10770278 31 1.24e-05 TGGTCATAAA GCGCGCTC TACCGCACTC chrI:10565998-10566078 37 1.91e-05 ACACCGCGAC GCGCACGC CGCGAATTGT chrIV:4357435-4357515 56 2.64e-05 atgtgcgatg gagcgcac ttgccaaatt chrIII:188636-188716 59 2.64e-05 AAATTCCGCG GCGCGCCC TGTTTATCAT chrII:4854868-4854948 21 2.64e-05 GAGAAAAAGA GAGCGCAC CCACGTTCAC chrIV:14797498-14797578 54 2.99e-05 CCTCGAAACT GCGTGCGC CTTTGATGTC chrII:220734-220814 13 2.99e-05 AGAAAACGAG GCGTGCGC CTTTAAAAAT chrI:7559654-7559734 39 3.72e-05 AAAAGTTCGG GCGAGCAC GTTTGCAGGG chrIV:1455130-1455210 19 4.22e-05 TCATGGCTAC GCGCACAC TCACACTGTG chrII:4881949-4882029 13 5.10e-05 AGTCAACAAC GTGCGCGC AATGTGTAGA chrX:2316336-2316416 65 5.61e-05 TGTCCACGAG GAGAGCGC GATCTAGT chrI:4140416-4140496 48 5.61e-05 AAGAGAATTA GAGAGCGC CGAACTAAAA chrX:4619730-4619810 52 6.49e-05 CAACGTTGTT TCGCGCGC GATGATGATG chrIV:6522470-6522550 32 7.36e-05 ATTCTCAGCG GGGCGCAC TTTCATATCT chrII:15173361-15173441 43 7.36e-05 GAGCCTCGAC GCGAGCTC AAAAAGGATC chrIII:3650422-3650502 73 8.72e-05 TTTCTTCTCT GCGCACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCRC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1905788-1905868 2.2e-06 12_[+5]_60 chrI:515283-515363 2.2e-06 25_[+5]_47 chrIII:11836875-11836955 2.2e-06 38_[+5]_34 chrI:3908580-3908660 5.6e-06 25_[+5]_47 chrX:16159487-16159567 5.6e-06 15_[+5]_57 chrIV:2711443-2711523 8.9e-06 35_[+5]_37 chrV:10770198-10770278 1.2e-05 30_[+5]_42 chrI:10565998-10566078 1.9e-05 36_[+5]_36 chrIV:4357435-4357515 2.6e-05 55_[+5]_17 chrIII:188636-188716 2.6e-05 58_[+5]_14 chrII:4854868-4854948 2.6e-05 20_[+5]_52 chrIV:14797498-14797578 3e-05 53_[+5]_19 chrII:220734-220814 3e-05 12_[+5]_60 chrI:7559654-7559734 3.7e-05 38_[+5]_34 chrIV:1455130-1455210 4.2e-05 18_[+5]_54 chrII:4881949-4882029 5.1e-05 12_[+5]_60 chrX:2316336-2316416 5.6e-05 64_[+5]_8 chrI:4140416-4140496 5.6e-05 47_[+5]_25 chrX:4619730-4619810 6.5e-05 51_[+5]_21 chrIV:6522470-6522550 7.4e-05 31_[+5]_41 chrII:15173361-15173441 7.4e-05 42_[+5]_30 chrIII:3650422-3650502 8.7e-05 72_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCRC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGCRC width=8 seqs=22 chrIII:1905788-1905868 ( 13) GCGCGCGC 1 chrI:515283-515363 ( 26) GCGCGCGC 1 chrIII:11836875-11836955 ( 39) GCGCGCGC 1 chrI:3908580-3908660 ( 26) GCGCGCAC 1 chrX:16159487-16159567 ( 16) GCGCGCAC 1 chrIV:2711443-2711523 ( 36) GAGCGCGC 1 chrV:10770198-10770278 ( 31) GCGCGCTC 1 chrI:10565998-10566078 ( 37) GCGCACGC 1 chrIV:4357435-4357515 ( 56) GAGCGCAC 1 chrIII:188636-188716 ( 59) GCGCGCCC 1 chrII:4854868-4854948 ( 21) GAGCGCAC 1 chrIV:14797498-14797578 ( 54) GCGTGCGC 1 chrII:220734-220814 ( 13) GCGTGCGC 1 chrI:7559654-7559734 ( 39) GCGAGCAC 1 chrIV:1455130-1455210 ( 19) GCGCACAC 1 chrII:4881949-4882029 ( 13) GTGCGCGC 1 chrX:2316336-2316416 ( 65) GAGAGCGC 1 chrI:4140416-4140496 ( 48) GAGAGCGC 1 chrX:4619730-4619810 ( 52) TCGCGCGC 1 chrIV:6522470-6522550 ( 32) GGGCGCAC 1 chrII:15173361-15173441 ( 43) GCGAGCTC 1 chrIII:3650422-3650502 ( 73) GCGCACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCRC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 4.7e-001 -1110 -1110 228 -277 -38 180 -211 -277 -1110 -1110 234 -1110 -70 189 -1110 -177 -112 -1110 213 -1110 -1110 235 -1110 -1110 10 -210 134 -119 -1110 235 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCRC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.7e-001 0.000000 0.000000 0.954545 0.045455 0.227273 0.681818 0.045455 0.045455 0.000000 0.000000 1.000000 0.000000 0.181818 0.727273 0.000000 0.090909 0.136364 0.000000 0.863636 0.000000 0.000000 1.000000 0.000000 0.000000 0.318182 0.045455 0.500000 0.136364 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCRC MEME-5 regular expression -------------------------------------------------------------------------------- G[CA]GCGC[GA]C -------------------------------------------------------------------------------- Time 20.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1420684-1420764 1.96e-01 80 chrX:591215-591295 2.04e-02 45_[+3(1.99e-05)]_27 chrX:1456500-1456580 6.86e-02 35_[+2(1.91e-05)]_37 chrX:536532-536612 6.58e-02 80 chrX:1419470-1419550 1.26e-01 80 chrV:6206657-6206737 9.41e-02 80 chrII:13624492-13624572 1.14e-02 55_[+3(1.99e-05)]_17 chrIII:8552273-8552353 1.26e-02 61_[+3(1.99e-05)]_11 chrV:11516336-11516416 9.56e-04 16_[+2(1.91e-05)]_39_[+4(2.54e-05)]_\ 9 chrV:2057490-2057570 4.57e-05 21_[+1(8.18e-05)]_20_[+4(7.62e-06)]_\ 13_[+3(6.57e-05)]_2 chrIV:17268228-17268308 1.02e-03 13_[+3(1.99e-05)]_59 chrII:9038888-9038968 4.12e-02 21_[+3(3.26e-05)]_34_[+3(1.99e-05)]_\ 9 chrII:8138158-8138238 2.95e-04 53_[+3(1.99e-05)]_3_[+4(1.53e-05)]_\ 8 chrII:7060968-7061048 9.41e-02 21_[+3(1.99e-05)]_51 chrV:10709558-10709638 7.41e-04 20_[+1(5.01e-05)]_2_[+3(1.99e-05)]_\ 42 chrIII:11836875-11836955 1.74e-04 36_[+5(2.22e-06)]_11_[+2(1.91e-05)]_\ 17 chrX:16159487-16159567 1.02e-03 15_[+5(5.56e-06)]_57 chrIII:13672768-13672848 6.53e-01 80 chrI:4140416-4140496 4.87e-03 47_[+5(5.61e-05)]_10_[+2(7.40e-05)]_\ 7 chrIII:11244463-11244543 1.01e-01 13_[+2(1.91e-05)]_59 chrIV:12034137-12034217 4.71e-03 3_[+2(4.94e-05)]_16_[+1(5.01e-05)]_\ 14_[+1(1.99e-05)]_23 chrII:14497995-14498075 3.69e-02 80 chrX:2641255-2641335 3.25e-02 41_[+1(5.01e-05)]_31 chrIV:10142077-10142157 4.75e-02 17_[+3(1.99e-05)]_55 chrII:5378272-5378352 5.05e-03 29_[+3(3.26e-05)]_13_[+2(4.94e-05)]_\ 22 chrII:15175331-15175411 6.32e-02 24_[+3(3.26e-05)]_48 chrIII:6146076-6146156 2.98e-01 80 chrV:2259880-2259960 1.02e-01 35_[+4(6.04e-05)]_37 chrI:7763697-7763777 4.27e-01 80 chrII:220734-220814 5.89e-05 12_[+5(2.99e-05)]_25_[+2(1.91e-05)]_\ 11_[+1(8.18e-05)]_8 chrIV:9064715-9064795 6.05e-03 27_[+2(1.91e-05)]_45 chrI:5744035-5744115 6.60e-02 80 chrIII:10471099-10471179 3.47e-03 12_[+2(4.94e-05)]_60 chrX:575252-575332 1.06e-02 71_[+4(7.62e-06)]_1 chrIII:8923513-8923593 2.42e-02 8_[+2(1.91e-05)]_64 chrII:14290971-14291051 4.10e-02 45_[+1(1.99e-05)]_27 chrV:5018908-5018988 5.83e-03 67_[+2(1.91e-05)]_5 chrV:8658082-8658162 1.23e-02 52_[+2(4.94e-05)]_20 chrIV:11316246-11316326 1.98e-01 59_[+3(3.26e-05)]_13 chrIV:4085191-4085271 1.73e-02 29_[+2(1.91e-05)]_43 chrX:2258491-2258571 6.13e-03 61_[+4(6.04e-05)]_11 chrI:6740074-6740154 1.21e-01 28_[+3(1.99e-05)]_44 chrII:8483943-8484023 2.12e-02 60_[+2(1.91e-05)]_12 chrV:5017879-5017959 7.76e-02 2_[+3(1.99e-05)]_70 chrIII:3879523-3879603 3.39e-02 38_[+1(5.01e-05)]_34 chrII:15173361-15173441 6.70e-04 23_[+1(1.99e-05)]_11_[+5(7.36e-05)]_\ 30 chrII:13618027-13618107 2.36e-03 14_[+3(1.99e-05)]_35_[+2(6.20e-05)]_\ 15 chrV:10770198-10770278 1.56e-04 30_[+5(1.24e-05)]_17_[+2(1.91e-05)]_\ 17 chrV:7811933-7812013 5.64e-02 80 chrIV:9051164-9051244 7.17e-03 33_[+3(1.99e-05)]_39 chrIV:6522470-6522550 6.24e-04 31_[+5(7.36e-05)]_16_[+3(6.57e-05)]_\ 17 chrI:1049244-1049324 2.82e-01 80 chrX:7815387-7815467 5.72e-03 54_[+1(1.99e-05)]_18 chrX:1080737-1080817 2.11e-02 80 chrV:12409178-12409258 4.76e-02 63_[+3(9.72e-05)]_9 chrV:5131576-5131656 7.91e-04 4_[+1(8.18e-05)]_31_[+4(7.62e-06)]_\ 29 chrIV:2711443-2711523 1.37e-04 35_[+5(8.92e-06)]_17_[+1(1.99e-05)]_\ 12 chrX:8286309-8286389 2.60e-02 66_[+1(8.18e-05)]_6 chrX:15441150-15441230 8.29e-03 6_[+2(1.91e-05)]_66 chrIII:3306448-3306528 6.17e-02 80 chrII:4908388-4908468 1.62e-01 54_[+3(1.99e-05)]_18 chrX:10877490-10877570 1.54e-02 28_[+1(6.27e-05)]_44 chrX:602941-603021 1.07e-02 34_[+1(5.01e-05)]_38 chrII:6973686-6973766 3.18e-02 55_[+2(4.94e-05)]_17 chrIII:9912682-9912762 2.93e-02 35_[+1(1.99e-05)]_37 chrII:10100050-10100130 2.38e-01 80 chrII:12095195-12095275 1.87e-01 40_[+1(8.18e-05)]_32 chrV:13464244-13464324 9.38e-01 80 chrX:2014051-2014131 4.69e-02 70_[+1(1.99e-05)]_2 chrII:31707-31787 9.90e-02 50_[+1(5.01e-05)]_22 chrIII:13716485-13716565 4.76e-03 36_[+1(8.18e-05)]_1_[+2(1.91e-05)]_\ 27 chrI:8985749-8985829 4.01e-03 47_[+2(1.91e-05)]_25 chrX:1479323-1479403 1.46e-02 20_[+4(7.62e-06)]_52 chrI:8664866-8664946 1.71e-02 47_[+1(8.18e-05)]_25 chrI:3908580-3908660 4.40e-06 25_[+5(5.56e-06)]_16_[+4(3.75e-05)]_\ 23 chrIII:12551527-12551607 2.91e-03 12_[+2(4.94e-05)]_10_[+1(5.01e-05)]_\ 42 chrIV:8377064-8377144 2.50e-05 45_[+4(7.62e-06)]_15_[+1(1.99e-05)]_\ 4 chrIII:8446447-8446527 8.11e-01 80 chrI:13391261-13391341 3.06e-03 15_[+3(9.72e-05)]_4_[+1(1.99e-05)]_\ 45 chrI:9862710-9862790 9.73e-03 80 chrII:5329734-5329814 5.00e-01 80 chrIII:11101432-11101512 3.55e-02 25_[+2(1.91e-05)]_47 chrX:2085642-2085722 8.89e-02 57_[+1(1.99e-05)]_15 chrX:7143656-7143736 2.24e-01 80 chrX:1044472-1044552 6.00e-02 80 chrIV:6910224-6910304 1.45e-02 80 chrX:11791508-11791588 1.03e-01 56_[+3(9.72e-05)]_16 chrV:11570290-11570370 6.94e-02 18_[+2(4.94e-05)]_54 chrI:12966442-12966522 5.51e-03 12_[+2(1.91e-05)]_60 chrIII:4204259-4204339 2.09e-01 52_[+1(8.18e-05)]_20 chrV:14773189-14773269 9.18e-01 80 chrV:5087188-5087268 3.70e-02 41_[+1(1.99e-05)]_31 chrV:5085229-5085309 3.60e-02 55_[+1(1.99e-05)]_17 chrIII:9059109-9059189 3.69e-02 20_[+3(1.99e-05)]_52 chrIV:10003548-10003628 1.13e-01 80 chrV:19672545-19672625 1.05e-01 15_[+3(1.99e-05)]_57 chrX:763638-763718 1.61e-01 45_[+3(3.26e-05)]_27 chrIV:9259827-9259907 5.09e-02 39_[+2(1.91e-05)]_33 chrX:4342895-4342975 1.95e-01 80 chrII:122204-122284 3.73e-01 80 chrIII:11149655-11149735 8.67e-04 20_[+4(7.62e-06)]_27_[+1(1.99e-05)]_\ 17 chrV:13756843-13756923 5.74e-02 80 chrV:12101003-12101083 4.21e-02 13_[+1(1.99e-05)]_59 chrIV:10144658-10144738 1.13e-01 33_[+2(1.91e-05)]_39 chrX:2572755-2572835 5.19e-01 80 chrII:6844389-6844469 4.87e-01 80 chrIII:6489086-6489166 2.82e-03 50_[+2(4.94e-05)]_22 chrV:16395312-16395392 4.23e-03 43_[+1(1.99e-05)]_2_[+1(1.99e-05)]_\ 19 chrIII:5581210-5581290 1.65e-01 30_[+1(8.18e-05)]_25_[+1(6.27e-05)]_\ 9 chrIV:1455130-1455210 4.94e-03 3_[+3(1.99e-05)]_7_[+5(4.22e-05)]_\ 54 chrII:4854868-4854948 3.02e-03 20_[+5(2.64e-05)]_30_[+1(5.01e-05)]_\ 14 chrIV:4097099-4097179 3.28e-02 80 chrI:6109771-6109851 5.61e-01 80 chrIV:3520535-3520615 1.35e-01 [+1(1.99e-05)]_20_[+1(1.99e-05)]_44 chrIV:4209782-4209862 8.89e-02 20_[+3(1.99e-05)]_52 chrIII:4242652-4242732 1.61e-03 3_[+1(1.99e-05)]_9_[+2(4.94e-05)]_\ 52 chrII:9062704-9062784 9.25e-03 50_[+1(1.99e-05)]_22 chrII:8750330-8750410 5.10e-01 80 chrII:10950208-10950288 1.24e-01 80 chrIV:6622289-6622369 1.71e-02 41_[+3(5.24e-05)]_31 chrV:6110687-6110767 3.89e-03 2_[+4(1.53e-05)]_70 chrI:4175050-4175130 1.36e-02 80 chrIII:1243382-1243462 9.50e-03 3_[+4(7.62e-06)]_69 chrII:8675523-8675603 4.41e-02 56_[+1(1.99e-05)]_16 chrIV:1167494-1167574 8.58e-02 80 chrX:9705737-9705817 1.43e-02 80 chrI:3785903-3785983 1.41e-01 12_[+1(1.99e-05)]_42_[+1(1.99e-05)]_\ 10 chrX:2439907-2439987 3.59e-02 46_[+1(1.99e-05)]_26 chrII:7364226-7364306 5.28e-03 30_[+4(7.62e-06)]_42 chrI:10565998-10566078 5.45e-06 18_[+4(7.62e-06)]_10_[+5(1.91e-05)]_\ 7_[+3(3.26e-05)]_21 chrV:17859243-17859323 3.76e-02 34_[+3(9.72e-05)]_38 chrII:4881949-4882029 2.98e-04 12_[+5(5.10e-05)]_14_[+2(1.91e-05)]_\ 38 chrV:1805905-1805985 3.56e-01 80 chrX:9550112-9550192 2.21e-01 80 chrIII:3922144-3922224 5.09e-03 14_[+3(1.99e-05)]_58 chrIII:9747316-9747396 1.14e-02 1_[+3(1.99e-05)]_71 chrX:1026954-1027034 1.01e-02 59_[+2(1.91e-05)]_13 chrIII:8490429-8490509 1.63e-01 80 chrIV:12331121-12331201 6.14e-01 80 chrIII:9956801-9956881 2.46e-02 51_[+1(8.18e-05)]_21 chrIII:8244192-8244272 1.70e-02 12_[+2(6.20e-05)]_60 chrV:10925790-10925870 4.56e-03 72_[+1(5.01e-05)] chrIV:11006545-11006625 4.83e-02 31_[+1(8.18e-05)]_41 chrV:10255301-10255381 4.01e-02 26_[+1(5.01e-05)]_46 chrI:7598160-7598240 1.60e-01 16_[+3(9.72e-05)]_56 chrV:8285819-8285899 9.95e-03 54_[+2(1.91e-05)]_18 chrX:2316336-2316416 1.14e-02 64_[+5(5.61e-05)]_8 chrV:16095001-16095081 2.78e-02 26_[+3(1.99e-05)]_46 chrII:15185552-15185632 4.38e-02 4_[+2(6.20e-05)]_18_[+2(1.91e-05)]_\ 42 chrX:2559572-2559652 5.19e-01 80 chrX:4521990-4522070 5.70e-02 71_[+1(5.01e-05)]_1 chrX:4490510-4490590 7.35e-01 80 chrV:1804200-1804280 9.81e-01 80 chrV:5584527-5584607 2.68e-02 80 chrI:515283-515363 2.95e-03 21_[+5(2.22e-06)]_51 chrIII:3703523-3703603 2.86e-02 43_[+1(1.99e-05)]_29 chrI:11934925-11935005 2.52e-01 80 chrI:7596928-7597008 5.29e-03 [+3(1.99e-05)]_72 chrV:12450600-12450680 6.34e-01 80 chrI:10689498-10689578 5.43e-03 56_[+1(5.01e-05)]_16 chrX:6642866-6642946 5.77e-02 15_[+2(1.91e-05)]_57 chrX:5714235-5714315 1.44e-03 19_[+1(1.99e-05)]_35_[+3(1.99e-05)]_\ 10 chrV:7413226-7413306 7.08e-03 31_[+2(4.94e-05)]_41 chrIV:4208246-4208326 3.19e-01 80 chrII:9231388-9231468 1.02e-01 59_[+3(1.99e-05)]_13 chrIV:9932217-9932297 7.80e-01 80 chrV:1627415-1627495 3.38e-03 18_[+4(7.62e-06)]_54 chrX:1536296-1536376 6.06e-01 80 chrIII:13056927-13057007 6.69e-01 80 chrV:1285856-1285936 3.54e-02 62_[+4(7.62e-06)]_10 chrI:5071433-5071513 4.54e-02 80 chrIII:188636-188716 3.90e-03 58_[+5(2.64e-05)]_14 chrIII:13344670-13344750 3.93e-02 40_[+2(4.94e-05)]_32 chrII:8143719-8143799 4.30e-03 43_[+1(5.01e-05)]_2_[+2(1.91e-05)]_\ 19 chrV:2250230-2250310 8.47e-03 16_[+2(6.20e-05)]_56 chrX:1961072-1961152 3.91e-02 43_[+4(7.62e-06)]_29 chrI:8083450-8083530 3.64e-01 80 chrX:17138304-17138384 2.33e-03 38_[+1(1.99e-05)]_34 chrX:16930394-16930474 6.47e-01 80 chrIV:4788486-4788566 3.43e-02 6_[+2(4.94e-05)]_66 chrI:2773906-2773986 1.75e-01 80 chrII:11761874-11761954 2.08e-01 80 chrIII:10202534-10202614 7.76e-02 27_[+1(5.01e-05)]_12_[+1(1.99e-05)]_\ 25 chrX:6836274-6836354 1.96e-04 36_[+4(7.62e-06)]_17_[+1(5.01e-05)]_\ 11 chrIII:1308338-1308418 5.07e-02 80 chrIV:14609926-14610006 8.88e-01 80 chrIII:11039397-11039477 1.53e-01 80 chrV:12599680-12599760 3.38e-01 80 chrX:600873-600953 6.58e-03 51_[+3(1.99e-05)]_21 chrX:587843-587923 8.01e-02 [+2(6.20e-05)]_72 chrV:3803521-3803601 2.72e-03 45_[+1(8.18e-05)]_14_[+4(7.62e-06)]_\ 5 chrV:2281684-2281764 9.63e-01 80 chrV:20414072-20414152 1.65e-01 42_[+1(5.01e-05)]_10_[+1(8.18e-05)]_\ 12 chrX:11790886-11790966 5.19e-02 27_[+2(4.94e-05)]_45 chrX:1394545-1394625 9.83e-02 12_[+2(4.94e-05)]_60 chrI:7601427-7601507 2.34e-02 39_[+3(1.99e-05)]_33 chrIII:4151786-4151866 2.27e-03 25_[+1(1.99e-05)]_7_[+3(5.24e-05)]_\ 32 chrX:11472608-11472688 3.31e-02 9_[+4(7.62e-06)]_63 chrI:3560106-3560186 8.00e-02 55_[+2(4.94e-05)]_17 chrV:5081103-5081183 6.53e-02 38_[+1(1.99e-05)]_34 chrX:1121716-1121796 4.50e-02 80 chrI:9248840-9248920 7.38e-02 56_[+1(8.18e-05)]_16 chrI:6850028-6850108 1.64e-01 80 chrX:1424517-1424597 1.79e-01 80 chrV:12261559-12261639 8.35e-02 6_[+1(1.99e-05)]_9_[+1(1.99e-05)]_\ 49 chrIV:4743360-4743440 8.93e-01 80 chrI:12040276-12040356 3.04e-01 80 chrV:7955308-7955388 9.45e-02 26_[+1(8.18e-05)]_46 chrIV:7550001-7550081 1.14e-03 1_[+3(1.99e-05)]_19_[+4(2.54e-05)]_\ 44 chrII:9160288-9160368 1.37e-02 6_[+2(1.91e-05)]_66 chrX:4137560-4137640 3.68e-01 80 chrI:8027927-8028007 4.06e-02 25_[+1(8.18e-05)]_47 chrII:9108605-9108685 9.03e-01 80 chrX:14510530-14510610 8.13e-02 80 chrI:4847362-4847442 3.58e-02 61_[+2(4.94e-05)]_11 chrX:15617306-15617386 1.13e-02 56_[+4(3.75e-05)]_16 chrV:2264594-2264674 1.09e-03 27_[+1(8.18e-05)]_21_[+4(7.62e-06)]_\ 16 chrIII:8355224-8355304 4.22e-05 40_[+1(8.18e-05)]_10_[+3(9.72e-05)]_\ 14 chrIII:5163106-5163186 1.65e-02 39_[+1(8.18e-05)]_33 chrIV:4357435-4357515 1.02e-02 55_[+5(2.64e-05)]_17 chrIII:3650422-3650502 1.04e-01 72_[+5(8.72e-05)] chrI:5804374-5804454 2.00e-02 33_[+3(1.99e-05)]_39 chrIII:6342214-6342294 4.59e-01 80 chrIII:9054909-9054989 3.60e-02 80 chrX:12666982-12667062 5.37e-01 80 chrI:7559654-7559734 3.51e-03 38_[+5(3.72e-05)]_19_[+1(1.99e-05)]_\ 7 chrX:573421-573501 3.91e-03 61_[+1(1.99e-05)]_11 chrV:14499276-14499356 5.15e-01 80 chrI:10733757-10733837 1.34e-03 6_[+2(1.91e-05)]_66 chrX:2582349-2582429 8.84e-02 57_[+2(6.20e-05)]_15 chrIV:2603851-2603931 1.04e-02 33_[+4(7.62e-06)]_39 chrII:2638234-2638314 5.90e-01 80 chrIII:1905788-1905868 2.16e-02 12_[+5(2.22e-06)]_60 chrIII:1284712-1284792 4.46e-01 80 chrX:12869676-12869756 9.49e-04 25_[+2(1.91e-05)]_16_[+3(9.72e-05)]_\ 23 chrIII:2076850-2076930 7.90e-02 80 chrIII:3030031-3030111 1.31e-01 80 chrIV:14797498-14797578 2.29e-03 53_[+5(2.99e-05)]_19 chrX:7341045-7341125 1.22e-01 18_[+3(1.99e-05)]_54 chrII:5338450-5338530 5.83e-01 80 chrX:15608790-15608870 7.76e-02 80 chrII:11719083-11719163 6.50e-02 15_[+2(4.94e-05)]_57 chrII:9281819-9281899 1.06e-02 41_[+1(8.18e-05)]_31 chrIV:7838986-7839066 5.49e-01 80 chrX:2234054-2234134 1.53e-01 80 chrX:6746742-6746822 3.09e-01 80 chrII:5572241-5572321 2.97e-01 23_[+3(5.24e-05)]_49 chrX:4619730-4619810 7.78e-04 51_[+5(6.49e-05)]_1_[+2(4.94e-05)]_\ 12 chrII:12023639-12023719 5.25e-01 80 chrII:11578462-11578542 1.07e-02 41_[+1(8.18e-05)]_31 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n10.farnam.hpc.yale.internal ********************************************************************************