******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/sem-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:7816500-7816580 1.0000 80 chrIII:7814711-7814791 1.0000 80 chrIII:7815984-7816064 1.0000 80 chrIII:7815743-7815823 1.0000 80 chrIII:7814918-7814998 1.0000 80 chrI:7025521-7025601 1.0000 80 chrX:15470149-15470229 1.0000 80 chrI:7028356-7028436 1.0000 80 chrI:7033363-7033443 1.0000 80 chrIV:7643293-7643373 1.0000 80 chrV:10822803-10822883 1.0000 80 chrIII:13127306-13127386 1.0000 80 chrI:7030004-7030084 1.0000 80 chrI:7026530-7026610 1.0000 80 chrIII:13216750-13216830 1.0000 80 chrIV:7659613-7659693 1.0000 80 chrV:11697643-11697723 1.0000 80 chrX:11463769-11463849 1.0000 80 chrV:11986641-11986721 1.0000 80 chrI:7034693-7034773 1.0000 80 chrIV:8107469-8107549 1.0000 80 chrII:6821218-6821298 1.0000 80 chrX:17034337-17034417 1.0000 80 chrX:8918932-8919012 1.0000 80 chrIV:8069212-8069292 1.0000 80 chrIV:7620634-7620714 1.0000 80 chrV:14140900-14140980 1.0000 80 chrI:7031590-7031670 1.0000 80 chrV:1350016-1350096 1.0000 80 chrIII:9271674-9271754 1.0000 80 chrII:7555605-7555685 1.0000 80 chrX:14503408-14503488 1.0000 80 chrI:8116146-8116226 1.0000 80 chrX:4500304-4500384 1.0000 80 chrIII:12014653-12014733 1.0000 80 chrIV:8094323-8094403 1.0000 80 chrX:12081019-12081099 1.0000 80 chrV:14004528-14004608 1.0000 80 chrIV:6836904-6836984 1.0000 80 chrIII:895712-895792 1.0000 80 chrIII:9664689-9664769 1.0000 80 chrIV:13013401-13013481 1.0000 80 chrI:7342589-7342669 1.0000 80 chrIII:11743834-11743914 1.0000 80 chrIII:12843033-12843113 1.0000 80 chrII:6994851-6994931 1.0000 80 chrIII:11814864-11814944 1.0000 80 chrIII:9698705-9698785 1.0000 80 chrX:8418594-8418674 1.0000 80 chrI:7233178-7233258 1.0000 80 chrX:6248835-6248915 1.0000 80 chrII:7850726-7850806 1.0000 80 chrX:13745740-13745820 1.0000 80 chrII:8751166-8751246 1.0000 80 chrX:5213203-5213283 1.0000 80 chrIII:8811288-8811368 1.0000 80 chrI:5410823-5410903 1.0000 80 chrV:5089945-5090025 1.0000 80 chrII:11928868-11928948 1.0000 80 chrIV:12114684-12114764 1.0000 80 chrIII:12847809-12847889 1.0000 80 chrI:9962939-9963019 1.0000 80 chrX:3838767-3838847 1.0000 80 chrV:6233039-6233119 1.0000 80 chrII:3956925-3957005 1.0000 80 chrX:14069642-14069722 1.0000 80 chrX:17003819-17003899 1.0000 80 chrX:5815536-5815616 1.0000 80 chrI:9200041-9200121 1.0000 80 chrIII:11742292-11742372 1.0000 80 chrX:5837150-5837230 1.0000 80 chrIII:13071749-13071829 1.0000 80 chrX:9228563-9228643 1.0000 80 chrIV:7588694-7588774 1.0000 80 chrIV:9092176-9092256 1.0000 80 chrI:7033573-7033653 1.0000 80 chrIV:15017165-15017245 1.0000 80 chrV:4918815-4918895 1.0000 80 chrI:8116992-8117072 1.0000 80 chrIII:9661297-9661377 1.0000 80 chrIV:4586175-4586255 1.0000 80 chrV:10722328-10722408 1.0000 80 chrIII:11738618-11738698 1.0000 80 chrIII:13182160-13182240 1.0000 80 chrX:12164203-12164283 1.0000 80 chrII:11065562-11065642 1.0000 80 chrIV:9615655-9615735 1.0000 80 chrIII:7950383-7950463 1.0000 80 chrII:6835696-6835776 1.0000 80 chrIII:3797242-3797322 1.0000 80 chrV:10875307-10875387 1.0000 80 chrIII:12588141-12588221 1.0000 80 chrV:7437590-7437670 1.0000 80 chrIV:1766137-1766217 1.0000 80 chrII:6498763-6498843 1.0000 80 chrX:17521526-17521606 1.0000 80 chrX:11665775-11665855 1.0000 80 chrX:11482298-11482378 1.0000 80 chrV:10727808-10727888 1.0000 80 chrII:8717771-8717851 1.0000 80 chrV:9194223-9194303 1.0000 80 chrI:9955960-9956040 1.0000 80 chrX:5515645-5515725 1.0000 80 chrV:4357520-4357600 1.0000 80 chrII:6175069-6175149 1.0000 80 chrII:301209-301289 1.0000 80 chrX:5031967-5032047 1.0000 80 chrI:1000964-1001044 1.0000 80 chrIII:12082216-12082296 1.0000 80 chrIV:10405207-10405287 1.0000 80 chrII:6823391-6823471 1.0000 80 chrII:14407909-14407989 1.0000 80 chrIII:12849362-12849442 1.0000 80 chrII:4584445-4584525 1.0000 80 chrIII:12800719-12800799 1.0000 80 chrIII:11624969-11625049 1.0000 80 chrV:8039349-8039429 1.0000 80 chrIV:11354082-11354162 1.0000 80 chrX:16484808-16484888 1.0000 80 chrIII:7296223-7296303 1.0000 80 chrX:12198406-12198486 1.0000 80 chrIII:12827278-12827358 1.0000 80 chrX:2852018-2852098 1.0000 80 chrII:8585445-8585525 1.0000 80 chrIV:6959627-6959707 1.0000 80 chrIII:7812717-7812797 1.0000 80 chrII:6838442-6838522 1.0000 80 chrX:12187599-12187679 1.0000 80 chrIII:4005513-4005593 1.0000 80 chrII:9030649-9030729 1.0000 80 chrIII:7724492-7724572 1.0000 80 chrX:9938375-9938455 1.0000 80 chrIII:11794716-11794796 1.0000 80 chrX:5117696-5117776 1.0000 80 chrV:5088459-5088539 1.0000 80 chrV:13345976-13346056 1.0000 80 chrI:7993412-7993492 1.0000 80 chrII:11762043-11762123 1.0000 80 chrIV:12397012-12397092 1.0000 80 chrX:12184631-12184711 1.0000 80 chrII:5704577-5704657 1.0000 80 chrX:2590920-2591000 1.0000 80 chrI:13501041-13501121 1.0000 80 chrIV:4022568-4022648 1.0000 80 chrIII:4600492-4600572 1.0000 80 chrX:16324383-16324463 1.0000 80 chrI:7761528-7761608 1.0000 80 chrX:3191974-3192054 1.0000 80 chrI:7517573-7517653 1.0000 80 chrV:14368386-14368466 1.0000 80 chrV:13243407-13243487 1.0000 80 chrIII:5421664-5421744 1.0000 80 chrX:4137895-4137975 1.0000 80 chrIII:5291014-5291094 1.0000 80 chrIV:6751346-6751426 1.0000 80 chrX:1062810-1062890 1.0000 80 chrIII:5760818-5760898 1.0000 80 chrV:11533138-11533218 1.0000 80 chrI:5889357-5889437 1.0000 80 chrI:10541762-10541842 1.0000 80 chrV:8201356-8201436 1.0000 80 chrV:14506875-14506955 1.0000 80 chrIV:9090126-9090206 1.0000 80 chrV:12537705-12537785 1.0000 80 chrX:12160442-12160522 1.0000 80 chrIII:12178190-12178270 1.0000 80 chrIII:12839061-12839141 1.0000 80 chrX:13975497-13975577 1.0000 80 chrV:2134498-2134578 1.0000 80 chrIII:6132293-6132373 1.0000 80 chrX:4551236-4551316 1.0000 80 chrII:8483953-8484033 1.0000 80 chrII:7800148-7800228 1.0000 80 chrII:5463973-5464053 1.0000 80 chrIV:6653760-6653840 1.0000 80 chrX:2140415-2140495 1.0000 80 chrX:7040962-7041042 1.0000 80 chrII:11337827-11337907 1.0000 80 chrII:6707667-6707747 1.0000 80 chrI:2659735-2659815 1.0000 80 chrV:18710138-18710218 1.0000 80 chrX:11466015-11466095 1.0000 80 chrX:17562387-17562467 1.0000 80 chrV:12530306-12530386 1.0000 80 chrII:6825893-6825973 1.0000 80 chrII:12239581-12239661 1.0000 80 chrX:17424453-17424533 1.0000 80 chrIII:11663572-11663652 1.0000 80 chrI:7340475-7340555 1.0000 80 chrV:8662399-8662479 1.0000 80 chrV:14001994-14002074 1.0000 80 chrX:5949289-5949369 1.0000 80 chrI:4908216-4908296 1.0000 80 chrI:5937101-5937181 1.0000 80 chrX:13502367-13502447 1.0000 80 chrI:999187-999267 1.0000 80 chrI:9787707-9787787 1.0000 80 chrII:10373678-10373758 1.0000 80 chrIV:7641635-7641715 1.0000 80 chrIV:12037077-12037157 1.0000 80 chrV:8658755-8658835 1.0000 80 chrI:7858398-7858478 1.0000 80 chrX:12204447-12204527 1.0000 80 chrII:5708275-5708355 1.0000 80 chrIII:13258334-13258414 1.0000 80 chrIII:9269328-9269408 1.0000 80 chrV:6351168-6351248 1.0000 80 chrII:8746288-8746368 1.0000 80 chrIV:12535554-12535634 1.0000 80 chrIII:11641493-11641573 1.0000 80 chrII:4876208-4876288 1.0000 80 chrIV:7727970-7728050 1.0000 80 chrI:7035820-7035900 1.0000 80 chrIII:11455697-11455777 1.0000 80 chrI:8261835-8261915 1.0000 80 chrI:8119363-8119443 1.0000 80 chrII:1233126-1233206 1.0000 80 chrIII:8689860-8689940 1.0000 80 chrV:8460931-8461011 1.0000 80 chrIV:8112808-8112888 1.0000 80 chrX:5704108-5704188 1.0000 80 chrI:10751723-10751803 1.0000 80 chrIV:10398386-10398466 1.0000 80 chrIII:13215931-13216011 1.0000 80 chrX:8307688-8307768 1.0000 80 chrIII:11834396-11834476 1.0000 80 chrV:12354604-12354684 1.0000 80 chrX:14566207-14566287 1.0000 80 chrV:4508259-4508339 1.0000 80 chrIV:13015942-13016022 1.0000 80 chrIII:4070365-4070445 1.0000 80 chrIV:6833767-6833847 1.0000 80 chrIII:12611339-12611419 1.0000 80 chrIV:7903536-7903616 1.0000 80 chrIII:3139311-3139391 1.0000 80 chrII:8409682-8409762 1.0000 80 chrIII:12841510-12841590 1.0000 80 chrV:14495706-14495786 1.0000 80 chrX:7438168-7438248 1.0000 80 chrIII:3543252-3543332 1.0000 80 chrX:6894308-6894388 1.0000 80 chrIV:8947335-8947415 1.0000 80 chrIII:7784250-7784330 1.0000 80 chrX:12178578-12178658 1.0000 80 chrIII:11334451-11334531 1.0000 80 chrII:8817427-8817507 1.0000 80 chrX:6250970-6251050 1.0000 80 chrIV:13028165-13028245 1.0000 80 chrX:2216764-2216844 1.0000 80 chrII:6824075-6824155 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_sem-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/sem-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.214 G 0.201 T 0.295 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.214 G 0.201 T 0.295 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARAAAGA MEME-1 width = 8 sites = 81 llr = 605 E-value = 3.8e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARAAAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 287a783a pos.-specific C :::::::: probability G 823:327: matrix T :::::::: bits 2.3 2.1 1.9 * * 1.6 * * Relative 1.4 * * * Entropy 1.2 ** ***** (10.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAGA consensus A G G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:12841510-12841590 22 2.40e-05 GATGAAAAGA GAAAAAGA GTGAGAGAGT chrI:9787707-9787787 29 2.40e-05 GCGAAATAGC GAAAAAGA CTCGGACCGT chrX:13502367-13502447 8 2.40e-05 aaagaga gaaaaaga agaaaaaaTT chrX:5117696-5117776 37 2.40e-05 ATGTACAAAT GAAAAAGA GCATCAGCAA chrII:9030649-9030729 35 2.40e-05 TTTTTTGGGG GAAAAAGA AAAAATGGTT chrV:10727808-10727888 73 2.40e-05 CATGCCTAGA GAAAAAGA chrIII:12588141-12588221 16 2.40e-05 GTAAGAAAAG GAAAAAGA GAGGGGGGGG chrV:10722328-10722408 17 2.40e-05 CGGGAATGTG GAAAAAGA AGAGAGAAGA chrIV:15017165-15017245 41 2.40e-05 AACAAGAAGG GAAAAAGA AGTGACAAGG chrIII:9698705-9698785 35 2.40e-05 AACACGCGAA GAAAAAGA TGTTCTCGTG chrI:8116146-8116226 17 2.40e-05 AGATTTAGTA GAAAAAGA GAGTTGTAGA chrIV:7620634-7620714 12 2.40e-05 TGGGCTAATC GAAAAAGA GAAGGAAGTC chrIV:7643293-7643373 32 2.40e-05 AGTTCCTTGA GAAAAAGA TAAAAAAGAA chrX:6894308-6894388 47 4.07e-05 AAAATAAGAA GAGAAAGA GTGAAAAGGG chrX:1062810-1062890 32 4.07e-05 TTCAATAGGG GAGAAAGA AGGGGGACCC chrIII:4600492-4600572 5 4.07e-05 ATAT GAGAAAGA GGGGAACCAA chrI:7031590-7031670 36 4.07e-05 GGAGCCCGCA GAGAAAGA AGAAGACGTC chrIV:8947335-8947415 6 5.73e-05 CGTCA GAAAGAGA TTCATGGAAT chrIV:10398386-10398466 64 5.73e-05 AGCCAATTTA GAAAGAGA GAAGGAGCC chrI:8119363-8119443 2 5.73e-05 G GAAAGAGA GAGGAAGCGG chrV:11533138-11533218 26 5.73e-05 AATCGAAAGT GAAAGAGA AAGGAGATGA chrIV:12114684-12114764 70 5.73e-05 GAGATATTTG GAAAGAGA AAA chrV:8662399-8662479 41 6.89e-05 TCGAATCATC GAGAGAGA AAGGCCATCA chrII:8585445-8585525 26 6.89e-05 AAAagagaga gagagaga gaagagaTGA chrIII:12800719-12800799 16 6.89e-05 CGTCATCTGA GAGAGAGA GACAGAAAGG chrV:9194223-9194303 33 6.89e-05 AGAATCGGAT GAGAGAGA CAAATCGGAT chrV:14004528-14004608 1 6.89e-05 . GAGAGAGA AGATTCAGAA chrI:7035820-7035900 36 1.04e-04 AAGGCGAAGA GAAAAAAA AAACGAAATG chrI:10541762-10541842 19 1.04e-04 TTCTCCTTCT GAAAAAAA CACCAGATTG chrV:13243407-13243487 71 1.04e-04 TTTCCGAAAA GAAAAAAA AA chrIV:10405207-10405287 62 1.04e-04 AGAAGTGAAG GAAAAAAA AAAGAGAAAG chrII:6175069-6175149 71 1.04e-04 TTTTTTTGCC GAAAAAAA GT chrIII:11742292-11742372 30 1.04e-04 AATTTCAAAA GAAAAAAA TGATTCAGAA chrX:5815536-5815616 73 1.04e-04 TTCACGAAAC GAAAAAAA chrV:5089945-5090025 14 1.04e-04 CGTTTTGGGA GAAAAAAA AATAAGAAGA chrIV:6836904-6836984 35 1.04e-04 CACTCTTGAA GAAAAAAA GCCGAGACAT chrV:14140900-14140980 5 1.04e-04 AATA GAAAAAAA TGGCAATACT chrX:6250970-6251050 47 1.37e-04 GCAAAAAAAA GGAAAAGA AGGAAGCGTA chrV:4508259-4508339 29 1.37e-04 CAATTTATGA GGAAAAGA GTGATTGCTT chrIV:11354082-11354162 54 1.37e-04 TGTGAAAAGA GGAAAAGA GCATCGTCTC chrIV:4586175-4586255 4 1.37e-04 AAG GGAAAAGA TGTCCAAATT chrIII:12847809-12847889 45 1.37e-04 CGGAAGAGAG GGAAAAGA TAAGAAATAA chrX:6248835-6248915 2 1.37e-04 T GAAAAGGA GAAAACGAGA chrIII:3139311-3139391 49 1.61e-04 CCGAAAAACA GAGAAAAA ACGAAATTAA chrX:8307688-8307768 53 1.61e-04 TTCTTTCGAT GAGAAAAA ACTAAACGAG chrIII:11624969-11625049 53 1.61e-04 AAGAGACGCA GAGAAAAA GTGGCGGAAT chrX:12178578-12178658 58 2.43e-04 TACTGTTCTT GAAAGAAA GAGTAGTTTT chrIII:11834396-11834476 5 2.43e-04 CAAA AAAAAAGA GAACAGCTGC chrII:7800148-7800228 63 2.43e-04 ACGAAAAAAC GAAAGAAA TGGATAATGT chrX:4551236-4551316 30 2.43e-04 ATGAGAGGGG AAAAAAGA GATAAGCTCT chrIII:12839061-12839141 25 2.43e-04 CTACATAAAA AAAAAAGA TCGCGATATG chrIV:4022568-4022648 61 2.43e-04 GGGGGTAGAG GGGAAAGA TTTATGGTGA chrIII:12082216-12082296 32 2.43e-04 TCGTGACGCC AAAAAAGA GAGTCTCTCT chrI:9955960-9956040 28 2.43e-04 GACCTCCTCC GAGAAGGA AAATGTGCGA chrX:17003819-17003899 33 2.43e-04 ACGGCCCAAT GAAAGAAA TGAGGCAAAA chrII:6835696-6835776 35 2.66e-04 TCGAGTTTTT GGAAGAGA CACAGACATT chrIII:9269328-9269408 14 3.47e-04 GAAGCACGGA GAGAGGGA CAGACAAAAA chrI:7517573-7517653 40 3.47e-04 GGGAGCTCCG GAGAGGGA GCTCTTTTTC chrIV:12397012-12397092 68 3.47e-04 AAACAGAATC GGGAGAGA CAAGT chrX:5515645-5515725 17 3.47e-04 ATTGCAAAGG GGGAGAGA TGCAGACAGA chrI:8116992-8117072 30 3.47e-04 CGGCTGAGCA AAAAGAGA GAGTGTGAGA chrV:6233039-6233119 28 3.47e-04 aaagataaag aaaagaga agagaattag chrIII:11455697-11455777 8 3.63e-04 CGAACAC AAGAGAGA CCTCACACTG chrIV:1766137-1766217 68 3.63e-04 GGGATGACTG AAGAGAGA TAGAA chrII:8746288-8746368 22 4.11e-04 ATTTGAAATT GAAAAGAA AAACAGGGAT chrI:7033363-7033443 24 4.11e-04 AAAACGAGAA GAAAAGAA TAGAGAAATT chrX:5704108-5704188 33 5.06e-04 ATGGGACTGC AAAAAAAA CTTCAATGAA chrV:14001994-14002074 32 5.06e-04 GCCCTCAAAC AAAAAAAA GCTTTGAAGA chrIII:6132293-6132373 59 5.06e-04 TCCGTGGAGT GAGAAGAA GATAGAGATC chrX:2590920-2591000 16 5.06e-04 GGGAGAAATA GAGAAGAA TGAAGGTCGG chrV:7437590-7437670 37 5.06e-04 CACTGAAACC AAAAAAAA TGAATGTGGA chrII:11065562-11065642 56 5.95e-04 cggaagggaa gggaagga agCAAGTCGC chrX:3838767-3838847 52 5.95e-04 AAGAAGACGC AAAAAGGA AATGTTGAGA chrII:11928868-11928948 20 5.95e-04 TCGTTCCTAG AAAAAGGA CATGAAGAAA chrX:4500304-4500384 64 5.95e-04 CAAGATTATA AGAAAAGA TCACGGAAA chrV:10875307-10875387 31 6.38e-04 GGGAAACGAC AAGAAAAA ACGAAAAAAG chrX:8418594-8418674 50 6.38e-04 CAACGAAGCC AAGAAAAA TCATTATAGT chrIII:12178190-12178270 25 7.29e-04 ATAGTGCGGA AAGAAGGA CGATTGATGA chrV:4357520-4357600 8 7.29e-04 ACCCGAA GGGAGAAA GCACTTTAAT chrII:6707667-6707747 48 7.68e-04 CCGGGAGCTG AGAAGAGA TGAATTGAGA chrX:16324383-16324463 14 8.15e-04 GTTTGGTAAG AAGAGGGA GGCGGCAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:12841510-12841590 2.4e-05 21_[+1]_51 chrI:9787707-9787787 2.4e-05 28_[+1]_44 chrX:13502367-13502447 2.4e-05 7_[+1]_65 chrX:5117696-5117776 2.4e-05 36_[+1]_36 chrII:9030649-9030729 2.4e-05 34_[+1]_38 chrV:10727808-10727888 2.4e-05 72_[+1] chrIII:12588141-12588221 2.4e-05 15_[+1]_57 chrV:10722328-10722408 2.4e-05 16_[+1]_56 chrIV:15017165-15017245 2.4e-05 40_[+1]_32 chrIII:9698705-9698785 2.4e-05 34_[+1]_38 chrI:8116146-8116226 2.4e-05 16_[+1]_56 chrIV:7620634-7620714 2.4e-05 11_[+1]_61 chrIV:7643293-7643373 2.4e-05 31_[+1]_41 chrX:6894308-6894388 4.1e-05 46_[+1]_26 chrX:1062810-1062890 4.1e-05 31_[+1]_41 chrIII:4600492-4600572 4.1e-05 4_[+1]_68 chrI:7031590-7031670 4.1e-05 35_[+1]_37 chrIV:8947335-8947415 5.7e-05 5_[+1]_67 chrIV:10398386-10398466 5.7e-05 63_[+1]_9 chrI:8119363-8119443 5.7e-05 1_[+1]_71 chrV:11533138-11533218 5.7e-05 25_[+1]_47 chrIV:12114684-12114764 5.7e-05 69_[+1]_3 chrV:8662399-8662479 6.9e-05 40_[+1]_32 chrII:8585445-8585525 6.9e-05 25_[+1]_47 chrIII:12800719-12800799 6.9e-05 15_[+1]_57 chrV:9194223-9194303 6.9e-05 32_[+1]_40 chrV:14004528-14004608 6.9e-05 [+1]_72 chrI:7035820-7035900 0.0001 35_[+1]_37 chrI:10541762-10541842 0.0001 18_[+1]_54 chrV:13243407-13243487 0.0001 70_[+1]_2 chrIV:10405207-10405287 0.0001 61_[+1]_11 chrII:6175069-6175149 0.0001 70_[+1]_2 chrIII:11742292-11742372 0.0001 29_[+1]_43 chrX:5815536-5815616 0.0001 72_[+1] chrV:5089945-5090025 0.0001 13_[+1]_59 chrIV:6836904-6836984 0.0001 34_[+1]_38 chrV:14140900-14140980 0.0001 4_[+1]_68 chrX:6250970-6251050 0.00014 46_[+1]_26 chrV:4508259-4508339 0.00014 28_[+1]_44 chrIV:11354082-11354162 0.00014 53_[+1]_19 chrIV:4586175-4586255 0.00014 3_[+1]_69 chrIII:12847809-12847889 0.00014 44_[+1]_28 chrX:6248835-6248915 0.00014 1_[+1]_71 chrIII:3139311-3139391 0.00016 48_[+1]_24 chrX:8307688-8307768 0.00016 52_[+1]_20 chrIII:11624969-11625049 0.00016 52_[+1]_20 chrX:12178578-12178658 0.00024 57_[+1]_15 chrIII:11834396-11834476 0.00024 4_[+1]_68 chrII:7800148-7800228 0.00024 62_[+1]_10 chrX:4551236-4551316 0.00024 29_[+1]_43 chrIII:12839061-12839141 0.00024 24_[+1]_48 chrIV:4022568-4022648 0.00024 60_[+1]_12 chrIII:12082216-12082296 0.00024 31_[+1]_41 chrI:9955960-9956040 0.00024 27_[+1]_45 chrX:17003819-17003899 0.00024 32_[+1]_40 chrII:6835696-6835776 0.00027 34_[+1]_38 chrIII:9269328-9269408 0.00035 13_[+1]_59 chrI:7517573-7517653 0.00035 39_[+1]_33 chrIV:12397012-12397092 0.00035 67_[+1]_5 chrX:5515645-5515725 0.00035 16_[+1]_56 chrI:8116992-8117072 0.00035 29_[+1]_43 chrV:6233039-6233119 0.00035 27_[+1]_45 chrIII:11455697-11455777 0.00036 7_[+1]_65 chrIV:1766137-1766217 0.00036 67_[+1]_5 chrII:8746288-8746368 0.00041 21_[+1]_51 chrI:7033363-7033443 0.00041 23_[+1]_49 chrX:5704108-5704188 0.00051 32_[+1]_40 chrV:14001994-14002074 0.00051 31_[+1]_41 chrIII:6132293-6132373 0.00051 58_[+1]_14 chrX:2590920-2591000 0.00051 15_[+1]_57 chrV:7437590-7437670 0.00051 36_[+1]_36 chrII:11065562-11065642 0.0006 55_[+1]_17 chrX:3838767-3838847 0.0006 51_[+1]_21 chrII:11928868-11928948 0.0006 19_[+1]_53 chrX:4500304-4500384 0.0006 63_[+1]_9 chrV:10875307-10875387 0.00064 30_[+1]_42 chrX:8418594-8418674 0.00064 49_[+1]_23 chrIII:12178190-12178270 0.00073 24_[+1]_48 chrV:4357520-4357600 0.00073 7_[+1]_65 chrII:6707667-6707747 0.00077 47_[+1]_25 chrX:16324383-16324463 0.00082 13_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARAAAGA width=8 seqs=81 chrIII:12841510-12841590 ( 22) GAAAAAGA 1 chrI:9787707-9787787 ( 29) GAAAAAGA 1 chrX:13502367-13502447 ( 8) GAAAAAGA 1 chrX:5117696-5117776 ( 37) GAAAAAGA 1 chrII:9030649-9030729 ( 35) GAAAAAGA 1 chrV:10727808-10727888 ( 73) GAAAAAGA 1 chrIII:12588141-12588221 ( 16) GAAAAAGA 1 chrV:10722328-10722408 ( 17) GAAAAAGA 1 chrIV:15017165-15017245 ( 41) GAAAAAGA 1 chrIII:9698705-9698785 ( 35) GAAAAAGA 1 chrI:8116146-8116226 ( 17) GAAAAAGA 1 chrIV:7620634-7620714 ( 12) GAAAAAGA 1 chrIV:7643293-7643373 ( 32) GAAAAAGA 1 chrX:6894308-6894388 ( 47) GAGAAAGA 1 chrX:1062810-1062890 ( 32) GAGAAAGA 1 chrIII:4600492-4600572 ( 5) GAGAAAGA 1 chrI:7031590-7031670 ( 36) GAGAAAGA 1 chrIV:8947335-8947415 ( 6) GAAAGAGA 1 chrIV:10398386-10398466 ( 64) GAAAGAGA 1 chrI:8119363-8119443 ( 2) GAAAGAGA 1 chrV:11533138-11533218 ( 26) GAAAGAGA 1 chrIV:12114684-12114764 ( 70) GAAAGAGA 1 chrV:8662399-8662479 ( 41) GAGAGAGA 1 chrII:8585445-8585525 ( 26) GAGAGAGA 1 chrIII:12800719-12800799 ( 16) GAGAGAGA 1 chrV:9194223-9194303 ( 33) GAGAGAGA 1 chrV:14004528-14004608 ( 1) GAGAGAGA 1 chrI:7035820-7035900 ( 36) GAAAAAAA 1 chrI:10541762-10541842 ( 19) GAAAAAAA 1 chrV:13243407-13243487 ( 71) GAAAAAAA 1 chrIV:10405207-10405287 ( 62) GAAAAAAA 1 chrII:6175069-6175149 ( 71) GAAAAAAA 1 chrIII:11742292-11742372 ( 30) GAAAAAAA 1 chrX:5815536-5815616 ( 73) GAAAAAAA 1 chrV:5089945-5090025 ( 14) GAAAAAAA 1 chrIV:6836904-6836984 ( 35) GAAAAAAA 1 chrV:14140900-14140980 ( 5) GAAAAAAA 1 chrX:6250970-6251050 ( 47) GGAAAAGA 1 chrV:4508259-4508339 ( 29) GGAAAAGA 1 chrIV:11354082-11354162 ( 54) GGAAAAGA 1 chrIV:4586175-4586255 ( 4) GGAAAAGA 1 chrIII:12847809-12847889 ( 45) GGAAAAGA 1 chrX:6248835-6248915 ( 2) GAAAAGGA 1 chrIII:3139311-3139391 ( 49) GAGAAAAA 1 chrX:8307688-8307768 ( 53) GAGAAAAA 1 chrIII:11624969-11625049 ( 53) GAGAAAAA 1 chrX:12178578-12178658 ( 58) GAAAGAAA 1 chrIII:11834396-11834476 ( 5) AAAAAAGA 1 chrII:7800148-7800228 ( 63) GAAAGAAA 1 chrX:4551236-4551316 ( 30) AAAAAAGA 1 chrIII:12839061-12839141 ( 25) AAAAAAGA 1 chrIV:4022568-4022648 ( 61) GGGAAAGA 1 chrIII:12082216-12082296 ( 32) AAAAAAGA 1 chrI:9955960-9956040 ( 28) GAGAAGGA 1 chrX:17003819-17003899 ( 33) GAAAGAAA 1 chrII:6835696-6835776 ( 35) GGAAGAGA 1 chrIII:9269328-9269408 ( 14) GAGAGGGA 1 chrI:7517573-7517653 ( 40) GAGAGGGA 1 chrIV:12397012-12397092 ( 68) GGGAGAGA 1 chrX:5515645-5515725 ( 17) GGGAGAGA 1 chrI:8116992-8117072 ( 30) AAAAGAGA 1 chrV:6233039-6233119 ( 28) AAAAGAGA 1 chrIII:11455697-11455777 ( 8) AAGAGAGA 1 chrIV:1766137-1766217 ( 68) AAGAGAGA 1 chrII:8746288-8746368 ( 22) GAAAAGAA 1 chrI:7033363-7033443 ( 24) GAAAAGAA 1 chrX:5704108-5704188 ( 33) AAAAAAAA 1 chrV:14001994-14002074 ( 32) AAAAAAAA 1 chrIII:6132293-6132373 ( 59) GAGAAGAA 1 chrX:2590920-2591000 ( 16) GAGAAGAA 1 chrV:7437590-7437670 ( 37) AAAAAAAA 1 chrII:11065562-11065642 ( 56) GGGAAGGA 1 chrX:3838767-3838847 ( 52) AAAAAGGA 1 chrII:11928868-11928948 ( 20) AAAAAGGA 1 chrX:4500304-4500384 ( 64) AGAAAAGA 1 chrV:10875307-10875387 ( 31) AAGAAAAA 1 chrX:8418594-8418674 ( 50) AAGAAAAA 1 chrIII:12178190-12178270 ( 25) AAGAAGGA 1 chrV:4357520-4357600 ( 8) GGGAGAAA 1 chrII:6707667-6707747 ( 48) AGAAGAGA 1 chrX:16324383-16324463 ( 14) AAGAGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 3.8e-024 -31 -1298 193 -1298 153 -1298 -32 -1298 117 -1298 78 -1298 178 -1298 -1298 -1298 125 -1298 62 -1298 153 -1298 -32 -1298 14 -1298 176 -1298 178 -1298 -1298 -1298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 3.8e-024 0.234568 0.000000 0.765432 0.000000 0.839506 0.000000 0.160494 0.000000 0.654321 0.000000 0.345679 0.000000 1.000000 0.000000 0.000000 0.000000 0.691358 0.000000 0.308642 0.000000 0.839506 0.000000 0.160494 0.000000 0.320988 0.000000 0.679012 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAAGA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]A[AG]A[AG]A[GA]A -------------------------------------------------------------------------------- Time 9.91 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTYYTTC MEME-2 width = 8 sites = 72 llr = 514 E-value = 1.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTYYTTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 26:643:9 probability G :::::::: matrix T 84a467a1 bits 2.3 2.1 1.9 * 1.6 * ** Relative 1.4 * ** Entropy 1.2 **** *** (10.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTTTC consensus CT TCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYTTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:7517573-7517653 70 2.19e-05 TTCAACTGCT TCTCTTTC TTC chrIII:11794716-11794796 44 2.19e-05 Actctctgta tctctttc tgtttctctc chrX:9228563-9228643 9 2.19e-05 tttatttc tctctttc tcattctctt chrIV:13015942-13016022 26 3.78e-05 TTTTTCTTCT TCTCCTTC TCTATTTCTC chrI:2659735-2659815 3 3.78e-05 CT TCTCCTTC GCCACGTGAC chrIV:6653760-6653840 15 3.78e-05 TCCAATCGTG TCTCCTTC TTTCTGTATC chrI:10541762-10541842 10 3.78e-05 AAGAGCCCT TCTCCTTC TGAAAAAAAC chrII:301209-301289 54 3.78e-05 CCTGTGTTCT TCTCCTTC TTCTTTCATC chrIII:9661297-9661377 46 3.78e-05 CTTATCTCCG TCTCCTTC TCTCTCATTC chrIV:9092176-9092256 19 3.78e-05 GTCGCTCTAt tctccttc tttttcttcg chrIII:7784250-7784330 33 1.14e-04 TAAGCCCTTC TCTCTCTC TTCCAGTTTC chrV:14495706-14495786 38 1.14e-04 CGCTCGCGCA TCTTTTTC CGGTGGGTCC chrX:8307688-8307768 42 1.14e-04 GCTTGCACTT TTTCTTTC GATGAGAAAA chrII:4876208-4876288 45 1.14e-04 CGTTTTTATC TCTCTCTC TGTTTGTTTT chrX:7040962-7041042 3 1.14e-04 TC TCTTTTTC TAAAAGGAAA chrII:5463973-5464053 19 1.14e-04 Ctcttcttct tctttttc gctttttctc chrX:13975497-13975577 37 1.14e-04 TGCCATCCAA TTTCTTTC CGTCACATCT chrX:12184631-12184711 26 1.14e-04 TCTCTCATTT TCTTTTTC TCACCATCTC chrIII:12849362-12849442 51 1.14e-04 TGTGAAACCC TTTCTTTC GGAAAAGTAC chrIII:12588141-12588221 73 1.14e-04 TTCCTCTTTC TCTCTCTC chrIV:7588694-7588774 34 1.14e-04 TTTTCTCTTG TCTTTTTC TATTTCTATT chrI:9962939-9963019 26 1.14e-04 TTTTCCCTCT TCTTTTTC TTTTCGTGCG chrV:1350016-1350096 18 1.14e-04 catccttttc tctctctc tatctcaatA chrX:11463769-11463849 63 1.14e-04 GGACAACTGT TCTTTTTC CTTCATCTTC chrIII:7814918-7814998 12 1.14e-04 ATGCACCTGG TTTCTTTC TTCTTTGGAA chrIII:11334451-11334531 28 1.69e-04 CCCGActtct tcttcttc ttctcctCAA chrIII:5291014-5291094 30 1.69e-04 TTTTCACCCC TTTCCTTC TAGAAAATTA chrV:8039349-8039429 53 1.69e-04 ATCTCTCTTT TTTCCTTC TCACTTTCTT chrV:9194223-9194303 50 1.69e-04 ACAAATCGGA TTTCCTTC TTGTCTTCTC chrII:3956925-3957005 23 1.69e-04 CTCATCGGAC tcttcttc tcattcttct chrX:13745740-13745820 61 1.69e-04 TGCCAATCGA TTTCCTTC CCTTCCATTT chrX:17034337-17034417 7 1.69e-04 TATCCA TCTTCTTC GATGTTTTTC chrII:6821218-6821298 32 1.69e-04 TTTCAATCTA TCTTCTTC ACCTCTTTTC chrI:4908216-4908296 2 1.85e-04 T CCTCTTTC CAATTTTGTT chrIII:9698705-9698785 63 1.97e-04 GTCGCCCCTT CCTCCTTC CTTCCGTCGG chrIII:12611339-12611419 9 2.82e-04 TCGTTTTT TTTTTTTC AAATCAGAAA chrIII:13215931-13216011 52 2.82e-04 TTCAATACTA TTTTTTTC TTTTAGCATG chrIII:8689860-8689940 15 2.82e-04 CTTCTCTTTA TTTCTCTC AGTCTCTCAA chrIII:11455697-11455777 39 2.82e-04 TTTTATTGCT TTTCTCTC TTTTTTTCAC chrX:11466015-11466095 56 2.82e-04 TTCATCTTAT TTTTTTTC TTTTCAAGCA chrII:6994851-6994931 60 2.82e-04 CCCAACCCCT TTTTTTTC CTCATCTAAT chrIII:13216750-13216830 6 2.82e-04 TAATT TTTTTTTC GCTTAAATCA chrX:12178578-12178658 22 3.44e-04 TTCGTTTCGT TTTCCCTC CCCGGATGAT chrX:12204447-12204527 9 3.44e-04 ACTTCCTT TTTTCTTC CCACTTCCGC chrI:7993412-7993492 72 3.44e-04 CTCCGTGAGC TCTTCCTC A chrIII:7296223-7296303 44 3.44e-04 TTTTCCCAAT TTTCCCTC TTGCATTTCA chrIV:15017165-15017245 5 3.44e-04 GCCT TCTTCCTC AACCCAAAAA chrIV:7659613-7659693 51 3.44e-04 AACTCTCGGC TCTTCCTC GAGACATCTG chrII:6498763-6498843 2 3.99e-04 t cttcttTC CGAGAATGGG chrIV:9615655-9615735 61 3.99e-04 CGGTTGGTCC CCTCTCTC ATTTAATCTC chrI:9200041-9200121 47 3.99e-04 CGCTGTGGCT CCTCTCTC CGTGTGTGCT chrX:2216764-2216844 18 4.40e-04 TTGCCCCCCT CCTCCCTC CCATGTTGAT chrIV:6959627-6959707 65 4.40e-04 AACTCTGCGT CTTCCTTC CATCTTGT chrII:6824075-6824155 8 4.92e-04 tctcGGG TTTTCCTC TTTGGTTATC chrIV:7903536-7903616 72 5.54e-04 CACTTGAATC CCTTTCTC T chrV:4508259-4508339 44 5.54e-04 AGAGTGATTG CTTTTTTC GGCGGTTTTC chrII:1233126-1233206 65 5.54e-04 CACCATGTTA CTTTTTTC TGTCTTTT chrI:8119363-8119443 46 5.54e-04 ATTGGATGCT CTTCTCTC GTCTCACACG chrX:11665775-11665855 48 5.54e-04 CCACCTTTTA CTTTTTTC GGAAATCTTC chrIII:11743834-11743914 11 5.54e-04 TCACTAAAAG CTTTTTTC GTCCGAAATC chrIV:8107469-8107549 42 5.54e-04 actctttTCA CTTTTTTC AAACTAAATA chrV:8460931-8461011 40 6.29e-04 TCGTGACACA CTTTCTTC ACGTCTGCGT chrI:5410823-5410903 71 6.29e-04 TAGGCGGGTT TCTCTTTT CT chrIII:11814864-11814944 24 6.29e-04 AATGTCTGTG TCTCTTTT ATTGCCCCTA chrI:7030004-7030084 10 6.29e-04 GCTTCTATC TCTCTTTT TTGATTGACA chrI:8261835-8261915 30 6.51e-04 GTTCCGTTTG TCTCCTTT TCTCCAAGCC chrII:11337827-11337907 26 6.51e-04 ACCGGATTCG TCTCCTTT TATTAGGAAA chrX:17521526-17521606 43 6.66e-04 TGGTCTATGT TCTCTTCC AACATAAGGG chrX:16484808-16484888 21 6.78e-04 CACTCCCCCT TCTCCTCC CACCGCCCTG chrI:8116992-8117072 68 8.21e-04 CGCAGAGATA TCTCTCTT GTCTC chrIII:12827278-12827358 21 8.97e-04 TTACTACTCT TCTCCCTT CAATCCATCA chrI:7025521-7025601 6 9.52e-04 GAAAA TCTTTTCC TGTTTGCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYTTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7517573-7517653 2.2e-05 69_[+2]_3 chrIII:11794716-11794796 2.2e-05 43_[+2]_29 chrX:9228563-9228643 2.2e-05 8_[+2]_64 chrIV:13015942-13016022 3.8e-05 25_[+2]_47 chrI:2659735-2659815 3.8e-05 2_[+2]_70 chrIV:6653760-6653840 3.8e-05 14_[+2]_58 chrI:10541762-10541842 3.8e-05 9_[+2]_63 chrII:301209-301289 3.8e-05 53_[+2]_19 chrIII:9661297-9661377 3.8e-05 45_[+2]_27 chrIV:9092176-9092256 3.8e-05 18_[+2]_54 chrIII:7784250-7784330 0.00011 32_[+2]_40 chrV:14495706-14495786 0.00011 37_[+2]_35 chrX:8307688-8307768 0.00011 41_[+2]_31 chrII:4876208-4876288 0.00011 44_[+2]_28 chrX:7040962-7041042 0.00011 2_[+2]_70 chrII:5463973-5464053 0.00011 18_[+2]_54 chrX:13975497-13975577 0.00011 36_[+2]_36 chrX:12184631-12184711 0.00011 25_[+2]_47 chrIII:12849362-12849442 0.00011 50_[+2]_22 chrIII:12588141-12588221 0.00011 72_[+2] chrIV:7588694-7588774 0.00011 33_[+2]_39 chrI:9962939-9963019 0.00011 25_[+2]_47 chrV:1350016-1350096 0.00011 17_[+2]_55 chrX:11463769-11463849 0.00011 62_[+2]_10 chrIII:7814918-7814998 0.00011 11_[+2]_61 chrIII:11334451-11334531 0.00017 27_[+2]_45 chrIII:5291014-5291094 0.00017 29_[+2]_43 chrV:8039349-8039429 0.00017 52_[+2]_20 chrV:9194223-9194303 0.00017 49_[+2]_23 chrII:3956925-3957005 0.00017 22_[+2]_50 chrX:13745740-13745820 0.00017 60_[+2]_12 chrX:17034337-17034417 0.00017 6_[+2]_66 chrII:6821218-6821298 0.00017 31_[+2]_41 chrI:4908216-4908296 0.00019 1_[+2]_71 chrIII:9698705-9698785 0.0002 62_[+2]_10 chrIII:12611339-12611419 0.00028 8_[+2]_64 chrIII:13215931-13216011 0.00028 51_[+2]_21 chrIII:8689860-8689940 0.00028 14_[+2]_58 chrIII:11455697-11455777 0.00028 38_[+2]_34 chrX:11466015-11466095 0.00028 55_[+2]_17 chrII:6994851-6994931 0.00028 59_[+2]_13 chrIII:13216750-13216830 0.00028 5_[+2]_67 chrX:12178578-12178658 0.00034 21_[+2]_51 chrX:12204447-12204527 0.00034 8_[+2]_64 chrI:7993412-7993492 0.00034 71_[+2]_1 chrIII:7296223-7296303 0.00034 43_[+2]_29 chrIV:15017165-15017245 0.00034 4_[+2]_68 chrIV:7659613-7659693 0.00034 50_[+2]_22 chrII:6498763-6498843 0.0004 1_[+2]_71 chrIV:9615655-9615735 0.0004 60_[+2]_12 chrI:9200041-9200121 0.0004 46_[+2]_26 chrX:2216764-2216844 0.00044 17_[+2]_55 chrIV:6959627-6959707 0.00044 64_[+2]_8 chrII:6824075-6824155 0.00049 7_[+2]_65 chrIV:7903536-7903616 0.00055 71_[+2]_1 chrV:4508259-4508339 0.00055 43_[+2]_29 chrII:1233126-1233206 0.00055 64_[+2]_8 chrI:8119363-8119443 0.00055 45_[+2]_27 chrX:11665775-11665855 0.00055 47_[+2]_25 chrIII:11743834-11743914 0.00055 10_[+2]_62 chrIV:8107469-8107549 0.00055 41_[+2]_31 chrV:8460931-8461011 0.00063 39_[+2]_33 chrI:5410823-5410903 0.00063 70_[+2]_2 chrIII:11814864-11814944 0.00063 23_[+2]_49 chrI:7030004-7030084 0.00063 9_[+2]_63 chrI:8261835-8261915 0.00065 29_[+2]_43 chrII:11337827-11337907 0.00065 25_[+2]_47 chrX:17521526-17521606 0.00067 42_[+2]_30 chrX:16484808-16484888 0.00068 20_[+2]_52 chrI:8116992-8117072 0.00082 67_[+2]_5 chrIII:12827278-12827358 0.0009 20_[+2]_52 chrI:7025521-7025601 0.00095 5_[+2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYTTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTYYTTC width=8 seqs=72 chrI:7517573-7517653 ( 70) TCTCTTTC 1 chrIII:11794716-11794796 ( 44) TCTCTTTC 1 chrX:9228563-9228643 ( 9) TCTCTTTC 1 chrIV:13015942-13016022 ( 26) TCTCCTTC 1 chrI:2659735-2659815 ( 3) TCTCCTTC 1 chrIV:6653760-6653840 ( 15) TCTCCTTC 1 chrI:10541762-10541842 ( 10) TCTCCTTC 1 chrII:301209-301289 ( 54) TCTCCTTC 1 chrIII:9661297-9661377 ( 46) TCTCCTTC 1 chrIV:9092176-9092256 ( 19) TCTCCTTC 1 chrIII:7784250-7784330 ( 33) TCTCTCTC 1 chrV:14495706-14495786 ( 38) TCTTTTTC 1 chrX:8307688-8307768 ( 42) TTTCTTTC 1 chrII:4876208-4876288 ( 45) TCTCTCTC 1 chrX:7040962-7041042 ( 3) TCTTTTTC 1 chrII:5463973-5464053 ( 19) TCTTTTTC 1 chrX:13975497-13975577 ( 37) TTTCTTTC 1 chrX:12184631-12184711 ( 26) TCTTTTTC 1 chrIII:12849362-12849442 ( 51) TTTCTTTC 1 chrIII:12588141-12588221 ( 73) TCTCTCTC 1 chrIV:7588694-7588774 ( 34) TCTTTTTC 1 chrI:9962939-9963019 ( 26) TCTTTTTC 1 chrV:1350016-1350096 ( 18) TCTCTCTC 1 chrX:11463769-11463849 ( 63) TCTTTTTC 1 chrIII:7814918-7814998 ( 12) TTTCTTTC 1 chrIII:11334451-11334531 ( 28) TCTTCTTC 1 chrIII:5291014-5291094 ( 30) TTTCCTTC 1 chrV:8039349-8039429 ( 53) TTTCCTTC 1 chrV:9194223-9194303 ( 50) TTTCCTTC 1 chrII:3956925-3957005 ( 23) TCTTCTTC 1 chrX:13745740-13745820 ( 61) TTTCCTTC 1 chrX:17034337-17034417 ( 7) TCTTCTTC 1 chrII:6821218-6821298 ( 32) TCTTCTTC 1 chrI:4908216-4908296 ( 2) CCTCTTTC 1 chrIII:9698705-9698785 ( 63) CCTCCTTC 1 chrIII:12611339-12611419 ( 9) TTTTTTTC 1 chrIII:13215931-13216011 ( 52) TTTTTTTC 1 chrIII:8689860-8689940 ( 15) TTTCTCTC 1 chrIII:11455697-11455777 ( 39) TTTCTCTC 1 chrX:11466015-11466095 ( 56) TTTTTTTC 1 chrII:6994851-6994931 ( 60) TTTTTTTC 1 chrIII:13216750-13216830 ( 6) TTTTTTTC 1 chrX:12178578-12178658 ( 22) TTTCCCTC 1 chrX:12204447-12204527 ( 9) TTTTCTTC 1 chrI:7993412-7993492 ( 72) TCTTCCTC 1 chrIII:7296223-7296303 ( 44) TTTCCCTC 1 chrIV:15017165-15017245 ( 5) TCTTCCTC 1 chrIV:7659613-7659693 ( 51) TCTTCCTC 1 chrII:6498763-6498843 ( 2) CTTCTTTC 1 chrIV:9615655-9615735 ( 61) CCTCTCTC 1 chrI:9200041-9200121 ( 47) CCTCTCTC 1 chrX:2216764-2216844 ( 18) CCTCCCTC 1 chrIV:6959627-6959707 ( 65) CTTCCTTC 1 chrII:6824075-6824155 ( 8) TTTTCCTC 1 chrIV:7903536-7903616 ( 72) CCTTTCTC 1 chrV:4508259-4508339 ( 44) CTTTTTTC 1 chrII:1233126-1233206 ( 65) CTTTTTTC 1 chrI:8119363-8119443 ( 46) CTTCTCTC 1 chrX:11665775-11665855 ( 48) CTTTTTTC 1 chrIII:11743834-11743914 ( 11) CTTTTTTC 1 chrIV:8107469-8107549 ( 42) CTTTTTTC 1 chrV:8460931-8461011 ( 40) CTTTCTTC 1 chrI:5410823-5410903 ( 71) TCTCTTTT 1 chrIII:11814864-11814944 ( 24) TCTCTTTT 1 chrI:7030004-7030084 ( 10) TCTCTTTT 1 chrI:8261835-8261915 ( 30) TCTCCTTT 1 chrII:11337827-11337907 ( 26) TCTCCTTT 1 chrX:17521526-17521606 ( 43) TCTCTTCC 1 chrX:16484808-16484888 ( 21) TCTCCTCC 1 chrI:8116992-8117072 ( 68) TCTCTCTT 1 chrIII:12827278-12827358 ( 21) TCTCCCTT 1 chrI:7025521-7025601 ( 6) TCTTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYTTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 1.3e-004 -1281 -4 -1281 143 -1281 151 -1281 40 -1281 -1281 -1281 176 -1281 148 -1281 45 -1281 96 -1281 98 -1281 30 -1281 132 -1281 -236 -1281 170 -1281 208 -1281 -160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYTTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 1.3e-004 0.000000 0.208333 0.000000 0.791667 0.000000 0.611111 0.000000 0.388889 0.000000 0.000000 0.000000 1.000000 0.000000 0.597222 0.000000 0.402778 0.000000 0.416667 0.000000 0.583333 0.000000 0.263889 0.000000 0.736111 0.000000 0.041667 0.000000 0.958333 0.000000 0.902778 0.000000 0.097222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYYTTC MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CT]T[CT][TC][TC]TC -------------------------------------------------------------------------------- Time 15.18 secs. ******************************************************************************** ******************************************************************************** MOTIF GGRGGRRG MEME-3 width = 8 sites = 27 llr = 233 E-value = 2.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRGGRRG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:5::44: pos.-specific C ::112::: probability G 9a49866a matrix T :::::::: bits 2.3 * * 2.1 * * 1.9 * * 1.6 ** ** * Relative 1.4 ** ** * Entropy 1.2 ** ***** (12.5 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGGGG consensus G AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRGGRRG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:12588141-12588221 28 2.66e-06 AAAAGAGAGG GGGGGGGG GAAATAACCA chrX:17003819-17003899 62 2.66e-06 GAAGTGGAAA GGGGGGGG AGAGTTTGAG chrX:11463769-11463849 19 2.66e-06 GGCGCGAGAA GGGGGGGG CTCATGATGA chrX:5815536-5815616 47 6.51e-06 GTGGGGTTTC GGAGGGGG AGAAGCATTT chrX:2590920-2591000 3 1.42e-05 GA GGGGGGAG AAATAGAGAA chrIII:3543252-3543332 46 2.53e-05 TGGGAACAAG GGAGGGAG GAAGAGGAAA chrV:4357520-4357600 73 2.53e-05 AAGACggaga ggaggagg chrIII:11738618-11738698 44 2.53e-05 CAGAAATTGG GGAGGAGG CGGTCAGAGA chrII:8751166-8751246 40 2.53e-05 ATCATGGATC GGAGGAGG CGACGCGTTG chrV:2134498-2134578 66 3.37e-05 AGCAATTAGA GGCGGGGG TCGGAAC chrV:5088459-5088539 43 3.37e-05 GGTGAGAGCG GGGGGAAG AGTCTGCTCC chrX:2140415-2140495 13 4.17e-05 ATTAAAGAAA GGAGGAAG CGACGGAGGC chrIII:7950383-7950463 22 4.17e-05 CAAAAAGGTG GGAGGAAG GTGGCAAAAG chrIII:9664689-9664769 61 4.17e-05 TGCTCAAAGA GGAGGAAG GACCAAAGTT chrIII:12082216-12082296 66 4.86e-05 CCAAATACGG GGAGCGGG ACGAAGC chrII:6838442-6838522 53 5.55e-05 AAGAGAGCGC GGACGGGG TGGGAGTGTT chrIV:1766137-1766217 2 6.76e-05 G AGGGGGGG CCCGGACGAT chrV:13243407-13243487 11 8.13e-05 GAGTGTCCGA GGGGCGAG AAGAGTGCAA chrII:8409682-8409762 19 9.31e-05 AAAATCATTA GGAGCGAG TGCGTGCGCC chrIII:12839061-12839141 56 1.01e-04 GGGAAACCGA GGGCGGAG TCCAAGAGAC chrII:6498763-6498843 17 1.01e-04 tTCCGAGAAT GGGCGGAG TTTCGAATAA chrII:7850726-7850806 35 1.13e-04 CTGGACGGCG GGACGAGG GGATTTTCAT chrII:6835696-6835776 70 1.30e-04 TTTAGTGTGT AGGGGAGG TCA chrII:6707667-6707747 63 1.55e-04 AGATGAATTG AGAGGAGG AGTGGAGTAG chrIII:7812717-7812797 11 1.55e-04 CCGACGGCGG GGCGCGGG ACCTAATGGC chrX:16484808-16484888 70 1.64e-04 CTCTGTTTCT GGAGCAAG AAG chrIV:4022568-4022648 48 2.00e-04 GCGTATGTGT AGCGGGGG TAGAGGGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRGGRRG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:12588141-12588221 2.7e-06 27_[+3]_45 chrX:17003819-17003899 2.7e-06 61_[+3]_11 chrX:11463769-11463849 2.7e-06 18_[+3]_54 chrX:5815536-5815616 6.5e-06 46_[+3]_26 chrX:2590920-2591000 1.4e-05 2_[+3]_70 chrIII:3543252-3543332 2.5e-05 45_[+3]_27 chrV:4357520-4357600 2.5e-05 72_[+3] chrIII:11738618-11738698 2.5e-05 43_[+3]_29 chrII:8751166-8751246 2.5e-05 39_[+3]_33 chrV:2134498-2134578 3.4e-05 65_[+3]_7 chrV:5088459-5088539 3.4e-05 42_[+3]_30 chrX:2140415-2140495 4.2e-05 12_[+3]_60 chrIII:7950383-7950463 4.2e-05 21_[+3]_51 chrIII:9664689-9664769 4.2e-05 60_[+3]_12 chrIII:12082216-12082296 4.9e-05 65_[+3]_7 chrII:6838442-6838522 5.6e-05 52_[+3]_20 chrIV:1766137-1766217 6.8e-05 1_[+3]_71 chrV:13243407-13243487 8.1e-05 10_[+3]_62 chrII:8409682-8409762 9.3e-05 18_[+3]_54 chrIII:12839061-12839141 0.0001 55_[+3]_17 chrII:6498763-6498843 0.0001 16_[+3]_56 chrII:7850726-7850806 0.00011 34_[+3]_38 chrII:6835696-6835776 0.00013 69_[+3]_3 chrII:6707667-6707747 0.00016 62_[+3]_10 chrIII:7812717-7812797 0.00016 10_[+3]_62 chrX:16484808-16484888 0.00016 69_[+3]_3 chrIV:4022568-4022648 0.0002 47_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRGGRRG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRGGRRG width=8 seqs=27 chrIII:12588141-12588221 ( 28) GGGGGGGG 1 chrX:17003819-17003899 ( 62) GGGGGGGG 1 chrX:11463769-11463849 ( 19) GGGGGGGG 1 chrX:5815536-5815616 ( 47) GGAGGGGG 1 chrX:2590920-2591000 ( 3) GGGGGGAG 1 chrIII:3543252-3543332 ( 46) GGAGGGAG 1 chrV:4357520-4357600 ( 73) GGAGGAGG 1 chrIII:11738618-11738698 ( 44) GGAGGAGG 1 chrII:8751166-8751246 ( 40) GGAGGAGG 1 chrV:2134498-2134578 ( 66) GGCGGGGG 1 chrV:5088459-5088539 ( 43) GGGGGAAG 1 chrX:2140415-2140495 ( 13) GGAGGAAG 1 chrIII:7950383-7950463 ( 22) GGAGGAAG 1 chrIII:9664689-9664769 ( 61) GGAGGAAG 1 chrIII:12082216-12082296 ( 66) GGAGCGGG 1 chrII:6838442-6838522 ( 53) GGACGGGG 1 chrIV:1766137-1766217 ( 2) AGGGGGGG 1 chrV:13243407-13243487 ( 11) GGGGCGAG 1 chrII:8409682-8409762 ( 19) GGAGCGAG 1 chrIII:12839061-12839141 ( 56) GGGCGGAG 1 chrII:6498763-6498843 ( 17) GGGCGGAG 1 chrII:7850726-7850806 ( 35) GGACGAGG 1 chrII:6835696-6835776 ( 70) AGGGGAGG 1 chrII:6707667-6707747 ( 63) AGAGGAGG 1 chrIII:7812717-7812797 ( 11) GGCGCGGG 1 chrX:16484808-16484888 ( 70) GGAGCAAG 1 chrIV:4022568-4022648 ( 48) AGCGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRGGRRG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 2.8e+000 -97 -1140 208 -1140 -1140 -1140 232 -1140 84 -95 88 -1140 -1140 -53 208 -1140 -1140 -21 202 -1140 49 -1140 156 -1140 49 -1140 156 -1140 -1140 -1140 232 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRGGRRG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.8e+000 0.148148 0.000000 0.851852 0.000000 0.000000 0.000000 1.000000 0.000000 0.518519 0.111111 0.370370 0.000000 0.000000 0.148148 0.851852 0.000000 0.000000 0.185185 0.814815 0.000000 0.407407 0.000000 0.592593 0.000000 0.407407 0.000000 0.592593 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRGGRRG MEME-3 regular expression -------------------------------------------------------------------------------- GG[AG]GG[GA][GA]G -------------------------------------------------------------------------------- Time 18.71 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-4 width = 8 sites = 7 llr = 81 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a::a: probability G ::a:a::: matrix T :a:::a:a bits 2.3 * *** * 2.1 * *** * 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11334451-11334531 66 1.02e-05 CCTTGTCACT CTGCGTCT TCTCGAG chrIV:7903536-7903616 7 1.02e-05 TTTCGT CTGCGTCT CCACCTCTTC chrV:8460931-8461011 52 1.02e-05 TTCTTCACGT CTGCGTCT CTTAATATCG chrI:999187-999267 22 1.02e-05 AAAAGTGCGT CTGCGTCT CCCAGAGCGC chrV:14368386-14368466 11 1.02e-05 TCCGGGCATG CTGCGTCT CCACATGGCG chrI:1000964-1001044 27 1.02e-05 CTATAAGTGT CTGCGTCT CGCCGATTCG chrIII:13182160-13182240 5 1.02e-05 ATCT CTGCGTCT CTATTAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11334451-11334531 1e-05 65_[+4]_7 chrIV:7903536-7903616 1e-05 6_[+4]_66 chrV:8460931-8461011 1e-05 51_[+4]_21 chrI:999187-999267 1e-05 21_[+4]_51 chrV:14368386-14368466 1e-05 10_[+4]_62 chrI:1000964-1001044 1e-05 26_[+4]_46 chrIII:13182160-13182240 1e-05 4_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=7 chrIII:11334451-11334531 ( 66) CTGCGTCT 1 chrIV:7903536-7903616 ( 7) CTGCGTCT 1 chrV:8460931-8461011 ( 52) CTGCGTCT 1 chrI:999187-999267 ( 22) CTGCGTCT 1 chrV:14368386-14368466 ( 11) CTGCGTCT 1 chrI:1000964-1001044 ( 27) CTGCGTCT 1 chrIII:13182160-13182240 ( 5) CTGCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 1.1e+002 -945 222 -945 -945 -945 -945 -945 176 -945 -945 231 -945 -945 222 -945 -945 -945 -945 231 -945 -945 -945 -945 176 -945 222 -945 -945 -945 -945 -945 176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.1e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 22.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CGACGVCG MEME-5 width = 8 sites = 11 llr = 111 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGACGVCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::4:: pos.-specific C 8::a:3a2 probability G 2a::a4:8 matrix T :::::::: bits 2.3 * ** * 2.1 * ** * 1.9 **** * 1.6 ***** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (14.6 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGACGACG consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGVCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7040962-7041042 32 4.64e-06 ATGATTATAT CGACGGCG AGTTGCCAGT chrIII:7812717-7812797 2 4.64e-06 C CGACGGCG GGGCGCGGGA chrV:4508259-4508339 61 1.63e-05 CGGCGGTTTT CGACGACG AGACTTGATG chrIII:13258334-13258414 40 1.63e-05 TATACGAAGA CGACGCCG CCTGTGAGCA chrX:3838767-3838847 22 1.63e-05 TCTCTAATGA CGACGACG ACCAATAAAA chrIV:13013401-13013481 63 1.63e-05 AAAGTGAAAA CGACGCCG CCAGAAGGCA chrI:7026530-7026610 36 1.63e-05 TTAGGATGCG CGACGACG TATTTGcaca chrII:7850726-7850806 27 2.06e-05 ACGACCTTCT GGACGGCG GGACGAGGGG chrX:17003819-17003899 21 2.56e-05 AACTGTTAGA CGACGGCC CAATGAAAGA chrIV:12397012-12397092 18 3.65e-05 GGTGGTCATC GGACGACG GAAACAGGTC chrII:7555605-7555685 60 4.89e-05 AAGGCGCGAG CGACGCCC CAAAAATGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGVCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7040962-7041042 4.6e-06 31_[+5]_41 chrIII:7812717-7812797 4.6e-06 1_[+5]_71 chrV:4508259-4508339 1.6e-05 60_[+5]_12 chrIII:13258334-13258414 1.6e-05 39_[+5]_33 chrX:3838767-3838847 1.6e-05 21_[+5]_51 chrIV:13013401-13013481 1.6e-05 62_[+5]_10 chrI:7026530-7026610 1.6e-05 35_[+5]_37 chrII:7850726-7850806 2.1e-05 26_[+5]_46 chrX:17003819-17003899 2.6e-05 20_[+5]_52 chrIV:12397012-12397092 3.6e-05 17_[+5]_55 chrII:7555605-7555685 4.9e-05 59_[+5]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGVCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGACGVCG width=8 seqs=11 chrX:7040962-7041042 ( 32) CGACGGCG 1 chrIII:7812717-7812797 ( 2) CGACGGCG 1 chrV:4508259-4508339 ( 61) CGACGACG 1 chrIII:13258334-13258414 ( 40) CGACGCCG 1 chrX:3838767-3838847 ( 22) CGACGACG 1 chrIV:13013401-13013481 ( 63) CGACGCCG 1 chrI:7026530-7026610 ( 36) CGACGACG 1 chrII:7850726-7850806 ( 27) GGACGGCG 1 chrX:17003819-17003899 ( 21) CGACGGCC 1 chrIV:12397012-12397092 ( 18) GGACGACG 1 chrII:7555605-7555685 ( 60) CGACGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGVCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 1.0e+003 -1010 193 -14 -1010 -1010 -1010 232 -1010 178 -1010 -1010 -1010 -1010 222 -1010 -1010 -1010 -1010 232 -1010 32 35 86 -1010 -1010 222 -1010 -1010 -1010 -23 203 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGVCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.0e+003 0.000000 0.818182 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.272727 0.363636 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGVCG MEME-5 regular expression -------------------------------------------------------------------------------- CGACG[AGC]CG -------------------------------------------------------------------------------- Time 25.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7816500-7816580 9.79e-01 80 chrIII:7814711-7814791 9.99e-01 80 chrIII:7815984-7816064 8.28e-01 80 chrIII:7815743-7815823 5.12e-01 80 chrIII:7814918-7814998 2.12e-01 80 chrI:7025521-7025601 3.02e-01 80 chrX:15470149-15470229 9.69e-01 80 chrI:7028356-7028436 5.20e-01 80 chrI:7033363-7033443 5.86e-01 80 chrIV:7643293-7643373 2.62e-02 31_[+1(2.40e-05)]_41 chrV:10822803-10822883 8.89e-01 80 chrIII:13127306-13127386 5.61e-01 80 chrI:7030004-7030084 4.67e-01 80 chrI:7026530-7026610 1.41e-01 35_[+5(1.63e-05)]_37 chrIII:13216750-13216830 2.36e-01 80 chrIV:7659613-7659693 8.78e-02 80 chrV:11697643-11697723 5.75e-01 80 chrX:11463769-11463849 7.87e-05 18_[+3(2.66e-06)]_54 chrV:11986641-11986721 1.18e-01 80 chrI:7034693-7034773 9.70e-01 80 chrIV:8107469-8107549 5.75e-01 80 chrII:6821218-6821298 4.70e-01 80 chrX:17034337-17034417 1.36e-01 80 chrX:8918932-8919012 2.71e-01 80 chrIV:8069212-8069292 2.30e-01 80 chrIV:7620634-7620714 3.45e-02 11_[+1(2.40e-05)]_29_[+1(4.07e-05)]_\ 24 chrV:14140900-14140980 1.99e-01 80 chrI:7031590-7031670 1.80e-03 35_[+1(4.07e-05)]_37 chrV:1350016-1350096 4.04e-02 80 chrIII:9271674-9271754 2.93e-01 80 chrII:7555605-7555685 1.77e-03 59_[+5(4.89e-05)]_13 chrX:14503408-14503488 8.93e-01 80 chrI:8116146-8116226 8.41e-02 16_[+1(2.40e-05)]_56 chrX:4500304-4500384 3.66e-01 80 chrIII:12014653-12014733 7.66e-01 80 chrIV:8094323-8094403 6.16e-01 80 chrX:12081019-12081099 5.56e-01 80 chrV:14004528-14004608 1.06e-02 [+1(6.89e-05)]_72 chrIV:6836904-6836984 1.50e-01 80 chrIII:895712-895792 6.64e-01 80 chrIII:9664689-9664769 1.91e-02 60_[+3(4.17e-05)]_12 chrIV:13013401-13013481 4.44e-03 62_[+5(1.63e-05)]_10 chrI:7342589-7342669 9.51e-01 80 chrIII:11743834-11743914 1.91e-01 80 chrIII:12843033-12843113 2.21e-01 80 chrII:6994851-6994931 1.94e-01 80 chrIII:11814864-11814944 3.70e-02 80 chrIII:9698705-9698785 1.46e-03 34_[+1(2.40e-05)]_38 chrX:8418594-8418674 1.84e-01 80 chrI:7233178-7233258 8.82e-01 80 chrX:6248835-6248915 1.05e-01 80 chrII:7850726-7850806 5.14e-03 26_[+5(2.06e-05)]_46 chrX:13745740-13745820 4.25e-01 80 chrII:8751166-8751246 1.64e-02 39_[+3(2.53e-05)]_33 chrX:5213203-5213283 9.38e-01 80 chrIII:8811288-8811368 9.55e-01 80 chrI:5410823-5410903 2.08e-01 80 chrV:5089945-5090025 2.77e-01 80 chrII:11928868-11928948 3.38e-01 80 chrIV:12114684-12114764 3.38e-03 69_[+1(5.73e-05)]_3 chrIII:12847809-12847889 1.91e-01 80 chrI:9962939-9963019 1.10e-01 80 chrX:3838767-3838847 6.70e-03 21_[+5(1.63e-05)]_51 chrV:6233039-6233119 5.21e-01 80 chrII:3956925-3957005 2.56e-01 80 chrX:14069642-14069722 3.94e-01 80 chrX:17003819-17003899 3.68e-05 20_[+5(2.56e-05)]_33_[+3(2.66e-06)]_\ 11 chrX:5815536-5815616 6.93e-04 46_[+3(6.51e-06)]_26 chrI:9200041-9200121 2.47e-01 80 chrIII:11742292-11742372 6.63e-02 80 chrX:5837150-5837230 4.88e-01 80 chrIII:13071749-13071829 1.74e-03 2_[+4(1.02e-05)]_70 chrX:9228563-9228643 8.19e-02 8_[+2(2.19e-05)]_64 chrIV:7588694-7588774 4.35e-01 80 chrIV:9092176-9092256 1.56e-02 18_[+2(3.78e-05)]_54 chrI:7033573-7033653 9.51e-01 80 chrIV:15017165-15017245 4.42e-03 40_[+1(2.40e-05)]_32 chrV:4918815-4918895 9.51e-02 80 chrI:8116992-8117072 3.57e-02 80 chrIII:9661297-9661377 2.31e-02 45_[+2(3.78e-05)]_27 chrIV:4586175-4586255 2.99e-01 80 chrV:10722328-10722408 4.79e-02 16_[+1(2.40e-05)]_56 chrIII:11738618-11738698 6.16e-02 43_[+3(2.53e-05)]_29 chrIII:13182160-13182240 2.60e-02 4_[+4(1.02e-05)]_68 chrX:12164203-12164283 6.85e-01 80 chrII:11065562-11065642 1.41e-02 80 chrIV:9615655-9615735 6.39e-01 80 chrIII:7950383-7950463 8.17e-03 21_[+3(4.17e-05)]_51 chrII:6835696-6835776 5.89e-02 80 chrIII:3797242-3797322 2.66e-01 80 chrV:10875307-10875387 2.52e-01 80 chrIII:12588141-12588221 1.44e-05 15_[+1(2.40e-05)]_2_[+3(2.66e-06)]_\ 47 chrV:7437590-7437670 2.97e-01 80 chrIV:1766137-1766217 6.71e-03 1_[+3(6.76e-05)]_71 chrII:6498763-6498843 1.62e-03 80 chrX:17521526-17521606 5.60e-01 80 chrX:11665775-11665855 4.34e-01 80 chrX:11482298-11482378 8.10e-01 80 chrV:10727808-10727888 1.27e-01 72_[+1(2.40e-05)] chrII:8717771-8717851 8.58e-01 80 chrV:9194223-9194303 1.22e-02 32_[+1(6.89e-05)]_40 chrI:9955960-9956040 1.51e-02 80 chrX:5515645-5515725 2.16e-02 80 chrV:4357520-4357600 1.16e-02 72_[+3(2.53e-05)] chrII:6175069-6175149 4.56e-03 80 chrII:301209-301289 1.08e-01 53_[+2(3.78e-05)]_19 chrX:5031967-5032047 8.23e-01 80 chrI:1000964-1001044 7.57e-02 26_[+4(1.02e-05)]_46 chrIII:12082216-12082296 1.05e-04 65_[+3(4.86e-05)]_7 chrIV:10405207-10405287 2.72e-02 80 chrII:6823391-6823471 5.50e-01 80 chrII:14407909-14407989 9.53e-01 80 chrIII:12849362-12849442 8.55e-02 80 chrII:4584445-4584525 9.08e-01 80 chrIII:12800719-12800799 4.19e-02 13_[+1(6.89e-05)]_59 chrIII:11624969-11625049 1.01e-01 80 chrV:8039349-8039429 1.07e-01 80 chrIV:11354082-11354162 8.28e-02 80 chrX:16484808-16484888 1.92e-03 80 chrIII:7296223-7296303 4.52e-01 80 chrX:12198406-12198486 5.43e-01 80 chrIII:12827278-12827358 6.62e-02 80 chrX:2852018-2852098 9.46e-01 80 chrII:8585445-8585525 9.07e-02 19_[+1(6.89e-05)]_[+1(6.89e-05)]_45 chrIV:6959627-6959707 1.75e-02 58_[+4(1.02e-05)]_14 chrIII:7812717-7812797 1.12e-03 1_[+5(4.64e-06)]_71 chrII:6838442-6838522 4.12e-03 52_[+3(5.55e-05)]_20 chrX:12187599-12187679 7.16e-01 80 chrIII:4005513-4005593 9.29e-01 80 chrII:9030649-9030729 3.01e-02 34_[+1(2.40e-05)]_38 chrIII:7724492-7724572 8.86e-01 80 chrX:9938375-9938455 2.95e-01 80 chrIII:11794716-11794796 5.68e-02 43_[+2(2.19e-05)]_29 chrX:5117696-5117776 2.72e-02 36_[+1(2.40e-05)]_36 chrV:5088459-5088539 1.38e-02 42_[+3(3.37e-05)]_30 chrV:13345976-13346056 4.28e-01 80 chrI:7993412-7993492 8.98e-02 80 chrII:11762043-11762123 7.96e-01 80 chrIV:12397012-12397092 1.00e-02 17_[+5(3.65e-05)]_55 chrX:12184631-12184711 1.86e-02 80 chrII:5704577-5704657 8.06e-01 80 chrX:2590920-2591000 5.11e-03 2_[+3(1.42e-05)]_70 chrI:13501041-13501121 8.02e-01 80 chrIV:4022568-4022648 5.46e-02 80 chrIII:4600492-4600572 9.76e-03 4_[+1(4.07e-05)]_68 chrX:16324383-16324463 2.45e-02 80 chrI:7761528-7761608 6.04e-01 80 chrX:3191974-3192054 3.45e-01 80 chrI:7517573-7517653 4.31e-05 69_[+2(2.19e-05)]_3 chrV:14368386-14368466 1.92e-02 10_[+4(1.02e-05)]_62 chrV:13243407-13243487 7.44e-03 10_[+3(8.13e-05)]_62 chrIII:5421664-5421744 3.39e-02 80 chrX:4137895-4137975 3.88e-01 80 chrIII:5291014-5291094 3.68e-01 80 chrIV:6751346-6751426 8.71e-01 80 chrX:1062810-1062890 3.21e-02 31_[+1(4.07e-05)]_41 chrIII:5760818-5760898 9.66e-01 80 chrV:11533138-11533218 6.14e-02 25_[+1(5.73e-05)]_47 chrI:5889357-5889437 1.03e-01 39_[+4(8.30e-05)]_33 chrI:10541762-10541842 1.60e-03 9_[+2(3.78e-05)]_63 chrV:8201356-8201436 5.81e-01 80 chrV:14506875-14506955 4.66e-01 80 chrIV:9090126-9090206 9.68e-01 80 chrV:12537705-12537785 1.43e-01 80 chrX:12160442-12160522 4.33e-01 80 chrIII:12178190-12178270 2.44e-01 80 chrIII:12839061-12839141 1.12e-03 80 chrX:13975497-13975577 4.06e-01 80 chrV:2134498-2134578 5.34e-02 65_[+3(3.37e-05)]_7 chrIII:6132293-6132373 1.04e-01 80 chrX:4551236-4551316 2.42e-01 80 chrII:8483953-8484033 1.29e-01 80 chrII:7800148-7800228 1.66e-01 80 chrII:5463973-5464053 2.18e-01 80 chrIV:6653760-6653840 4.85e-02 14_[+2(3.78e-05)]_58 chrX:2140415-2140495 4.73e-04 12_[+3(4.17e-05)]_60 chrX:7040962-7041042 1.11e-04 31_[+5(4.64e-06)]_41 chrII:11337827-11337907 4.60e-01 80 chrII:6707667-6707747 7.06e-02 80 chrI:2659735-2659815 1.00e-01 2_[+2(3.78e-05)]_70 chrV:18710138-18710218 9.63e-01 80 chrX:11466015-11466095 5.98e-01 80 chrX:17562387-17562467 5.77e-01 80 chrV:12530306-12530386 2.28e-01 80 chrII:6825893-6825973 1.95e-01 80 chrII:12239581-12239661 4.97e-01 80 chrX:17424453-17424533 5.57e-01 80 chrIII:11663572-11663652 7.07e-02 80 chrI:7340475-7340555 8.82e-01 80 chrV:8662399-8662479 1.82e-02 40_[+1(6.89e-05)]_32 chrV:14001994-14002074 2.46e-01 80 chrX:5949289-5949369 7.17e-02 57_[+4(8.30e-05)]_15 chrI:4908216-4908296 3.37e-01 80 chrI:5937101-5937181 7.75e-01 80 chrX:13502367-13502447 2.87e-02 7_[+1(2.40e-05)]_65 chrI:999187-999267 8.20e-04 21_[+4(1.02e-05)]_51 chrI:9787707-9787787 8.21e-02 28_[+1(2.40e-05)]_44 chrII:10373678-10373758 7.25e-01 80 chrIV:7641635-7641715 8.28e-01 80 chrIV:12037077-12037157 7.65e-01 80 chrV:8658755-8658835 9.92e-01 80 chrI:7858398-7858478 8.69e-01 80 chrX:12204447-12204527 2.63e-01 80 chrII:5708275-5708355 7.43e-01 80 chrIII:13258334-13258414 4.09e-03 39_[+5(1.63e-05)]_33 chrIII:9269328-9269408 9.05e-02 80 chrV:6351168-6351248 4.86e-01 80 chrII:8746288-8746368 4.41e-01 80 chrIV:12535554-12535634 4.18e-01 80 chrIII:11641493-11641573 4.13e-01 80 chrII:4876208-4876288 3.27e-01 80 chrIV:7727970-7728050 1.81e-01 80 chrI:7035820-7035900 5.66e-02 80 chrIII:11455697-11455777 6.25e-02 80 chrI:8261835-8261915 5.54e-01 80 chrI:8119363-8119443 1.92e-03 1_[+1(5.73e-05)]_71 chrII:1233126-1233206 5.07e-01 80 chrIII:8689860-8689940 3.61e-01 80 chrV:8460931-8461011 3.28e-04 51_[+4(1.02e-05)]_21 chrIV:8112808-8112888 5.31e-01 80 chrX:5704108-5704188 2.89e-01 80 chrI:10751723-10751803 6.52e-01 80 chrIV:10398386-10398466 2.82e-02 63_[+1(5.73e-05)]_9 chrIII:13215931-13216011 2.88e-01 80 chrX:8307688-8307768 1.40e-02 80 chrIII:11834396-11834476 1.85e-01 80 chrV:12354604-12354684 6.35e-01 80 chrX:14566207-14566287 9.57e-01 80 chrV:4508259-4508339 2.99e-04 60_[+5(1.63e-05)]_12 chrIV:13015942-13016022 3.15e-02 25_[+2(3.78e-05)]_47 chrIII:4070365-4070445 1.24e-01 80 chrIV:6833767-6833847 7.67e-02 80 chrIII:12611339-12611419 5.55e-01 80 chrIV:7903536-7903616 4.88e-04 6_[+4(1.02e-05)]_66 chrIII:3139311-3139391 1.84e-01 80 chrII:8409682-8409762 1.84e-02 18_[+3(9.31e-05)]_54 chrIII:12841510-12841590 4.16e-03 21_[+1(2.40e-05)]_51 chrV:14495706-14495786 2.79e-01 80 chrX:7438168-7438248 9.62e-01 80 chrIII:3543252-3543332 7.92e-03 45_[+3(2.53e-05)]_27 chrX:6894308-6894388 1.40e-01 46_[+1(4.07e-05)]_26 chrIV:8947335-8947415 1.75e-01 5_[+1(5.73e-05)]_67 chrIII:7784250-7784330 4.09e-01 80 chrX:12178578-12178658 8.73e-02 80 chrIII:11334451-11334531 1.46e-03 65_[+4(1.02e-05)]_7 chrII:8817427-8817507 7.78e-01 80 chrX:6250970-6251050 9.89e-03 80 chrIV:13028165-13028245 3.99e-01 80 chrX:2216764-2216844 2.96e-01 80 chrII:6824075-6824155 2.96e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************