******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/sem-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:4003-4083 1.0000 80 chrM:153-233 1.0000 80 chrI:5205474-5205554 1.0000 80 chrIV:8334424-8334504 1.0000 80 chrI:10438545-10438625 1.0000 80 chrX:17288518-17288598 1.0000 80 chrM:9731-9811 1.0000 80 chrII:11537869-11537949 1.0000 80 chrM:5559-5639 1.0000 80 chrM:7638-7718 1.0000 80 chrIV:8334627-8334707 1.0000 80 chrM:2771-2851 1.0000 80 chrV:1230609-1230689 1.0000 80 chrII:11622753-11622833 1.0000 80 chrIV:7486729-7486809 1.0000 80 chrX:1602789-1602869 1.0000 80 chrII:5667687-5667767 1.0000 80 chrIII:4626263-4626343 1.0000 80 chrM:11403-11483 1.0000 80 chrIV:7487787-7487867 1.0000 80 chrI:5210028-5210108 1.0000 80 chrV:8535533-8535613 1.0000 80 chrIII:1213155-1213235 1.0000 80 chrX:7470018-7470098 1.0000 80 chrIII:12688707-12688787 1.0000 80 chrX:12337965-12338045 1.0000 80 chrI:3567589-3567669 1.0000 80 chrM:9430-9510 1.0000 80 chrIV:11407235-11407315 1.0000 80 chrIII:445760-445840 1.0000 80 chrI:5206496-5206576 1.0000 80 chrI:6151626-6151706 1.0000 80 chrV:13869054-13869134 1.0000 80 chrM:9952-10032 1.0000 80 chrIII:11560726-11560806 1.0000 80 chrII:11535694-11535774 1.0000 80 chrII:13915464-13915544 1.0000 80 chrI:12061828-12061908 1.0000 80 chrIII:3500002-3500082 1.0000 80 chrX:16602614-16602694 1.0000 80 chrI:2827038-2827118 1.0000 80 chrIV:2657509-2657589 1.0000 80 chrI:2730197-2730277 1.0000 80 chrX:8156098-8156178 1.0000 80 chrX:8818129-8818209 1.0000 80 chrIV:178837-178917 1.0000 80 chrII:8222718-8222798 1.0000 80 chrII:2966716-2966796 1.0000 80 chrII:6898147-6898227 1.0000 80 chrIV:3807826-3807906 1.0000 80 chrM:8306-8386 1.0000 80 chrII:14249611-14249691 1.0000 80 chrV:20670744-20670824 1.0000 80 chrV:14876406-14876486 1.0000 80 chrIII:9706865-9706945 1.0000 80 chrI:5611703-5611783 1.0000 80 chrIII:1218365-1218445 1.0000 80 chrI:11584855-11584935 1.0000 80 chrII:15218039-15218119 1.0000 80 chrV:14011575-14011655 1.0000 80 chrV:16622087-16622167 1.0000 80 chrV:14689478-14689558 1.0000 80 chrIV:9774268-9774348 1.0000 80 chrIII:13225151-13225231 1.0000 80 chrI:2821380-2821460 1.0000 80 chrX:2885524-2885604 1.0000 80 chrIII:1052203-1052283 1.0000 80 chrIV:13893280-13893360 1.0000 80 chrX:17609900-17609980 1.0000 80 chrIII:10670129-10670209 1.0000 80 chrX:15516003-15516083 1.0000 80 chrI:4948025-4948105 1.0000 80 chrII:15264695-15264775 1.0000 80 chrI:7715706-7715786 1.0000 80 chrIV:4001686-4001766 1.0000 80 chrIII:3611616-3611696 1.0000 80 chrIII:13722533-13722613 1.0000 80 chrII:6844650-6844730 1.0000 80 chrV:10716950-10717030 1.0000 80 chrV:6485324-6485404 1.0000 80 chrIII:3620838-3620918 1.0000 80 chrIII:2535171-2535251 1.0000 80 chrX:11033060-11033140 1.0000 80 chrM:2096-2176 1.0000 80 chrV:12331964-12332044 1.0000 80 chrX:6737438-6737518 1.0000 80 chrI:11609203-11609283 1.0000 80 chrI:1575692-1575772 1.0000 80 chrI:11579766-11579846 1.0000 80 chrX:3348023-3348103 1.0000 80 chrIV:3337414-3337494 1.0000 80 chrI:6581307-6581387 1.0000 80 chrIII:13032614-13032694 1.0000 80 chrII:4130408-4130488 1.0000 80 chrII:15226340-15226420 1.0000 80 chrX:5354625-5354705 1.0000 80 chrX:15668243-15668323 1.0000 80 chrV:14855808-14855888 1.0000 80 chrIII:4428930-4429010 1.0000 80 chrX:12692151-12692231 1.0000 80 chrI:7543533-7543613 1.0000 80 chrV:19430583-19430663 1.0000 80 chrII:5293470-5293550 1.0000 80 chrIII:8650344-8650424 1.0000 80 chrX:3994612-3994692 1.0000 80 chrV:4435611-4435691 1.0000 80 chrI:9176246-9176326 1.0000 80 chrIV:11928542-11928622 1.0000 80 chrIII:6805596-6805676 1.0000 80 chrII:8415781-8415861 1.0000 80 chrIV:2802338-2802418 1.0000 80 chrX:2731625-2731705 1.0000 80 chrIII:13654997-13655077 1.0000 80 chrX:3914416-3914496 1.0000 80 chrII:7001610-7001690 1.0000 80 chrV:19723026-19723106 1.0000 80 chrI:6136531-6136611 1.0000 80 chrV:16042804-16042884 1.0000 80 chrV:4666976-4667056 1.0000 80 chrIV:1514558-1514638 1.0000 80 chrIII:9104226-9104306 1.0000 80 chrI:9051279-9051359 1.0000 80 chrIII:4278141-4278221 1.0000 80 chrX:4789079-4789159 1.0000 80 chrI:2728838-2728918 1.0000 80 chrX:8159266-8159346 1.0000 80 chrV:14828614-14828694 1.0000 80 chrI:6289718-6289798 1.0000 80 chrIV:4412091-4412171 1.0000 80 chrX:14229603-14229683 1.0000 80 chrIV:842735-842815 1.0000 80 chrIII:13651545-13651625 1.0000 80 chrM:4690-4770 1.0000 80 chrIII:3664377-3664457 1.0000 80 chrIV:3233028-3233108 1.0000 80 chrIII:7030574-7030654 1.0000 80 chrV:13176490-13176570 1.0000 80 chrI:11771129-11771209 1.0000 80 chrX:16928281-16928361 1.0000 80 chrIII:1824692-1824772 1.0000 80 chrI:933434-933514 1.0000 80 chrIII:13721248-13721328 1.0000 80 chrIII:6133595-6133675 1.0000 80 chrX:9296767-9296847 1.0000 80 chrIV:1981099-1981179 1.0000 80 chrX:13653704-13653784 1.0000 80 chrII:9308930-9309010 1.0000 80 chrIV:11605037-11605117 1.0000 80 chrV:15013031-15013111 1.0000 80 chrIII:5675487-5675567 1.0000 80 chrI:12065867-12065947 1.0000 80 chrIII:13713217-13713297 1.0000 80 chrV:12038636-12038716 1.0000 80 chrM:9219-9299 1.0000 80 chrM:2971-3051 1.0000 80 chrX:11210517-11210597 1.0000 80 chrII:10989351-10989431 1.0000 80 chrIV:16398370-16398450 1.0000 80 chrV:7231010-7231090 1.0000 80 chrI:13421123-13421203 1.0000 80 chrI:9374744-9374824 1.0000 80 chrII:10545339-10545419 1.0000 80 chrX:16342382-16342462 1.0000 80 chrX:13415084-13415164 1.0000 80 chrI:6724438-6724518 1.0000 80 chrX:8796824-8796904 1.0000 80 chrI:12229268-12229348 1.0000 80 chrIV:13031121-13031201 1.0000 80 chrII:3567732-3567812 1.0000 80 chrX:13145046-13145126 1.0000 80 chrX:12367678-12367758 1.0000 80 chrIII:1122427-1122507 1.0000 80 chrI:1175810-1175890 1.0000 80 chrI:9268945-9269025 1.0000 80 chrX:5056377-5056457 1.0000 80 chrI:2831598-2831678 1.0000 80 chrX:14115659-14115739 1.0000 80 chrIII:13713946-13714026 1.0000 80 chrII:4585585-4585665 1.0000 80 chrM:956-1036 1.0000 80 chrIV:2639792-2639872 1.0000 80 chrI:2299615-2299695 1.0000 80 chrX:12890232-12890312 1.0000 80 chrV:2673980-2674060 1.0000 80 chrX:2368721-2368801 1.0000 80 chrX:3678748-3678828 1.0000 80 chrIII:4426766-4426846 1.0000 80 chrV:6551827-6551907 1.0000 80 chrII:14248311-14248391 1.0000 80 chrII:14635404-14635484 1.0000 80 chrIII:10651740-10651820 1.0000 80 chrX:6286311-6286391 1.0000 80 chrII:8128887-8128967 1.0000 80 chrIII:8653075-8653155 1.0000 80 chrIII:535387-535467 1.0000 80 chrX:16551451-16551531 1.0000 80 chrX:14804879-14804959 1.0000 80 chrI:9605736-9605816 1.0000 80 chrIII:9704058-9704138 1.0000 80 chrV:4499302-4499382 1.0000 80 chrI:2935743-2935823 1.0000 80 chrV:15554000-15554080 1.0000 80 chrIII:7642156-7642236 1.0000 80 chrX:8386166-8386246 1.0000 80 chrX:12629454-12629534 1.0000 80 chrII:6248660-6248740 1.0000 80 chrIV:16389262-16389342 1.0000 80 chrIV:3520965-3521045 1.0000 80 chrIV:128557-128637 1.0000 80 chrX:15274255-15274335 1.0000 80 chrII:11959329-11959409 1.0000 80 chrX:3694308-3694388 1.0000 80 chrIII:3623799-3623879 1.0000 80 chrI:4132274-4132354 1.0000 80 chrV:4648121-4648201 1.0000 80 chrX:16157095-16157175 1.0000 80 chrII:5237801-5237881 1.0000 80 chrIII:10624730-10624810 1.0000 80 chrM:4908-4988 1.0000 80 chrX:8944244-8944324 1.0000 80 chrX:9078319-9078399 1.0000 80 chrV:3587828-3587908 1.0000 80 chrII:7708760-7708840 1.0000 80 chrIII:931612-931692 1.0000 80 chrIII:4947488-4947568 1.0000 80 chrX:6097694-6097774 1.0000 80 chrIV:1388237-1388317 1.0000 80 chrV:11239329-11239409 1.0000 80 chrII:5399322-5399402 1.0000 80 chrX:8971627-8971707 1.0000 80 chrI:6153712-6153792 1.0000 80 chrII:4942520-4942600 1.0000 80 chrX:5022812-5022892 1.0000 80 chrIV:16399237-16399317 1.0000 80 chrIII:8106642-8106722 1.0000 80 chrX:5319363-5319443 1.0000 80 chrI:13310339-13310419 1.0000 80 chrIII:10432241-10432321 1.0000 80 chrX:601546-601626 1.0000 80 chrX:5407341-5407421 1.0000 80 chrIII:12399900-12399980 1.0000 80 chrV:16699874-16699954 1.0000 80 chrIV:9316220-9316300 1.0000 80 chrII:1520018-1520098 1.0000 80 chrV:12510128-12510208 1.0000 80 chrIV:16400865-16400945 1.0000 80 chrV:14505970-14506050 1.0000 80 chrIV:9191330-9191410 1.0000 80 chrV:12780415-12780495 1.0000 80 chrIII:4414215-4414295 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_sem-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/sem-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.254 G 0.241 T 0.253 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.254 G 0.241 T 0.253 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-1 width = 8 sites = 15 llr = 151 E-value = 3.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2::::::: probability G 81a:a:a1 matrix T :9:a:a:9 bits 2.1 ***** 1.8 ***** 1.6 ****** 1.4 ******* Relative 1.2 ******** Entropy 1.0 ******** (14.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2831598-2831678 36 1.38e-05 AGAAGGCCCT GTGTGTGT GCGCAGGTGG chrIII:6133595-6133675 29 1.38e-05 gtgtgtgtgc gtgtgtgt atgtgtgtgG chrX:14229603-14229683 30 1.38e-05 gtgtgtgtgt gtgtgtgt gtgtgtgtgt chrII:4130408-4130488 34 1.38e-05 gtgtgtgtgt gtgtgtgt gtgtgtgtgt chrIII:10670129-10670209 33 1.38e-05 gtgtgtgtgt gtgtgtgt gtgtgtgtgt chrV:14689478-14689558 23 1.38e-05 CTTCAGTTTT GTGTGTGT CAGCGGCATC chrI:2827038-2827118 19 1.38e-05 GTCCAAACAT GTGTGTGT GGGGGGGGGG chrIII:445760-445840 8 1.38e-05 tgtgtgt gtgtgtgt gtAGGTAAGA chrI:3567589-3567669 73 1.38e-05 Atgtgtgtgt gtgtgtgt chrV:15013031-15013111 34 2.84e-05 CACCGACCTT CTGTGTGT TAGACAGATG chrX:8156098-8156178 57 2.84e-05 GTTGTATAGG CTGTGTGT TCTCCTATTA chrI:6151626-6151706 72 2.84e-05 ATCCAATATA CTGTGTGT G chrV:12038636-12038716 52 4.16e-05 GGCAAAGTAT GGGTGTGT TCCGGCACAC chrV:10716950-10717030 7 4.16e-05 TTGTAA GGGTGTGT ATGCGAGGCA chrX:16157095-16157175 1 5.47e-05 . gtgtgtgG CGCAGAAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2831598-2831678 1.4e-05 35_[+1]_37 chrIII:6133595-6133675 1.4e-05 28_[+1]_44 chrX:14229603-14229683 1.4e-05 29_[+1]_43 chrII:4130408-4130488 1.4e-05 33_[+1]_39 chrIII:10670129-10670209 1.4e-05 32_[+1]_40 chrV:14689478-14689558 1.4e-05 22_[+1]_50 chrI:2827038-2827118 1.4e-05 18_[+1]_54 chrIII:445760-445840 1.4e-05 7_[+1]_65 chrI:3567589-3567669 1.4e-05 72_[+1] chrV:15013031-15013111 2.8e-05 33_[+1]_39 chrX:8156098-8156178 2.8e-05 56_[+1]_16 chrI:6151626-6151706 2.8e-05 71_[+1]_1 chrV:12038636-12038716 4.2e-05 51_[+1]_21 chrV:10716950-10717030 4.2e-05 6_[+1]_66 chrX:16157095-16157175 5.5e-05 [+1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=15 chrI:2831598-2831678 ( 36) GTGTGTGT 1 chrIII:6133595-6133675 ( 29) GTGTGTGT 1 chrX:14229603-14229683 ( 30) GTGTGTGT 1 chrII:4130408-4130488 ( 34) GTGTGTGT 1 chrIII:10670129-10670209 ( 33) GTGTGTGT 1 chrV:14689478-14689558 ( 23) GTGTGTGT 1 chrI:2827038-2827118 ( 19) GTGTGTGT 1 chrIII:445760-445840 ( 8) GTGTGTGT 1 chrI:3567589-3567669 ( 73) GTGTGTGT 1 chrV:15013031-15013111 ( 34) CTGTGTGT 1 chrX:8156098-8156178 ( 57) CTGTGTGT 1 chrI:6151626-6151706 ( 72) CTGTGTGT 1 chrV:12038636-12038716 ( 52) GGGTGTGT 1 chrV:10716950-10717030 ( 7) GGGTGTGT 1 chrX:16157095-16157175 ( 1) GTGTGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 3.1e-001 -1055 -34 173 -1055 -1055 -1055 -85 178 -1055 -1055 205 -1055 -1055 -1055 -1055 198 -1055 -1055 205 -1055 -1055 -1055 -1055 198 -1055 -1055 205 -1055 -1055 -1055 -185 188 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.1e-001 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.133333 0.866667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.066667 0.933333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-1 regular expression -------------------------------------------------------------------------------- [GC]TGTGTGT -------------------------------------------------------------------------------- Time 8.20 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 13 llr = 139 E-value = 4.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a:2::a matrix T a:::8::: bits 2.1 **** *** 1.8 **** *** 1.6 **** *** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5237801-5237881 68 1.52e-05 ACAGCCGCCA TAGCTCAG TCGGT chrX:14804879-14804959 5 1.52e-05 GGTA TAGCTCAG TGGCAGAGCA chrX:16551451-16551531 67 1.52e-05 TGTGCCTCGA TAGCTCAG TTGGGA chrIII:535387-535467 2 1.52e-05 A TAGCTCAG TTGGTAGAGC chrX:6286311-6286391 17 1.52e-05 TGCGGGGGTA TAGCTCAG GGGTAGAGCG chrIV:16398370-16398450 21 1.52e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:13653704-13653784 31 1.52e-05 GTCGCCCTTA TAGCTCAG TGGTAGAGCG chrX:4789079-4789159 60 1.52e-05 TGGGCCTCCT TAGCTCAG TTGGTAGAGC chrI:6136531-6136611 73 1.52e-05 GCCGCCCGGT TAGCTCAG chrII:7001610-7001690 24 1.52e-05 GTTACCTGTG TAGCTCAG GGGTAGAGCG chrV:14689478-14689558 61 1.52e-05 ATGCCGTCGA TAGCTCAG TTGGTAGAGC chrIII:8106642-8106722 18 2.97e-05 GCCGCTTCCG TAGCGCAG TAGGCAGCGC chrIII:1122427-1122507 14 2.97e-05 TGTTGCCGTT TAGCGCAG GCGGGAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5237801-5237881 1.5e-05 67_[+2]_5 chrX:14804879-14804959 1.5e-05 4_[+2]_68 chrX:16551451-16551531 1.5e-05 66_[+2]_6 chrIII:535387-535467 1.5e-05 1_[+2]_71 chrX:6286311-6286391 1.5e-05 16_[+2]_56 chrIV:16398370-16398450 1.5e-05 20_[+2]_52 chrX:13653704-13653784 1.5e-05 30_[+2]_42 chrX:4789079-4789159 1.5e-05 59_[+2]_13 chrI:6136531-6136611 1.5e-05 72_[+2] chrII:7001610-7001690 1.5e-05 23_[+2]_49 chrV:14689478-14689558 1.5e-05 60_[+2]_12 chrIII:8106642-8106722 3e-05 17_[+2]_55 chrIII:1122427-1122507 3e-05 13_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=13 chrII:5237801-5237881 ( 68) TAGCTCAG 1 chrX:14804879-14804959 ( 5) TAGCTCAG 1 chrX:16551451-16551531 ( 67) TAGCTCAG 1 chrIII:535387-535467 ( 2) TAGCTCAG 1 chrX:6286311-6286391 ( 17) TAGCTCAG 1 chrIV:16398370-16398450 ( 21) TAGCTCAG 1 chrX:13653704-13653784 ( 31) TAGCTCAG 1 chrX:4789079-4789159 ( 60) TAGCTCAG 1 chrI:6136531-6136611 ( 73) TAGCTCAG 1 chrII:7001610-7001690 ( 24) TAGCTCAG 1 chrV:14689478-14689558 ( 61) TAGCTCAG 1 chrIII:8106642-8106722 ( 18) TAGCGCAG 1 chrIII:1122427-1122507 ( 14) TAGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 4.1e-002 -1035 -1035 -1035 198 199 -1035 -1035 -1035 -1035 -1035 205 -1035 -1035 198 -1035 -1035 -1035 -1035 -65 174 -1035 198 -1035 -1035 199 -1035 -1035 -1035 -1035 -1035 205 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.1e-002 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.153846 0.846154 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 11.98 secs. ******************************************************************************** ******************************************************************************** MOTIF GTAGAGCG MEME-3 width = 8 sites = 9 llr = 96 E-value = 9.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:a::: pos.-specific C :2::::a: probability G a::a:a:a matrix T :8:::::: bits 2.1 * ****** 1.8 * ****** 1.6 * ****** 1.4 * ****** Relative 1.2 ******** Entropy 1.0 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTAGAGCG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:535387-535467 13 1.38e-05 AGCTCAGTTG GTAGAGCG GAGGACTGTA chrX:6286311-6286391 27 1.38e-05 TAGCTCAGGG GTAGAGCG CTCGCTTTGC chrIV:16398370-16398450 31 1.38e-05 TAGCTCAGTG GTAGAGCG CTCCCTTAGC chrX:13653704-13653784 41 1.38e-05 TAGCTCAGTG GTAGAGCG TTGGTCTTGT chrX:4789079-4789159 71 1.38e-05 AGCTCAGTTG GTAGAGCG TG chrII:7001610-7001690 34 1.38e-05 TAGCTCAGGG GTAGAGCG CTCGCTTTGC chrV:14689478-14689558 72 1.38e-05 AGCTCAGTTG GTAGAGCG G chrV:2673980-2674060 47 2.76e-05 TGGCTCAGTG GCAGAGCG TCTGTCTAGT chrIV:8334424-8334504 71 2.76e-05 CTTCTCATCC GCAGAGCG CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:535387-535467 1.4e-05 12_[+3]_60 chrX:6286311-6286391 1.4e-05 26_[+3]_46 chrIV:16398370-16398450 1.4e-05 30_[+3]_42 chrX:13653704-13653784 1.4e-05 40_[+3]_32 chrX:4789079-4789159 1.4e-05 70_[+3]_2 chrII:7001610-7001690 1.4e-05 33_[+3]_39 chrV:14689478-14689558 1.4e-05 71_[+3]_1 chrV:2673980-2674060 2.8e-05 46_[+3]_26 chrIV:8334424-8334504 2.8e-05 70_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTAGAGCG width=8 seqs=9 chrIII:535387-535467 ( 13) GTAGAGCG 1 chrX:6286311-6286391 ( 27) GTAGAGCG 1 chrIV:16398370-16398450 ( 31) GTAGAGCG 1 chrX:13653704-13653784 ( 41) GTAGAGCG 1 chrX:4789079-4789159 ( 71) GTAGAGCG 1 chrII:7001610-7001690 ( 34) GTAGAGCG 1 chrV:14689478-14689558 ( 72) GTAGAGCG 1 chrV:2673980-2674060 ( 47) GCAGAGCG 1 chrIV:8334424-8334504 ( 71) GCAGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 9.6e+002 -982 -982 205 -982 -982 -19 -982 162 199 -982 -982 -982 -982 -982 205 -982 199 -982 -982 -982 -982 -982 205 -982 -982 198 -982 -982 -982 -982 205 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 9.6e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.000000 0.777778 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGAGCG MEME-3 regular expression -------------------------------------------------------------------------------- G[TC]AGAGCG -------------------------------------------------------------------------------- Time 15.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GRATCGAA MEME-4 width = 8 sites = 28 llr = 239 E-value = 1.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRATCGAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :65:::aa pos.-specific C 1:2:8::: probability G 941::a:: matrix T ::1a2::: bits 2.1 * *** 1.8 * *** 1.6 * * *** 1.4 * * *** Relative 1.2 * ***** Entropy 1.0 ** ***** (12.3 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel GAATCGAA consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5022812-5022892 17 1.51e-05 CCTGCTGCTG GAATCGAA CCAGCGTCGC chrII:4942520-4942600 3 1.51e-05 GA GAATCGAA CTGGTGGACA chrIII:10624730-10624810 24 1.51e-05 CCTCATGCTG GAATCGAA CCAGCGACCT chrIII:7642156-7642236 14 1.51e-05 CCGTTGCGGG GAATCGAA CCCCGGCCTT chrIV:2639792-2639872 29 1.51e-05 CCCATGCCGG GAATCGAA ACCGGGCCGC chrX:8796824-8796904 10 1.51e-05 atcgaccgg gaatcgaa cccgggccgc chrX:16928281-16928361 2 1.51e-05 g gaatcgaa cccgggccgc chrIII:8650344-8650424 49 1.51e-05 GCCGAACCGG GAATCGAA CCCGGGACCT chrX:5319363-5319443 34 2.94e-05 CCCCAAACCA GGATCGAA CTGGTGACCT chrX:12337965-12338045 45 4.46e-05 ACCACGGCAG GACTCGAA CCTGCAATCC chrII:3567732-3567812 44 5.91e-05 CCCAATGCGG GGCTCGAA CCCGCGACAA chrV:15013031-15013111 15 5.91e-05 ATCTCGGGCG GGCTCGAA CCACCGACCT chrV:12331964-12332044 13 5.91e-05 CTCCCGGGTG GGCTCGAA CCACCAACCT chrIII:13225151-13225231 23 5.91e-05 CTCCCGGGTG GGCTCGAA CCACCAACCT chrX:8944244-8944324 27 7.35e-05 TTTCGATCTG GAGTCGAA CGCGCTACCA chrX:12890232-12890312 65 8.85e-05 GAGGCACGGG GAATTGAA CCCCGGAC chrIII:4428930-4429010 35 8.85e-05 GAGGTATGGG GAATTGAA CCCCAGCCCT chrV:6551827-6551907 39 1.17e-04 ATCAGGATGA GATTCGAA CTCACGCGGG chrX:13415084-13415164 48 1.17e-04 CCGCCAGCAG GGGTCGAA CCTGCGACCT chrIII:1218365-1218445 23 1.17e-04 CCGCCAGCAG GGGTCGAA CCTGCGACCT chrX:16602614-16602694 32 1.17e-04 AGGGGTGTGG GGGTCGAA CCATTAACCC chrI:13310339-13310419 18 1.32e-04 CCCCCACGCA GGATTGAA CTACGGACCT chrX:3914416-3914496 68 1.32e-04 ACTGCAGCGG GGATTGAA CCAGA chrX:8971627-8971707 33 1.46e-04 TGCCCGCGTA GGTTCGAA TCCTGCTGAC chrIII:535387-535467 57 1.46e-04 TTAGGTCACT GGTTCGAA TCCGGTTCGA chrI:9605736-9605816 49 1.61e-04 TAAGGAGTTG GACTTGAA ATCCAATGGG chrII:10545339-10545419 48 1.77e-04 CCACAAGTGT CAATCGAA TTCGATTGGC chrIV:178837-178917 36 1.77e-04 ATCAATCCTC CAATCGAA GCTCAAGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5022812-5022892 1.5e-05 16_[+4]_56 chrII:4942520-4942600 1.5e-05 2_[+4]_70 chrIII:10624730-10624810 1.5e-05 23_[+4]_49 chrIII:7642156-7642236 1.5e-05 13_[+4]_59 chrIV:2639792-2639872 1.5e-05 28_[+4]_44 chrX:8796824-8796904 1.5e-05 9_[+4]_63 chrX:16928281-16928361 1.5e-05 1_[+4]_71 chrIII:8650344-8650424 1.5e-05 48_[+4]_24 chrX:5319363-5319443 2.9e-05 33_[+4]_39 chrX:12337965-12338045 4.5e-05 44_[+4]_28 chrII:3567732-3567812 5.9e-05 43_[+4]_29 chrV:15013031-15013111 5.9e-05 14_[+4]_58 chrV:12331964-12332044 5.9e-05 12_[+4]_60 chrIII:13225151-13225231 5.9e-05 22_[+4]_50 chrX:8944244-8944324 7.4e-05 26_[+4]_46 chrX:12890232-12890312 8.9e-05 64_[+4]_8 chrIII:4428930-4429010 8.9e-05 34_[+4]_38 chrV:6551827-6551907 0.00012 38_[+4]_34 chrX:13415084-13415164 0.00012 47_[+4]_25 chrIII:1218365-1218445 0.00012 22_[+4]_50 chrX:16602614-16602694 0.00012 31_[+4]_41 chrI:13310339-13310419 0.00013 17_[+4]_55 chrX:3914416-3914496 0.00013 67_[+4]_5 chrX:8971627-8971707 0.00015 32_[+4]_40 chrIII:535387-535467 0.00015 56_[+4]_16 chrI:9605736-9605816 0.00016 48_[+4]_24 chrII:10545339-10545419 0.00018 47_[+4]_25 chrIV:178837-178917 0.00018 35_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRATCGAA width=8 seqs=28 chrX:5022812-5022892 ( 17) GAATCGAA 1 chrII:4942520-4942600 ( 3) GAATCGAA 1 chrIII:10624730-10624810 ( 24) GAATCGAA 1 chrIII:7642156-7642236 ( 14) GAATCGAA 1 chrIV:2639792-2639872 ( 29) GAATCGAA 1 chrX:8796824-8796904 ( 10) GAATCGAA 1 chrX:16928281-16928361 ( 2) GAATCGAA 1 chrIII:8650344-8650424 ( 49) GAATCGAA 1 chrX:5319363-5319443 ( 34) GGATCGAA 1 chrX:12337965-12338045 ( 45) GACTCGAA 1 chrII:3567732-3567812 ( 44) GGCTCGAA 1 chrV:15013031-15013111 ( 15) GGCTCGAA 1 chrV:12331964-12332044 ( 13) GGCTCGAA 1 chrIII:13225151-13225231 ( 23) GGCTCGAA 1 chrX:8944244-8944324 ( 27) GAGTCGAA 1 chrX:12890232-12890312 ( 65) GAATTGAA 1 chrIII:4428930-4429010 ( 35) GAATTGAA 1 chrV:6551827-6551907 ( 39) GATTCGAA 1 chrX:13415084-13415164 ( 48) GGGTCGAA 1 chrIII:1218365-1218445 ( 23) GGGTCGAA 1 chrX:16602614-16602694 ( 32) GGGTCGAA 1 chrI:13310339-13310419 ( 18) GGATTGAA 1 chrX:3914416-3914496 ( 68) GGATTGAA 1 chrX:8971627-8971707 ( 33) GGTTCGAA 1 chrIII:535387-535467 ( 57) GGTTCGAA 1 chrI:9605736-9605816 ( 49) GACTTGAA 1 chrII:10545339-10545419 ( 48) CAATCGAA 1 chrIV:178837-178917 ( 36) CAATCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 1.1e+001 -1145 -183 195 -1145 118 -1145 83 -1145 109 -24 -75 -124 -1145 -1145 -1145 198 -1145 170 -1145 -50 -1145 -1145 205 -1145 199 -1145 -1145 -1145 199 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.1e+001 0.000000 0.071429 0.928571 0.000000 0.571429 0.000000 0.428571 0.000000 0.535714 0.214286 0.142857 0.107143 0.000000 0.000000 0.000000 1.000000 0.000000 0.821429 0.000000 0.178571 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRATCGAA MEME-4 regular expression -------------------------------------------------------------------------------- G[AG][AC]TCGAA -------------------------------------------------------------------------------- Time 19.40 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAAGAGG MEME-5 width = 8 sites = 19 llr = 169 E-value = 5.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAAGAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a4a73a11 pos.-specific C :::::::: probability G :6:37:99 matrix T :::::::: bits 2.1 * * * 1.8 * * *** 1.6 * * *** 1.4 * * *** Relative 1.2 * * **** Entropy 1.0 ******** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAAGAGG consensus A GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAGAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3520965-3521045 42 1.36e-05 CCACGGATCC AGAAGAGG CCTTTACGGC chrI:2831598-2831678 71 1.36e-05 TAATAGCTGT AGAAGAGG TT chrII:8415781-8415861 30 1.36e-05 TCCGAAGAGA AGAAGAGG GTGGCTGATT chrI:6151626-6151706 21 1.36e-05 ACAACATAAA AGAAGAGG TGTACAGCCC chrI:11579766-11579846 28 2.78e-05 TCACAGTTAC AAAAGAGG GTCTAGAGAA chrI:5210028-5210108 47 2.78e-05 TTGGAGGTAG AAAAGAGG AAAAGTGTTC chrV:11239329-11239409 3 4.08e-05 GT AGAGGAGG CGGTGCCTCG chrX:9078319-9078399 65 4.08e-05 GCAGACTGGC AGAGGAGG TAACCGGC chrIII:3623799-3623879 68 4.08e-05 TGCGGGACGA AGAGGAGG CCAAA chrII:9308930-9309010 5 4.08e-05 TGAA AGAGGAGG AAGACGTCCG chrX:2885524-2885604 40 4.08e-05 GGAAGGAGAA AGAGGAGG ACGCTGCATA chrIV:11407235-11407315 1 4.08e-05 . AGAGGAGG AGTCAAGAGA chrIII:6133595-6133675 60 5.51e-05 AGCATAAGAG AGAAAAGG GACGTGGAAA chrI:7715706-7715786 60 5.51e-05 AGGCAATCGG AGAAAAGG AGACACACTC chrX:5319363-5319443 1 8.35e-05 . AAAAAAGG AGTACAAAAG chrII:4585585-4585665 40 8.35e-05 GAGAGGCGAG AAAAAAGG CGGTATTCCT chrIII:1218365-1218445 1 8.35e-05 . AAAAAAGG TTTGCCGCCA chrX:12890232-12890312 43 1.70e-04 CAAACAATGA AAAAGAGA TTTGGAGGCA chrM:153-233 29 1.70e-04 TGACCCTATA AAAAGAAG TTTTTTTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAGAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3520965-3521045 1.4e-05 41_[+5]_31 chrI:2831598-2831678 1.4e-05 70_[+5]_2 chrII:8415781-8415861 1.4e-05 29_[+5]_43 chrI:6151626-6151706 1.4e-05 20_[+5]_52 chrI:11579766-11579846 2.8e-05 27_[+5]_45 chrI:5210028-5210108 2.8e-05 46_[+5]_26 chrV:11239329-11239409 4.1e-05 2_[+5]_70 chrX:9078319-9078399 4.1e-05 64_[+5]_8 chrIII:3623799-3623879 4.1e-05 67_[+5]_5 chrII:9308930-9309010 4.1e-05 4_[+5]_68 chrX:2885524-2885604 4.1e-05 39_[+5]_33 chrIV:11407235-11407315 4.1e-05 [+5]_72 chrIII:6133595-6133675 5.5e-05 59_[+5]_13 chrI:7715706-7715786 5.5e-05 59_[+5]_13 chrX:5319363-5319443 8.4e-05 [+5]_72 chrII:4585585-4585665 8.4e-05 39_[+5]_33 chrIII:1218365-1218445 8.4e-05 [+5]_72 chrX:12890232-12890312 0.00017 42_[+5]_30 chrM:153-233 0.00017 28_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAGAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAAGAGG width=8 seqs=19 chrIV:3520965-3521045 ( 42) AGAAGAGG 1 chrI:2831598-2831678 ( 71) AGAAGAGG 1 chrII:8415781-8415861 ( 30) AGAAGAGG 1 chrI:6151626-6151706 ( 21) AGAAGAGG 1 chrI:11579766-11579846 ( 28) AAAAGAGG 1 chrI:5210028-5210108 ( 47) AAAAGAGG 1 chrV:11239329-11239409 ( 3) AGAGGAGG 1 chrX:9078319-9078399 ( 65) AGAGGAGG 1 chrIII:3623799-3623879 ( 68) AGAGGAGG 1 chrII:9308930-9309010 ( 5) AGAGGAGG 1 chrX:2885524-2885604 ( 40) AGAGGAGG 1 chrIV:11407235-11407315 ( 1) AGAGGAGG 1 chrIII:6133595-6133675 ( 60) AGAAAAGG 1 chrI:7715706-7715786 ( 60) AGAAAAGG 1 chrX:5319363-5319443 ( 1) AAAAAAGG 1 chrII:4585585-4585665 ( 40) AAAAAAGG 1 chrIII:1218365-1218445 ( 1) AAAAAAGG 1 chrX:12890232-12890312 ( 43) AAAAGAGA 1 chrM:153-233 ( 29) AAAAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAGAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 5.2e+004 199 -1089 -1089 -1089 55 -1089 139 -1089 199 -1089 -1089 -1089 144 -1089 39 -1089 6 -1089 161 -1089 199 -1089 -1089 -1089 -226 -1089 197 -1089 -226 -1089 197 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAGAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 5.2e+004 1.000000 0.000000 0.000000 0.000000 0.368421 0.000000 0.631579 0.000000 1.000000 0.000000 0.000000 0.000000 0.684211 0.000000 0.315789 0.000000 0.263158 0.000000 0.736842 0.000000 1.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.947368 0.000000 0.052632 0.000000 0.947368 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAGAGG MEME-5 regular expression -------------------------------------------------------------------------------- A[GA]A[AG][GA]AGG -------------------------------------------------------------------------------- Time 23.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:4003-4083 9.55e-01 80 chrM:153-233 4.01e-01 80 chrI:5205474-5205554 9.76e-01 80 chrIV:8334424-8334504 6.59e-02 70_[+3(2.76e-05)]_2 chrI:10438545-10438625 8.08e-01 80 chrX:17288518-17288598 9.49e-01 80 chrM:9731-9811 5.40e-01 80 chrII:11537869-11537949 8.98e-01 80 chrM:5559-5639 6.30e-01 80 chrM:7638-7718 8.85e-01 80 chrIV:8334627-8334707 7.93e-01 80 chrM:2771-2851 9.15e-01 80 chrV:1230609-1230689 9.80e-01 80 chrII:11622753-11622833 1.00e+00 80 chrIV:7486729-7486809 9.07e-01 80 chrX:1602789-1602869 7.12e-01 80 chrII:5667687-5667767 1.00e+00 80 chrIII:4626263-4626343 1.00e+00 80 chrM:11403-11483 5.48e-02 80 chrIV:7487787-7487867 7.42e-01 80 chrI:5210028-5210108 6.95e-02 46_[+5(2.78e-05)]_26 chrV:8535533-8535613 9.11e-01 80 chrIII:1213155-1213235 9.96e-01 80 chrX:7470018-7470098 3.39e-02 14_[+2(6.02e-05)]_58 chrIII:12688707-12688787 4.15e-01 80 chrX:12337965-12338045 1.38e-01 44_[+4(4.46e-05)]_28 chrI:3567589-3567669 6.52e-02 64_[+1(1.38e-05)]_[+1(1.38e-05)] chrM:9430-9510 9.75e-01 80 chrIV:11407235-11407315 8.01e-02 [+5(4.08e-05)]_72 chrIII:445760-445840 6.27e-03 1_[+1(1.38e-05)]_[+1(1.38e-05)]_63 chrI:5206496-5206576 9.82e-01 80 chrI:6151626-6151706 9.93e-04 20_[+5(1.36e-05)]_43_[+1(2.84e-05)]_\ 1 chrV:13869054-13869134 9.89e-01 80 chrM:9952-10032 8.87e-01 80 chrIII:11560726-11560806 6.47e-02 80 chrII:11535694-11535774 4.60e-01 80 chrII:13915464-13915544 7.77e-01 80 chrI:12061828-12061908 9.98e-01 80 chrIII:3500002-3500082 6.60e-01 80 chrX:16602614-16602694 2.08e-02 23_[+1(9.50e-05)]_49 chrI:2827038-2827118 5.44e-02 18_[+1(1.38e-05)]_54 chrIV:2657509-2657589 3.83e-01 80 chrI:2730197-2730277 5.06e-01 80 chrX:8156098-8156178 2.12e-01 56_[+1(2.84e-05)]_16 chrX:8818129-8818209 2.26e-01 80 chrIV:178837-178917 2.03e-01 80 chrII:8222718-8222798 3.26e-01 80 chrII:2966716-2966796 1.00e+00 80 chrII:6898147-6898227 8.26e-01 80 chrIV:3807826-3807906 1.49e-01 80 chrM:8306-8386 7.14e-01 80 chrII:14249611-14249691 8.68e-02 80 chrV:20670744-20670824 1.76e-01 80 chrV:14876406-14876486 9.49e-01 80 chrIII:9706865-9706945 2.87e-01 80 chrI:5611703-5611783 8.89e-01 80 chrIII:1218365-1218445 2.26e-02 [+5(8.35e-05)]_72 chrI:11584855-11584935 8.22e-01 80 chrII:15218039-15218119 8.57e-01 80 chrV:14011575-14011655 1.00e+00 80 chrV:16622087-16622167 4.18e-01 80 chrV:14689478-14689558 1.99e-06 22_[+1(1.38e-05)]_30_[+2(1.52e-05)]_\ 3_[+3(1.38e-05)]_1 chrIV:9774268-9774348 3.83e-01 80 chrIII:13225151-13225231 4.02e-02 22_[+4(5.91e-05)]_50 chrI:2821380-2821460 9.93e-01 80 chrX:2885524-2885604 6.02e-02 39_[+5(4.08e-05)]_33 chrIII:1052203-1052283 4.01e-01 80 chrIV:13893280-13893360 3.59e-01 80 chrX:17609900-17609980 2.03e-02 80 chrIII:10670129-10670209 1.34e-01 16_[+1(1.38e-05)]_[+1(1.38e-05)]_\ [+1(1.38e-05)]_[+1(1.38e-05)]_[+1(1.38e-05)]_24 chrX:15516003-15516083 4.96e-02 80 chrI:4948025-4948105 7.44e-01 80 chrII:15264695-15264775 9.60e-01 80 chrI:7715706-7715786 5.57e-02 59_[+5(5.51e-05)]_13 chrIV:4001686-4001766 5.34e-01 80 chrIII:3611616-3611696 9.59e-01 80 chrIII:13722533-13722613 8.05e-01 80 chrII:6844650-6844730 1.80e-01 80 chrV:10716950-10717030 2.14e-02 6_[+1(4.16e-05)]_66 chrV:6485324-6485404 9.27e-01 80 chrIII:3620838-3620918 7.80e-01 80 chrIII:2535171-2535251 9.34e-01 80 chrX:11033060-11033140 7.52e-01 80 chrM:2096-2176 8.70e-01 80 chrV:12331964-12332044 1.35e-01 12_[+4(5.91e-05)]_60 chrX:6737438-6737518 6.02e-02 80 chrI:11609203-11609283 6.07e-01 80 chrI:1575692-1575772 8.10e-01 80 chrI:11579766-11579846 1.02e-01 27_[+5(2.78e-05)]_45 chrX:3348023-3348103 3.38e-01 80 chrIV:3337414-3337494 9.94e-01 80 chrI:6581307-6581387 5.66e-01 80 chrIII:13032614-13032694 9.96e-01 80 chrII:4130408-4130488 1.14e-01 1_[+1(1.38e-05)]_[+1(1.38e-05)]_\ [+1(1.38e-05)]_[+1(1.38e-05)]_[+1(1.38e-05)]_[+1(1.38e-05)]_31 chrII:15226340-15226420 4.44e-01 80 chrX:5354625-5354705 8.46e-01 80 chrX:15668243-15668323 9.71e-01 80 chrV:14855808-14855888 3.25e-01 80 chrIII:4428930-4429010 1.84e-02 34_[+4(8.85e-05)]_38 chrX:12692151-12692231 9.34e-01 80 chrI:7543533-7543613 8.49e-01 80 chrV:19430583-19430663 4.43e-01 80 chrII:5293470-5293550 9.55e-01 80 chrIII:8650344-8650424 1.23e-01 48_[+4(1.51e-05)]_24 chrX:3994612-3994692 9.38e-01 80 chrV:4435611-4435691 8.88e-01 80 chrI:9176246-9176326 6.84e-01 80 chrIV:11928542-11928622 8.39e-01 80 chrIII:6805596-6805676 4.49e-01 80 chrII:8415781-8415861 2.10e-03 29_[+5(1.36e-05)]_43 chrIV:2802338-2802418 3.88e-01 80 chrX:2731625-2731705 8.93e-01 80 chrIII:13654997-13655077 9.16e-01 80 chrX:3914416-3914496 2.78e-02 80 chrII:7001610-7001690 9.87e-05 23_[+2(1.52e-05)]_2_[+3(1.38e-05)]_\ 39 chrV:19723026-19723106 9.64e-02 80 chrI:6136531-6136611 1.19e-02 72_[+2(1.52e-05)] chrV:16042804-16042884 9.24e-01 80 chrV:4666976-4667056 8.91e-01 80 chrIV:1514558-1514638 6.11e-01 80 chrIII:9104226-9104306 8.80e-01 80 chrI:9051279-9051359 8.72e-01 80 chrIII:4278141-4278221 6.43e-01 80 chrX:4789079-4789159 5.25e-05 59_[+2(1.52e-05)]_3_[+3(1.38e-05)]_\ 2 chrI:2728838-2728918 9.30e-01 80 chrX:8159266-8159346 8.54e-01 80 chrV:14828614-14828694 9.03e-01 80 chrI:6289718-6289798 7.82e-01 80 chrIV:4412091-4412171 9.39e-01 80 chrX:14229603-14229683 1.64e-01 1_[+1(1.38e-05)]_[+1(1.38e-05)]_\ [+1(1.38e-05)]_[+1(1.38e-05)]_[+1(1.38e-05)]_[+1(1.38e-05)]_[+1(1.38e-05)]_\ 23 chrIV:842735-842815 9.99e-01 80 chrIII:13651545-13651625 9.67e-01 80 chrM:4690-4770 9.35e-01 80 chrIII:3664377-3664457 4.53e-01 80 chrIV:3233028-3233108 9.80e-01 80 chrIII:7030574-7030654 6.22e-01 80 chrV:13176490-13176570 6.22e-01 80 chrI:11771129-11771209 7.51e-01 80 chrX:16928281-16928361 7.16e-02 1_[+4(1.51e-05)]_71 chrIII:1824692-1824772 1.79e-01 80 chrI:933434-933514 9.97e-01 80 chrIII:13721248-13721328 7.34e-01 80 chrIII:6133595-6133675 3.05e-03 [+1(1.38e-05)]_[+1(1.38e-05)]_\ [+1(1.38e-05)]_4_[+1(1.38e-05)]_2_[+1(5.47e-05)]_13_[+5(5.51e-05)]_13 chrX:9296767-9296847 9.33e-01 80 chrIV:1981099-1981179 8.95e-01 80 chrX:13653704-13653784 9.77e-04 30_[+2(1.52e-05)]_2_[+3(1.38e-05)]_\ 32 chrII:9308930-9309010 4.55e-03 4_[+5(4.08e-05)]_68 chrIV:11605037-11605117 8.17e-01 80 chrV:15013031-15013111 5.11e-03 14_[+4(5.91e-05)]_11_[+1(2.84e-05)]_\ 39 chrIII:5675487-5675567 4.64e-01 80 chrI:12065867-12065947 1.61e-01 80 chrIII:13713217-13713297 9.90e-01 80 chrV:12038636-12038716 1.48e-01 51_[+1(4.16e-05)]_21 chrM:9219-9299 9.91e-01 80 chrM:2971-3051 8.78e-01 80 chrX:11210517-11210597 3.16e-01 80 chrII:10989351-10989431 1.53e-01 80 chrIV:16398370-16398450 2.93e-04 20_[+2(1.52e-05)]_2_[+3(1.38e-05)]_\ 42 chrV:7231010-7231090 4.03e-01 80 chrI:13421123-13421203 5.92e-01 80 chrI:9374744-9374824 9.84e-01 80 chrII:10545339-10545419 1.40e-02 80 chrX:16342382-16342462 8.59e-02 80 chrX:13415084-13415164 2.12e-01 80 chrI:6724438-6724518 8.19e-01 80 chrX:8796824-8796904 8.65e-02 9_[+4(1.51e-05)]_63 chrI:12229268-12229348 1.40e-01 80 chrIV:13031121-13031201 9.24e-01 80 chrII:3567732-3567812 8.65e-02 43_[+4(5.91e-05)]_29 chrX:13145046-13145126 3.75e-01 80 chrX:12367678-12367758 3.09e-01 80 chrIII:1122427-1122507 7.28e-03 13_[+2(2.97e-05)]_59 chrI:1175810-1175890 8.11e-01 80 chrI:9268945-9269025 9.18e-01 80 chrX:5056377-5056457 9.21e-01 80 chrI:2831598-2831678 5.73e-04 35_[+1(1.38e-05)]_27_[+5(1.36e-05)]_\ 2 chrX:14115659-14115739 5.44e-01 80 chrIII:13713946-13714026 9.28e-03 80 chrII:4585585-4585665 3.49e-02 39_[+5(8.35e-05)]_33 chrM:956-1036 3.99e-01 80 chrIV:2639792-2639872 6.41e-03 28_[+4(1.51e-05)]_44 chrI:2299615-2299695 7.91e-01 80 chrX:12890232-12890312 3.50e-02 64_[+4(8.85e-05)]_8 chrV:2673980-2674060 2.59e-03 46_[+3(2.76e-05)]_26 chrX:2368721-2368801 8.55e-01 80 chrX:3678748-3678828 9.75e-02 80 chrIII:4426766-4426846 7.13e-01 80 chrV:6551827-6551907 2.54e-02 80 chrII:14248311-14248391 5.64e-01 80 chrII:14635404-14635484 4.22e-01 80 chrIII:10651740-10651820 5.65e-01 80 chrX:6286311-6286391 3.00e-04 16_[+2(1.52e-05)]_2_[+3(1.38e-05)]_\ 46 chrII:8128887-8128967 2.12e-02 80 chrIII:8653075-8653155 6.54e-01 80 chrIII:535387-535467 9.14e-06 1_[+2(1.52e-05)]_3_[+3(1.38e-05)]_\ 60 chrX:16551451-16551531 3.49e-02 66_[+2(1.52e-05)]_6 chrX:14804879-14804959 1.13e-02 4_[+2(1.52e-05)]_68 chrI:9605736-9605816 8.35e-02 80 chrIII:9704058-9704138 1.00e+00 80 chrV:4499302-4499382 1.25e-01 80 chrI:2935743-2935823 5.24e-01 80 chrV:15554000-15554080 3.62e-01 80 chrIII:7642156-7642236 2.17e-02 13_[+4(1.51e-05)]_59 chrX:8386166-8386246 7.34e-01 80 chrX:12629454-12629534 8.13e-01 80 chrII:6248660-6248740 3.97e-01 80 chrIV:16389262-16389342 3.31e-01 80 chrIV:3520965-3521045 6.36e-02 41_[+5(1.36e-05)]_31 chrIV:128557-128637 1.79e-01 80 chrX:15274255-15274335 4.44e-01 80 chrII:11959329-11959409 8.76e-01 80 chrX:3694308-3694388 9.96e-01 80 chrIII:3623799-3623879 1.31e-02 67_[+5(4.08e-05)]_5 chrI:4132274-4132354 4.88e-02 80 chrV:4648121-4648201 3.38e-01 80 chrX:16157095-16157175 9.05e-03 [+1(5.47e-05)]_72 chrII:5237801-5237881 6.06e-02 67_[+2(1.52e-05)]_5 chrIII:10624730-10624810 1.01e-01 23_[+4(1.51e-05)]_49 chrM:4908-4988 7.89e-01 80 chrX:8944244-8944324 4.12e-02 26_[+4(7.35e-05)]_46 chrX:9078319-9078399 2.62e-02 64_[+5(4.08e-05)]_8 chrV:3587828-3587908 9.93e-01 80 chrII:7708760-7708840 4.44e-01 80 chrIII:931612-931692 8.45e-01 80 chrIII:4947488-4947568 9.50e-01 80 chrX:6097694-6097774 1.94e-01 80 chrIV:1388237-1388317 2.28e-01 80 chrV:11239329-11239409 2.83e-02 2_[+5(4.08e-05)]_70 chrII:5399322-5399402 1.93e-01 80 chrX:8971627-8971707 4.02e-01 80 chrI:6153712-6153792 9.18e-01 80 chrII:4942520-4942600 9.66e-02 2_[+4(1.51e-05)]_70 chrX:5022812-5022892 7.81e-02 16_[+4(1.51e-05)]_56 chrIV:16399237-16399317 8.47e-01 80 chrIII:8106642-8106722 2.70e-02 17_[+2(2.97e-05)]_55 chrX:5319363-5319443 9.97e-03 [+5(8.35e-05)]_25_[+4(2.94e-05)]_39 chrI:13310339-13310419 4.26e-01 80 chrIII:10432241-10432321 7.30e-01 80 chrX:601546-601626 5.79e-01 80 chrX:5407341-5407421 2.68e-01 80 chrIII:12399900-12399980 3.79e-01 80 chrV:16699874-16699954 6.71e-01 80 chrIV:9316220-9316300 9.76e-01 80 chrII:1520018-1520098 3.91e-01 80 chrV:12510128-12510208 8.94e-01 80 chrIV:16400865-16400945 4.91e-01 80 chrV:14505970-14506050 4.27e-01 80 chrIV:9191330-9191410 8.50e-02 80 chrV:12780415-12780495 6.39e-01 80 chrIII:4414215-4414295 1.62e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************