******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/sea-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:3959854-3959934 1.0000 80 chrII:5820449-5820529 1.0000 80 chrI:1870810-1870890 1.0000 80 chrIV:14794438-14794518 1.0000 80 chrX:4458094-4458174 1.0000 80 chrIII:2780482-2780562 1.0000 80 chrX:5121953-5122033 1.0000 80 chrX:4145669-4145749 1.0000 80 chrI:10232656-10232736 1.0000 80 chrIV:7391675-7391755 1.0000 80 chrX:826121-826201 1.0000 80 chrX:15566791-15566871 1.0000 80 chrV:18079375-18079455 1.0000 80 chrV:10273905-10273985 1.0000 80 chrIV:10937016-10937096 1.0000 80 chrII:11751776-11751856 1.0000 80 chrX:15725113-15725193 1.0000 80 chrX:7682544-7682624 1.0000 80 chrIV:5953161-5953241 1.0000 80 chrII:7885014-7885094 1.0000 80 chrIII:4560629-4560709 1.0000 80 chrX:5896015-5896095 1.0000 80 chrIII:12369181-12369261 1.0000 80 chrV:1805141-1805221 1.0000 80 chrIV:8762639-8762719 1.0000 80 chrIII:10599875-10599955 1.0000 80 chrI:9374718-9374798 1.0000 80 chrI:2292947-2293027 1.0000 80 chrV:20829012-20829092 1.0000 80 chrIV:11765695-11765775 1.0000 80 chrI:3628740-3628820 1.0000 80 chrX:4260470-4260550 1.0000 80 chrIII:4018243-4018323 1.0000 80 chrIII:8905420-8905500 1.0000 80 chrX:15276882-15276962 1.0000 80 chrII:9062002-9062082 1.0000 80 chrIII:3248789-3248869 1.0000 80 chrII:1242594-1242674 1.0000 80 chrX:11367761-11367841 1.0000 80 chrX:14557543-14557623 1.0000 80 chrIV:14371766-14371846 1.0000 80 chrV:10174739-10174819 1.0000 80 chrI:14528836-14528916 1.0000 80 chrII:1236580-1236660 1.0000 80 chrIII:13258254-13258334 1.0000 80 chrII:1246987-1247067 1.0000 80 chrI:9380327-9380407 1.0000 80 chrV:9562002-9562082 1.0000 80 chrI:7125735-7125815 1.0000 80 chrII:3958852-3958932 1.0000 80 chrIII:12598598-12598678 1.0000 80 chrIII:9272252-9272332 1.0000 80 chrIV:4586139-4586219 1.0000 80 chrII:14405335-14405415 1.0000 80 chrII:3428381-3428461 1.0000 80 chrX:17151346-17151426 1.0000 80 chrX:10419862-10419942 1.0000 80 chrI:3806590-3806670 1.0000 80 chrV:5991545-5991625 1.0000 80 chrIII:5940605-5940685 1.0000 80 chrX:9337969-9338049 1.0000 80 chrIII:888041-888121 1.0000 80 chrIII:13780539-13780619 1.0000 80 chrII:7887460-7887540 1.0000 80 chrIV:11822011-11822091 1.0000 80 chrIV:13980248-13980328 1.0000 80 chrII:3374011-3374091 1.0000 80 chrIII:9443573-9443653 1.0000 80 chrIV:17329038-17329118 1.0000 80 chrX:14983430-14983510 1.0000 80 chrII:9311876-9311956 1.0000 80 chrIII:8021069-8021149 1.0000 80 chrX:14561718-14561798 1.0000 80 chrII:7838883-7838963 1.0000 80 chrIII:434519-434599 1.0000 80 chrX:8159128-8159208 1.0000 80 chrII:6197052-6197132 1.0000 80 chrII:9054755-9054835 1.0000 80 chrV:14200180-14200260 1.0000 80 chrI:7867134-7867214 1.0000 80 chrIV:5091218-5091298 1.0000 80 chrX:6378583-6378663 1.0000 80 chrIII:4666951-4667031 1.0000 80 chrIII:3542205-3542285 1.0000 80 chrI:4139285-4139365 1.0000 80 chrI:9381734-9381814 1.0000 80 chrI:6757221-6757301 1.0000 80 chrX:8566047-8566127 1.0000 80 chrI:1062035-1062115 1.0000 80 chrI:2577314-2577394 1.0000 80 chrIII:9817242-9817322 1.0000 80 chrX:9999832-9999912 1.0000 80 chrV:5592467-5592547 1.0000 80 chrIII:2101002-2101082 1.0000 80 chrX:7809796-7809876 1.0000 80 chrX:6097711-6097791 1.0000 80 chrX:5812157-5812237 1.0000 80 chrI:12665006-12665086 1.0000 80 chrI:5379932-5380012 1.0000 80 chrV:6879712-6879792 1.0000 80 chrIII:9546166-9546246 1.0000 80 chrX:8556782-8556862 1.0000 80 chrI:13475607-13475687 1.0000 80 chrI:10035102-10035182 1.0000 80 chrI:13547447-13547527 1.0000 80 chrI:397991-398071 1.0000 80 chrIII:11657322-11657402 1.0000 80 chrX:17513684-17513764 1.0000 80 chrI:10197215-10197295 1.0000 80 chrIV:10403224-10403304 1.0000 80 chrX:14841211-14841291 1.0000 80 chrII:11635159-11635239 1.0000 80 chrIII:11823466-11823546 1.0000 80 chrX:15607631-15607711 1.0000 80 chrII:15263246-15263326 1.0000 80 chrI:6756554-6756634 1.0000 80 chrX:8811079-8811159 1.0000 80 chrII:14248179-14248259 1.0000 80 chrII:5336123-5336203 1.0000 80 chrV:2694570-2694650 1.0000 80 chrIII:2532773-2532853 1.0000 80 chrIII:13061264-13061344 1.0000 80 chrX:14602910-14602990 1.0000 80 chrIII:3677516-3677596 1.0000 80 chrV:8001038-8001118 1.0000 80 chrIII:2597138-2597218 1.0000 80 chrX:14312666-14312746 1.0000 80 chrX:13687285-13687365 1.0000 80 chrV:6246709-6246789 1.0000 80 chrIII:8447109-8447189 1.0000 80 chrV:5049492-5049572 1.0000 80 chrIII:10284357-10284437 1.0000 80 chrIII:4193755-4193835 1.0000 80 chrI:7494391-7494471 1.0000 80 chrIII:8874283-8874363 1.0000 80 chrX:993230-993310 1.0000 80 chrI:9988921-9989001 1.0000 80 chrIV:16492585-16492665 1.0000 80 chrI:7082222-7082302 1.0000 80 chrII:11634320-11634400 1.0000 80 chrIV:11522697-11522777 1.0000 80 chrII:6827568-6827648 1.0000 80 chrIII:12608765-12608845 1.0000 80 chrX:6737769-6737849 1.0000 80 chrX:1454518-1454598 1.0000 80 chrV:20005906-20005986 1.0000 80 chrIII:10634246-10634326 1.0000 80 chrII:12102540-12102620 1.0000 80 chrV:9006-9086 1.0000 80 chrX:2237566-2237646 1.0000 80 chrX:2242971-2243051 1.0000 80 chrV:19529392-19529472 1.0000 80 chrI:6799635-6799715 1.0000 80 chrII:5017317-5017397 1.0000 80 chrIII:5024556-5024636 1.0000 80 chrIV:6646091-6646171 1.0000 80 chrII:11759402-11759482 1.0000 80 chrI:8409828-8409908 1.0000 80 chrII:6491834-6491914 1.0000 80 chrX:1446952-1447032 1.0000 80 chrX:14146832-14146912 1.0000 80 chrIII:4237887-4237967 1.0000 80 chrI:9113356-9113436 1.0000 80 chrI:1873899-1873979 1.0000 80 chrX:16961541-16961621 1.0000 80 chrX:14753715-14753795 1.0000 80 chrX:10568941-10569021 1.0000 80 chrII:6951638-6951718 1.0000 80 chrX:6742215-6742295 1.0000 80 chrIV:16491719-16491799 1.0000 80 chrIII:8795878-8795958 1.0000 80 chrI:7500443-7500523 1.0000 80 chrIII:8904278-8904358 1.0000 80 chrII:10548913-10548993 1.0000 80 chrX:8231951-8232031 1.0000 80 chrV:7728349-7728429 1.0000 80 chrIV:2599739-2599819 1.0000 80 chrV:9546958-9547038 1.0000 80 chrIV:8782364-8782444 1.0000 80 chrI:2929723-2929803 1.0000 80 chrII:9060425-9060505 1.0000 80 chrIII:9054007-9054087 1.0000 80 chrIV:2049053-2049133 1.0000 80 chrX:949577-949657 1.0000 80 chrI:9722248-9722328 1.0000 80 chrIV:2389125-2389205 1.0000 80 chrIII:4004304-4004384 1.0000 80 chrIV:14033678-14033758 1.0000 80 chrII:13335279-13335359 1.0000 80 chrI:12039888-12039968 1.0000 80 chrIII:4223763-4223843 1.0000 80 chrIII:1923661-1923741 1.0000 80 chrIII:8797273-8797353 1.0000 80 chrII:14250431-14250511 1.0000 80 chrIV:6790620-6790700 1.0000 80 chrII:11746963-11747043 1.0000 80 chrI:4699483-4699563 1.0000 80 chrX:9932474-9932554 1.0000 80 chrX:17184582-17184662 1.0000 80 chrIII:833839-833919 1.0000 80 chrV:1151484-1151564 1.0000 80 chrIII:13070656-13070736 1.0000 80 chrII:11453108-11453188 1.0000 80 chrII:10502826-10502906 1.0000 80 chrIII:13643692-13643772 1.0000 80 chrIV:16656407-16656487 1.0000 80 chrII:6589079-6589159 1.0000 80 chrI:3824417-3824497 1.0000 80 chrX:12106209-12106289 1.0000 80 chrV:15071430-15071510 1.0000 80 chrIII:4899927-4900007 1.0000 80 chrV:14696948-14697028 1.0000 80 chrX:14015875-14015955 1.0000 80 chrII:11749878-11749958 1.0000 80 chrX:13145399-13145479 1.0000 80 chrIII:8802106-8802186 1.0000 80 chrX:593455-593535 1.0000 80 chrII:11043114-11043194 1.0000 80 chrI:4701297-4701377 1.0000 80 chrV:6224692-6224772 1.0000 80 chrI:9382897-9382977 1.0000 80 chrIV:2219596-2219676 1.0000 80 chrII:12222642-12222722 1.0000 80 chrI:12815935-12816015 1.0000 80 chrIII:8800132-8800212 1.0000 80 chrX:14747129-14747209 1.0000 80 chrX:15841239-15841319 1.0000 80 chrIII:12905179-12905259 1.0000 80 chrX:5707960-5708040 1.0000 80 chrII:13834505-13834585 1.0000 80 chrX:16796878-16796958 1.0000 80 chrI:8786996-8787076 1.0000 80 chrIII:4649440-4649520 1.0000 80 chrI:7475324-7475404 1.0000 80 chrX:5801274-5801354 1.0000 80 chrX:16682063-16682143 1.0000 80 chrI:4254163-4254243 1.0000 80 chrI:4298195-4298275 1.0000 80 chrI:6781713-6781793 1.0000 80 chrX:16929715-16929795 1.0000 80 chrX:11605981-11606061 1.0000 80 chrX:3036068-3036148 1.0000 80 chrX:12393981-12394061 1.0000 80 chrIII:10759205-10759285 1.0000 80 chrII:10563516-10563596 1.0000 80 chrX:8836031-8836111 1.0000 80 chrX:11606181-11606261 1.0000 80 chrIII:4475622-4475702 1.0000 80 chrIV:6336946-6337026 1.0000 80 chrX:14560328-14560408 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_sea-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/sea-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.249 C 0.25 G 0.243 T 0.257 Background letter frequencies (from file dataset with add-one prior applied): A 0.249 C 0.25 G 0.243 T 0.257 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAGAGA MEME-1 width = 8 sites = 58 llr = 488 E-value = 2.0e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 191a:a:7 pos.-specific C 111::::1 probability G 8:8:a:a: matrix T :::::::2 bits 2.0 ** 1.8 **** 1.6 * **** 1.4 * **** Relative 1.2 ****** Entropy 1.0 ******* (12.1 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8800132-8800212 9 1.34e-05 gaggttga gagagaga gggagaCATT chrII:12222642-12222722 22 1.34e-05 gagcggcgaa gagagaga TCACGACAAT chrV:6224692-6224772 14 1.34e-05 ATTAGAAGAG GAGAGAGA ATAGAGAAAC chrI:4701297-4701377 60 1.34e-05 TATTACgaga gagagaga gagagggaga chrIV:6790620-6790700 22 1.34e-05 CACGAATGGT GAGAGAGA ATTGGCCTCC chrII:12102540-12102620 10 1.34e-05 aaccacaga gagagaga tgagagacgc chrV:20005906-20005986 36 1.34e-05 AGAGATATGG GAGAGAGA CCCAGACATT chrI:9988921-9989001 46 1.34e-05 ACAGGAAGGT GAGAGAGA CGCAGAAACG chrI:13547447-13547527 9 1.34e-05 TCCTTCTA GAGAGAGA GCAGCAGCCA chrI:13475607-13475687 26 1.34e-05 CAGAAGgaga gagagaga gagatacgag chrIII:2101002-2101082 13 1.34e-05 CCCagagaga gagagaga gagaccgaga chrIII:434519-434599 22 1.34e-05 gagagtgcgt gagagaga agatacgcag chrII:14405335-14405415 57 1.34e-05 GCGTAGAAAC GAGAGAGA CGCGGAAAGA chrIV:11765695-11765775 65 1.34e-05 GACATGTTGA GAGAGAGA AAGAAGGA chrIV:14794438-14794518 38 1.34e-05 GGGGGGGAGA GAGAGAGA GACACAACAC chrII:3959854-3959934 29 1.34e-05 AGGAAATGGA GAGAGAGA TGGAGAGAAT chrV:15071430-15071510 25 2.72e-05 cactctcATT GAGAGAGT CGGTCAGAGA chrX:12106209-12106289 69 2.72e-05 GTGGCAGCTG GAGAGAGT AAGT chrI:9722248-9722328 23 2.72e-05 CAGAGTAATT GAGAGAGT GAGAGACGTT chrIII:4237887-4237967 62 2.72e-05 GTAAGAGAGT GAGAGAGT GCAGAGAGTG chrI:5379932-5380012 10 2.72e-05 TCTCCCACT GAGAGAGT AAACTGCTTC chrIII:9443573-9443653 54 2.72e-05 GATTGCGCGT GAGAGAGT GCGAGACGGC chrIII:10599875-10599955 6 2.72e-05 GCAAC GAGAGAGT GAGGTCACGA chrIII:4560629-4560709 12 2.72e-05 AAATAAAGGC GAGAGAGT GTGTAAAATA chrX:4145669-4145749 3 2.72e-05 GC GAGAGAGT GTGGGAGGGT chrV:14696948-14697028 73 4.07e-05 AAAATGCAAT GAGAGAGC chrIV:2049053-2049133 55 4.07e-05 CCGAGACGCA GAGAGAGC GTATTGTTAG chrIV:11822011-11822091 56 4.07e-05 GCCGGCCGAT GAGAGAGC GCGTGCCGCC chrIII:9272252-9272332 24 4.07e-05 CAGAGCATTC GAGAGAGC CGCAGAGAAA chrI:12815935-12816015 21 5.45e-05 AATGTTGTGT CAGAGAGA TGTGGGGGGC chrIII:13643692-13643772 16 5.45e-05 GGCACAGTGC CAGAGAGA CGCAGTGCGG chrII:13335279-13335359 20 5.45e-05 cagagaaacg cagagaga cgcagaCAAC chrIII:8802106-8802186 73 6.82e-05 TGAGGATATG Aagagaga chrV:9562002-9562082 4 6.82e-05 AGG AAGAGAGA AGAGAAGCTG chrV:10273905-10273985 16 6.82e-05 TGCTTGCGGA AAGAGAGA AAACAGAGAC chrII:11749878-11749958 32 9.57e-05 AAAGCGGAGA GACAGAGA CGGACATGCT chrII:11759402-11759482 62 9.57e-05 CATTATAAGA GAAAGAGA CGGCCGACAG chrI:7867134-7867214 72 9.57e-05 ACACCACGAG GACAGAGA C chrII:7838883-7838963 51 9.57e-05 AAGAAATTCA GAAAGAGA CAGCAAGAAG chrIV:8762639-8762719 15 9.57e-05 CAAGATGGGG GACAGAGA GGGAGAGGGT chrIV:7391675-7391755 53 9.57e-05 GAATGATTGC GAAAGAGA AAGAGCGTCT chrIV:6336946-6337026 12 1.09e-04 GAAAGACAAT GCGAGAGA CAACATAAGA chrI:9382897-9382977 54 1.09e-04 AGCGAGTGGC GCGAGAGA CACAGAGACC chrII:10548913-10548993 22 1.09e-04 GGAGGTAAGG GCGAGAGA ACCGGAGGCG chrV:1151484-1151564 2 1.51e-04 G AAGAGAGT GTGCGGAGCG chrIII:13061264-13061344 1 1.51e-04 . CAGAGAGC GCATTAAGAG chrI:1062035-1062115 48 1.51e-04 TAGACTCGAA AAGAGAGT GCCCACCGCT chrI:9380327-9380407 62 1.51e-04 ACGAGACTAT CAGAGAGC ACAAAGGCTG chrIII:12369181-12369261 10 1.51e-04 GTGACGACA CAGAGAGC AAAGACTTGG chrI:10232656-10232736 41 2.07e-04 AAGAGACGTT GAGAGAGG TGGCACAGAG chrX:11606181-11606261 56 2.47e-04 TATTCAAATA GAAAGAGC GCTCACCATA chrII:14248179-14248259 72 2.47e-04 GAGGAAAAAG GGGAGAGA A chrI:8409828-8409908 7 2.89e-04 AGAGAG CACAGAGA AAAAAAGAGT chrX:993230-993310 18 2.89e-04 TGCGGCGGGT GAGGGAGA AGGCCCCCCT chrII:3958852-3958932 52 2.89e-04 AACCTATTTA CACAGAGA ATTGTCTTTT chrIII:8795878-8795958 53 3.16e-04 GGGTTCGCAT GAGAGACA TAGAGAAGCT chrII:9311876-9311956 2 3.16e-04 A GAGAGAAA TTTCAAGAAG chrII:5820449-5820529 37 3.58e-04 ACGAAAGCTT AAAAGAGA CGGAAAATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8800132-8800212 1.3e-05 8_[+1]_64 chrII:12222642-12222722 1.3e-05 21_[+1]_51 chrV:6224692-6224772 1.3e-05 13_[+1]_59 chrI:4701297-4701377 1.3e-05 59_[+1]_13 chrIV:6790620-6790700 1.3e-05 21_[+1]_51 chrII:12102540-12102620 1.3e-05 9_[+1]_63 chrV:20005906-20005986 1.3e-05 35_[+1]_37 chrI:9988921-9989001 1.3e-05 45_[+1]_27 chrI:13547447-13547527 1.3e-05 8_[+1]_64 chrI:13475607-13475687 1.3e-05 25_[+1]_47 chrIII:2101002-2101082 1.3e-05 12_[+1]_60 chrIII:434519-434599 1.3e-05 21_[+1]_51 chrII:14405335-14405415 1.3e-05 56_[+1]_16 chrIV:11765695-11765775 1.3e-05 64_[+1]_8 chrIV:14794438-14794518 1.3e-05 37_[+1]_35 chrII:3959854-3959934 1.3e-05 28_[+1]_44 chrV:15071430-15071510 2.7e-05 24_[+1]_48 chrX:12106209-12106289 2.7e-05 68_[+1]_4 chrI:9722248-9722328 2.7e-05 22_[+1]_50 chrIII:4237887-4237967 2.7e-05 61_[+1]_11 chrI:5379932-5380012 2.7e-05 9_[+1]_63 chrIII:9443573-9443653 2.7e-05 53_[+1]_19 chrIII:10599875-10599955 2.7e-05 5_[+1]_67 chrIII:4560629-4560709 2.7e-05 11_[+1]_61 chrX:4145669-4145749 2.7e-05 2_[+1]_70 chrV:14696948-14697028 4.1e-05 72_[+1] chrIV:2049053-2049133 4.1e-05 54_[+1]_18 chrIV:11822011-11822091 4.1e-05 55_[+1]_17 chrIII:9272252-9272332 4.1e-05 23_[+1]_49 chrI:12815935-12816015 5.4e-05 20_[+1]_52 chrIII:13643692-13643772 5.4e-05 15_[+1]_57 chrII:13335279-13335359 5.4e-05 19_[+1]_53 chrIII:8802106-8802186 6.8e-05 72_[+1] chrV:9562002-9562082 6.8e-05 3_[+1]_69 chrV:10273905-10273985 6.8e-05 15_[+1]_57 chrII:11749878-11749958 9.6e-05 31_[+1]_41 chrII:11759402-11759482 9.6e-05 61_[+1]_11 chrI:7867134-7867214 9.6e-05 71_[+1]_1 chrII:7838883-7838963 9.6e-05 50_[+1]_22 chrIV:8762639-8762719 9.6e-05 14_[+1]_58 chrIV:7391675-7391755 9.6e-05 52_[+1]_20 chrIV:6336946-6337026 0.00011 11_[+1]_61 chrI:9382897-9382977 0.00011 53_[+1]_19 chrII:10548913-10548993 0.00011 21_[+1]_51 chrV:1151484-1151564 0.00015 1_[+1]_71 chrIII:13061264-13061344 0.00015 [+1]_72 chrI:1062035-1062115 0.00015 47_[+1]_25 chrI:9380327-9380407 0.00015 61_[+1]_11 chrIII:12369181-12369261 0.00015 9_[+1]_63 chrI:10232656-10232736 0.00021 40_[+1]_32 chrX:11606181-11606261 0.00025 55_[+1]_17 chrII:14248179-14248259 0.00025 71_[+1]_1 chrI:8409828-8409908 0.00029 6_[+1]_66 chrX:993230-993310 0.00029 17_[+1]_55 chrII:3958852-3958932 0.00029 51_[+1]_21 chrIII:8795878-8795958 0.00032 52_[+1]_20 chrII:9311876-9311956 0.00032 1_[+1]_71 chrII:5820449-5820529 0.00036 36_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGAGA width=8 seqs=58 chrIII:8800132-8800212 ( 9) GAGAGAGA 1 chrII:12222642-12222722 ( 22) GAGAGAGA 1 chrV:6224692-6224772 ( 14) GAGAGAGA 1 chrI:4701297-4701377 ( 60) GAGAGAGA 1 chrIV:6790620-6790700 ( 22) GAGAGAGA 1 chrII:12102540-12102620 ( 10) GAGAGAGA 1 chrV:20005906-20005986 ( 36) GAGAGAGA 1 chrI:9988921-9989001 ( 46) GAGAGAGA 1 chrI:13547447-13547527 ( 9) GAGAGAGA 1 chrI:13475607-13475687 ( 26) GAGAGAGA 1 chrIII:2101002-2101082 ( 13) GAGAGAGA 1 chrIII:434519-434599 ( 22) GAGAGAGA 1 chrII:14405335-14405415 ( 57) GAGAGAGA 1 chrIV:11765695-11765775 ( 65) GAGAGAGA 1 chrIV:14794438-14794518 ( 38) GAGAGAGA 1 chrII:3959854-3959934 ( 29) GAGAGAGA 1 chrV:15071430-15071510 ( 25) GAGAGAGT 1 chrX:12106209-12106289 ( 69) GAGAGAGT 1 chrI:9722248-9722328 ( 23) GAGAGAGT 1 chrIII:4237887-4237967 ( 62) GAGAGAGT 1 chrI:5379932-5380012 ( 10) GAGAGAGT 1 chrIII:9443573-9443653 ( 54) GAGAGAGT 1 chrIII:10599875-10599955 ( 6) GAGAGAGT 1 chrIII:4560629-4560709 ( 12) GAGAGAGT 1 chrX:4145669-4145749 ( 3) GAGAGAGT 1 chrV:14696948-14697028 ( 73) GAGAGAGC 1 chrIV:2049053-2049133 ( 55) GAGAGAGC 1 chrIV:11822011-11822091 ( 56) GAGAGAGC 1 chrIII:9272252-9272332 ( 24) GAGAGAGC 1 chrI:12815935-12816015 ( 21) CAGAGAGA 1 chrIII:13643692-13643772 ( 16) CAGAGAGA 1 chrII:13335279-13335359 ( 20) CAGAGAGA 1 chrIII:8802106-8802186 ( 73) AAGAGAGA 1 chrV:9562002-9562082 ( 4) AAGAGAGA 1 chrV:10273905-10273985 ( 16) AAGAGAGA 1 chrII:11749878-11749958 ( 32) GACAGAGA 1 chrII:11759402-11759482 ( 62) GAAAGAGA 1 chrI:7867134-7867214 ( 72) GACAGAGA 1 chrII:7838883-7838963 ( 51) GAAAGAGA 1 chrIV:8762639-8762719 ( 15) GACAGAGA 1 chrIV:7391675-7391755 ( 53) GAAAGAGA 1 chrIV:6336946-6337026 ( 12) GCGAGAGA 1 chrI:9382897-9382977 ( 54) GCGAGAGA 1 chrII:10548913-10548993 ( 22) GCGAGAGA 1 chrV:1151484-1151564 ( 2) AAGAGAGT 1 chrIII:13061264-13061344 ( 1) CAGAGAGC 1 chrI:1062035-1062115 ( 48) AAGAGAGT 1 chrI:9380327-9380407 ( 62) CAGAGAGC 1 chrIII:12369181-12369261 ( 10) CAGAGAGC 1 chrI:10232656-10232736 ( 41) GAGAGAGG 1 chrX:11606181-11606261 ( 56) GAAAGAGC 1 chrII:14248179-14248259 ( 72) GGGAGAGA 1 chrI:8409828-8409908 ( 7) CACAGAGA 1 chrX:993230-993310 ( 18) GAGGGAGA 1 chrII:3958852-3958932 ( 52) CACAGAGA 1 chrIII:8795878-8795958 ( 53) GAGAGACA 1 chrII:9311876-9311956 ( 2) GAGAGAAA 1 chrII:5820449-5820529 ( 37) AAAAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 2.0e-028 -127 -86 164 -1250 190 -227 -382 -1250 -153 -154 177 -1250 198 -1250 -382 -1250 -1250 -1250 204 -1250 200 -1250 -1250 -1250 -385 -386 199 -1250 139 -86 -382 -44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 2.0e-028 0.103448 0.137931 0.758621 0.000000 0.931034 0.051724 0.017241 0.000000 0.086207 0.086207 0.827586 0.000000 0.982759 0.000000 0.017241 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.017241 0.017241 0.965517 0.000000 0.655172 0.137931 0.017241 0.189655 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-1 regular expression -------------------------------------------------------------------------------- GAGAGAGA -------------------------------------------------------------------------------- Time 9.32 secs. ******************************************************************************** ******************************************************************************** MOTIF AATCGATW MEME-2 width = 8 sites = 39 llr = 351 E-value = 2.4e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATCGATW MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8a::3a:5 pos.-specific C :::a:::: probability G ::::7::2 matrix T 2:a:::a3 bits 2.0 *** ** 1.8 *** ** 1.6 *** ** 1.4 **** ** Relative 1.2 ******* Entropy 1.0 ******* (13.0 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATCGATA consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGATW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:2597138-2597218 18 1.54e-05 AAGAATGAAA AATCGATA AGTTGCCGTG chrI:1062035-1062115 32 1.54e-05 AGCACCTCCT AATCGATA GACTCGAAAA chrIII:888041-888121 42 1.54e-05 TCGTCCCGAA AATCGATA AAACAGAGCG chrIII:9272252-9272332 40 1.54e-05 GCCGCAGAGA AATCGATA TGACGCTGTG chrV:9562002-9562082 25 1.54e-05 GAAGCTGAGA AATCGATA GCCTACGGCG chrIV:10937016-10937096 23 1.54e-05 TACGTCTCAA AATCGATA TGTTACTGCG chrV:10273905-10273985 56 1.54e-05 TATGAGAGCC AATCGATA CGTGGGTGCG chrX:826121-826201 29 1.54e-05 CGCTGCAAAG AATCGATA AGTTGAGCGT chrI:10232656-10232736 70 1.54e-05 CCAAATTGAA AATCGATA TAG chrIV:14794438-14794518 69 1.54e-05 AGAAGAACAA AATCGATA AAAT chrI:4699483-4699563 67 3.13e-05 CAACTCTTCT AATCGATT CTAGCA chrIII:5024556-5024636 30 3.13e-05 ACCCGCGCAA AATCGATT GACACGCCTC chrIV:16492585-16492665 27 3.13e-05 AAAACAAAAT AATCGATT GCCTGCCGCG chrIII:9443573-9443653 40 3.13e-05 GCCGCTTGCC AATCGATT GCGCGTGAGA chrX:4145669-4145749 58 3.13e-05 TTGCAACAAA AATCGATT CTCGGAGTGC chrII:11453108-11453188 19 4.71e-05 TTAAGTCGAT AATCAATA AAATGGGAGC chrI:12039888-12039968 63 4.71e-05 TTTCTCCATT AATCAATA ATGGCCGAGA chrX:8231951-8232031 54 4.71e-05 CGGCTGGAGA AATCAATA TTTGACCCTC chrIII:3677516-3677596 47 4.71e-05 CACGAGAGCC AATCAATA ACTAGTCTCC chrX:14602910-14602990 38 4.71e-05 GCGGACGAAA AATCAATA GGATGGCGGT chrX:9999832-9999912 44 4.71e-05 tttcCGCCAC AATCAATA AAATGACAGC chrII:3374011-3374091 43 4.71e-05 ATAAATCGAA AATCAATA AAAAAGAAGA chrII:7885014-7885094 25 4.71e-05 AAAGACACCA AATCAATA AGTAGCCGTG chrIV:5953161-5953241 24 4.71e-05 TCTTTCTAGA AATCAATA GGAAGAAGGC chrI:1870810-1870890 45 4.71e-05 TCTTTCGATT AATCAATA CGTTGCAGTG chrI:10035102-10035182 44 6.22e-05 GAAGCCTACA AATCGATG ATGGTGTAtg chrIV:11822011-11822091 29 6.22e-05 AAAGAAGAAA AATCGATG GACAGCAGTG chrI:3806590-3806670 46 6.22e-05 AACCAGCGAA AATCGATG GAGACAAGTA chrV:20829012-20829092 41 6.22e-05 CTTCGAGGAA AATCGATG AGCTGAAGGC chrV:18079375-18079455 50 6.22e-05 CAACATCGAA AATCGATG GGATTTGTTG chrII:5820449-5820529 50 6.22e-05 AGAGACGGAA AATCGATG TACTAGAGTG chrX:4458094-4458174 59 7.85e-05 CTCATCGATT AATCAATT CTTGTGGTTT chrX:9337969-9338049 7 1.10e-04 GCTGCG AATCAATG CGCGTAAGGA chrX:10568941-10569021 23 1.26e-04 CGTTCTTGCC TATCGATT GCCGCATCTC chrX:2237566-2237646 16 1.26e-04 CACCTTTGCC TATCGATT TTGACAGAGG chrI:2292947-2293027 15 1.26e-04 CACACTTCTC TATCGATT TCTATTTGGG chrIII:12369181-12369261 66 1.26e-04 CCTTTTGTCG TATCGATT TTGTGGG chrX:5896015-5896095 14 1.26e-04 AGCTCTCAGT TATCGATT GAGCCTATGT chrIII:2780482-2780562 32 1.26e-04 CGCACCACCC TATCGATT TTCGTTCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGATW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:2597138-2597218 1.5e-05 17_[+2]_55 chrI:1062035-1062115 1.5e-05 31_[+2]_41 chrIII:888041-888121 1.5e-05 41_[+2]_31 chrIII:9272252-9272332 1.5e-05 39_[+2]_33 chrV:9562002-9562082 1.5e-05 24_[+2]_48 chrIV:10937016-10937096 1.5e-05 22_[+2]_50 chrV:10273905-10273985 1.5e-05 55_[+2]_17 chrX:826121-826201 1.5e-05 28_[+2]_44 chrI:10232656-10232736 1.5e-05 69_[+2]_3 chrIV:14794438-14794518 1.5e-05 68_[+2]_4 chrI:4699483-4699563 3.1e-05 66_[+2]_6 chrIII:5024556-5024636 3.1e-05 29_[+2]_43 chrIV:16492585-16492665 3.1e-05 26_[+2]_46 chrIII:9443573-9443653 3.1e-05 39_[+2]_33 chrX:4145669-4145749 3.1e-05 57_[+2]_15 chrII:11453108-11453188 4.7e-05 18_[+2]_54 chrI:12039888-12039968 4.7e-05 62_[+2]_10 chrX:8231951-8232031 4.7e-05 53_[+2]_19 chrIII:3677516-3677596 4.7e-05 46_[+2]_26 chrX:14602910-14602990 4.7e-05 37_[+2]_35 chrX:9999832-9999912 4.7e-05 43_[+2]_29 chrII:3374011-3374091 4.7e-05 42_[+2]_30 chrII:7885014-7885094 4.7e-05 24_[+2]_48 chrIV:5953161-5953241 4.7e-05 23_[+2]_49 chrI:1870810-1870890 4.7e-05 44_[+2]_28 chrI:10035102-10035182 6.2e-05 43_[+2]_29 chrIV:11822011-11822091 6.2e-05 28_[+2]_44 chrI:3806590-3806670 6.2e-05 45_[+2]_27 chrV:20829012-20829092 6.2e-05 40_[+2]_32 chrV:18079375-18079455 6.2e-05 49_[+2]_23 chrII:5820449-5820529 6.2e-05 49_[+2]_23 chrX:4458094-4458174 7.9e-05 58_[+2]_14 chrX:9337969-9338049 0.00011 6_[+2]_66 chrX:10568941-10569021 0.00013 22_[+2]_50 chrX:2237566-2237646 0.00013 15_[+2]_57 chrI:2292947-2293027 0.00013 14_[+2]_58 chrIII:12369181-12369261 0.00013 65_[+2]_7 chrX:5896015-5896095 0.00013 13_[+2]_59 chrIII:2780482-2780562 0.00013 31_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGATW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATCGATW width=8 seqs=39 chrIII:2597138-2597218 ( 18) AATCGATA 1 chrI:1062035-1062115 ( 32) AATCGATA 1 chrIII:888041-888121 ( 42) AATCGATA 1 chrIII:9272252-9272332 ( 40) AATCGATA 1 chrV:9562002-9562082 ( 25) AATCGATA 1 chrIV:10937016-10937096 ( 23) AATCGATA 1 chrV:10273905-10273985 ( 56) AATCGATA 1 chrX:826121-826201 ( 29) AATCGATA 1 chrI:10232656-10232736 ( 70) AATCGATA 1 chrIV:14794438-14794518 ( 69) AATCGATA 1 chrI:4699483-4699563 ( 67) AATCGATT 1 chrIII:5024556-5024636 ( 30) AATCGATT 1 chrIV:16492585-16492665 ( 27) AATCGATT 1 chrIII:9443573-9443653 ( 40) AATCGATT 1 chrX:4145669-4145749 ( 58) AATCGATT 1 chrII:11453108-11453188 ( 19) AATCAATA 1 chrI:12039888-12039968 ( 63) AATCAATA 1 chrX:8231951-8232031 ( 54) AATCAATA 1 chrIII:3677516-3677596 ( 47) AATCAATA 1 chrX:14602910-14602990 ( 38) AATCAATA 1 chrX:9999832-9999912 ( 44) AATCAATA 1 chrII:3374011-3374091 ( 43) AATCAATA 1 chrII:7885014-7885094 ( 25) AATCAATA 1 chrIV:5953161-5953241 ( 24) AATCAATA 1 chrI:1870810-1870890 ( 45) AATCAATA 1 chrI:10035102-10035182 ( 44) AATCGATG 1 chrIV:11822011-11822091 ( 29) AATCGATG 1 chrI:3806590-3806670 ( 46) AATCGATG 1 chrV:20829012-20829092 ( 41) AATCGATG 1 chrV:18079375-18079455 ( 50) AATCGATG 1 chrII:5820449-5820529 ( 50) AATCGATG 1 chrX:4458094-4458174 ( 59) AATCAATT 1 chrX:9337969-9338049 ( 7) AATCAATG 1 chrX:10568941-10569021 ( 23) TATCGATT 1 chrX:2237566-2237646 ( 16) TATCGATT 1 chrI:2292947-2293027 ( 15) TATCGATT 1 chrIII:12369181-12369261 ( 66) TATCGATT 1 chrX:5896015-5896095 ( 14) TATCGATT 1 chrIII:2780482-2780562 ( 32) TATCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGATW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09119 E= 2.4e-017 176 -1193 -1193 -74 200 -1193 -1193 -1193 -1193 -1193 -1193 196 -1193 200 -1193 -1193 30 -1193 151 -1193 200 -1193 -1193 -1193 -1193 -1193 -1193 196 104 -1193 -44 26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGATW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 2.4e-017 0.846154 0.000000 0.000000 0.153846 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.307692 0.000000 0.692308 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.512821 0.000000 0.179487 0.307692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGATW MEME-2 regular expression -------------------------------------------------------------------------------- AATC[GA]AT[AT] -------------------------------------------------------------------------------- Time 13.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAMRCR MEME-3 width = 8 sites = 55 llr = 429 E-value = 9.4e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAMRCR MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:a6525 pos.-specific C ::::3:6: probability G a:a:1515 matrix T ::::::1: bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 **** Entropy 1.0 **** * * (11.2 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAACA consensus CGAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAMRCR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6336946-6337026 46 5.52e-05 TACGCAGACG GAGAAACA ATGTGGGTAG chrV:6224692-6224772 25 5.52e-05 AGAGAGAATA GAGAAACG GCCCGATAAA chrII:11453108-11453188 65 5.52e-05 GTTATAAAAC GAGAAACG CGCAATGG chrII:13335279-13335359 2 5.52e-05 a gagaaaca cagagaaacg chrIII:8795878-8795958 28 5.52e-05 TAGAGAAATA GAGAAACG CGAAGAGGGG chrX:6737769-6737849 46 5.52e-05 GTGAGAAAAT GAGAAACG ACGTCACACA chrIII:8447109-8447189 33 5.52e-05 CCGAATATTC GAGAAACG TCTAGTACAT chrX:14312666-14312746 24 5.52e-05 TTAAAAGGAG GAGAAGCA AGTACGCAAG chrIII:13061264-13061344 43 5.52e-05 GAGATACGCA GAGAAGCA TACAAAAACA chrIV:5091218-5091298 70 5.52e-05 GAAGTTTATT GAGAAACA ATT chrI:9380327-9380407 39 5.52e-05 CGGCAGGGAG GAGAAGCA GAGCGACGAG chrII:1236580-1236660 68 5.52e-05 CAGCGTGCGG GAGAAACG AGAGA chrII:11751776-11751856 35 5.52e-05 GAGTCCATGG GAGAAGCG ACATATTGGG chrII:3959854-3959934 49 5.52e-05 GAGAGAATTA GAGAAACG GTGGGATAAT chrIII:4223763-4223843 36 1.11e-04 GGAGTATCAA GAGACGCA GACATTTAGA chrIV:2049053-2049133 47 1.11e-04 AGAGATCACC GAGACGCA GAGAGAGCGT chrII:10548913-10548993 40 1.11e-04 ACCGGAGGCG GAGACACG ATACCACGAG chrX:16961541-16961621 71 1.11e-04 CCAGGCGCAA GAGACGCA GA chrX:2237566-2237646 45 1.11e-04 ACGGCTAGTA GAGACGCA GATAGAAAAG chrII:12102540-12102620 21 1.11e-04 agagagatga gagacgca gatgagaAAA chrV:20005906-20005986 18 1.11e-04 AGTCAACACT GAGACACG AGAGATATGG chrX:1454518-1454598 51 1.11e-04 gaggggacag gagacgca gagCTTGCGA chrIII:2101002-2101082 29 1.11e-04 gagagaccga gagacaca gacgatgaga chrII:14405335-14405415 35 1.11e-04 GGTAAATCGA GAGACGCA GACGGCGTAG chrIII:12598598-12598678 17 1.11e-04 AAAGAGGGGG GAGACGCG TCGCGGTCGT chrIII:2780482-2780562 2 1.11e-04 G GAGACGCA GAGAACGCGT chrX:4458094-4458174 18 1.11e-04 TGTCACTGCT GAGACGCA GAAACTACAT chrI:4254163-4254243 46 1.66e-04 AGTGCTCTTC GAGAAAAG AACGAGGAGA chrII:11043114-11043194 16 1.66e-04 TACACACgaa gagaagaa gaagaagaag chrIII:4004304-4004384 16 1.66e-04 AAAAATACGC GAGAAAAA TAAAATTATT chrI:7082222-7082302 60 1.66e-04 AACCACCAGT GAGAAGAA AAAAGGGGCA chrX:14561718-14561798 62 1.66e-04 TTCTCGGGGG GAGAAAAG AGGCAAAAAG chrII:9311876-9311956 65 1.66e-04 GTTGGAAGCA GAGAAGAG GATTAGGC chrII:3428381-3428461 68 1.66e-04 ACATTGAGGG GAGAAGAA GATGT chrV:9562002-9562082 42 1.66e-04 AGCCTACGGC GAGAAAAA ATAGAATTGA chrIV:11765695-11765775 3 1.66e-04 CT GAGAAGAA GCTGAATTCA chrX:12393981-12394061 43 2.22e-04 GTCAATACAC GAGAAATG CGCCAGCAAT chrX:14747129-14747209 60 2.22e-04 AACTACTCTC GAGAAATG CGCCAGCTGC chrIII:8904278-8904358 70 2.22e-04 ACACAGCTGA GAGAAGTG AAT chrX:14146832-14146912 45 2.22e-04 TTGACGGGGG GAGAAATA GTGTCTGAAG chrIII:9817242-9817322 24 2.22e-04 AGAATACAAT GAGAAGTG AATAGAAAAT chrII:7838883-7838963 32 2.22e-04 AACAGAAAGT GAGAAATG GAAGAAATTC chrIII:8802106-8802186 23 2.77e-04 TTGCGCAATC GAGACGAA GAAACCTTGG chrI:3806590-3806670 54 2.77e-04 AAAATCGATG GAGACAAG TAGAGGAGTG chrV:15071430-15071510 39 3.31e-04 GAGTCGGTCA GAGAAAGA CAACCGGAGG chrX:949577-949657 36 3.31e-04 ACAAGGGATA GAGAAGGG AGGAAGAGGG chrI:7500443-7500523 26 3.31e-04 AATAGGTGGG GAGAAAGG GGGAGAGCAC chrIII:434519-434599 39 3.31e-04 aagatacgca gagaaaga ggggaaagat chrIII:13070656-13070736 20 3.85e-04 CGTCAAAAAC GAGAGGCG GCGCTGCATT chrI:9722248-9722328 31 3.85e-04 TTGAGAGAGT GAGAGACG TTAGACTGCT chrIII:3677516-3677596 73 3.85e-04 CCCCagagat gagagacg chrI:13475607-13475687 41 3.85e-04 agagagatac gagagaCA TAAGTCTATT chrIII:10599875-10599955 22 3.85e-04 GTGAGGTCAC GAGAGGCA GAGTCCGCAA chrI:9988921-9989001 29 4.42e-04 TCTAGTAGGC GAGACATA CAGGAAGGTG chrII:11635159-11635239 36 4.96e-04 AGAGACTCGC GAGACGGG TCGGCGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAMRCR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6336946-6337026 5.5e-05 45_[+3]_27 chrV:6224692-6224772 5.5e-05 24_[+3]_48 chrII:11453108-11453188 5.5e-05 64_[+3]_8 chrII:13335279-13335359 5.5e-05 1_[+3]_71 chrIII:8795878-8795958 5.5e-05 27_[+3]_45 chrX:6737769-6737849 5.5e-05 45_[+3]_27 chrIII:8447109-8447189 5.5e-05 32_[+3]_40 chrX:14312666-14312746 5.5e-05 23_[+3]_49 chrIII:13061264-13061344 5.5e-05 42_[+3]_30 chrIV:5091218-5091298 5.5e-05 69_[+3]_3 chrI:9380327-9380407 5.5e-05 38_[+3]_34 chrII:1236580-1236660 5.5e-05 67_[+3]_5 chrII:11751776-11751856 5.5e-05 34_[+3]_38 chrII:3959854-3959934 5.5e-05 48_[+3]_24 chrIII:4223763-4223843 0.00011 35_[+3]_37 chrIV:2049053-2049133 0.00011 46_[+3]_26 chrII:10548913-10548993 0.00011 39_[+3]_33 chrX:16961541-16961621 0.00011 70_[+3]_2 chrX:2237566-2237646 0.00011 44_[+3]_28 chrII:12102540-12102620 0.00011 20_[+3]_52 chrV:20005906-20005986 0.00011 17_[+3]_55 chrX:1454518-1454598 0.00011 50_[+3]_22 chrIII:2101002-2101082 0.00011 28_[+3]_44 chrII:14405335-14405415 0.00011 34_[+3]_38 chrIII:12598598-12598678 0.00011 16_[+3]_56 chrIII:2780482-2780562 0.00011 1_[+3]_71 chrX:4458094-4458174 0.00011 17_[+3]_55 chrI:4254163-4254243 0.00017 45_[+3]_27 chrII:11043114-11043194 0.00017 15_[+3]_57 chrIII:4004304-4004384 0.00017 15_[+3]_57 chrI:7082222-7082302 0.00017 59_[+3]_13 chrX:14561718-14561798 0.00017 61_[+3]_11 chrII:9311876-9311956 0.00017 64_[+3]_8 chrII:3428381-3428461 0.00017 67_[+3]_5 chrV:9562002-9562082 0.00017 41_[+3]_31 chrIV:11765695-11765775 0.00017 2_[+3]_70 chrX:12393981-12394061 0.00022 42_[+3]_30 chrX:14747129-14747209 0.00022 59_[+3]_13 chrIII:8904278-8904358 0.00022 69_[+3]_3 chrX:14146832-14146912 0.00022 44_[+3]_28 chrIII:9817242-9817322 0.00022 23_[+3]_49 chrII:7838883-7838963 0.00022 31_[+3]_41 chrIII:8802106-8802186 0.00028 22_[+3]_50 chrI:3806590-3806670 0.00028 53_[+3]_19 chrV:15071430-15071510 0.00033 38_[+3]_34 chrX:949577-949657 0.00033 35_[+3]_37 chrI:7500443-7500523 0.00033 25_[+3]_47 chrIII:434519-434599 0.00033 38_[+3]_34 chrIII:13070656-13070736 0.00038 19_[+3]_53 chrI:9722248-9722328 0.00038 30_[+3]_42 chrIII:3677516-3677596 0.00038 72_[+3] chrI:13475607-13475687 0.00038 40_[+3]_32 chrIII:10599875-10599955 0.00038 21_[+3]_51 chrI:9988921-9989001 0.00044 28_[+3]_44 chrII:11635159-11635239 0.0005 35_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAMRCR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAMRCR width=8 seqs=55 chrIV:6336946-6337026 ( 46) GAGAAACA 1 chrV:6224692-6224772 ( 25) GAGAAACG 1 chrII:11453108-11453188 ( 65) GAGAAACG 1 chrII:13335279-13335359 ( 2) GAGAAACA 1 chrIII:8795878-8795958 ( 28) GAGAAACG 1 chrX:6737769-6737849 ( 46) GAGAAACG 1 chrIII:8447109-8447189 ( 33) GAGAAACG 1 chrX:14312666-14312746 ( 24) GAGAAGCA 1 chrIII:13061264-13061344 ( 43) GAGAAGCA 1 chrIV:5091218-5091298 ( 70) GAGAAACA 1 chrI:9380327-9380407 ( 39) GAGAAGCA 1 chrII:1236580-1236660 ( 68) GAGAAACG 1 chrII:11751776-11751856 ( 35) GAGAAGCG 1 chrII:3959854-3959934 ( 49) GAGAAACG 1 chrIII:4223763-4223843 ( 36) GAGACGCA 1 chrIV:2049053-2049133 ( 47) GAGACGCA 1 chrII:10548913-10548993 ( 40) GAGACACG 1 chrX:16961541-16961621 ( 71) GAGACGCA 1 chrX:2237566-2237646 ( 45) GAGACGCA 1 chrII:12102540-12102620 ( 21) GAGACGCA 1 chrV:20005906-20005986 ( 18) GAGACACG 1 chrX:1454518-1454598 ( 51) GAGACGCA 1 chrIII:2101002-2101082 ( 29) GAGACACA 1 chrII:14405335-14405415 ( 35) GAGACGCA 1 chrIII:12598598-12598678 ( 17) GAGACGCG 1 chrIII:2780482-2780562 ( 2) GAGACGCA 1 chrX:4458094-4458174 ( 18) GAGACGCA 1 chrI:4254163-4254243 ( 46) GAGAAAAG 1 chrII:11043114-11043194 ( 16) GAGAAGAA 1 chrIII:4004304-4004384 ( 16) GAGAAAAA 1 chrI:7082222-7082302 ( 60) GAGAAGAA 1 chrX:14561718-14561798 ( 62) GAGAAAAG 1 chrII:9311876-9311956 ( 65) GAGAAGAG 1 chrII:3428381-3428461 ( 68) GAGAAGAA 1 chrV:9562002-9562082 ( 42) GAGAAAAA 1 chrIV:11765695-11765775 ( 3) GAGAAGAA 1 chrX:12393981-12394061 ( 43) GAGAAATG 1 chrX:14747129-14747209 ( 60) GAGAAATG 1 chrIII:8904278-8904358 ( 70) GAGAAGTG 1 chrX:14146832-14146912 ( 45) GAGAAATA 1 chrIII:9817242-9817322 ( 24) GAGAAGTG 1 chrII:7838883-7838963 ( 32) GAGAAATG 1 chrIII:8802106-8802186 ( 23) GAGACGAA 1 chrI:3806590-3806670 ( 54) GAGACAAG 1 chrV:15071430-15071510 ( 39) GAGAAAGA 1 chrX:949577-949657 ( 36) GAGAAGGG 1 chrI:7500443-7500523 ( 26) GAGAAAGG 1 chrIII:434519-434599 ( 39) GAGAAAGA 1 chrIII:13070656-13070736 ( 20) GAGAGGCG 1 chrI:9722248-9722328 ( 31) GAGAGACG 1 chrIII:3677516-3677596 ( 73) GAGAGACG 1 chrI:13475607-13475687 ( 41) GAGAGACA 1 chrIII:10599875-10599955 ( 22) GAGAGGCA 1 chrI:9988921-9989001 ( 29) GAGACATA 1 chrII:11635159-11635239 ( 36) GAGACGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAMRCR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 9.4e-010 -1243 -1243 204 -1243 200 -1243 -1243 -1243 -1243 -1243 204 -1243 200 -1243 -1243 -1243 127 30 -142 -1243 108 -1243 96 -1243 -32 122 -142 -101 108 -1243 96 -1243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAMRCR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 9.4e-010 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.309091 0.090909 0.000000 0.527273 0.000000 0.472727 0.000000 0.200000 0.581818 0.090909 0.127273 0.527273 0.000000 0.472727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAMRCR MEME-3 regular expression -------------------------------------------------------------------------------- GAGA[AC][AG][CA][AG] -------------------------------------------------------------------------------- Time 17.43 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCTCTCT MEME-4 width = 8 sites = 99 llr = 677 E-value = 2.0e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCTCTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :11::::: pos.-specific C 5:7:8:8: probability G 13::1::1 matrix T 463a1a29 bits 2.0 1.8 * * 1.6 * * 1.4 * *** Relative 1.2 ***** Entropy 1.0 ***** (9.9 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus TGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:15071430-15071510 3 1.70e-05 ct ctctctct cattcactct chrII:11746963-11747043 11 1.70e-05 Atctctctct ctctctct cGTGCTCTTG chrV:7728349-7728429 35 1.70e-05 CCTCCGCATA CTCTCTCT AGTCGACTTG chrV:9006-9086 10 1.70e-05 GCTGTATTt ctctctct cctccgtctc chrV:5049492-5049572 58 1.70e-05 CAAACGTTTC CTCTCTCT CGCCGTTTTC chrIII:2532773-2532853 42 1.70e-05 ctcccacgca ctctctct cactTATGTA chrI:397991-398071 46 1.70e-05 actactgtct ctctctct ctGCTTCTTT chrV:6879712-6879792 40 1.70e-05 CTCTCTGCCG CTCTCTCT GACTCTCCGA chrIII:4666951-4667031 2 1.70e-05 t ctctctct ctcgttcacc chrIII:13258254-13258334 42 1.70e-05 TGctctctct ctctctct tcctttttct chrX:15276882-15276962 73 1.70e-05 ctctctcact ctctctct chrI:8786996-8787076 35 3.46e-05 GTTTTTCTGT TTCTCTCT ATCCGAGTTC chrI:4699483-4699563 49 3.46e-05 TCGTCTCTTC TTCTCTCT CAACTCTTCT chrII:6827568-6827648 38 3.46e-05 CCCCCTCTTC TTCTCTCT CAGCTGTTCA chrIII:4193755-4193835 41 3.46e-05 AATGTCTCAT TTCTCTCT CCGTCACACG chrII:7887460-7887540 6 3.46e-05 TATTC TTCTCTCT CACATTTCGC chrV:10273905-10273985 39 3.46e-05 GAGACTCTCT TTCTCTCT ATGAGAGCCA chrI:1870810-1870890 27 3.46e-05 aaaaaGCACA TTCTCTCT TCTTTCGATT chrIV:14033678-14033758 39 5.07e-05 CGCGACTGAC CGCTCTCT GCCCGTCGCG chrII:9060425-9060505 17 5.07e-05 ACACACACAT CGCTCTCT TCTTCACAGA chrIV:16491719-16491799 61 5.07e-05 TCTCTGTCTG CGCTCTCT CAAATTCTCA chrI:1873899-1873979 5 5.07e-05 tctg cgctctct gcactctcCC chrV:20005906-20005986 70 5.07e-05 ATTTTCTCTG CGCTCTCT TGT chrX:15607631-15607711 50 5.07e-05 CATCGCCACG CGCTCTCT TCCGATTCCT chrX:17513684-17513764 32 5.07e-05 TGCGTCTCTG CGCTCTCT CAATGTTCAG chrX:9337969-9338049 73 5.07e-05 ACATTCCGCT CGCTCTCT chrII:6589079-6589159 30 6.82e-05 ATACTCCTTT CTTTCTCT ATTTCTCTAT chrII:1246987-1247067 52 6.82e-05 CTTGTCCTCG CTTTCTCT GGTCAGCTCT chrII:5017317-5017397 4 8.48e-05 ctc tgctctct ttttctccca chrX:2237566-2237646 70 8.48e-05 AAGGAAACAC TGCTCTCT TCT chrV:5991545-5991625 46 8.48e-05 CTCCACACTT TGCTCtct tcttcttctt chrIII:8905420-8905500 11 8.48e-05 TTTGAGCGCA TGCTCTCT TCTTGCTCAG chrV:18079375-18079455 6 8.48e-05 CTCAA TGCTCTCT AATCGTCGTC chrX:14753715-14753795 51 1.03e-04 TACGTCCTTG TTTTCTCT GCTGCCTCTC chrV:6246709-6246789 36 1.03e-04 CGCCGCCTCG TTTTCTCT TGCGTCTCGT chrI:13547447-13547527 57 1.03e-04 TATTTAGCAT TTTtctct gcgtctctct chrII:3958852-3958932 67 1.03e-04 AGAATTGTCT TTTTCTCT GCCGAT chrIV:2219596-2219676 50 1.19e-04 CGTGGACGTT GTCTCTCT GTTGGAGTAC chrIII:5024556-5024636 62 1.19e-04 ACGCGCTTTT GTCTCTCT TGCCTGTTTT chrX:6742215-6742295 71 1.36e-04 TTTCCTAGTT CGTTCTCT GA chrV:14200180-14200260 73 1.36e-04 CACTTTGCCC CGTTCTCT chrX:8811079-8811159 63 1.53e-04 CGAAGACACA CTCTCTTT TTCACACACT chrIII:1923661-1923741 19 1.88e-04 CGATTCGTCG TGTTCTCT AATGTACAAC chrI:12039888-12039968 50 1.88e-04 TTTCCCCCTT CTCTTTCT CCATTAATCA chrX:8566047-8566127 55 1.88e-04 TTTTTATTCC CTCTttct ccgtcttcgt chrI:4298195-4298275 11 2.89e-04 cactttctcc ctctctcg tactctctGT chrV:14696948-14697028 26 2.89e-04 cttcttttct cactctct atctctctga chrI:3824417-3824497 53 2.89e-04 ACCACGCGCT CACTCTCT TCGATTTTTT chrII:11759402-11759482 9 2.89e-04 TCTCCTCC TTCTTTCT GCTGCCCAGC chrIII:10284357-10284437 5 2.89e-04 CCGT CTATCTCT CCACGATTTC chrX:5896015-5896095 36 2.89e-04 CTATGTTGTC TTCTTTCT TCTATTTTTC chrIV:5953161-5953241 13 2.89e-04 GACGTCCCAC TTCTTTCT AGAAATCAAT chrX:16929715-16929795 30 3.06e-04 TCCCTGCCTG GTTTCTCT GACTCTGGTC chrI:9113356-9113436 7 3.06e-04 TCACTC GTTTCTCT GAGCTTCGCA chrX:14561718-14561798 40 3.23e-04 TACACAACGT CGCTCTTT GGTCTTCTCG chrIV:7391675-7391755 24 3.23e-04 CAACAATATA CGCTCTTT GTGCGCGGGC chrX:8836031-8836111 25 4.08e-04 TCTCTCCTTC TTCTCTCG CCTTAACTTC chrII:11043114-11043194 48 4.08e-04 GCGCAAAGGG TTCTCTCG cacactcaca chrV:8001038-8001118 59 4.08e-04 GCTTCTCTGT TTCTCTCG ATTTCCAATG chrX:5812157-5812237 15 4.08e-04 TTTACCGGGT TTATCTCT CGGAAAAGAA chrX:7682544-7682624 49 4.08e-04 GAAATTGCTC TTCTCTCG CGACACACAC chrIII:8021069-8021149 52 4.60e-04 CGGTTGCGTA CTTTTTCT ATGACGTCTC chrI:6756554-6756634 52 4.96e-04 TAATATTAAT TTTTCTTT TGTTTCGAGG chrII:6197052-6197132 54 4.96e-04 CTTTCCCCAT TTCTGTCT TCAGTTGCTT chrIV:10937016-10937096 73 4.96e-04 GTCTCGTTTA TTTTCTTT chrI:7475324-7475404 54 5.44e-04 TCGTTTCCAA CGATCTCT CTACCCGACA chrX:14146832-14146912 19 6.12e-04 CAAACGCAAC CTTTCTCG TGATGCTGTT chrIV:11522697-11522777 9 6.12e-04 GACGCAGA CATTCTCT GCACAAATTC chrI:7494391-7494471 38 6.12e-04 TTAAAAATTG TTTTTTCT TGATTTTAAG chrIII:11657322-11657402 58 6.12e-04 AAATTGCGTA CTTTCTCG CCAACGTTTT chrX:9999832-9999912 22 6.12e-04 cttcttcttc ttttttct tttttttcCG chrI:6781713-6781793 7 6.29e-04 TGACCA GTCTCTTT CGTATGCAGA chrIII:8802106-8802186 6 6.29e-04 TCTGC GTCTCTTT TGCGCAATCG chrIII:8904278-8904358 39 6.94e-04 TACGGTGGAG CGCTGTCT GTTGGAAAAC chrV:19529392-19529472 55 6.94e-04 AGAATGTCTC CGTTCTTT AGATGACCAC chrI:7867134-7867214 17 6.94e-04 gaggaggagg TGATCTCT TATCACTTAT chrX:14557543-14557623 22 6.94e-04 TGTGTTCTAT TGATCTCT GAACATTAAC chrI:4254163-4254243 19 7.62e-04 CTCTCCCCAA GTCTTTCT GCGTCTCTTA chrIII:9546166-9546246 3 7.62e-04 CG TATTCTCT CATCCACGAG chrI:9374718-9374798 56 7.62e-04 CTGCCCGGTC CTTTGTCT TCGGCGCCAT chrIII:4649440-4649520 70 7.96e-04 CCTTCACACA CTCTCACT ACC chrX:14015875-14015955 34 7.96e-04 AATGGCACAG CGTTTTCT ACGCTCATTG chrX:14602910-14602990 3 8.48e-04 TG TGTTCTTT TGCGCCGACC chrII:5336123-5336203 2 8.48e-04 A TGTTCTTT CCCTCATCCA chrIII:8874283-8874363 31 9.13e-04 AGTCGTCAAA GTCTCTCG ATTCTCAATA chrX:14841211-14841291 12 9.13e-04 GGAGACTCAT TTTTGTCT GTTTGTCTGT chrII:1242594-1242674 42 9.63e-04 CTGTTGTTGT TGTTTTCT ACACACTCCG chrX:14747129-14747209 1 1.05e-03 . CACTCTTT CGCAATGGGC chrX:593455-593535 52 1.05e-03 CTTCTCCGAC CACTCTTT TATGCCACCA chrIV:2049053-2049133 16 1.05e-03 ACAAGTTACA CTATCTTT TGATGAGGTG chrI:1062035-1062115 1 1.05e-03 . CTCTCTTG CCAGGAGAGC chrI:6757221-6757301 48 1.05e-03 ATTTTCACTA CACTCTTT CAAGTATTGA chrIII:9272252-9272332 65 1.05e-03 GTGTTTGGAA GGCTCTTT TGCTCATG chrIII:833839-833919 34 1.08e-03 GACCCCCGTC GTCTGTCT CCGACTGGGT chrI:10035102-10035182 15 1.08e-03 TCTCACTGTC GTCTGTCT CTTCGCTCAT chrX:16682063-16682143 66 1.18e-03 GGGTGTTATT CTATTTCT AAAGGGG chrX:5801274-5801354 43 1.28e-03 TGTGTTATTC CGCTCACT TTCCAACTTC chrX:13145399-13145479 66 1.28e-03 CGCCCATTGA CGCTCACT GCCTTGT chrII:6951638-6951718 18 1.57e-03 CGGCCACACT CTCCCTCT CCCTGTGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:15071430-15071510 1.7e-05 2_[+4]_70 chrII:11746963-11747043 1.7e-05 10_[+4]_62 chrV:7728349-7728429 1.7e-05 34_[+4]_38 chrV:9006-9086 1.7e-05 9_[+4]_63 chrV:5049492-5049572 1.7e-05 57_[+4]_15 chrIII:2532773-2532853 1.7e-05 41_[+4]_31 chrI:397991-398071 1.7e-05 45_[+4]_27 chrV:6879712-6879792 1.7e-05 39_[+4]_33 chrIII:4666951-4667031 1.7e-05 1_[+4]_71 chrIII:13258254-13258334 1.7e-05 41_[+4]_31 chrX:15276882-15276962 1.7e-05 72_[+4] chrI:8786996-8787076 3.5e-05 34_[+4]_38 chrI:4699483-4699563 3.5e-05 48_[+4]_24 chrII:6827568-6827648 3.5e-05 37_[+4]_35 chrIII:4193755-4193835 3.5e-05 40_[+4]_32 chrII:7887460-7887540 3.5e-05 5_[+4]_67 chrV:10273905-10273985 3.5e-05 38_[+4]_34 chrI:1870810-1870890 3.5e-05 26_[+4]_46 chrIV:14033678-14033758 5.1e-05 38_[+4]_34 chrII:9060425-9060505 5.1e-05 16_[+4]_56 chrIV:16491719-16491799 5.1e-05 60_[+4]_12 chrI:1873899-1873979 5.1e-05 4_[+4]_68 chrV:20005906-20005986 5.1e-05 69_[+4]_3 chrX:15607631-15607711 5.1e-05 49_[+4]_23 chrX:17513684-17513764 5.1e-05 31_[+4]_41 chrX:9337969-9338049 5.1e-05 72_[+4] chrII:6589079-6589159 6.8e-05 29_[+4]_43 chrII:1246987-1247067 6.8e-05 51_[+4]_21 chrII:5017317-5017397 8.5e-05 3_[+4]_69 chrX:2237566-2237646 8.5e-05 69_[+4]_3 chrV:5991545-5991625 8.5e-05 45_[+4]_27 chrIII:8905420-8905500 8.5e-05 10_[+4]_62 chrV:18079375-18079455 8.5e-05 5_[+4]_67 chrX:14753715-14753795 0.0001 50_[+4]_22 chrV:6246709-6246789 0.0001 35_[+4]_37 chrI:13547447-13547527 0.0001 56_[+4]_16 chrII:3958852-3958932 0.0001 66_[+4]_6 chrIV:2219596-2219676 0.00012 49_[+4]_23 chrIII:5024556-5024636 0.00012 61_[+4]_11 chrX:6742215-6742295 0.00014 70_[+4]_2 chrV:14200180-14200260 0.00014 72_[+4] chrX:8811079-8811159 0.00015 62_[+4]_10 chrIII:1923661-1923741 0.00019 18_[+4]_54 chrI:12039888-12039968 0.00019 49_[+4]_23 chrX:8566047-8566127 0.00019 54_[+4]_18 chrI:4298195-4298275 0.00029 10_[+4]_62 chrV:14696948-14697028 0.00029 25_[+4]_47 chrI:3824417-3824497 0.00029 52_[+4]_20 chrII:11759402-11759482 0.00029 8_[+4]_64 chrIII:10284357-10284437 0.00029 4_[+4]_68 chrX:5896015-5896095 0.00029 35_[+4]_37 chrIV:5953161-5953241 0.00029 12_[+4]_60 chrX:16929715-16929795 0.00031 29_[+4]_43 chrI:9113356-9113436 0.00031 6_[+4]_66 chrX:14561718-14561798 0.00032 39_[+4]_33 chrIV:7391675-7391755 0.00032 23_[+4]_49 chrX:8836031-8836111 0.00041 24_[+4]_48 chrII:11043114-11043194 0.00041 47_[+4]_25 chrV:8001038-8001118 0.00041 58_[+4]_14 chrX:5812157-5812237 0.00041 14_[+4]_58 chrX:7682544-7682624 0.00041 48_[+4]_24 chrIII:8021069-8021149 0.00046 51_[+4]_21 chrI:6756554-6756634 0.0005 51_[+4]_21 chrII:6197052-6197132 0.0005 53_[+4]_19 chrIV:10937016-10937096 0.0005 72_[+4] chrI:7475324-7475404 0.00054 53_[+4]_19 chrX:14146832-14146912 0.00061 18_[+4]_54 chrIV:11522697-11522777 0.00061 8_[+4]_64 chrI:7494391-7494471 0.00061 37_[+4]_35 chrIII:11657322-11657402 0.00061 57_[+4]_15 chrX:9999832-9999912 0.00061 21_[+4]_51 chrI:6781713-6781793 0.00063 6_[+4]_66 chrIII:8802106-8802186 0.00063 5_[+4]_67 chrIII:8904278-8904358 0.00069 38_[+4]_34 chrV:19529392-19529472 0.00069 54_[+4]_18 chrI:7867134-7867214 0.00069 16_[+4]_56 chrX:14557543-14557623 0.00069 21_[+4]_51 chrI:4254163-4254243 0.00076 18_[+4]_54 chrIII:9546166-9546246 0.00076 2_[+4]_70 chrI:9374718-9374798 0.00076 55_[+4]_17 chrIII:4649440-4649520 0.0008 69_[+4]_3 chrX:14015875-14015955 0.0008 33_[+4]_39 chrX:14602910-14602990 0.00085 2_[+4]_70 chrII:5336123-5336203 0.00085 1_[+4]_71 chrIII:8874283-8874363 0.00091 30_[+4]_42 chrX:14841211-14841291 0.00091 11_[+4]_61 chrII:1242594-1242674 0.00096 41_[+4]_31 chrX:14747129-14747209 0.001 [+4]_72 chrX:593455-593535 0.001 51_[+4]_21 chrIV:2049053-2049133 0.001 15_[+4]_57 chrI:1062035-1062115 0.001 [+4]_72 chrI:6757221-6757301 0.001 47_[+4]_25 chrIII:9272252-9272332 0.001 64_[+4]_8 chrIII:833839-833919 0.0011 33_[+4]_39 chrI:10035102-10035182 0.0011 14_[+4]_58 chrX:16682063-16682143 0.0012 65_[+4]_7 chrX:5801274-5801354 0.0013 42_[+4]_30 chrX:13145399-13145479 0.0013 65_[+4]_7 chrII:6951638-6951718 0.0016 17_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCTCTCT width=8 seqs=99 chrV:15071430-15071510 ( 3) CTCTCTCT 1 chrII:11746963-11747043 ( 11) CTCTCTCT 1 chrV:7728349-7728429 ( 35) CTCTCTCT 1 chrV:9006-9086 ( 10) CTCTCTCT 1 chrV:5049492-5049572 ( 58) CTCTCTCT 1 chrIII:2532773-2532853 ( 42) CTCTCTCT 1 chrI:397991-398071 ( 46) CTCTCTCT 1 chrV:6879712-6879792 ( 40) CTCTCTCT 1 chrIII:4666951-4667031 ( 2) CTCTCTCT 1 chrIII:13258254-13258334 ( 42) CTCTCTCT 1 chrX:15276882-15276962 ( 73) CTCTCTCT 1 chrI:8786996-8787076 ( 35) TTCTCTCT 1 chrI:4699483-4699563 ( 49) TTCTCTCT 1 chrII:6827568-6827648 ( 38) TTCTCTCT 1 chrIII:4193755-4193835 ( 41) TTCTCTCT 1 chrII:7887460-7887540 ( 6) TTCTCTCT 1 chrV:10273905-10273985 ( 39) TTCTCTCT 1 chrI:1870810-1870890 ( 27) TTCTCTCT 1 chrIV:14033678-14033758 ( 39) CGCTCTCT 1 chrII:9060425-9060505 ( 17) CGCTCTCT 1 chrIV:16491719-16491799 ( 61) CGCTCTCT 1 chrI:1873899-1873979 ( 5) CGCTCTCT 1 chrV:20005906-20005986 ( 70) CGCTCTCT 1 chrX:15607631-15607711 ( 50) CGCTCTCT 1 chrX:17513684-17513764 ( 32) CGCTCTCT 1 chrX:9337969-9338049 ( 73) CGCTCTCT 1 chrII:6589079-6589159 ( 30) CTTTCTCT 1 chrII:1246987-1247067 ( 52) CTTTCTCT 1 chrII:5017317-5017397 ( 4) TGCTCTCT 1 chrX:2237566-2237646 ( 70) TGCTCTCT 1 chrV:5991545-5991625 ( 46) TGCTCTCT 1 chrIII:8905420-8905500 ( 11) TGCTCTCT 1 chrV:18079375-18079455 ( 6) TGCTCTCT 1 chrX:14753715-14753795 ( 51) TTTTCTCT 1 chrV:6246709-6246789 ( 36) TTTTCTCT 1 chrI:13547447-13547527 ( 57) TTTTCTCT 1 chrII:3958852-3958932 ( 67) TTTTCTCT 1 chrIV:2219596-2219676 ( 50) GTCTCTCT 1 chrIII:5024556-5024636 ( 62) GTCTCTCT 1 chrX:6742215-6742295 ( 71) CGTTCTCT 1 chrV:14200180-14200260 ( 73) CGTTCTCT 1 chrX:8811079-8811159 ( 63) CTCTCTTT 1 chrIII:1923661-1923741 ( 19) TGTTCTCT 1 chrI:12039888-12039968 ( 50) CTCTTTCT 1 chrX:8566047-8566127 ( 55) CTCTTTCT 1 chrI:4298195-4298275 ( 11) CTCTCTCG 1 chrV:14696948-14697028 ( 26) CACTCTCT 1 chrI:3824417-3824497 ( 53) CACTCTCT 1 chrII:11759402-11759482 ( 9) TTCTTTCT 1 chrIII:10284357-10284437 ( 5) CTATCTCT 1 chrX:5896015-5896095 ( 36) TTCTTTCT 1 chrIV:5953161-5953241 ( 13) TTCTTTCT 1 chrX:16929715-16929795 ( 30) GTTTCTCT 1 chrI:9113356-9113436 ( 7) GTTTCTCT 1 chrX:14561718-14561798 ( 40) CGCTCTTT 1 chrIV:7391675-7391755 ( 24) CGCTCTTT 1 chrX:8836031-8836111 ( 25) TTCTCTCG 1 chrII:11043114-11043194 ( 48) TTCTCTCG 1 chrV:8001038-8001118 ( 59) TTCTCTCG 1 chrX:5812157-5812237 ( 15) TTATCTCT 1 chrX:7682544-7682624 ( 49) TTCTCTCG 1 chrIII:8021069-8021149 ( 52) CTTTTTCT 1 chrI:6756554-6756634 ( 52) TTTTCTTT 1 chrII:6197052-6197132 ( 54) TTCTGTCT 1 chrIV:10937016-10937096 ( 73) TTTTCTTT 1 chrI:7475324-7475404 ( 54) CGATCTCT 1 chrX:14146832-14146912 ( 19) CTTTCTCG 1 chrIV:11522697-11522777 ( 9) CATTCTCT 1 chrI:7494391-7494471 ( 38) TTTTTTCT 1 chrIII:11657322-11657402 ( 58) CTTTCTCG 1 chrX:9999832-9999912 ( 22) TTTTTTCT 1 chrI:6781713-6781793 ( 7) GTCTCTTT 1 chrIII:8802106-8802186 ( 6) GTCTCTTT 1 chrIII:8904278-8904358 ( 39) CGCTGTCT 1 chrV:19529392-19529472 ( 55) CGTTCTTT 1 chrI:7867134-7867214 ( 17) TGATCTCT 1 chrX:14557543-14557623 ( 22) TGATCTCT 1 chrI:4254163-4254243 ( 19) GTCTTTCT 1 chrIII:9546166-9546246 ( 3) TATTCTCT 1 chrI:9374718-9374798 ( 56) CTTTGTCT 1 chrIII:4649440-4649520 ( 70) CTCTCACT 1 chrX:14015875-14015955 ( 34) CGTTTTCT 1 chrX:14602910-14602990 ( 3) TGTTCTTT 1 chrII:5336123-5336203 ( 2) TGTTCTTT 1 chrIII:8874283-8874363 ( 31) GTCTCTCG 1 chrX:14841211-14841291 ( 12) TTTTGTCT 1 chrII:1242594-1242674 ( 42) TGTTTTCT 1 chrX:14747129-14747209 ( 1) CACTCTTT 1 chrX:593455-593535 ( 52) CACTCTTT 1 chrIV:2049053-2049133 ( 16) CTATCTTT 1 chrI:1062035-1062115 ( 1) CTCTCTTG 1 chrI:6757221-6757301 ( 48) CACTCTTT 1 chrIII:9272252-9272332 ( 65) GGCTCTTT 1 chrIII:833839-833919 ( 34) GTCTGTCT 1 chrI:10035102-10035182 ( 15) GTCTGTCT 1 chrX:16682063-16682143 ( 66) CTATTTCT 1 chrX:5801274-5801354 ( 43) CGCTCACT 1 chrX:13145399-13145479 ( 66) CGCTCACT 1 chrII:6951638-6951718 ( 18) CTCCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.6474 E= 2.0e-016 -1327 104 -113 54 -182 -1327 32 129 -182 139 -1327 9 -1327 -463 -1327 195 -1327 171 -201 -108 -304 -1327 -1327 192 -1327 174 -1327 -67 -1327 -1327 -142 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 2.0e-016 0.000000 0.515152 0.111111 0.373737 0.070707 0.000000 0.303030 0.626263 0.070707 0.656566 0.000000 0.272727 0.000000 0.010101 0.000000 0.989899 0.000000 0.818182 0.060606 0.121212 0.030303 0.000000 0.000000 0.969697 0.000000 0.838384 0.000000 0.161616 0.000000 0.000000 0.090909 0.909091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTCT MEME-4 regular expression -------------------------------------------------------------------------------- [CT][TG][CT]TCTCT -------------------------------------------------------------------------------- Time 20.90 secs. ******************************************************************************** ******************************************************************************** MOTIF RCACACAC MEME-5 width = 8 sites = 35 llr = 301 E-value = 4.3e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 5:939:a: pos.-specific C :a:7:9:a probability G 4:1::::: matrix T 1:::11:: bits 2.0 * * 1.8 * ** 1.6 ** *** 1.4 ** **** Relative 1.2 ******* Entropy 1.0 ******* (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8800132-8800212 61 1.50e-05 acatacacat acacacac catccattca chrII:11043114-11043194 73 1.50e-05 acataccccc acacacac chrII:14250431-14250511 34 1.50e-05 acacacacac acacacac acagacacac chrX:949577-949657 1 1.50e-05 . ACACACAC ATACACAATG chrII:9060425-9060505 7 1.50e-05 CCTTCC ACACACAC ATCGCTCTCT chrX:6742215-6742295 20 1.50e-05 GCACGTGCAT ACACACAC ACTACCTCTC chrIII:12608765-12608845 37 1.50e-05 acaatcgcac acacacac aAATAGACGA chrIII:3677516-3677596 32 1.50e-05 GCTCACACAC ACACACAC GAGAGCCAAT chrIII:11823466-11823546 46 1.50e-05 GTCACGGTGA ACACACAC GTCGGTGTAT chrIII:13258254-13258334 7 1.50e-05 AAAGGC ACACACAC AGCATCTGTC chrX:4260470-4260550 68 1.50e-05 CGTTTGCGGT ACACACAC GCAAG chrX:7682544-7682624 61 1.50e-05 CTCTCGCGAC ACACACAC ACATACATAT chrX:5121953-5122033 66 1.50e-05 acacacagac acacacac atacata chrIII:11657322-11657402 27 2.97e-05 TTTCCGCTGT GCACACAC CGAAGTCGAC chrIV:2389125-2389205 56 5.92e-05 AGGTCGGTAC GCAAACAC CGTGACGCAC chrI:6799635-6799715 18 5.92e-05 CGAGTGGTCT GCAAACAC CGCCACGCAC chrI:12665006-12665086 25 5.92e-05 TTTAAAGTCC GCAAACAC GGCGGCGCGC chrII:9054755-9054835 14 5.92e-05 CTTTCAGTCC gcaaacac cgtcacgcac chrII:6197052-6197132 8 5.92e-05 AAAGTCT GCAAACAC AGCGACGTCA chrIII:8021069-8021149 25 5.92e-05 TCTGATGTAC GCAAACAC CGCCACGCGC chrX:10419862-10419942 52 5.92e-05 AGGGAAGTAC GCAAACAC CGATCGCTGT chrX:17151346-17151426 30 5.92e-05 CAGACAGTGT GCAAACAC CATCACGGCA chrI:3824417-3824497 37 7.47e-05 CGCTCACGAG ACACTCAC CACGCGCTCA chrIII:8874283-8874363 13 7.47e-05 CGCTCACTCT ACACTCAC AGTCGTCAAA chrII:11634320-11634400 23 1.05e-04 TCCAATGTCT TCACACAC GTCTCGTGTC chrX:8811079-8811159 72 1.05e-04 ACTCTCTTTT TCACACAC T chrX:9337969-9338049 57 1.05e-04 GTCGCGGTGT ACGCACAC ATTCCGCTCG chrV:5991545-5991625 29 1.05e-04 TCTTCTATAC ACGCACAC TCCACACTTT chrI:7475324-7475404 69 1.35e-04 TCTCTACCCG ACACATAC ACAT chrX:13145399-13145479 33 1.35e-04 TTCGTCTTCA GCACTCAC CACATTGAAA chrII:5336123-5336203 19 1.35e-04 TCCCTCATCC ACACATAC TATTTCGAGA chrX:8556782-8556862 14 1.50e-04 ATCCATACTT GCGCACAC CATCGACCCA chrIII:9817242-9817322 2 1.65e-04 T GCACATAC AGATAGAATA chrI:2577314-2577394 69 2.41e-04 ACATGGGGCG GCAATCAC AATC chrX:15566791-15566871 72 3.00e-04 GCAGTGCGCA GCACACAT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8800132-8800212 1.5e-05 60_[+5]_12 chrII:11043114-11043194 1.5e-05 72_[+5] chrII:14250431-14250511 1.5e-05 33_[+5]_39 chrX:949577-949657 1.5e-05 [+5]_72 chrII:9060425-9060505 1.5e-05 6_[+5]_66 chrX:6742215-6742295 1.5e-05 19_[+5]_53 chrIII:12608765-12608845 1.5e-05 36_[+5]_36 chrIII:3677516-3677596 1.5e-05 31_[+5]_41 chrIII:11823466-11823546 1.5e-05 45_[+5]_27 chrIII:13258254-13258334 1.5e-05 6_[+5]_66 chrX:4260470-4260550 1.5e-05 67_[+5]_5 chrX:7682544-7682624 1.5e-05 60_[+5]_12 chrX:5121953-5122033 1.5e-05 65_[+5]_7 chrIII:11657322-11657402 3e-05 26_[+5]_46 chrIV:2389125-2389205 5.9e-05 55_[+5]_17 chrI:6799635-6799715 5.9e-05 17_[+5]_55 chrI:12665006-12665086 5.9e-05 24_[+5]_48 chrII:9054755-9054835 5.9e-05 13_[+5]_59 chrII:6197052-6197132 5.9e-05 7_[+5]_65 chrIII:8021069-8021149 5.9e-05 24_[+5]_48 chrX:10419862-10419942 5.9e-05 51_[+5]_21 chrX:17151346-17151426 5.9e-05 29_[+5]_43 chrI:3824417-3824497 7.5e-05 36_[+5]_36 chrIII:8874283-8874363 7.5e-05 12_[+5]_60 chrII:11634320-11634400 0.0001 22_[+5]_50 chrX:8811079-8811159 0.0001 71_[+5]_1 chrX:9337969-9338049 0.0001 56_[+5]_16 chrV:5991545-5991625 0.0001 28_[+5]_44 chrI:7475324-7475404 0.00014 68_[+5]_4 chrX:13145399-13145479 0.00014 32_[+5]_40 chrII:5336123-5336203 0.00014 18_[+5]_54 chrX:8556782-8556862 0.00015 13_[+5]_59 chrIII:9817242-9817322 0.00016 1_[+5]_71 chrI:2577314-2577394 0.00024 68_[+5]_4 chrX:15566791-15566871 0.0003 71_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCACACAC width=8 seqs=35 chrIII:8800132-8800212 ( 61) ACACACAC 1 chrII:11043114-11043194 ( 73) ACACACAC 1 chrII:14250431-14250511 ( 34) ACACACAC 1 chrX:949577-949657 ( 1) ACACACAC 1 chrII:9060425-9060505 ( 7) ACACACAC 1 chrX:6742215-6742295 ( 20) ACACACAC 1 chrIII:12608765-12608845 ( 37) ACACACAC 1 chrIII:3677516-3677596 ( 32) ACACACAC 1 chrIII:11823466-11823546 ( 46) ACACACAC 1 chrIII:13258254-13258334 ( 7) ACACACAC 1 chrX:4260470-4260550 ( 68) ACACACAC 1 chrX:7682544-7682624 ( 61) ACACACAC 1 chrX:5121953-5122033 ( 66) ACACACAC 1 chrIII:11657322-11657402 ( 27) GCACACAC 1 chrIV:2389125-2389205 ( 56) GCAAACAC 1 chrI:6799635-6799715 ( 18) GCAAACAC 1 chrI:12665006-12665086 ( 25) GCAAACAC 1 chrII:9054755-9054835 ( 14) GCAAACAC 1 chrII:6197052-6197132 ( 8) GCAAACAC 1 chrIII:8021069-8021149 ( 25) GCAAACAC 1 chrX:10419862-10419942 ( 52) GCAAACAC 1 chrX:17151346-17151426 ( 30) GCAAACAC 1 chrI:3824417-3824497 ( 37) ACACTCAC 1 chrIII:8874283-8874363 ( 13) ACACTCAC 1 chrII:11634320-11634400 ( 23) TCACACAC 1 chrX:8811079-8811159 ( 72) TCACACAC 1 chrX:9337969-9338049 ( 57) ACGCACAC 1 chrV:5991545-5991625 ( 29) ACGCACAC 1 chrI:7475324-7475404 ( 69) ACACATAC 1 chrX:13145399-13145479 ( 33) GCACTCAC 1 chrII:5336123-5336203 ( 19) ACACATAC 1 chrX:8556782-8556862 ( 14) GCGCACAC 1 chrIII:9817242-9817322 ( 2) GCACATAC 1 chrI:2577314-2577394 ( 69) GCAATCAC 1 chrX:15566791-15566871 ( 72) GCACACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4104 E= 4.3e-006 112 -1177 72 -217 -1177 200 -1177 -1177 187 -1177 -150 -1177 4 157 -1177 -1177 183 -1177 -1177 -117 -1177 187 -1177 -158 200 -1177 -1177 -1177 -1177 196 -1177 -317 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.3e-006 0.542857 0.000000 0.400000 0.057143 0.000000 1.000000 0.000000 0.000000 0.914286 0.000000 0.085714 0.000000 0.257143 0.742857 0.000000 0.000000 0.885714 0.000000 0.000000 0.114286 0.000000 0.914286 0.000000 0.085714 1.000000 0.000000 0.000000 0.000000 0.000000 0.971429 0.000000 0.028571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACACAC MEME-5 regular expression -------------------------------------------------------------------------------- [AG]CA[CA]ACAC -------------------------------------------------------------------------------- Time 24.19 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:3959854-3959934 4.19e-04 26_[+1(1.34e-05)]_14_[+3(5.52e-05)]_\ 24 chrII:5820449-5820529 5.52e-03 49_[+2(6.22e-05)]_23 chrI:1870810-1870890 2.22e-03 26_[+4(3.46e-05)]_10_[+2(4.71e-05)]_\ 28 chrIV:14794438-14794518 9.28e-06 33_[+1(1.34e-05)]_27_[+2(1.54e-05)]_\ 4 chrX:4458094-4458174 1.60e-03 58_[+2(7.85e-05)]_14 chrIII:2780482-2780562 4.16e-03 80 chrX:5121953-5122033 1.34e-03 63_[+5(1.50e-05)]_9 chrX:4145669-4145749 7.09e-04 2_[+1(2.72e-05)]_47_[+2(3.13e-05)]_\ 15 chrI:10232656-10232736 1.25e-03 69_[+2(1.54e-05)]_3 chrIV:7391675-7391755 2.41e-03 52_[+1(9.57e-05)]_20 chrX:826121-826201 1.25e-02 28_[+2(1.54e-05)]_44 chrX:15566791-15566871 9.12e-02 80 chrV:18079375-18079455 7.59e-03 5_[+4(8.48e-05)]_36_[+2(6.22e-05)]_\ 23 chrV:10273905-10273985 4.31e-06 15_[+1(6.82e-05)]_15_[+4(3.46e-05)]_\ 9_[+2(1.54e-05)]_17 chrIV:10937016-10937096 7.86e-03 22_[+2(1.54e-05)]_50 chrII:11751776-11751856 2.88e-02 34_[+3(5.52e-05)]_38 chrX:15725113-15725193 3.34e-01 80 chrX:7682544-7682624 1.42e-03 58_[+5(1.50e-05)]_14 chrIV:5953161-5953241 7.73e-03 23_[+2(4.71e-05)]_49 chrII:7885014-7885094 3.56e-02 24_[+2(4.71e-05)]_48 chrIII:4560629-4560709 1.77e-02 11_[+1(2.72e-05)]_61 chrX:5896015-5896095 6.11e-02 80 chrIII:12369181-12369261 1.52e-03 80 chrV:1805141-1805221 8.63e-01 80 chrIV:8762639-8762719 1.93e-02 14_[+1(9.57e-05)]_58 chrIII:10599875-10599955 1.36e-03 5_[+1(2.72e-05)]_67 chrI:9374718-9374798 6.30e-01 80 chrI:2292947-2293027 1.38e-01 80 chrV:20829012-20829092 2.45e-02 40_[+2(6.22e-05)]_32 chrIV:11765695-11765775 8.35e-04 62_[+1(1.34e-05)]_10 chrI:3628740-3628820 4.11e-01 80 chrX:4260470-4260550 1.08e-01 67_[+5(1.50e-05)]_5 chrIII:4018243-4018323 2.61e-01 80 chrIII:8905420-8905500 8.72e-02 10_[+4(8.48e-05)]_62 chrX:15276882-15276962 1.00e-01 70_[+4(1.70e-05)]_2 chrII:9062002-9062082 9.67e-01 80 chrIII:3248789-3248869 5.80e-01 80 chrII:1242594-1242674 1.22e-01 80 chrX:11367761-11367841 2.72e-01 80 chrX:14557543-14557623 2.12e-01 80 chrIV:14371766-14371846 4.38e-01 80 chrV:10174739-10174819 2.13e-01 80 chrI:14528836-14528916 6.37e-01 80 chrII:1236580-1236660 2.28e-02 67_[+3(5.52e-05)]_5 chrIII:13258254-13258334 5.13e-04 6_[+5(1.50e-05)]_19_[+4(1.70e-05)]_\ [+4(1.70e-05)]_31 chrII:1246987-1247067 6.55e-02 51_[+4(6.82e-05)]_21 chrI:9380327-9380407 1.64e-02 38_[+3(5.52e-05)]_34 chrV:9562002-9562082 9.16e-05 3_[+1(6.82e-05)]_13_[+2(1.54e-05)]_\ 48 chrI:7125735-7125815 2.78e-01 80 chrII:3958852-3958932 8.31e-04 80 chrIII:12598598-12598678 7.31e-02 80 chrIII:9272252-9272332 1.50e-04 23_[+1(4.07e-05)]_8_[+2(1.54e-05)]_\ 33 chrIV:4586139-4586219 6.88e-02 80 chrII:14405335-14405415 2.23e-04 56_[+1(1.34e-05)]_16 chrII:3428381-3428461 2.96e-02 80 chrX:17151346-17151426 5.69e-02 29_[+5(5.92e-05)]_43 chrX:10419862-10419942 1.99e-02 51_[+5(5.92e-05)]_21 chrI:3806590-3806670 1.73e-02 45_[+2(6.22e-05)]_27 chrV:5991545-5991625 2.43e-02 45_[+4(8.48e-05)]_27 chrIII:5940605-5940685 3.82e-01 80 chrX:9337969-9338049 2.83e-04 72_[+4(5.07e-05)] chrIII:888041-888121 1.28e-03 41_[+2(1.54e-05)]_31 chrIII:13780539-13780619 5.42e-01 80 chrII:7887460-7887540 7.57e-03 5_[+4(3.46e-05)]_12_[+4(3.46e-05)]_\ 47 chrIV:11822011-11822091 2.39e-03 28_[+2(6.22e-05)]_19_[+1(4.07e-05)]_\ 17 chrIV:13980248-13980328 8.84e-02 80 chrII:3374011-3374091 2.76e-02 42_[+2(4.71e-05)]_30 chrIII:9443573-9443653 2.02e-03 39_[+2(3.13e-05)]_6_[+1(2.72e-05)]_\ 19 chrIV:17329038-17329118 1.76e-01 80 chrX:14983430-14983510 8.35e-01 80 chrII:9311876-9311956 3.99e-02 80 chrIII:8021069-8021149 4.44e-02 24_[+5(5.92e-05)]_48 chrX:14561718-14561798 1.13e-02 80 chrII:7838883-7838963 2.66e-02 50_[+1(9.57e-05)]_22 chrIII:434519-434599 1.50e-02 9_[+1(2.72e-05)]_4_[+1(1.34e-05)]_\ 51 chrX:8159128-8159208 2.16e-01 80 chrII:6197052-6197132 4.30e-03 7_[+5(5.92e-05)]_65 chrII:9054755-9054835 1.19e-01 13_[+5(5.92e-05)]_59 chrV:14200180-14200260 2.51e-02 80 chrI:7867134-7867214 4.83e-03 71_[+1(9.57e-05)]_1 chrIV:5091218-5091298 4.35e-02 69_[+3(5.52e-05)]_3 chrX:6378583-6378663 9.79e-01 80 chrIII:4666951-4667031 1.29e-01 1_[+4(1.70e-05)]_71 chrIII:3542205-3542285 4.15e-01 80 chrI:4139285-4139365 2.28e-01 80 chrI:9381734-9381814 9.75e-01 80 chrI:6757221-6757301 3.65e-01 80 chrX:8566047-8566127 4.66e-01 80 chrI:1062035-1062115 1.76e-04 31_[+2(1.54e-05)]_41 chrI:2577314-2577394 8.97e-02 80 chrIII:9817242-9817322 3.09e-03 80 chrX:9999832-9999912 1.85e-02 43_[+2(4.71e-05)]_29 chrV:5592467-5592547 8.67e-01 80 chrIII:2101002-2101082 3.85e-04 6_[+1(1.34e-05)]_[+1(1.34e-05)]_20_\ [+1(2.72e-05)]_30 chrX:7809796-7809876 6.56e-01 80 chrX:6097711-6097791 1.63e-01 80 chrX:5812157-5812237 4.04e-02 80 chrI:12665006-12665086 1.55e-01 24_[+5(5.92e-05)]_48 chrI:5379932-5380012 4.14e-02 9_[+1(2.72e-05)]_63 chrV:6879712-6879792 8.60e-02 39_[+4(1.70e-05)]_33 chrIII:9546166-9546246 1.38e-02 80 chrX:8556782-8556862 5.17e-02 80 chrI:13475607-13475687 3.06e-03 21_[+1(1.34e-05)]_[+1(1.34e-05)]_43 chrI:10035102-10035182 5.08e-03 43_[+2(6.22e-05)]_29 chrI:13547447-13547527 7.59e-04 8_[+1(1.34e-05)]_64 chrI:397991-398071 1.24e-01 8_[+4(1.70e-05)]_27_[+4(1.70e-05)]_\ 29 chrIII:11657322-11657402 2.96e-02 26_[+5(2.97e-05)]_46 chrX:17513684-17513764 1.02e-01 31_[+4(5.07e-05)]_41 chrI:10197215-10197295 2.54e-01 80 chrIV:10403224-10403304 8.83e-02 80 chrX:14841211-14841291 2.63e-02 80 chrII:11635159-11635239 1.91e-01 80 chrIII:11823466-11823546 1.29e-01 45_[+5(1.50e-05)]_27 chrX:15607631-15607711 1.58e-01 49_[+4(5.07e-05)]_23 chrII:15263246-15263326 1.99e-01 80 chrI:6756554-6756634 2.19e-01 80 chrX:8811079-8811159 5.99e-03 80 chrII:14248179-14248259 6.24e-02 80 chrII:5336123-5336203 3.80e-02 80 chrV:2694570-2694650 9.83e-01 80 chrIII:2532773-2532853 4.80e-02 23_[+4(1.70e-05)]_10_[+4(1.70e-05)]_\ 17_[+4(8.48e-05)]_6 chrIII:13061264-13061344 6.65e-03 42_[+3(5.52e-05)]_30 chrX:14602910-14602990 2.94e-02 37_[+2(4.71e-05)]_35 chrIII:3677516-3677596 4.16e-05 25_[+5(1.50e-05)]_13_[+2(4.71e-05)]_\ 26 chrV:8001038-8001118 1.97e-01 80 chrIII:2597138-2597218 1.79e-02 17_[+2(1.54e-05)]_55 chrX:14312666-14312746 3.56e-02 23_[+3(5.52e-05)]_49 chrX:13687285-13687365 2.49e-01 80 chrV:6246709-6246789 2.13e-01 80 chrIII:8447109-8447189 2.53e-02 32_[+3(5.52e-05)]_40 chrV:5049492-5049572 8.58e-02 57_[+4(1.70e-05)]_15 chrIII:10284357-10284437 3.19e-02 80 chrIII:4193755-4193835 8.15e-02 40_[+4(3.46e-05)]_32 chrI:7494391-7494471 4.90e-01 80 chrIII:8874283-8874363 3.27e-02 12_[+5(7.47e-05)]_60 chrX:993230-993310 2.05e-01 80 chrI:9988921-9989001 9.43e-04 45_[+1(1.34e-05)]_27 chrIV:16492585-16492665 1.08e-01 26_[+2(3.13e-05)]_46 chrI:7082222-7082302 1.01e-01 80 chrII:11634320-11634400 2.16e-01 80 chrIV:11522697-11522777 1.71e-02 80 chrII:6827568-6827648 2.07e-01 37_[+4(3.46e-05)]_35 chrIII:12608765-12608845 1.80e-02 34_[+5(1.50e-05)]_38 chrX:6737769-6737849 3.34e-02 45_[+3(5.52e-05)]_27 chrX:1454518-1454598 5.55e-02 80 chrV:20005906-20005986 4.46e-05 35_[+1(1.34e-05)]_26_[+4(5.07e-05)]_\ 3 chrIII:10634246-10634326 5.81e-01 80 chrII:12102540-12102620 2.43e-03 7_[+1(1.34e-05)]_65 chrV:9006-9086 2.59e-02 9_[+4(1.70e-05)]_63 chrX:2237566-2237646 2.85e-05 69_[+4(8.48e-05)]_3 chrX:2242971-2243051 8.78e-01 80 chrV:19529392-19529472 6.70e-01 80 chrI:6799635-6799715 4.98e-02 17_[+5(5.92e-05)]_55 chrII:5017317-5017397 1.67e-01 3_[+4(8.48e-05)]_69 chrIII:5024556-5024636 7.73e-04 29_[+2(3.13e-05)]_43 chrIV:6646091-6646171 1.63e-01 80 chrII:11759402-11759482 2.16e-03 61_[+1(9.57e-05)]_11 chrI:8409828-8409908 5.45e-02 80 chrII:6491834-6491914 3.66e-01 80 chrX:1446952-1447032 1.66e-01 80 chrX:14146832-14146912 1.86e-02 80 chrIII:4237887-4237967 1.52e-02 61_[+1(2.72e-05)]_11 chrI:9113356-9113436 1.35e-01 80 chrI:1873899-1873979 3.48e-02 4_[+4(5.07e-05)]_68 chrX:16961541-16961621 8.28e-02 80 chrX:14753715-14753795 7.96e-02 80 chrX:10568941-10569021 1.59e-01 80 chrII:6951638-6951718 2.25e-01 80 chrX:6742215-6742295 2.85e-03 19_[+5(1.50e-05)]_53 chrIV:16491719-16491799 2.09e-01 60_[+4(5.07e-05)]_12 chrIII:8795878-8795958 2.07e-02 27_[+3(5.52e-05)]_45 chrI:7500443-7500523 3.12e-02 80 chrIII:8904278-8904358 2.98e-02 80 chrII:10548913-10548993 1.38e-02 80 chrX:8231951-8232031 5.33e-02 53_[+2(4.71e-05)]_19 chrV:7728349-7728429 6.62e-02 34_[+4(1.70e-05)]_38 chrIV:2599739-2599819 4.60e-01 80 chrV:9546958-9547038 9.44e-01 80 chrIV:8782364-8782444 7.82e-01 80 chrI:2929723-2929803 6.43e-01 80 chrII:9060425-9060505 1.60e-03 6_[+5(1.50e-05)]_2_[+4(5.07e-05)]_\ 56 chrIII:9054007-9054087 3.10e-01 80 chrIV:2049053-2049133 1.49e-03 54_[+1(4.07e-05)]_18 chrX:949577-949657 2.49e-03 [+5(1.50e-05)]_72 chrI:9722248-9722328 2.87e-03 22_[+1(2.72e-05)]_50 chrIV:2389125-2389205 1.18e-01 55_[+5(5.92e-05)]_17 chrIII:4004304-4004384 1.03e-02 80 chrIV:14033678-14033758 2.21e-01 38_[+4(5.07e-05)]_34 chrII:13335279-13335359 3.36e-03 1_[+3(5.52e-05)]_2_[+3(5.52e-05)]_\ [+1(5.45e-05)]_53 chrI:12039888-12039968 1.89e-02 62_[+2(4.71e-05)]_10 chrIII:4223763-4223843 6.38e-03 80 chrIII:1923661-1923741 1.10e-01 80 chrIII:8797273-8797353 6.07e-01 80 chrII:14250431-14250511 3.69e-03 23_[+5(1.50e-05)]_[+5(1.50e-05)]_41 chrIV:6790620-6790700 1.09e-02 21_[+1(1.34e-05)]_51 chrII:11746963-11747043 4.01e-02 2_[+4(1.70e-05)]_[+4(1.70e-05)]_62 chrI:4699483-4699563 2.54e-03 48_[+4(3.46e-05)]_10_[+2(3.13e-05)]_\ 6 chrX:9932474-9932554 8.10e-01 80 chrX:17184582-17184662 4.47e-01 80 chrIII:833839-833919 1.65e-01 80 chrV:1151484-1151564 2.88e-01 80 chrIII:13070656-13070736 9.85e-02 80 chrII:11453108-11453188 1.03e-03 18_[+2(4.71e-05)]_38_[+3(5.52e-05)]_\ 8 chrII:10502826-10502906 9.96e-01 80 chrIII:13643692-13643772 2.24e-02 15_[+1(5.45e-05)]_57 chrIV:16656407-16656487 5.66e-01 80 chrII:6589079-6589159 1.60e-01 29_[+4(6.82e-05)]_43 chrI:3824417-3824497 1.80e-03 36_[+5(7.47e-05)]_36 chrX:12106209-12106289 9.95e-02 68_[+1(2.72e-05)]_4 chrV:15071430-15071510 3.76e-05 [+4(1.70e-05)]_16_[+1(2.72e-05)]_48 chrIII:4899927-4900007 7.71e-01 80 chrV:14696948-14697028 8.82e-03 72_[+1(4.07e-05)] chrX:14015875-14015955 2.50e-01 80 chrII:11749878-11749958 6.27e-03 31_[+1(9.57e-05)]_41 chrX:13145399-13145479 1.46e-01 80 chrIII:8802106-8802186 4.87e-04 72_[+1(6.82e-05)] chrX:593455-593535 6.07e-01 80 chrII:11043114-11043194 1.94e-04 56_[+5(7.47e-05)]_8_[+5(1.50e-05)] chrI:4701297-4701377 1.33e-03 55_[+1(1.34e-05)]_[+1(1.34e-05)]_9 chrV:6224692-6224772 4.89e-04 13_[+1(1.34e-05)]_3_[+3(5.52e-05)]_\ 48 chrI:9382897-9382977 7.09e-03 80 chrIV:2219596-2219676 4.54e-01 80 chrII:12222642-12222722 1.19e-02 1_[+1(1.34e-05)]_12_[+1(1.34e-05)]_\ 51 chrI:12815935-12816015 2.02e-02 20_[+1(5.45e-05)]_52 chrIII:8800132-8800212 3.67e-05 6_[+1(1.34e-05)]_46_[+5(1.50e-05)]_\ 12 chrX:14747129-14747209 7.66e-02 80 chrX:15841239-15841319 9.89e-01 80 chrIII:12905179-12905259 1.79e-01 80 chrX:5707960-5708040 9.82e-01 80 chrII:13834505-13834585 6.77e-01 80 chrX:16796878-16796958 2.33e-01 80 chrI:8786996-8787076 3.60e-02 34_[+4(3.46e-05)]_38 chrIII:4649440-4649520 1.26e-02 80 chrI:7475324-7475404 4.50e-02 80 chrX:5801274-5801354 4.79e-01 80 chrX:16682063-16682143 6.60e-01 80 chrI:4254163-4254243 3.19e-02 80 chrI:4298195-4298275 3.48e-01 80 chrI:6781713-6781793 5.13e-01 80 chrX:16929715-16929795 4.24e-01 80 chrX:11605981-11606061 5.46e-01 80 chrX:3036068-3036148 1.45e-01 80 chrX:12393981-12394061 4.94e-02 80 chrIII:10759205-10759285 2.19e-01 80 chrII:10563516-10563596 2.47e-01 80 chrX:8836031-8836111 2.51e-01 80 chrX:11606181-11606261 2.89e-02 80 chrIII:4475622-4475702 3.79e-01 80 chrIV:6336946-6337026 1.94e-03 45_[+3(5.52e-05)]_27 chrX:14560328-14560408 1.96e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************