******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/sdz-12.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:6377730-6377810 1.0000 80 chrII:12098826-12098906 1.0000 80 chrII:5208152-5208232 1.0000 80 chrIV:308887-308967 1.0000 80 chrX:16144786-16144866 1.0000 80 chrII:6890438-6890518 1.0000 80 chrIV:17187230-17187310 1.0000 80 chrI:3834224-3834304 1.0000 80 chrIV:2765197-2765277 1.0000 80 chrII:14035502-14035582 1.0000 80 chrIV:13392358-13392438 1.0000 80 chrIII:10714717-10714797 1.0000 80 chrIII:3873115-3873195 1.0000 80 chrI:1834150-1834230 1.0000 80 chrV:18576274-18576354 1.0000 80 chrIII:3795261-3795341 1.0000 80 chrII:8018301-8018381 1.0000 80 chrV:13653897-13653977 1.0000 80 chrIV:10256245-10256325 1.0000 80 chrV:2703557-2703637 1.0000 80 chrIV:2223890-2223970 1.0000 80 chrII:12795315-12795395 1.0000 80 chrI:3138014-3138094 1.0000 80 chrI:4179414-4179494 1.0000 80 chrII:10554170-10554250 1.0000 80 chrIII:3794068-3794148 1.0000 80 chrV:4689350-4689430 1.0000 80 chrIII:6165400-6165480 1.0000 80 chrV:7063966-7064046 1.0000 80 chrII:10557011-10557091 1.0000 80 chrIII:2111846-2111926 1.0000 80 chrI:7867097-7867177 1.0000 80 chrII:10447103-10447183 1.0000 80 chrIII:7726990-7727070 1.0000 80 chrI:3826594-3826674 1.0000 80 chrIII:7369736-7369816 1.0000 80 chrI:9872740-9872820 1.0000 80 chrI:7020665-7020745 1.0000 80 chrII:5219418-5219498 1.0000 80 chrV:9340383-9340463 1.0000 80 chrV:6427078-6427158 1.0000 80 chrII:9934758-9934838 1.0000 80 chrV:13908843-13908923 1.0000 80 chrIV:870545-870625 1.0000 80 chrV:19520323-19520403 1.0000 80 chrII:8746343-8746423 1.0000 80 chrI:10709112-10709192 1.0000 80 chrI:8866835-8866915 1.0000 80 chrX:2907850-2907930 1.0000 80 chrII:9278207-9278287 1.0000 80 chrIII:10325188-10325268 1.0000 80 chrIV:15900367-15900447 1.0000 80 chrIII:11692494-11692574 1.0000 80 chrIV:14735664-14735744 1.0000 80 chrV:5838889-5838969 1.0000 80 chrIV:2771011-2771091 1.0000 80 chrII:2828260-2828340 1.0000 80 chrI:5372409-5372489 1.0000 80 chrI:6094513-6094593 1.0000 80 chrIII:5550989-5551069 1.0000 80 chrV:9786951-9787031 1.0000 80 chrIII:12034398-12034478 1.0000 80 chrV:11576015-11576095 1.0000 80 chrIV:2825630-2825710 1.0000 80 chrV:6488669-6488749 1.0000 80 chrII:10450600-10450680 1.0000 80 chrI:2970999-2971079 1.0000 80 chrX:1503707-1503787 1.0000 80 chrV:7432903-7432983 1.0000 80 chrV:9625975-9626055 1.0000 80 chrII:8070268-8070348 1.0000 80 chrX:15076366-15076446 1.0000 80 chrX:7956473-7956553 1.0000 80 chrIV:2768321-2768401 1.0000 80 chrIII:9783238-9783318 1.0000 80 chrII:13163496-13163576 1.0000 80 chrV:13908621-13908701 1.0000 80 chrII:10545513-10545593 1.0000 80 chrV:6515119-6515199 1.0000 80 chrII:14605160-14605240 1.0000 80 chrII:5178862-5178942 1.0000 80 chrII:3061904-3061984 1.0000 80 chrIII:8262708-8262788 1.0000 80 chrIV:2601237-2601317 1.0000 80 chrI:743127-743207 1.0000 80 chrI:7656676-7656756 1.0000 80 chrII:8020772-8020852 1.0000 80 chrIII:1951517-1951597 1.0000 80 chrI:8868506-8868586 1.0000 80 chrV:10967163-10967243 1.0000 80 chrI:4911518-4911598 1.0000 80 chrIV:3382650-3382730 1.0000 80 chrV:1153493-1153573 1.0000 80 chrV:1269043-1269123 1.0000 80 chrII:12797425-12797505 1.0000 80 chrX:14808818-14808898 1.0000 80 chrX:1012775-1012855 1.0000 80 chrX:6740722-6740802 1.0000 80 chrII:14601023-14601103 1.0000 80 chrI:3246537-3246617 1.0000 80 chrIV:14574174-14574254 1.0000 80 chrX:4805790-4805870 1.0000 80 chrIII:13722449-13722529 1.0000 80 chrIV:10933941-10934021 1.0000 80 chrIII:9509996-9510076 1.0000 80 chrV:727824-727904 1.0000 80 chrI:5867813-5867893 1.0000 80 chrI:1668012-1668092 1.0000 80 chrIV:1353941-1354021 1.0000 80 chrV:8939774-8939854 1.0000 80 chrV:10953829-10953909 1.0000 80 chrI:10771742-10771822 1.0000 80 chrV:386651-386731 1.0000 80 chrI:6835680-6835760 1.0000 80 chrX:8088596-8088676 1.0000 80 chrIV:2768564-2768644 1.0000 80 chrV:15547842-15547922 1.0000 80 chrV:6222563-6222643 1.0000 80 chrII:11977488-11977568 1.0000 80 chrV:6044642-6044722 1.0000 80 chrV:6226683-6226763 1.0000 80 chrV:14837062-14837142 1.0000 80 chrIII:6419344-6419424 1.0000 80 chrV:14354524-14354604 1.0000 80 chrI:4137343-4137423 1.0000 80 chrI:3825801-3825881 1.0000 80 chrIII:8232941-8233021 1.0000 80 chrIII:7497324-7497404 1.0000 80 chrII:2976710-2976790 1.0000 80 chrI:9786886-9786966 1.0000 80 chrIV:4473870-4473950 1.0000 80 chrIII:823687-823767 1.0000 80 chrV:16593898-16593978 1.0000 80 chrIV:17183348-17183428 1.0000 80 chrV:10238072-10238152 1.0000 80 chrV:14847527-14847607 1.0000 80 chrII:2987273-2987353 1.0000 80 chrII:11965038-11965118 1.0000 80 chrI:7872289-7872369 1.0000 80 chrII:7324164-7324244 1.0000 80 chrI:12966035-12966115 1.0000 80 chrI:12041141-12041221 1.0000 80 chrIII:9051164-9051244 1.0000 80 chrIII:12609653-12609733 1.0000 80 chrV:10714866-10714946 1.0000 80 chrX:1451962-1452042 1.0000 80 chrX:14815610-14815690 1.0000 80 chrII:13171047-13171127 1.0000 80 chrII:4870374-4870454 1.0000 80 chrIII:12165655-12165735 1.0000 80 chrIII:1420028-1420108 1.0000 80 chrIII:10214603-10214683 1.0000 80 chrII:13071346-13071426 1.0000 80 chrIII:11176053-11176133 1.0000 80 chrIV:358998-359078 1.0000 80 chrIV:3609314-3609394 1.0000 80 chrI:7544707-7544787 1.0000 80 chrII:2985516-2985596 1.0000 80 chrI:11571904-11571984 1.0000 80 chrV:2629606-2629686 1.0000 80 chrV:13649889-13649969 1.0000 80 chrIV:8955357-8955437 1.0000 80 chrV:9088933-9089013 1.0000 80 chrX:1488827-1488907 1.0000 80 chrX:13107972-13108052 1.0000 80 chrI:9757382-9757462 1.0000 80 chrIII:13464735-13464815 1.0000 80 chrIII:8443724-8443804 1.0000 80 chrIII:64105-64185 1.0000 80 chrI:11676116-11676196 1.0000 80 chrI:8135468-8135548 1.0000 80 chrIII:3789865-3789945 1.0000 80 chrII:10543339-10543419 1.0000 80 chrI:12654702-12654782 1.0000 80 chrI:9774108-9774188 1.0000 80 chrV:6278438-6278518 1.0000 80 chrV:12510134-12510214 1.0000 80 chrV:20847994-20848074 1.0000 80 chrX:13108863-13108943 1.0000 80 chrV:14830753-14830833 1.0000 80 chrII:288908-288988 1.0000 80 chrII:6347871-6347951 1.0000 80 chrIII:13614897-13614977 1.0000 80 chrV:5667484-5667564 1.0000 80 chrIV:5580933-5581013 1.0000 80 chrIV:3337558-3337638 1.0000 80 chrII:10542095-10542175 1.0000 80 chrI:13310410-13310490 1.0000 80 chrII:10389666-10389746 1.0000 80 chrI:4673964-4674044 1.0000 80 chrIII:13765898-13765978 1.0000 80 chrX:12937709-12937789 1.0000 80 chrII:9617506-9617586 1.0000 80 chrIII:13720559-13720639 1.0000 80 chrIII:1626777-1626857 1.0000 80 chrIV:16684331-16684411 1.0000 80 chrIII:2811633-2811713 1.0000 80 chrV:6277161-6277241 1.0000 80 chrIII:1616742-1616822 1.0000 80 chrII:5353853-5353933 1.0000 80 chrIII:7278667-7278747 1.0000 80 chrIV:4413110-4413190 1.0000 80 chrII:12242746-12242826 1.0000 80 chrIV:2390423-2390503 1.0000 80 chrX:16551520-16551600 1.0000 80 chrX:11409543-11409623 1.0000 80 chrI:11221531-11221611 1.0000 80 chrX:10145213-10145293 1.0000 80 chrX:7954448-7954528 1.0000 80 chrIV:16415398-16415478 1.0000 80 chrX:7794540-7794620 1.0000 80 chrV:1805026-1805106 1.0000 80 chrI:7079428-7079508 1.0000 80 chrIII:11091103-11091183 1.0000 80 chrII:11980287-11980367 1.0000 80 chrIV:4468161-4468241 1.0000 80 chrIV:11594311-11594391 1.0000 80 chrII:5663568-5663648 1.0000 80 chrIII:1601583-1601663 1.0000 80 chrX:12206004-12206084 1.0000 80 chrI:7082268-7082348 1.0000 80 chrI:6164258-6164338 1.0000 80 chrIII:235338-235418 1.0000 80 chrI:9051230-9051310 1.0000 80 chrX:12663561-12663641 1.0000 80 chrI:12596112-12596192 1.0000 80 chrV:13646020-13646100 1.0000 80 chrV:474905-474985 1.0000 80 chrI:5372625-5372705 1.0000 80 chrIII:5025353-5025433 1.0000 80 chrII:11756825-11756905 1.0000 80 chrV:9338656-9338736 1.0000 80 chrIV:15693462-15693542 1.0000 80 chrIV:16167310-16167390 1.0000 80 chrX:8624383-8624463 1.0000 80 chrV:15505264-15505344 1.0000 80 chrIII:8983064-8983144 1.0000 80 chrIV:2639793-2639873 1.0000 80 chrV:12331950-12332030 1.0000 80 chrIII:5349408-5349488 1.0000 80 chrII:11167257-11167337 1.0000 80 chrII:6346665-6346745 1.0000 80 chrIII:10818571-10818651 1.0000 80 chrIV:16775255-16775335 1.0000 80 chrII:13066895-13066975 1.0000 80 chrIII:11830635-11830715 1.0000 80 chrIII:10270927-10271007 1.0000 80 chrIII:5305960-5306040 1.0000 80 chrV:13468313-13468393 1.0000 80 chrII:8933903-8933983 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_sdz-12/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/sdz-12.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.281 C 0.222 G 0.23 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.281 C 0.222 G 0.23 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTCAGA MEME-1 width = 8 sites = 21 llr = 193 E-value = 6.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTCAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::7:8 pos.-specific C ::::a2:2 probability G :::1:1a: matrix T aaa9:::: bits 2.2 * * 2.0 *** * * 1.7 *** * * 1.5 *** * * Relative 1.3 ***** * Entropy 1.1 ***** ** (13.3 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCAGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5305960-5306040 60 2.08e-05 ACATTTTCTA TTTTCAGA CCCAGTGCCC chrII:6346665-6346745 25 2.08e-05 TCTTATGACA TTTTCAGA CGATGACAAC chrII:288908-288988 24 2.08e-05 AAAATCCAAT TTTTCAGA TGAAACTGGT chrI:8135468-8135548 47 2.08e-05 AGAGCCCAAA TTTTCAGA AGTTACAGTT chrX:1451962-1452042 13 2.08e-05 AACTACAACA TTTTCAGA GAACGCCGCC chrV:6222563-6222643 21 2.08e-05 AATGAGAGGA TTTTCAGA GATTCTAGAA chrIII:1951517-1951597 2 2.08e-05 T TTTTCAGA ATGCTCCGCT chrIV:2601237-2601317 68 2.08e-05 ACCCAATTTT TTTTCAGA CTGTC chrIII:5550989-5551069 13 2.08e-05 ATTCCCACTA TTTTCAGA TTAATGACGC chrV:13468313-13468393 21 3.72e-05 GAGATTATGT TTTTCCGA GAGGGCTACA chrII:10543339-10543419 17 3.72e-05 AAATCAACAA TTTTCCGA CTAAAAGGCG chrII:10557011-10557091 10 3.72e-05 ACACAGTAT TTTTCCGA TCATAGTGCA chrIV:2390423-2390503 39 5.37e-05 TTTCATACCA TTTTCAGC GATTATAATT chrI:7872289-7872369 71 5.37e-05 TGTTTGTTGT TTTTCAGC CA chrII:10542095-10542175 48 7.15e-05 GTCATCGGTG TTTGCAGA CGTAGGATTT chrIII:3789865-3789945 37 7.15e-05 ACTTATTCGA TTTGCAGA TCAAATTTCG chrIV:3382650-3382730 29 7.15e-05 TTCGGCAATT TTTGCAGA TTTTCATCGA chrIV:4468161-4468241 51 8.85e-05 AAACTTGAAT TTTTCGGA AACCCCAGAC chrX:14808818-14808898 21 8.85e-05 AAAGCGTACA TTTTCGGA TGAAATAAAT chrI:6164258-6164338 35 1.02e-04 ACTTTCACCT TTTTCCGC ATTTCGATTA chrX:14815610-14815690 34 1.02e-04 GTTCATAACC TTTTCCGC CAATTTCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5305960-5306040 2.1e-05 59_[+1]_13 chrII:6346665-6346745 2.1e-05 24_[+1]_48 chrII:288908-288988 2.1e-05 23_[+1]_49 chrI:8135468-8135548 2.1e-05 46_[+1]_26 chrX:1451962-1452042 2.1e-05 12_[+1]_60 chrV:6222563-6222643 2.1e-05 20_[+1]_52 chrIII:1951517-1951597 2.1e-05 1_[+1]_71 chrIV:2601237-2601317 2.1e-05 67_[+1]_5 chrIII:5550989-5551069 2.1e-05 12_[+1]_60 chrV:13468313-13468393 3.7e-05 20_[+1]_52 chrII:10543339-10543419 3.7e-05 16_[+1]_56 chrII:10557011-10557091 3.7e-05 9_[+1]_63 chrIV:2390423-2390503 5.4e-05 38_[+1]_34 chrI:7872289-7872369 5.4e-05 70_[+1]_2 chrII:10542095-10542175 7.2e-05 47_[+1]_25 chrIII:3789865-3789945 7.2e-05 36_[+1]_36 chrIV:3382650-3382730 7.2e-05 28_[+1]_44 chrIV:4468161-4468241 8.9e-05 50_[+1]_22 chrX:14808818-14808898 8.9e-05 20_[+1]_52 chrI:6164258-6164338 0.0001 34_[+1]_38 chrX:14815610-14815690 0.0001 33_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTCAGA width=8 seqs=21 chrIII:5305960-5306040 ( 60) TTTTCAGA 1 chrII:6346665-6346745 ( 25) TTTTCAGA 1 chrII:288908-288988 ( 24) TTTTCAGA 1 chrI:8135468-8135548 ( 47) TTTTCAGA 1 chrX:1451962-1452042 ( 13) TTTTCAGA 1 chrV:6222563-6222643 ( 21) TTTTCAGA 1 chrIII:1951517-1951597 ( 2) TTTTCAGA 1 chrIV:2601237-2601317 ( 68) TTTTCAGA 1 chrIII:5550989-5551069 ( 13) TTTTCAGA 1 chrV:13468313-13468393 ( 21) TTTTCCGA 1 chrII:10543339-10543419 ( 17) TTTTCCGA 1 chrII:10557011-10557091 ( 10) TTTTCCGA 1 chrIV:2390423-2390503 ( 39) TTTTCAGC 1 chrI:7872289-7872369 ( 71) TTTTCAGC 1 chrII:10542095-10542175 ( 48) TTTGCAGA 1 chrIII:3789865-3789945 ( 37) TTTGCAGA 1 chrIV:3382650-3382730 ( 29) TTTGCAGA 1 chrIV:4468161-4468241 ( 51) TTTTCGGA 1 chrX:14808818-14808898 ( 21) TTTTCGGA 1 chrI:6164258-6164338 ( 35) TTTTCCGC 1 chrX:14815610-14815690 ( 34) TTTTCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 6.0e-001 -1104 -1104 -1104 190 -1104 -1104 -1104 190 -1104 -1104 -1104 190 -1104 -1104 -68 168 -1104 217 -1104 -1104 125 10 -127 -1104 -1104 -1104 212 -1104 153 -22 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 6.0e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 1.000000 0.000000 0.000000 0.666667 0.238095 0.095238 0.000000 0.000000 0.000000 1.000000 0.000000 0.809524 0.190476 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCAGA MEME-1 regular expression -------------------------------------------------------------------------------- TTTTC[AC]GA -------------------------------------------------------------------------------- Time 9.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GMTCCTGG MEME-2 width = 8 sites = 11 llr = 114 E-value = 6.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMTCCTGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4:::::: pos.-specific C :6:aa2:: probability G a:::::aa matrix T ::a::8:: bits 2.2 * ** ** 2.0 * *** ** 1.7 * *** ** 1.5 * *** ** Relative 1.3 * ****** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCCTGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTCCTGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3337558-3337638 49 9.56e-06 TCCACCATAT GCTCCTGG ACCGCCGCGT chrIII:13614897-13614977 28 9.56e-06 TCCCCCGCGG GCTCCTGG GCATGGTCCT chrI:12654702-12654782 40 9.56e-06 TATGCAATTG GCTCCTGG AGTTTTATAA chrIV:1353941-1354021 52 9.56e-06 GTTTCCTGGA GCTCCTGG CTCTCCACCA chrIII:8262708-8262788 47 9.56e-06 TGCCCCGGGG GCTCCTGG TGCTCCGGCA chrX:16551520-16551600 47 2.17e-05 TCACCAGTTC GATCCTGG TTCGGGGCAT chrIV:17183348-17183428 59 2.17e-05 CTTTCCGTCG GATCCTGG AGCTCCATCA chrIII:12034398-12034478 18 2.17e-05 GATGTTGGAG GATCCTGG TAGAAtgcgt chrI:3834224-3834304 11 2.17e-05 CGTAAACGGA GATCCTGG ATTGTCTTTC chrV:12331950-12332030 16 2.96e-05 AAAAAGTTTC GCTCCCGG GTGGGCTCGA chrI:9051230-9051310 24 2.96e-05 AAAAATTTTC GCTCCCGG GTGGGCTCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTCCTGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3337558-3337638 9.6e-06 48_[+2]_24 chrIII:13614897-13614977 9.6e-06 27_[+2]_45 chrI:12654702-12654782 9.6e-06 39_[+2]_33 chrIV:1353941-1354021 9.6e-06 51_[+2]_21 chrIII:8262708-8262788 9.6e-06 46_[+2]_26 chrX:16551520-16551600 2.2e-05 46_[+2]_26 chrIV:17183348-17183428 2.2e-05 58_[+2]_14 chrIII:12034398-12034478 2.2e-05 17_[+2]_55 chrI:3834224-3834304 2.2e-05 10_[+2]_62 chrV:12331950-12332030 3e-05 15_[+2]_57 chrI:9051230-9051310 3e-05 23_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTCCTGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMTCCTGG width=8 seqs=11 chrIV:3337558-3337638 ( 49) GCTCCTGG 1 chrIII:13614897-13614977 ( 28) GCTCCTGG 1 chrI:12654702-12654782 ( 40) GCTCCTGG 1 chrIV:1353941-1354021 ( 52) GCTCCTGG 1 chrIII:8262708-8262788 ( 47) GCTCCTGG 1 chrX:16551520-16551600 ( 47) GATCCTGG 1 chrIV:17183348-17183428 ( 59) GATCCTGG 1 chrIII:12034398-12034478 ( 18) GATCCTGG 1 chrI:3834224-3834304 ( 11) GATCCTGG 1 chrV:12331950-12332030 ( 16) GCTCCCGG 1 chrI:9051230-9051310 ( 24) GCTCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTCCTGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 6.6e+001 -1010 -1010 212 -1010 37 152 -1010 -1010 -1010 -1010 -1010 190 -1010 217 -1010 -1010 -1010 217 -1010 -1010 -1010 -29 -1010 161 -1010 -1010 212 -1010 -1010 -1010 212 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTCCTGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.6e+001 0.000000 0.000000 1.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTCCTGG MEME-2 regular expression -------------------------------------------------------------------------------- G[CA]TCCTGG -------------------------------------------------------------------------------- Time 15.11 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCTCCG MEME-3 width = 8 sites = 4 llr = 46 E-value = 3.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCTCCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:a:aa: probability G a::::::a matrix T ::a:a::: bits 2.2 ** * *** 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCTCCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10771742-10771822 34 9.23e-06 GGAGCTCAAT GCTCTCCG TGCGCGTCGG chrIV:1353941-1354021 32 9.23e-06 TTGTCTCCCG GCTCTCCG TTGTTTCCTG chrIII:11692494-11692574 18 9.23e-06 AGTCACCGAT GCTCTCCG GCGGCTACAG chrII:9934758-9934838 13 9.23e-06 AGAATTTTTG GCTCTCCG TTCTTCGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10771742-10771822 9.2e-06 33_[+3]_39 chrIV:1353941-1354021 9.2e-06 31_[+3]_41 chrIII:11692494-11692574 9.2e-06 17_[+3]_55 chrII:9934758-9934838 9.2e-06 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCTCCG width=8 seqs=4 chrI:10771742-10771822 ( 34) GCTCTCCG 1 chrIV:1353941-1354021 ( 32) GCTCTCCG 1 chrIII:11692494-11692574 ( 18) GCTCTCCG 1 chrII:9934758-9934838 ( 13) GCTCTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 3.6e+004 -865 -865 212 -865 -865 217 -865 -865 -865 -865 -865 190 -865 217 -865 -865 -865 -865 -865 190 -865 217 -865 -865 -865 217 -865 -865 -865 -865 212 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTCCG MEME-3 regular expression -------------------------------------------------------------------------------- GCTCTCCG -------------------------------------------------------------------------------- Time 18.88 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCGGACC MEME-4 width = 8 sites = 8 llr = 83 E-value = 4.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCGGACC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::3a:: pos.-specific C a:8:::aa probability G ::3a8::: matrix T :a:::::: bits 2.2 * * ** 2.0 ** * ** 1.7 ** * *** 1.5 ** * *** Relative 1.3 ******** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGACC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGACC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:64105-64185 2 9.68e-06 A CTCGGACC TTCCAGCCGG chrII:10545513-10545593 69 9.68e-06 ATGGTTTACC CTCGGACC ACCT chrII:2828260-2828340 36 9.68e-06 CGACCGCTAC CTCGGACC GAACGATGTG chrI:3138014-3138094 8 9.68e-06 tggacca ctcggacc acGTGGTGAC chrV:14830753-14830833 29 1.97e-05 AAATCGGTTG CTGGGACC CAGGTCGGTT chrV:16593898-16593978 67 1.97e-05 TCAACCTCAT CTGGGACC TGAAAA chrV:12331950-12332030 29 3.15e-05 CCCGGGTGGG CTCGAACC ACCAACCTTT chrI:9051230-9051310 37 3.15e-05 CCCGGGTGGG CTCGAACC ACCAACCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGACC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:64105-64185 9.7e-06 1_[+4]_71 chrII:10545513-10545593 9.7e-06 68_[+4]_4 chrII:2828260-2828340 9.7e-06 35_[+4]_37 chrI:3138014-3138094 9.7e-06 7_[+4]_65 chrV:14830753-14830833 2e-05 28_[+4]_44 chrV:16593898-16593978 2e-05 66_[+4]_6 chrV:12331950-12332030 3.2e-05 28_[+4]_44 chrI:9051230-9051310 3.2e-05 36_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGACC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCGGACC width=8 seqs=8 chrIII:64105-64185 ( 2) CTCGGACC 1 chrII:10545513-10545593 ( 69) CTCGGACC 1 chrII:2828260-2828340 ( 36) CTCGGACC 1 chrI:3138014-3138094 ( 8) CTCGGACC 1 chrV:14830753-14830833 ( 29) CTGGGACC 1 chrV:16593898-16593978 ( 67) CTGGGACC 1 chrV:12331950-12332030 ( 29) CTCGAACC 1 chrI:9051230-9051310 ( 37) CTCGAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGACC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 4.5e+004 -965 217 -965 -965 -965 -965 -965 190 -965 176 12 -965 -965 -965 212 -965 -17 -965 171 -965 183 -965 -965 -965 -965 217 -965 -965 -965 217 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGACC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGACC MEME-4 regular expression -------------------------------------------------------------------------------- CT[CG]G[GA]ACC -------------------------------------------------------------------------------- Time 22.67 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGCCTG MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGCCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::aa:: probability G a:aa:::a matrix T ::::::a: bits 2.2 ****** * 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11176053-11176133 20 8.21e-06 catctgagct gcggcctg tatttgagcc chrII:10554170-10554250 53 8.21e-06 TCAGGACCAC GCGGCCTG TAGTGACAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11176053-11176133 8.2e-06 19_[+5]_53 chrII:10554170-10554250 8.2e-06 52_[+5]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGCCTG width=8 seqs=2 chrIII:11176053-11176133 ( 20) GCGGCCTG 1 chrII:10554170-10554250 ( 53) GCGGCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.3e+005 -765 -765 212 -765 -765 217 -765 -765 -765 -765 212 -765 -765 -765 212 -765 -765 217 -765 -765 -765 217 -765 -765 -765 -765 -765 190 -765 -765 212 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCCTG MEME-5 regular expression -------------------------------------------------------------------------------- GCGGCCTG -------------------------------------------------------------------------------- Time 26.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6377730-6377810 3.95e-01 80 chrII:12098826-12098906 1.21e-01 80 chrII:5208152-5208232 8.97e-01 80 chrIV:308887-308967 7.43e-01 80 chrX:16144786-16144866 8.02e-02 80 chrII:6890438-6890518 7.92e-02 80 chrIV:17187230-17187310 7.88e-01 80 chrI:3834224-3834304 6.28e-02 10_[+2(2.17e-05)]_62 chrIV:2765197-2765277 3.67e-01 80 chrII:14035502-14035582 2.71e-01 80 chrIV:13392358-13392438 3.57e-01 80 chrIII:10714717-10714797 8.57e-01 80 chrIII:3873115-3873195 9.60e-01 80 chrI:1834150-1834230 1.53e-01 80 chrV:18576274-18576354 3.26e-01 80 chrIII:3795261-3795341 2.84e-01 80 chrII:8018301-8018381 1.68e-01 33_[+2(7.93e-05)]_39 chrV:13653897-13653977 9.96e-01 80 chrIV:10256245-10256325 5.37e-01 80 chrV:2703557-2703637 1.71e-01 80 chrIV:2223890-2223970 1.63e-01 80 chrII:12795315-12795395 3.09e-01 80 chrI:3138014-3138094 1.20e-02 7_[+4(9.68e-06)]_65 chrI:4179414-4179494 8.75e-01 80 chrII:10554170-10554250 1.36e-02 52_[+5(8.21e-06)]_20 chrIII:3794068-3794148 4.87e-01 80 chrV:4689350-4689430 2.48e-01 80 chrIII:6165400-6165480 3.56e-01 80 chrV:7063966-7064046 8.24e-01 80 chrII:10557011-10557091 3.43e-02 9_[+1(3.72e-05)]_63 chrIII:2111846-2111926 1.77e-01 80 chrI:7867097-7867177 8.45e-01 80 chrII:10447103-10447183 4.75e-01 80 chrIII:7726990-7727070 3.13e-01 80 chrI:3826594-3826674 7.17e-01 80 chrIII:7369736-7369816 3.87e-01 80 chrI:9872740-9872820 8.09e-01 80 chrI:7020665-7020745 7.82e-01 80 chrII:5219418-5219498 8.07e-01 80 chrV:9340383-9340463 9.00e-01 80 chrV:6427078-6427158 3.50e-01 80 chrII:9934758-9934838 4.81e-04 12_[+3(9.23e-06)]_36_[+2(7.93e-05)]_\ 16 chrV:13908843-13908923 7.88e-01 80 chrIV:870545-870625 8.31e-01 80 chrV:19520323-19520403 7.27e-02 80 chrII:8746343-8746423 2.40e-01 80 chrI:10709112-10709192 2.01e-01 80 chrI:8866835-8866915 5.08e-01 80 chrX:2907850-2907930 5.99e-01 80 chrII:9278207-9278287 1.19e-01 80 chrIII:10325188-10325268 9.99e-01 80 chrIV:15900367-15900447 7.53e-01 80 chrIII:11692494-11692574 4.21e-03 17_[+3(9.23e-06)]_55 chrIV:14735664-14735744 1.21e-02 80 chrV:5838889-5838969 8.76e-01 80 chrIV:2771011-2771091 2.58e-01 80 chrII:2828260-2828340 3.05e-02 35_[+4(9.68e-06)]_37 chrI:5372409-5372489 9.93e-01 80 chrI:6094513-6094593 9.15e-01 80 chrIII:5550989-5551069 4.50e-02 12_[+1(2.08e-05)]_60 chrV:9786951-9787031 4.59e-01 80 chrIII:12034398-12034478 1.49e-02 17_[+2(2.17e-05)]_55 chrV:11576015-11576095 3.35e-01 80 chrIV:2825630-2825710 2.52e-01 80 chrV:6488669-6488749 1.39e-01 80 chrII:10450600-10450680 1.46e-01 80 chrI:2970999-2971079 9.21e-01 80 chrX:1503707-1503787 6.72e-01 80 chrV:7432903-7432983 2.71e-01 80 chrV:9625975-9626055 5.02e-01 80 chrII:8070268-8070348 3.66e-01 80 chrX:15076366-15076446 7.48e-01 80 chrX:7956473-7956553 6.36e-01 80 chrIV:2768321-2768401 6.71e-01 80 chrIII:9783238-9783318 1.00e+00 80 chrII:13163496-13163576 9.77e-01 80 chrV:13908621-13908701 5.82e-01 80 chrII:10545513-10545593 4.45e-02 68_[+4(9.68e-06)]_4 chrV:6515119-6515199 5.06e-02 80 chrII:14605160-14605240 7.62e-01 80 chrII:5178862-5178942 7.79e-01 80 chrII:3061904-3061984 7.95e-01 80 chrIII:8262708-8262788 4.03e-03 46_[+2(9.56e-06)]_26 chrIV:2601237-2601317 1.66e-01 67_[+1(2.08e-05)]_5 chrI:743127-743207 6.45e-01 80 chrI:7656676-7656756 6.92e-01 80 chrII:8020772-8020852 8.81e-01 80 chrIII:1951517-1951597 4.16e-02 1_[+1(2.08e-05)]_71 chrI:8868506-8868586 7.81e-01 80 chrV:10967163-10967243 3.71e-01 80 chrI:4911518-4911598 7.60e-01 80 chrIV:3382650-3382730 2.13e-01 28_[+1(7.15e-05)]_44 chrV:1153493-1153573 5.10e-01 80 chrV:1269043-1269123 2.93e-01 80 chrII:12797425-12797505 1.12e-03 80 chrX:14808818-14808898 3.53e-01 20_[+1(8.85e-05)]_52 chrX:1012775-1012855 8.88e-01 80 chrX:6740722-6740802 2.05e-01 80 chrII:14601023-14601103 7.41e-01 80 chrI:3246537-3246617 3.99e-01 80 chrIV:14574174-14574254 5.81e-01 80 chrX:4805790-4805870 4.94e-01 80 chrIII:13722449-13722529 2.30e-01 80 chrIV:10933941-10934021 8.54e-01 80 chrIII:9509996-9510076 9.25e-01 80 chrV:727824-727904 1.24e-01 80 chrI:5867813-5867893 6.72e-01 80 chrI:1668012-1668092 6.85e-01 80 chrIV:1353941-1354021 4.30e-04 31_[+3(9.23e-06)]_12_[+2(9.56e-06)]_\ 21 chrV:8939774-8939854 1.00e+00 80 chrV:10953829-10953909 9.69e-01 80 chrI:10771742-10771822 6.35e-04 33_[+3(9.23e-06)]_39 chrV:386651-386731 6.69e-02 80 chrI:6835680-6835760 4.67e-01 80 chrX:8088596-8088676 7.30e-01 80 chrIV:2768564-2768644 6.77e-02 80 chrV:15547842-15547922 5.23e-01 80 chrV:6222563-6222643 9.46e-02 20_[+1(2.08e-05)]_52 chrII:11977488-11977568 3.75e-01 80 chrV:6044642-6044722 3.46e-01 80 chrV:6226683-6226763 6.17e-01 80 chrV:14837062-14837142 5.36e-01 80 chrIII:6419344-6419424 7.59e-01 80 chrV:14354524-14354604 5.93e-01 80 chrI:4137343-4137423 9.99e-01 80 chrI:3825801-3825881 5.85e-01 80 chrIII:8232941-8233021 9.61e-01 80 chrIII:7497324-7497404 1.10e-01 80 chrII:2976710-2976790 8.60e-01 80 chrI:9786886-9786966 4.94e-01 80 chrIV:4473870-4473950 6.55e-01 80 chrIII:823687-823767 1.92e-01 80 chrV:16593898-16593978 4.29e-02 66_[+4(1.97e-05)]_6 chrIV:17183348-17183428 3.77e-03 58_[+2(2.17e-05)]_14 chrV:10238072-10238152 7.39e-01 80 chrV:14847527-14847607 6.33e-01 80 chrII:2987273-2987353 4.75e-01 80 chrII:11965038-11965118 3.90e-01 80 chrI:7872289-7872369 1.05e-01 70_[+1(5.37e-05)]_2 chrII:7324164-7324244 6.73e-03 80 chrI:12966035-12966115 5.60e-02 80 chrI:12041141-12041221 7.94e-01 80 chrIII:9051164-9051244 5.12e-01 80 chrIII:12609653-12609733 1.63e-01 80 chrV:10714866-10714946 9.73e-01 80 chrX:1451962-1452042 1.18e-02 12_[+1(2.08e-05)]_60 chrX:14815610-14815690 5.09e-02 80 chrII:13171047-13171127 9.18e-01 80 chrII:4870374-4870454 1.99e-01 80 chrIII:12165655-12165735 9.98e-01 80 chrIII:1420028-1420108 4.29e-02 80 chrIII:10214603-10214683 5.38e-01 80 chrII:13071346-13071426 3.24e-01 80 chrIII:11176053-11176133 1.11e-03 19_[+5(8.21e-06)]_53 chrIV:358998-359078 3.29e-01 80 chrIV:3609314-3609394 5.41e-01 80 chrI:7544707-7544787 9.90e-01 80 chrII:2985516-2985596 6.24e-01 80 chrI:11571904-11571984 5.26e-01 80 chrV:2629606-2629686 9.75e-01 80 chrV:13649889-13649969 8.15e-01 80 chrIV:8955357-8955437 7.04e-01 80 chrV:9088933-9089013 1.03e-01 80 chrX:1488827-1488907 8.54e-01 80 chrX:13107972-13108052 7.76e-01 80 chrI:9757382-9757462 4.41e-01 80 chrIII:13464735-13464815 9.96e-01 80 chrIII:8443724-8443804 3.40e-01 80 chrIII:64105-64185 2.61e-03 1_[+4(9.68e-06)]_71 chrI:11676116-11676196 6.73e-01 80 chrI:8135468-8135548 1.38e-01 46_[+1(2.08e-05)]_26 chrIII:3789865-3789945 3.17e-01 36_[+1(7.15e-05)]_36 chrII:10543339-10543419 3.03e-02 16_[+1(3.72e-05)]_56 chrI:12654702-12654782 6.99e-02 39_[+2(9.56e-06)]_33 chrI:9774108-9774188 9.96e-02 80 chrV:6278438-6278518 8.76e-01 80 chrV:12510134-12510214 9.98e-01 80 chrV:20847994-20848074 7.82e-01 80 chrX:13108863-13108943 9.36e-01 80 chrV:14830753-14830833 3.50e-02 28_[+4(1.97e-05)]_44 chrII:288908-288988 5.83e-02 23_[+1(2.08e-05)]_49 chrII:6347871-6347951 9.70e-01 80 chrIII:13614897-13614977 4.58e-03 27_[+2(9.56e-06)]_45 chrV:5667484-5667564 9.85e-01 80 chrIV:5580933-5581013 4.74e-01 80 chrIV:3337558-3337638 2.03e-03 48_[+2(9.56e-06)]_24 chrII:10542095-10542175 7.64e-02 47_[+1(7.15e-05)]_25 chrI:13310410-13310490 3.58e-01 80 chrII:10389666-10389746 5.68e-01 80 chrI:4673964-4674044 9.97e-01 80 chrIII:13765898-13765978 4.52e-01 80 chrX:12937709-12937789 1.33e-02 80 chrII:9617506-9617586 7.05e-01 80 chrIII:13720559-13720639 6.32e-01 80 chrIII:1626777-1626857 2.69e-01 80 chrIV:16684331-16684411 3.87e-01 80 chrIII:2811633-2811713 3.61e-01 80 chrV:6277161-6277241 7.93e-01 80 chrIII:1616742-1616822 9.89e-01 80 chrII:5353853-5353933 6.34e-01 80 chrIII:7278667-7278747 4.71e-01 80 chrIV:4413110-4413190 8.16e-01 80 chrII:12242746-12242826 3.53e-01 80 chrIV:2390423-2390503 2.98e-01 38_[+1(5.37e-05)]_34 chrX:16551520-16551600 6.73e-02 46_[+2(2.17e-05)]_26 chrX:11409543-11409623 9.85e-01 80 chrI:11221531-11221611 1.91e-01 80 chrX:10145213-10145293 6.16e-01 80 chrX:7954448-7954528 9.09e-01 80 chrIV:16415398-16415478 5.50e-01 80 chrX:7794540-7794620 8.04e-01 80 chrV:1805026-1805106 6.29e-01 80 chrI:7079428-7079508 7.37e-01 80 chrIII:11091103-11091183 4.63e-01 80 chrII:11980287-11980367 2.90e-01 80 chrIV:4468161-4468241 2.29e-01 50_[+1(8.85e-05)]_22 chrIV:11594311-11594391 9.94e-01 80 chrII:5663568-5663648 9.99e-01 80 chrIII:1601583-1601663 6.97e-02 80 chrX:12206004-12206084 4.21e-01 80 chrI:7082268-7082348 9.99e-01 80 chrI:6164258-6164338 1.67e-01 80 chrIII:235338-235418 6.37e-02 80 chrI:9051230-9051310 1.12e-04 23_[+2(2.96e-05)]_5_[+4(3.15e-05)]_\ 36 chrX:12663561-12663641 2.41e-01 80 chrI:12596112-12596192 4.97e-02 80 chrV:13646020-13646100 6.97e-01 80 chrV:474905-474985 4.20e-01 80 chrI:5372625-5372705 8.31e-01 80 chrIII:5025353-5025433 6.45e-01 80 chrII:11756825-11756905 6.87e-01 80 chrV:9338656-9338736 9.67e-01 80 chrIV:15693462-15693542 2.52e-01 80 chrIV:16167310-16167390 9.76e-01 80 chrX:8624383-8624463 6.42e-01 80 chrV:15505264-15505344 9.51e-01 80 chrIII:8983064-8983144 8.58e-01 80 chrIV:2639793-2639873 6.84e-01 80 chrV:12331950-12332030 1.12e-04 15_[+2(2.96e-05)]_5_[+4(3.15e-05)]_\ 44 chrIII:5349408-5349488 2.49e-01 80 chrII:11167257-11167337 5.21e-01 80 chrII:6346665-6346745 1.16e-01 24_[+1(2.08e-05)]_48 chrIII:10818571-10818651 2.74e-01 80 chrIV:16775255-16775335 9.86e-01 80 chrII:13066895-13066975 9.95e-01 80 chrIII:11830635-11830715 6.59e-01 80 chrIII:10270927-10271007 6.16e-01 80 chrIII:5305960-5306040 5.33e-02 59_[+1(2.08e-05)]_13 chrV:13468313-13468393 1.33e-01 20_[+1(3.72e-05)]_52 chrII:8933903-8933983 7.45e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************