******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/sdc-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:12551099-12551179 1.0000 80 chrV:7647273-7647353 1.0000 80 chrV:3041089-3041169 1.0000 80 chrX:13435275-13435355 1.0000 80 chrX:10354016-10354096 1.0000 80 chrX:12730234-12730314 1.0000 80 chrX:5689236-5689316 1.0000 80 chrX:15811500-15811580 1.0000 80 chrX:15790600-15790680 1.0000 80 chrX:1306682-1306762 1.0000 80 chrX:10143591-10143671 1.0000 80 chrX:1371041-1371121 1.0000 80 chrIII:8054087-8054167 1.0000 80 chrX:15791985-15792065 1.0000 80 chrX:11472595-11472675 1.0000 80 chrX:17688462-17688542 1.0000 80 chrII:10652280-10652360 1.0000 80 chrIII:13272391-13272471 1.0000 80 chrX:7289724-7289804 1.0000 80 chrX:1682707-1682787 1.0000 80 chrX:13605087-13605167 1.0000 80 chrX:1387094-1387174 1.0000 80 chrX:8041115-8041195 1.0000 80 chrII:12553648-12553728 1.0000 80 chrX:11361286-11361366 1.0000 80 chrX:11899221-11899301 1.0000 80 chrX:403111-403191 1.0000 80 chrV:7657361-7657441 1.0000 80 chrX:1437247-1437327 1.0000 80 chrX:16327416-16327496 1.0000 80 chrX:1439050-1439130 1.0000 80 chrX:10756325-10756405 1.0000 80 chrX:1492313-1492393 1.0000 80 chrX:15655098-15655178 1.0000 80 chrX:10668026-10668106 1.0000 80 chrX:8048813-8048893 1.0000 80 chrX:1961513-1961593 1.0000 80 chrX:8104037-8104117 1.0000 80 chrX:788141-788221 1.0000 80 chrX:16695317-16695397 1.0000 80 chrX:3918334-3918414 1.0000 80 chrX:1383704-1383784 1.0000 80 chrX:785506-785586 1.0000 80 chrX:4978293-4978373 1.0000 80 chrX:1339069-1339149 1.0000 80 chrV:16628986-16629066 1.0000 80 chrX:1369867-1369947 1.0000 80 chrX:9636126-9636206 1.0000 80 chrX:2940659-2940739 1.0000 80 chrX:11926429-11926509 1.0000 80 chrX:805534-805614 1.0000 80 chrX:15222346-15222426 1.0000 80 chrX:13696341-13696421 1.0000 80 chrX:1339268-1339348 1.0000 80 chrX:4214796-4214876 1.0000 80 chrX:14027042-14027122 1.0000 80 chrV:3045087-3045167 1.0000 80 chrX:1871128-1871208 1.0000 80 chrX:4890313-4890393 1.0000 80 chrX:1977881-1977961 1.0000 80 chrX:1244404-1244484 1.0000 80 chrIV:4656186-4656266 1.0000 80 chrX:16202427-16202507 1.0000 80 chrI:1440898-1440978 1.0000 80 chrX:15983466-15983546 1.0000 80 chrIV:15050411-15050491 1.0000 80 chrX:17545692-17545772 1.0000 80 chrX:8053125-8053205 1.0000 80 chrX:2901281-2901361 1.0000 80 chrX:17562337-17562417 1.0000 80 chrX:16155532-16155612 1.0000 80 chrII:14406771-14406851 1.0000 80 chrX:12902472-12902552 1.0000 80 chrX:5360879-5360959 1.0000 80 chrX:8039046-8039126 1.0000 80 chrX:13669801-13669881 1.0000 80 chrX:15373888-15373968 1.0000 80 chrX:10372712-10372792 1.0000 80 chrX:11924325-11924405 1.0000 80 chrX:11384843-11384923 1.0000 80 chrIII:3623825-3623905 1.0000 80 chrX:17221987-17222067 1.0000 80 chrX:1517604-1517684 1.0000 80 chrX:1853779-1853859 1.0000 80 chrX:9637231-9637311 1.0000 80 chrX:6807681-6807761 1.0000 80 chrX:1938072-1938152 1.0000 80 chrX:16771036-16771116 1.0000 80 chrX:11361500-11361580 1.0000 80 chrX:14491327-14491407 1.0000 80 chrX:13504086-13504166 1.0000 80 chrX:13716454-13716534 1.0000 80 chrX:1914494-1914574 1.0000 80 chrX:14486599-14486679 1.0000 80 chrX:11297123-11297203 1.0000 80 chrX:1965011-1965091 1.0000 80 chrV:386336-386416 1.0000 80 chrIV:9269086-9269166 1.0000 80 chrI:14063665-14063745 1.0000 80 chrX:17369721-17369801 1.0000 80 chrIII:13019636-13019716 1.0000 80 chrX:13519153-13519233 1.0000 80 chrX:5368383-5368463 1.0000 80 chrX:12518112-12518192 1.0000 80 chrX:871159-871239 1.0000 80 chrIV:15938511-15938591 1.0000 80 chrX:9113960-9114040 1.0000 80 chrI:11699883-11699963 1.0000 80 chrX:7651281-7651361 1.0000 80 chrX:16133982-16134062 1.0000 80 chrX:1120403-1120483 1.0000 80 chrIII:12993050-12993130 1.0000 80 chrI:7753428-7753508 1.0000 80 chrX:6263390-6263470 1.0000 80 chrX:852813-852893 1.0000 80 chrX:14459117-14459197 1.0000 80 chrIV:11568519-11568599 1.0000 80 chrX:11257271-11257351 1.0000 80 chrX:10990741-10990821 1.0000 80 chrX:6806716-6806796 1.0000 80 chrV:17548749-17548829 1.0000 80 chrX:17181382-17181462 1.0000 80 chrIII:9112606-9112686 1.0000 80 chrX:13585007-13585087 1.0000 80 chrX:3467559-3467639 1.0000 80 chrII:14046665-14046745 1.0000 80 chrII:3964598-3964678 1.0000 80 chrIV:9264023-9264103 1.0000 80 chrV:116397-116477 1.0000 80 chrIV:4454973-4455053 1.0000 80 chrIV:4644555-4644635 1.0000 80 chrI:11179381-11179461 1.0000 80 chrX:1888573-1888653 1.0000 80 chrIII:2559854-2559934 1.0000 80 chrII:15058327-15058407 1.0000 80 chrX:1450494-1450574 1.0000 80 chrX:1311067-1311147 1.0000 80 chrIII:2561038-2561118 1.0000 80 chrX:13948287-13948367 1.0000 80 chrX:15438934-15439014 1.0000 80 chrX:2793828-2793908 1.0000 80 chrX:13442574-13442654 1.0000 80 chrII:6710801-6710881 1.0000 80 chrX:5818328-5818408 1.0000 80 chrX:17150197-17150277 1.0000 80 chrII:13924503-13924583 1.0000 80 chrV:155357-155437 1.0000 80 chrX:1856352-1856432 1.0000 80 chrX:13444150-13444230 1.0000 80 chrIII:11481591-11481671 1.0000 80 chrIII:4280925-4281005 1.0000 80 chrI:11783338-11783418 1.0000 80 chrX:11248279-11248359 1.0000 80 chrX:4998979-4999059 1.0000 80 chrX:7254737-7254817 1.0000 80 chrIII:3620858-3620938 1.0000 80 chrX:16376134-16376214 1.0000 80 chrI:7715718-7715798 1.0000 80 chrIII:11877447-11877527 1.0000 80 chrIII:2455637-2455717 1.0000 80 chrX:3914437-3914517 1.0000 80 chrX:8556813-8556893 1.0000 80 chrX:11947264-11947344 1.0000 80 chrX:1801141-1801221 1.0000 80 chrX:5262342-5262422 1.0000 80 chrX:15736620-15736700 1.0000 80 chrX:5775813-5775893 1.0000 80 chrX:1845623-1845703 1.0000 80 chrX:5444081-5444161 1.0000 80 chrIII:2899774-2899854 1.0000 80 chrX:1654490-1654570 1.0000 80 chrI:13351177-13351257 1.0000 80 chrX:9225482-9225562 1.0000 80 chrI:14331890-14331970 1.0000 80 chrX:13420019-13420099 1.0000 80 chrII:7810984-7811064 1.0000 80 chrX:9233964-9234044 1.0000 80 chrX:4457983-4458063 1.0000 80 chrX:6805167-6805247 1.0000 80 chrV:447143-447223 1.0000 80 chrX:2885485-2885565 1.0000 80 chrII:11535611-11535691 1.0000 80 chrX:1035233-1035313 1.0000 80 chrX:5480274-5480354 1.0000 80 chrX:16332071-16332151 1.0000 80 chrII:4622612-4622692 1.0000 80 chrX:3049437-3049517 1.0000 80 chrX:5764916-5764996 1.0000 80 chrX:13143369-13143449 1.0000 80 chrX:15725108-15725188 1.0000 80 chrV:12038964-12039044 1.0000 80 chrX:601579-601659 1.0000 80 chrI:7217438-7217518 1.0000 80 chrIII:2293195-2293275 1.0000 80 chrX:1933614-1933694 1.0000 80 chrIII:5136358-5136438 1.0000 80 chrX:11798212-11798292 1.0000 80 chrIV:10135413-10135493 1.0000 80 chrX:17315054-17315134 1.0000 80 chrX:10204500-10204580 1.0000 80 chrIII:11454207-11454287 1.0000 80 chrV:6164009-6164089 1.0000 80 chrI:8901581-8901661 1.0000 80 chrIII:4948782-4948862 1.0000 80 chrX:11210629-11210709 1.0000 80 chrX:2288155-2288235 1.0000 80 chrX:16157022-16157102 1.0000 80 chrV:6758258-6758338 1.0000 80 chrII:14360869-14360949 1.0000 80 chrII:14096942-14097022 1.0000 80 chrIII:13721223-13721303 1.0000 80 chrX:9899880-9899960 1.0000 80 chrX:1512407-1512487 1.0000 80 chrX:5122987-5123067 1.0000 80 chrIII:11704445-11704525 1.0000 80 chrX:5995667-5995747 1.0000 80 chrV:16553046-16553126 1.0000 80 chrII:3004140-3004220 1.0000 80 chrI:2831464-2831544 1.0000 80 chrIV:4243988-4244068 1.0000 80 chrIII:6537318-6537398 1.0000 80 chrX:13584086-13584166 1.0000 80 chrIII:8262797-8262877 1.0000 80 chrII:11845091-11845171 1.0000 80 chrIII:9700449-9700529 1.0000 80 chrX:14813521-14813601 1.0000 80 chrII:9262261-9262341 1.0000 80 chrX:8551862-8551942 1.0000 80 chrX:11062522-11062602 1.0000 80 chrII:14237401-14237481 1.0000 80 chrX:8163678-8163758 1.0000 80 chrII:9013466-9013546 1.0000 80 chrX:844742-844822 1.0000 80 chrII:12040430-12040510 1.0000 80 chrX:8737223-8737303 1.0000 80 chrII:11016000-11016080 1.0000 80 chrX:13598221-13598301 1.0000 80 chrX:986608-986688 1.0000 80 chrX:15725676-15725756 1.0000 80 chrI:2683038-2683118 1.0000 80 chrX:17184520-17184600 1.0000 80 chrI:4941343-4941423 1.0000 80 chrX:17610543-17610623 1.0000 80 chrX:3472417-3472497 1.0000 80 chrX:434002-434082 1.0000 80 chrX:16414675-16414755 1.0000 80 chrV:5226756-5226836 1.0000 80 chrII:8128856-8128936 1.0000 80 chrX:8039878-8039958 1.0000 80 chrX:826049-826129 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_sdc-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/sdc-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.24 C 0.26 G 0.254 T 0.246 Background letter frequencies (from file dataset with add-one prior applied): A 0.24 C 0.26 G 0.254 T 0.246 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARRRAGA MEME-1 width = 8 sites = 51 llr = 410 E-value = 2.8e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARRRAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3a5477:a pos.-specific C :::::::: probability G 7:5633a: matrix T :::::::: bits 2.1 * ** 1.9 * ** 1.6 * ** 1.4 * ** Relative 1.2 ** *** Entropy 1.0 ******** (11.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAGAAGA consensus A GAGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2683038-2683118 16 1.30e-05 agagaaaaaa gaagaaga aacagagGGG chrI:2831464-2831544 23 1.30e-05 AAGAAGGGGG GAAGAAGA CAAGAGGCGG chrI:8901581-8901661 44 1.30e-05 GATGGAAGAA GAAGAAGA CATGGATTAA chrX:5480274-5480354 13 1.30e-05 ATAAGAAGGC GAAGAAGA CGCAGTGGGA chrX:7254737-7254817 66 1.30e-05 GAAGTGagaa gaagaaga gaaggaa chrX:3467559-3467639 62 1.30e-05 GGAGGACGAC GAAGAAGA AGGAAAACCC chrX:15725108-15725188 66 2.54e-05 GGTTGCGCGC GAAAAAGA GCGCGCG chrII:4622612-4622692 31 2.54e-05 AGGTATGAGA GAAAAAGA GAAAGGGGGA chrV:155357-155437 69 2.54e-05 AGAAGAGAAA GAAAAAGA GACC chrI:7753428-7753508 49 2.54e-05 ACAGCAGCGG GAAAAAGA CCAGGCGCGG chrX:17562337-17562417 6 2.54e-05 ATAGA GAAAAAGA ACGGCAAGAC chrX:1120403-1120483 32 3.92e-05 GGAAATGAAG GAGGAAGA CGACGAGCAG chrX:13504086-13504166 5 3.92e-05 AAAA GAGGAAGA AGCACGGACA chrX:4978293-4978373 57 3.92e-05 GGGCAGGGGA GAGGAAGA AGTGCTTTGC chrV:6164009-6164089 51 5.22e-05 CGCATAGAGT GAGAAAGA GACGCAGGTG chrX:13420019-13420099 72 5.22e-05 TCAAGAAAGA GAGAAAGA T chrX:1845623-1845703 33 5.22e-05 gagggtgtga gagaaaga gaggagTCGA chrX:13442574-13442654 12 5.22e-05 CATACACAGA GAGAAAGA GACGAGAGCG chrX:8039046-8039126 21 5.22e-05 TCGAACAGGG GAGAAAGA TACATGCAAT chrX:1369867-1369947 31 5.22e-05 ACGGGGTTGA GAGAAAGA GGGGTGGTAA chrX:2885485-2885565 70 6.60e-05 GCAAGCAGTG GAAGGAGA AAG chrX:15373888-15373968 11 6.60e-05 agaagaagga gaaggaga aAATTGCGAA chrIII:3623825-3623905 40 7.99e-05 TATGCGGGAC GAAGAGGA GGCCAAATTG chrI:1440898-1440978 22 7.99e-05 AAGTGGTGCC GAAGAGGA AACAACCGCC chrX:3472417-3472497 5 1.33e-04 gata gagggaga gagTGCAAGG chrI:7715718-7715798 49 1.33e-04 GGCAATCGGA GAAAAGGA GACACACTCG chrX:17150197-17150277 46 1.33e-04 CCAGAAAATT GAGGGAGA ACACAGAGCA chrIII:9112606-9112686 29 1.33e-04 TGACCGCGCG GAGGGAGA TGCGGAGAGA chrX:6806716-6806796 2 1.33e-04 a gagggaga gggagaggga chrX:8048813-8048893 23 1.33e-04 TTGTATCGCG GAGGGAGA ATCAAGATCA chrX:1933614-1933694 71 1.59e-04 gaagtgtgcg gaggagga ag chrIII:11481591-11481671 13 1.59e-04 CCCGGGGTGA GAGGAGGA CTAGAGAGTA chrV:116397-116477 6 1.59e-04 AAGCG AAAAAAGA AGCCCAAGAA chrIV:9264023-9264103 26 1.59e-04 AACGGGAGCA AAAAAAGA CGACGGCATG chrI:14063665-14063745 58 1.59e-04 GCGGGATGTG GAGGAGGA TACTGTAGAT chrX:14491327-14491407 38 1.59e-04 GCTTCTTGAG AAAAAAGA GGAGAAGAAA chrX:16202427-16202507 40 1.59e-04 TTGTGAAGGG AAAAAAGA ACGAGACGCC chrX:1383704-1383784 10 1.59e-04 AGGGTTCGA AAAAAAGA GAGTGCGCTG chrX:434002-434082 16 1.86e-04 gagtaagaga gagagaga gagcaagagc chrII:14046665-14046745 58 1.86e-04 GAAAATGGAG AAGGAAGA GAATCAAAAG chrX:11899221-11899301 4 2.27e-04 GCC GAAGGGGA TCGATCGTGT chrX:805534-805614 51 2.40e-04 CACCCCTATA AAAGGAGA TGACTCGTTC chrX:785506-785586 24 2.67e-04 GTCATCTTGT GAAAGGGA GACATTCTCC chrX:15791985-15792065 54 2.67e-04 TGGGCAGAGA GAAAGGGA GAGGGGGGAC chrX:16376134-16376214 64 2.94e-04 GGGACGAGGA GAGGGGGA CACCTCGAC chrX:871159-871239 51 2.94e-04 GTTGAGAGGG AAAAGAGA GGTGGGGGTG chrII:14360869-14360949 23 3.49e-04 GGTGGAAATC AAGGAGGA TGGCAAAGGC chrX:5764916-5764996 67 3.75e-04 GAAGGGAATC AAGAAGGA TACAGG chrX:17181382-17181462 72 3.89e-04 CGCTTATTTG AAAGGGGA A chrX:1914494-1914574 3 3.89e-04 AA AAAGGGGA CAGTCTGTGG chrX:10354016-10354096 65 4.17e-04 TGCAAATGTG AAGGGGGA TAGTAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2683038-2683118 1.3e-05 15_[+1]_57 chrI:2831464-2831544 1.3e-05 22_[+1]_50 chrI:8901581-8901661 1.3e-05 43_[+1]_29 chrX:5480274-5480354 1.3e-05 12_[+1]_60 chrX:7254737-7254817 1.3e-05 65_[+1]_7 chrX:3467559-3467639 1.3e-05 61_[+1]_11 chrX:15725108-15725188 2.5e-05 65_[+1]_7 chrII:4622612-4622692 2.5e-05 30_[+1]_42 chrV:155357-155437 2.5e-05 68_[+1]_4 chrI:7753428-7753508 2.5e-05 48_[+1]_24 chrX:17562337-17562417 2.5e-05 5_[+1]_67 chrX:1120403-1120483 3.9e-05 31_[+1]_41 chrX:13504086-13504166 3.9e-05 4_[+1]_68 chrX:4978293-4978373 3.9e-05 56_[+1]_16 chrV:6164009-6164089 5.2e-05 50_[+1]_22 chrX:13420019-13420099 5.2e-05 71_[+1]_1 chrX:1845623-1845703 5.2e-05 32_[+1]_40 chrX:13442574-13442654 5.2e-05 11_[+1]_61 chrX:8039046-8039126 5.2e-05 20_[+1]_52 chrX:1369867-1369947 5.2e-05 30_[+1]_42 chrX:2885485-2885565 6.6e-05 69_[+1]_3 chrX:15373888-15373968 6.6e-05 10_[+1]_62 chrIII:3623825-3623905 8e-05 39_[+1]_33 chrI:1440898-1440978 8e-05 21_[+1]_51 chrX:3472417-3472497 0.00013 4_[+1]_68 chrI:7715718-7715798 0.00013 48_[+1]_24 chrX:17150197-17150277 0.00013 45_[+1]_27 chrIII:9112606-9112686 0.00013 28_[+1]_44 chrX:6806716-6806796 0.00013 1_[+1]_71 chrX:8048813-8048893 0.00013 22_[+1]_50 chrX:1933614-1933694 0.00016 70_[+1]_2 chrIII:11481591-11481671 0.00016 12_[+1]_60 chrV:116397-116477 0.00016 5_[+1]_67 chrIV:9264023-9264103 0.00016 25_[+1]_47 chrI:14063665-14063745 0.00016 57_[+1]_15 chrX:14491327-14491407 0.00016 37_[+1]_35 chrX:16202427-16202507 0.00016 39_[+1]_33 chrX:1383704-1383784 0.00016 9_[+1]_63 chrX:434002-434082 0.00019 15_[+1]_57 chrII:14046665-14046745 0.00019 57_[+1]_15 chrX:11899221-11899301 0.00023 3_[+1]_69 chrX:805534-805614 0.00024 50_[+1]_22 chrX:785506-785586 0.00027 23_[+1]_49 chrX:15791985-15792065 0.00027 53_[+1]_19 chrX:16376134-16376214 0.00029 63_[+1]_9 chrX:871159-871239 0.00029 50_[+1]_22 chrII:14360869-14360949 0.00035 22_[+1]_50 chrX:5764916-5764996 0.00038 66_[+1]_6 chrX:17181382-17181462 0.00039 71_[+1]_1 chrX:1914494-1914574 0.00039 2_[+1]_70 chrX:10354016-10354096 0.00042 64_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARRRAGA width=8 seqs=51 chrI:2683038-2683118 ( 16) GAAGAAGA 1 chrI:2831464-2831544 ( 23) GAAGAAGA 1 chrI:8901581-8901661 ( 44) GAAGAAGA 1 chrX:5480274-5480354 ( 13) GAAGAAGA 1 chrX:7254737-7254817 ( 66) GAAGAAGA 1 chrX:3467559-3467639 ( 62) GAAGAAGA 1 chrX:15725108-15725188 ( 66) GAAAAAGA 1 chrII:4622612-4622692 ( 31) GAAAAAGA 1 chrV:155357-155437 ( 69) GAAAAAGA 1 chrI:7753428-7753508 ( 49) GAAAAAGA 1 chrX:17562337-17562417 ( 6) GAAAAAGA 1 chrX:1120403-1120483 ( 32) GAGGAAGA 1 chrX:13504086-13504166 ( 5) GAGGAAGA 1 chrX:4978293-4978373 ( 57) GAGGAAGA 1 chrV:6164009-6164089 ( 51) GAGAAAGA 1 chrX:13420019-13420099 ( 72) GAGAAAGA 1 chrX:1845623-1845703 ( 33) GAGAAAGA 1 chrX:13442574-13442654 ( 12) GAGAAAGA 1 chrX:8039046-8039126 ( 21) GAGAAAGA 1 chrX:1369867-1369947 ( 31) GAGAAAGA 1 chrX:2885485-2885565 ( 70) GAAGGAGA 1 chrX:15373888-15373968 ( 11) GAAGGAGA 1 chrIII:3623825-3623905 ( 40) GAAGAGGA 1 chrI:1440898-1440978 ( 22) GAAGAGGA 1 chrX:3472417-3472497 ( 5) GAGGGAGA 1 chrI:7715718-7715798 ( 49) GAAAAGGA 1 chrX:17150197-17150277 ( 46) GAGGGAGA 1 chrIII:9112606-9112686 ( 29) GAGGGAGA 1 chrX:6806716-6806796 ( 2) GAGGGAGA 1 chrX:8048813-8048893 ( 23) GAGGGAGA 1 chrX:1933614-1933694 ( 71) GAGGAGGA 1 chrIII:11481591-11481671 ( 13) GAGGAGGA 1 chrV:116397-116477 ( 6) AAAAAAGA 1 chrIV:9264023-9264103 ( 26) AAAAAAGA 1 chrI:14063665-14063745 ( 58) GAGGAGGA 1 chrX:14491327-14491407 ( 38) AAAAAAGA 1 chrX:16202427-16202507 ( 40) AAAAAAGA 1 chrX:1383704-1383784 ( 10) AAAAAAGA 1 chrX:434002-434082 ( 16) GAGAGAGA 1 chrII:14046665-14046745 ( 58) AAGGAAGA 1 chrX:11899221-11899301 ( 4) GAAGGGGA 1 chrX:805534-805614 ( 51) AAAGGAGA 1 chrX:785506-785586 ( 24) GAAAGGGA 1 chrX:15791985-15792065 ( 54) GAAAGGGA 1 chrX:16376134-16376214 ( 64) GAGGGGGA 1 chrX:871159-871239 ( 51) AAAAGAGA 1 chrII:14360869-14360949 ( 23) AAGGAGGA 1 chrX:5764916-5764996 ( 67) AAGAAGGA 1 chrX:17181382-17181462 ( 72) AAAGGGGA 1 chrX:1914494-1914574 ( 3) AAAGGGGA 1 chrX:10354016-10354096 ( 65) AAGGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4104 E= 2.8e-011 8 -1232 155 -1232 206 -1232 -1232 -1232 119 -1232 83 -1232 84 -1232 116 -1232 147 -1232 39 -1232 155 -1232 21 -1232 -1232 -1232 198 -1232 206 -1232 -1232 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 2.8e-011 0.254902 0.000000 0.745098 0.000000 1.000000 0.000000 0.000000 0.000000 0.549020 0.000000 0.450980 0.000000 0.431373 0.000000 0.568627 0.000000 0.666667 0.000000 0.333333 0.000000 0.705882 0.000000 0.294118 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]A[AG][GA][AG][AG]GA -------------------------------------------------------------------------------- Time 5.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TCYCYYTY MEME-2 width = 8 sites = 70 llr = 490 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCYCYYTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :9576713 probability G :1:::::: matrix T a:534397 bits 2.1 * 1.9 * 1.6 ** * 1.4 ** * Relative 1.2 ** * * Entropy 1.0 **** *** (10.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCCCCTT consensus TTTT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCYYTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17610543-17610623 69 3.44e-05 TTGCGCATTT TCCCCCTT TCCG chrX:17545692-17545772 39 3.44e-05 GGATTGTTAT TCTCCCTT CGCAATAAAA chrX:805534-805614 26 3.44e-05 CCCGCGTCTT TCCCCCTT TCCCGTTCAC chrX:1339069-1339149 28 3.44e-05 AGGAGACTAT TCTCCCTT GGGAAACCTT chrX:785506-785586 37 3.44e-05 AGGGAGACAT TCTCCCTT TGCCTATTTC chrX:10668026-10668106 23 3.44e-05 GGCAATAATT TCCCCCTT CGCGTTGTCG chrX:16327416-16327496 39 3.44e-05 CTGCCTCTAT TCTCCCTT CGCGTTTATT chrX:15811500-15811580 37 3.44e-05 ACCGTAGTTT TCTCCCTT CGCTTTCCTT chrV:3041089-3041169 19 3.44e-05 AACCCGTTTT TCTCCCTT CGCGATGAAG chrX:8039878-8039958 71 6.70e-05 TCTACCGTAA TCCCTCTT GC chrIII:4948782-4948862 29 6.70e-05 TTCTCTGTCA TCTCTCTT TTCTAAACAC chrX:16332071-16332151 30 6.70e-05 ACACACTCAC TCTCTCTT TTGAAGGTCG chrX:17181382-17181462 47 6.70e-05 tctctctctc tctctctT CACTTGTCGC chrX:12902472-12902552 12 6.70e-05 TCTTCGTGCT TCTCTCTT GCTTTTGCCT chrX:8053125-8053205 39 6.70e-05 CCCTCCCGCT TCTCTCTT CCTACCGTGC chrX:1977881-1977961 32 6.70e-05 CCGCGCGCGC TCCCTCTT TCTCAACCTC chrX:788141-788221 73 6.70e-05 ATTGTGTATA TCTCTCTT chrV:16553046-16553126 69 9.96e-05 TTTTCGCAGA TCCCCTTT TCGC chrII:13924503-13924583 21 9.96e-05 GTTAATTCTC TCTCCTTT CGCTCTAACT chrX:15655098-15655178 19 9.96e-05 TAGTTTACCC TCCCCTTT CCAAACCTTA chrX:17688462-17688542 46 9.96e-05 TACGACATCT TCCCCTTT AGCAATAggc chrX:15790600-15790680 8 9.96e-05 AAATAGT TCCCCTTT AGTTCGAACA chrX:8556813-8556893 66 1.36e-04 CCTCTCCATT TCCCCCTC CACCATT chrX:14459117-14459197 12 1.36e-04 CGAACTCTGC TCCCCCTC TTTTTTACAG chrIV:9269086-9269166 64 1.36e-04 GTGTGCTCAC TCCCCCTC CACACATAC chrX:13504086-13504166 72 1.36e-04 GTCGCTAGTT TCCCCCTC A chrX:844742-844822 20 1.67e-04 CTCCTGCCCC TCCCTTTT TCCTTCATCT chrX:13669801-13669881 63 1.67e-04 CTTTCTACTA TCTCTTTT CACTGTTCAC chrX:16695317-16695397 14 1.67e-04 TTTGTAACAT TCCCTTTT ACGTGTCTAT chrX:1492313-1492393 44 1.67e-04 GGTGCATATA TCCCTTTT TCCTATTTGG chrV:5226756-5226836 27 2.34e-04 GCATTGTTGC TCTCTCTC GCGGGCGCGA chrX:16414675-16414755 73 2.34e-04 CCCTCCTCTA TCTCTCTC chrIII:8262797-8262877 14 2.34e-04 GTCCTGGGGC TCCTCCTT GTCCATCAGC chrI:11783338-11783418 11 2.34e-04 CCTGCTGGCT TCCTCCTT GAGCCGAGGC chrX:13948287-13948367 10 2.34e-04 CTCAAAGCA TCTCTCTC CCCCCGCTTC chrIII:12993050-12993130 7 2.34e-04 ATCTCT TCCTCCTT CTCCGTTGTT chrI:4941343-4941423 54 2.68e-04 GCCTCCTGCT tctccttc ccgccctctt chrX:11947264-11947344 27 2.68e-04 TACGACAAAT TCCCCTTC ACGTACACGC chrIII:9700449-9700529 51 3.62e-04 ACTGCTTTCT TCTTCTTT CTCCCCATCC chrX:1439050-1439130 32 3.62e-04 CTCCATACCC TCCCTTTC AAATCTTCAT chrII:6710801-6710881 8 3.97e-04 CTCCTGG TCCTCCTC TGTATCCTGG chrX:2793828-2793908 19 3.97e-04 TTGCGTCGTC TCCTCCTC CCAAATCTCT chrX:5368383-5368463 13 3.97e-04 TCTTCACGGC TCCTCCTC CACGATGTGG chrX:11384843-11384923 15 3.97e-04 TCCGCTCGTT TCCTCCTC CTACACCCTC chrX:11798212-11798292 64 4.26e-04 AGAAATGCGC TCCTTTTT TCTCTAACT chrIV:15938511-15938591 5 4.26e-04 aatt tctttttt ccaatctttg chrIII:8054087-8054167 16 4.26e-04 TGCTTCTACA TCTTTTTT AACCACGAGA chrX:6807681-6807761 49 4.59e-04 CTGTTCTTAT TCCTTCTC CGTCTCACAT chrII:9013466-9013546 12 5.27e-04 cctctatgtc tcctcttc GATGGAGCAC chrII:7810984-7811064 71 5.27e-04 AAGGCGTGTA TCTCCCCT CT chrX:5818328-5818408 2 5.27e-04 A TCTTCTTC CGCGAGACTC chrI:14063665-14063745 14 5.27e-04 GGAGGGGAGG TCTTCTTC GCCACGGAAG chrV:3045087-3045167 4 5.27e-04 TTA TCCTCTTC TCACCTCAAA chrX:7289724-7289804 29 5.27e-04 CGTTCACCTC TCCCCCCT GCCCAGATGT chrX:9113960-9114040 20 5.59e-04 CCATTTCCTC TCTCACTT TACCCTCTCT chrX:1871128-1871208 8 5.59e-04 GCTGTGC TCTCACTT CTCTAAACAT chrIII:13272391-13272471 19 5.59e-04 TTGCTGTCAC TCTCACTT TATATTCCTT chrX:9233964-9234044 14 6.58e-04 GGACCTCCAG TCTCTCCT GGCTCTCCGA chrX:15736620-15736700 47 6.58e-04 CGGTCATTGT TGCCCCTT CGCTATGTGT chrV:155357-155437 1 6.58e-04 . TGCCCCTT GGGGGTGGGG chrX:1311067-1311147 8 6.58e-04 TGTCATT TCTTTTTC CCGAATGTGT chrX:11924325-11924405 26 6.58e-04 CTTGCCCTTG TCCTTTTC TCCATCGATG chrX:403111-403191 33 6.58e-04 AGGGATCAAA TCCCTCCT CGCGCGAAAT chrX:13435275-13435355 9 6.58e-04 CTCATTAT TGTCCCTT TGCTAGCTCA chrII:12551099-12551179 46 6.58e-04 GACTGTCCAC TGTCCCTT CGCTTATTGT chrX:4998979-4999059 1 6.93e-04 . TCCCCTCT CTGTCGATGC chrX:13584086-13584166 41 7.93e-04 CCTCACCCCC TCTCCCCC TATCTGCTGT chrX:1035233-1035313 17 8.57e-04 CACACTGTGT TCTCTTCT CTTGCAGGGC chrX:16157022-16157102 53 1.19e-03 CGCGGCCAtg tgtctctc tgtgcgtgtg chrX:13598221-13598301 22 1.58e-03 ctctccgcta tctctctA CGGTCGTCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCYYTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17610543-17610623 3.4e-05 68_[+2]_4 chrX:17545692-17545772 3.4e-05 38_[+2]_34 chrX:805534-805614 3.4e-05 25_[+2]_47 chrX:1339069-1339149 3.4e-05 27_[+2]_45 chrX:785506-785586 3.4e-05 36_[+2]_36 chrX:10668026-10668106 3.4e-05 22_[+2]_50 chrX:16327416-16327496 3.4e-05 38_[+2]_34 chrX:15811500-15811580 3.4e-05 36_[+2]_36 chrV:3041089-3041169 3.4e-05 18_[+2]_54 chrX:8039878-8039958 6.7e-05 70_[+2]_2 chrIII:4948782-4948862 6.7e-05 28_[+2]_44 chrX:16332071-16332151 6.7e-05 29_[+2]_43 chrX:17181382-17181462 6.7e-05 46_[+2]_26 chrX:12902472-12902552 6.7e-05 11_[+2]_61 chrX:8053125-8053205 6.7e-05 38_[+2]_34 chrX:1977881-1977961 6.7e-05 31_[+2]_41 chrX:788141-788221 6.7e-05 72_[+2] chrV:16553046-16553126 0.0001 68_[+2]_4 chrII:13924503-13924583 0.0001 20_[+2]_52 chrX:15655098-15655178 0.0001 18_[+2]_54 chrX:17688462-17688542 0.0001 45_[+2]_27 chrX:15790600-15790680 0.0001 7_[+2]_65 chrX:8556813-8556893 0.00014 65_[+2]_7 chrX:14459117-14459197 0.00014 11_[+2]_61 chrIV:9269086-9269166 0.00014 63_[+2]_9 chrX:13504086-13504166 0.00014 71_[+2]_1 chrX:844742-844822 0.00017 19_[+2]_53 chrX:13669801-13669881 0.00017 62_[+2]_10 chrX:16695317-16695397 0.00017 13_[+2]_59 chrX:1492313-1492393 0.00017 43_[+2]_29 chrV:5226756-5226836 0.00023 26_[+2]_46 chrX:16414675-16414755 0.00023 72_[+2] chrIII:8262797-8262877 0.00023 13_[+2]_59 chrI:11783338-11783418 0.00023 10_[+2]_62 chrX:13948287-13948367 0.00023 9_[+2]_63 chrIII:12993050-12993130 0.00023 6_[+2]_66 chrI:4941343-4941423 0.00027 53_[+2]_19 chrX:11947264-11947344 0.00027 26_[+2]_46 chrIII:9700449-9700529 0.00036 50_[+2]_22 chrX:1439050-1439130 0.00036 31_[+2]_41 chrII:6710801-6710881 0.0004 7_[+2]_65 chrX:2793828-2793908 0.0004 18_[+2]_54 chrX:5368383-5368463 0.0004 12_[+2]_60 chrX:11384843-11384923 0.0004 14_[+2]_58 chrX:11798212-11798292 0.00043 63_[+2]_9 chrIV:15938511-15938591 0.00043 4_[+2]_68 chrIII:8054087-8054167 0.00043 15_[+2]_57 chrX:6807681-6807761 0.00046 48_[+2]_24 chrII:9013466-9013546 0.00053 11_[+2]_61 chrII:7810984-7811064 0.00053 70_[+2]_2 chrX:5818328-5818408 0.00053 1_[+2]_71 chrI:14063665-14063745 0.00053 13_[+2]_59 chrV:3045087-3045167 0.00053 3_[+2]_69 chrX:7289724-7289804 0.00053 28_[+2]_44 chrX:9113960-9114040 0.00056 19_[+2]_53 chrX:1871128-1871208 0.00056 7_[+2]_65 chrIII:13272391-13272471 0.00056 18_[+2]_54 chrX:9233964-9234044 0.00066 13_[+2]_59 chrX:15736620-15736700 0.00066 46_[+2]_26 chrV:155357-155437 0.00066 [+2]_72 chrX:1311067-1311147 0.00066 7_[+2]_65 chrX:11924325-11924405 0.00066 25_[+2]_47 chrX:403111-403191 0.00066 32_[+2]_40 chrX:13435275-13435355 0.00066 8_[+2]_64 chrII:12551099-12551179 0.00066 45_[+2]_27 chrX:4998979-4999059 0.00069 [+2]_72 chrX:13584086-13584166 0.00079 40_[+2]_32 chrX:1035233-1035313 0.00086 16_[+2]_56 chrX:16157022-16157102 0.0012 52_[+2]_20 chrX:13598221-13598301 0.0016 21_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCYYTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCYCYYTY width=8 seqs=70 chrX:17610543-17610623 ( 69) TCCCCCTT 1 chrX:17545692-17545772 ( 39) TCTCCCTT 1 chrX:805534-805614 ( 26) TCCCCCTT 1 chrX:1339069-1339149 ( 28) TCTCCCTT 1 chrX:785506-785586 ( 37) TCTCCCTT 1 chrX:10668026-10668106 ( 23) TCCCCCTT 1 chrX:16327416-16327496 ( 39) TCTCCCTT 1 chrX:15811500-15811580 ( 37) TCTCCCTT 1 chrV:3041089-3041169 ( 19) TCTCCCTT 1 chrX:8039878-8039958 ( 71) TCCCTCTT 1 chrIII:4948782-4948862 ( 29) TCTCTCTT 1 chrX:16332071-16332151 ( 30) TCTCTCTT 1 chrX:17181382-17181462 ( 47) TCTCTCTT 1 chrX:12902472-12902552 ( 12) TCTCTCTT 1 chrX:8053125-8053205 ( 39) TCTCTCTT 1 chrX:1977881-1977961 ( 32) TCCCTCTT 1 chrX:788141-788221 ( 73) TCTCTCTT 1 chrV:16553046-16553126 ( 69) TCCCCTTT 1 chrII:13924503-13924583 ( 21) TCTCCTTT 1 chrX:15655098-15655178 ( 19) TCCCCTTT 1 chrX:17688462-17688542 ( 46) TCCCCTTT 1 chrX:15790600-15790680 ( 8) TCCCCTTT 1 chrX:8556813-8556893 ( 66) TCCCCCTC 1 chrX:14459117-14459197 ( 12) TCCCCCTC 1 chrIV:9269086-9269166 ( 64) TCCCCCTC 1 chrX:13504086-13504166 ( 72) TCCCCCTC 1 chrX:844742-844822 ( 20) TCCCTTTT 1 chrX:13669801-13669881 ( 63) TCTCTTTT 1 chrX:16695317-16695397 ( 14) TCCCTTTT 1 chrX:1492313-1492393 ( 44) TCCCTTTT 1 chrV:5226756-5226836 ( 27) TCTCTCTC 1 chrX:16414675-16414755 ( 73) TCTCTCTC 1 chrIII:8262797-8262877 ( 14) TCCTCCTT 1 chrI:11783338-11783418 ( 11) TCCTCCTT 1 chrX:13948287-13948367 ( 10) TCTCTCTC 1 chrIII:12993050-12993130 ( 7) TCCTCCTT 1 chrI:4941343-4941423 ( 54) TCTCCTTC 1 chrX:11947264-11947344 ( 27) TCCCCTTC 1 chrIII:9700449-9700529 ( 51) TCTTCTTT 1 chrX:1439050-1439130 ( 32) TCCCTTTC 1 chrII:6710801-6710881 ( 8) TCCTCCTC 1 chrX:2793828-2793908 ( 19) TCCTCCTC 1 chrX:5368383-5368463 ( 13) TCCTCCTC 1 chrX:11384843-11384923 ( 15) TCCTCCTC 1 chrX:11798212-11798292 ( 64) TCCTTTTT 1 chrIV:15938511-15938591 ( 5) TCTTTTTT 1 chrIII:8054087-8054167 ( 16) TCTTTTTT 1 chrX:6807681-6807761 ( 49) TCCTTCTC 1 chrII:9013466-9013546 ( 12) TCCTCTTC 1 chrII:7810984-7811064 ( 71) TCTCCCCT 1 chrX:5818328-5818408 ( 2) TCTTCTTC 1 chrI:14063665-14063745 ( 14) TCTTCTTC 1 chrV:3045087-3045167 ( 4) TCCTCTTC 1 chrX:7289724-7289804 ( 29) TCCCCCCT 1 chrX:9113960-9114040 ( 20) TCTCACTT 1 chrX:1871128-1871208 ( 8) TCTCACTT 1 chrIII:13272391-13272471 ( 19) TCTCACTT 1 chrX:9233964-9234044 ( 14) TCTCTCCT 1 chrX:15736620-15736700 ( 47) TGCCCCTT 1 chrV:155357-155437 ( 1) TGCCCCTT 1 chrX:1311067-1311147 ( 8) TCTTTTTC 1 chrX:11924325-11924405 ( 26) TCCTTTTC 1 chrX:403111-403191 ( 33) TCCCTCCT 1 chrX:13435275-13435355 ( 9) TGTCCCTT 1 chrII:12551099-12551179 ( 46) TGTCCCTT 1 chrX:4998979-4999059 ( 1) TCCCCTCT 1 chrX:13584086-13584166 ( 41) TCTCCCCC 1 chrX:1035233-1035313 ( 17) TCTCTTCT 1 chrX:16157022-16157102 ( 53) TGTCTCTC 1 chrX:13598221-13598301 ( 22) TCTCTCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCYYTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.84505 E= 2.2e+001 -1277 -1277 -1277 202 -1277 184 -183 -1277 -1277 94 -1277 102 -1277 152 -1277 6 -249 114 -1277 65 -1277 134 -1277 48 -1277 -138 -1277 187 -407 34 -1277 142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCYYTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 2.2e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.742857 0.000000 0.257143 0.042857 0.571429 0.000000 0.385714 0.000000 0.657143 0.000000 0.342857 0.000000 0.100000 0.000000 0.900000 0.014286 0.328571 0.000000 0.657143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYCYYTY MEME-2 regular expression -------------------------------------------------------------------------------- TC[CT][CT][CT][CT]T[TC] -------------------------------------------------------------------------------- Time 10.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GAYGCARA MEME-3 width = 8 sites = 31 llr = 256 E-value = 1.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAYGCARA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1a::2a4a pos.-specific C ::5:6::: probability G 9:2a3:6: matrix T ::4::::: bits 2.1 * * * * 1.9 * * * * 1.6 ** * * * 1.4 ** * * * Relative 1.2 ** * * * Entropy 1.0 ** * *** (11.9 bits) 0.8 ** * *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACGCAGA consensus T G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAYGCARA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8737223-8737303 55 1.53e-05 AAGAATACGT GACGCAGA GAATGGCCAA chrX:2288155-2288235 10 1.53e-05 TGAATGAAA GACGCAGA GATGTAGATA chrX:5764916-5764996 36 1.53e-05 GAGACGTAGA GACGCAGA GAAAAATAGG chrX:1965011-1965091 48 1.53e-05 GCAATTGAGA GACGCAGA CGGAAAACCC chrX:1938072-1938152 65 1.53e-05 GCCTGGCaga gacgcaga ggagacaa chrX:17562337-17562417 21 1.53e-05 AGAACGGCAA GACGCAGA TAACGTAAGA chrX:11472595-11472675 24 1.53e-05 TGCTGAGTGA GACGCAGA CGTAACTCAA chrIII:6537318-6537398 50 2.98e-05 TCGGGCGATC GATGCAGA GACGCTGCCC chrX:13444150-13444230 33 2.98e-05 CATCGGAAGA GATGCAGA CTTGAATACA chrI:1440898-1440978 65 4.43e-05 ATATTATATG GACGCAAA AAATCGAG chrX:1244404-1244484 49 4.43e-05 AAAAATCGAT GACGCAAA TTACCTGCAC chrX:13605087-13605167 19 4.43e-05 ATGAACCCCT GACGCAAA CAAGTAGGCG chrI:11179381-11179461 34 8.71e-05 TTTTGAGCCG GATGGAGA GCGGCGGCGT chrX:1120403-1120483 70 8.71e-05 gacagagaga gatggaga gGT chrX:9637231-9637311 69 8.71e-05 TAGGAGCGGG GATGGAGA AGAG chrX:1517604-1517684 12 8.71e-05 GAGAGATATA GATGGAGA AAGGAACAAA chrX:16155532-16155612 67 8.71e-05 GAGCTGAGAA GATGGAGA CCTCAG chrV:12038964-12039044 47 1.30e-04 gacgaggagc gacgaaga atgagcgggg chrX:17369721-17369801 71 1.30e-04 AATGATAGAA GAGGCAGA GA chrX:1383704-1383784 33 1.30e-04 CGCTGGCGGC GACGGAAA AGAGTTTGCG chrX:12902472-12902552 40 1.57e-04 TCAGCTTATG GATGGAAA TCGGTTGTCT chrV:3041089-3041169 30 1.57e-04 CTCCCTTCGC GATGAAGA GGTACGTCCA chrX:8163678-8163758 7 1.85e-04 CAGGCA GACGAAAA CACGCGAACC chrX:5262342-5262422 48 1.85e-04 AGAGCGCAAC GAGGCAAA AAGTGTTGGC chrX:3467559-3467639 31 1.85e-04 ATGGACCAAC GAGGCAAA CGATTGGGGG chrX:12518112-12518192 13 1.85e-04 CGGTGAGCGG GAGGCAAA ACTCTCTTGT chrX:8041115-8041195 50 1.85e-04 GACCACACAC GACGAAAA CCTCTTGTTC chrX:16202427-16202507 58 1.97e-04 ACGAGACGCC GATGAAAA GGGCAAAGAT chrII:14046665-14046745 34 2.39e-04 CCGTACCCGT GAGGGAAA ACGGGGGAAA chrX:7651281-7651361 68 2.67e-04 ACTCCCGCGA AACGCAGA GGCGT chrX:1311067-1311147 68 2.81e-04 CTATGGAATT AATGCAGA GAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAYGCARA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8737223-8737303 1.5e-05 54_[+3]_18 chrX:2288155-2288235 1.5e-05 9_[+3]_63 chrX:5764916-5764996 1.5e-05 35_[+3]_37 chrX:1965011-1965091 1.5e-05 47_[+3]_25 chrX:1938072-1938152 1.5e-05 64_[+3]_8 chrX:17562337-17562417 1.5e-05 20_[+3]_52 chrX:11472595-11472675 1.5e-05 23_[+3]_49 chrIII:6537318-6537398 3e-05 49_[+3]_23 chrX:13444150-13444230 3e-05 32_[+3]_40 chrI:1440898-1440978 4.4e-05 64_[+3]_8 chrX:1244404-1244484 4.4e-05 48_[+3]_24 chrX:13605087-13605167 4.4e-05 18_[+3]_54 chrI:11179381-11179461 8.7e-05 33_[+3]_39 chrX:1120403-1120483 8.7e-05 69_[+3]_3 chrX:9637231-9637311 8.7e-05 68_[+3]_4 chrX:1517604-1517684 8.7e-05 11_[+3]_61 chrX:16155532-16155612 8.7e-05 66_[+3]_6 chrV:12038964-12039044 0.00013 46_[+3]_26 chrX:17369721-17369801 0.00013 70_[+3]_2 chrX:1383704-1383784 0.00013 32_[+3]_40 chrX:12902472-12902552 0.00016 39_[+3]_33 chrV:3041089-3041169 0.00016 29_[+3]_43 chrX:8163678-8163758 0.00018 6_[+3]_66 chrX:5262342-5262422 0.00018 47_[+3]_25 chrX:3467559-3467639 0.00018 30_[+3]_42 chrX:12518112-12518192 0.00018 12_[+3]_60 chrX:8041115-8041195 0.00018 49_[+3]_23 chrX:16202427-16202507 0.0002 57_[+3]_15 chrII:14046665-14046745 0.00024 33_[+3]_39 chrX:7651281-7651361 0.00027 67_[+3]_5 chrX:1311067-1311147 0.00028 67_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAYGCARA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAYGCARA width=8 seqs=31 chrX:8737223-8737303 ( 55) GACGCAGA 1 chrX:2288155-2288235 ( 10) GACGCAGA 1 chrX:5764916-5764996 ( 36) GACGCAGA 1 chrX:1965011-1965091 ( 48) GACGCAGA 1 chrX:1938072-1938152 ( 65) GACGCAGA 1 chrX:17562337-17562417 ( 21) GACGCAGA 1 chrX:11472595-11472675 ( 24) GACGCAGA 1 chrIII:6537318-6537398 ( 50) GATGCAGA 1 chrX:13444150-13444230 ( 33) GATGCAGA 1 chrI:1440898-1440978 ( 65) GACGCAAA 1 chrX:1244404-1244484 ( 49) GACGCAAA 1 chrX:13605087-13605167 ( 19) GACGCAAA 1 chrI:11179381-11179461 ( 34) GATGGAGA 1 chrX:1120403-1120483 ( 70) GATGGAGA 1 chrX:9637231-9637311 ( 69) GATGGAGA 1 chrX:1517604-1517684 ( 12) GATGGAGA 1 chrX:16155532-16155612 ( 67) GATGGAGA 1 chrV:12038964-12039044 ( 47) GACGAAGA 1 chrX:17369721-17369801 ( 71) GAGGCAGA 1 chrX:1383704-1383784 ( 33) GACGGAAA 1 chrX:12902472-12902552 ( 40) GATGGAAA 1 chrV:3041089-3041169 ( 30) GATGAAGA 1 chrX:8163678-8163758 ( 7) GACGAAAA 1 chrX:5262342-5262422 ( 48) GAGGCAAA 1 chrX:3467559-3467639 ( 31) GAGGCAAA 1 chrX:12518112-12518192 ( 13) GAGGCAAA 1 chrX:8041115-8041195 ( 50) GACGAAAA 1 chrX:16202427-16202507 ( 58) GATGAAAA 1 chrII:14046665-14046745 ( 34) GAGGGAAA 1 chrX:7651281-7651361 ( 68) AACGCAGA 1 chrX:1311067-1311147 ( 68) AATGCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAYGCARA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.16214 E= 1.6e+002 -190 -1160 188 -1160 206 -1160 -1160 -1160 -1160 90 -66 53 -1160 -1160 198 -1160 -58 116 2 -1160 206 -1160 -1160 -1160 69 -1160 127 -1160 206 -1160 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAYGCARA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.6e+002 0.064516 0.000000 0.935484 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.483871 0.161290 0.354839 0.000000 0.000000 1.000000 0.000000 0.161290 0.580645 0.258065 0.000000 1.000000 0.000000 0.000000 0.000000 0.387097 0.000000 0.612903 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAYGCARA MEME-3 regular expression -------------------------------------------------------------------------------- GA[CT]G[CG]A[GA]A -------------------------------------------------------------------------------- Time 14.16 secs. ******************************************************************************** ******************************************************************************** MOTIF MAGAGARA MEME-4 width = 8 sites = 11 llr = 109 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAGAGARA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4a:a:a6a pos.-specific C 6::::::: probability G ::a:a:4: matrix T :::::::: bits 2.1 ***** * 1.9 ***** * 1.6 ***** * 1.4 ***** * Relative 1.2 ***** * Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGAGAAA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAGARA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8737223-8737303 13 1.34e-05 GAAATGAGGC CAGAGAAA TTAGACAGAG chrIII:11481591-11481671 50 1.34e-05 AAGAGAGCCG CAGAGAAA TCCCCCACCC chrX:16771036-16771116 20 1.34e-05 CAGAGTGTGC CAGAGAAA GGACACCCCG chrI:2683038-2683118 5 2.57e-05 agag aagagaaa aaagaagaag chrX:5480274-5480354 59 2.57e-05 AAAGAGGGCA AAGAGAAA ACAATCTGTT chrV:155357-155437 61 2.57e-05 AGAGAATGAG AAGAGAAA GAAAAAGAGA chrX:10372712-10372792 2 2.57e-05 A AAGAGAAA TAATATAGAA chrX:11210629-11210709 29 3.98e-05 ACATGTGAAC CAGAGAGA ACGCCGCAGA chrX:1845623-1845703 12 3.98e-05 gaagagagcg cagagaga tgagagggtg chrX:1120403-1120483 62 3.98e-05 gagagacaga cagagaga gatggagagG chrX:4978293-4978373 27 3.98e-05 AATGAATTGG CAGAGAGA AAATGGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAGARA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8737223-8737303 1.3e-05 12_[+4]_60 chrIII:11481591-11481671 1.3e-05 49_[+4]_23 chrX:16771036-16771116 1.3e-05 19_[+4]_53 chrI:2683038-2683118 2.6e-05 4_[+4]_68 chrX:5480274-5480354 2.6e-05 58_[+4]_14 chrV:155357-155437 2.6e-05 60_[+4]_12 chrX:10372712-10372792 2.6e-05 1_[+4]_71 chrX:11210629-11210709 4e-05 28_[+4]_44 chrX:1845623-1845703 4e-05 11_[+4]_61 chrX:1120403-1120483 4e-05 61_[+4]_11 chrX:4978293-4978373 4e-05 26_[+4]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAGARA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAGAGARA width=8 seqs=11 chrX:8737223-8737303 ( 13) CAGAGAAA 1 chrIII:11481591-11481671 ( 50) CAGAGAAA 1 chrX:16771036-16771116 ( 20) CAGAGAAA 1 chrI:2683038-2683118 ( 5) AAGAGAAA 1 chrX:5480274-5480354 ( 59) AAGAGAAA 1 chrV:155357-155437 ( 61) AAGAGAAA 1 chrX:10372712-10372792 ( 2) AAGAGAAA 1 chrX:11210629-11210709 ( 29) CAGAGAGA 1 chrX:1845623-1845703 ( 12) CAGAGAGA 1 chrX:1120403-1120483 ( 62) CAGAGAGA 1 chrX:4978293-4978373 ( 27) CAGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAGARA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 1.9e+004 60 129 -1010 -1010 206 -1010 -1010 -1010 -1010 -1010 198 -1010 206 -1010 -1010 -1010 -1010 -1010 198 -1010 206 -1010 -1010 -1010 140 -1010 52 -1010 206 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAGARA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.9e+004 0.363636 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGAGARA MEME-4 regular expression -------------------------------------------------------------------------------- [CA]AGAGA[AG]A -------------------------------------------------------------------------------- Time 17.66 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGAAAT MEME-5 width = 8 sites = 2 llr = 23 E-value = 6.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGAAAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa:aaa: pos.-specific C :::::::: probability G :::a:::: matrix T :::::::a bits 2.1 ******** 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGAAAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10204500-10204580 26 1.19e-05 GCGGACGTCC AAAGAAAT GACGAAACCT chrX:10756325-10756405 72 1.19e-05 CAAGCGGGTA AAAGAAAT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10204500-10204580 1.2e-05 25_[+5]_47 chrX:10756325-10756405 1.2e-05 71_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGAAAT width=8 seqs=2 chrX:10204500-10204580 ( 26) AAAGAAAT 1 chrX:10756325-10756405 ( 72) AAAGAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 6.9e+004 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 -765 -765 197 -765 205 -765 -765 -765 205 -765 -765 -765 205 -765 -765 -765 -765 -765 -765 202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.9e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAT MEME-5 regular expression -------------------------------------------------------------------------------- AAAGAAAT -------------------------------------------------------------------------------- Time 21.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12551099-12551179 8.12e-02 80 chrV:7647273-7647353 3.72e-02 80 chrV:3041089-3041169 7.18e-04 18_[+2(3.44e-05)]_54 chrX:13435275-13435355 6.88e-01 80 chrX:10354016-10354096 3.04e-01 80 chrX:12730234-12730314 1.06e-01 80 chrX:5689236-5689316 7.34e-02 80 chrX:15811500-15811580 7.92e-02 36_[+2(3.44e-05)]_36 chrX:15790600-15790680 3.44e-02 7_[+2(9.96e-05)]_65 chrX:1306682-1306762 1.35e-01 80 chrX:10143591-10143671 1.80e-01 80 chrX:1371041-1371121 6.98e-02 80 chrIII:8054087-8054167 1.13e-01 80 chrX:15791985-15792065 3.51e-04 47_[+4(3.98e-05)]_25 chrX:11472595-11472675 1.74e-02 23_[+3(1.53e-05)]_49 chrX:17688462-17688542 3.10e-01 45_[+2(9.96e-05)]_27 chrII:10652280-10652360 9.74e-01 80 chrIII:13272391-13272471 7.71e-01 80 chrX:7289724-7289804 7.66e-01 80 chrX:1682707-1682787 9.95e-01 80 chrX:13605087-13605167 3.58e-02 18_[+3(4.43e-05)]_54 chrX:1387094-1387174 9.65e-01 80 chrX:8041115-8041195 1.22e-01 80 chrII:12553648-12553728 3.00e-01 80 chrX:11361286-11361366 3.57e-01 80 chrX:11899221-11899301 1.33e-01 80 chrX:403111-403191 1.44e-02 46_[+5(4.70e-05)]_26 chrV:7657361-7657441 4.11e-01 80 chrX:1437247-1437327 1.41e-01 80 chrX:16327416-16327496 2.52e-01 38_[+2(3.44e-05)]_34 chrX:1439050-1439130 5.59e-01 80 chrX:10756325-10756405 2.02e-03 71_[+5(1.19e-05)]_1 chrX:1492313-1492393 2.49e-01 80 chrX:15655098-15655178 4.46e-01 18_[+2(9.96e-05)]_54 chrX:10668026-10668106 1.84e-01 22_[+2(3.44e-05)]_50 chrX:8048813-8048893 8.58e-05 47_[+5(4.70e-05)]_25 chrX:1961513-1961593 4.57e-02 80 chrX:8104037-8104117 9.67e-01 80 chrX:788141-788221 1.97e-01 72_[+2(6.70e-05)] chrX:16695317-16695397 1.19e-03 80 chrX:3918334-3918414 6.65e-02 55_[+5(4.70e-05)]_17 chrX:1383704-1383784 1.37e-03 80 chrX:785506-785586 3.78e-04 36_[+2(3.44e-05)]_36 chrX:4978293-4978373 1.15e-04 26_[+4(3.98e-05)]_22_[+1(3.92e-05)]_\ 16 chrX:1339069-1339149 3.25e-02 27_[+2(3.44e-05)]_45 chrV:16628986-16629066 8.30e-01 80 chrX:1369867-1369947 2.16e-03 30_[+1(5.22e-05)]_42 chrX:9636126-9636206 2.34e-01 80 chrX:2940659-2940739 1.00e+00 80 chrX:11926429-11926509 2.90e-01 80 chrX:805534-805614 2.86e-03 25_[+2(3.44e-05)]_47 chrX:15222346-15222426 7.73e-01 80 chrX:13696341-13696421 9.51e-01 80 chrX:1339268-1339348 1.94e-02 6_[+5(1.19e-05)]_66 chrX:4214796-4214876 5.67e-02 80 chrX:14027042-14027122 9.34e-01 80 chrV:3045087-3045167 4.00e-01 80 chrX:1871128-1871208 5.95e-01 80 chrX:4890313-4890393 4.45e-01 80 chrX:1977881-1977961 2.19e-01 31_[+2(6.70e-05)]_41 chrX:1244404-1244484 1.44e-03 36_[+5(4.70e-05)]_4_[+3(4.43e-05)]_\ 24 chrIV:4656186-4656266 9.65e-01 80 chrX:16202427-16202507 3.05e-03 80 chrI:1440898-1440978 2.03e-04 21_[+1(7.99e-05)]_35_[+3(4.43e-05)]_\ 8 chrX:15983466-15983546 7.73e-02 80 chrIV:15050411-15050491 8.74e-01 80 chrX:17545692-17545772 5.22e-04 14_[+2(6.70e-05)]_16_[+2(3.44e-05)]_\ 34 chrX:8053125-8053205 1.04e-02 38_[+2(6.70e-05)]_34 chrX:2901281-2901361 7.10e-01 80 chrX:17562337-17562417 2.12e-05 5_[+1(2.54e-05)]_7_[+3(1.53e-05)]_\ 52 chrX:16155532-16155612 1.04e-02 66_[+3(8.71e-05)]_6 chrII:14406771-14406851 8.92e-01 80 chrX:12902472-12902552 6.88e-03 11_[+2(6.70e-05)]_61 chrX:5360879-5360959 6.96e-01 80 chrX:8039046-8039126 1.12e-02 20_[+1(5.22e-05)]_52 chrX:13669801-13669881 2.34e-01 80 chrX:15373888-15373968 8.63e-03 4_[+1(6.60e-05)]_68 chrX:10372712-10372792 1.07e-03 1_[+4(2.57e-05)]_71 chrX:11924325-11924405 7.73e-01 80 chrX:11384843-11384923 7.15e-01 80 chrIII:3623825-3623905 9.84e-03 39_[+1(7.99e-05)]_33 chrX:17221987-17222067 6.75e-01 80 chrX:1517604-1517684 1.08e-02 11_[+3(8.71e-05)]_61 chrX:1853779-1853859 2.18e-01 80 chrX:9637231-9637311 8.53e-02 68_[+3(8.71e-05)]_4 chrX:6807681-6807761 7.08e-01 80 chrX:1938072-1938152 7.63e-03 64_[+3(1.53e-05)]_8 chrX:16771036-16771116 1.13e-02 19_[+4(1.34e-05)]_53 chrX:11361500-11361580 4.34e-01 80 chrX:14491327-14491407 5.73e-03 66_[+1(7.99e-05)]_6 chrX:13504086-13504166 7.07e-05 4_[+1(3.92e-05)]_68 chrX:13716454-13716534 9.99e-01 80 chrX:1914494-1914574 1.13e-03 48_[+4(7.86e-05)]_24 chrX:14486599-14486679 4.59e-01 80 chrX:11297123-11297203 3.10e-01 80 chrX:1965011-1965091 3.23e-03 47_[+3(1.53e-05)]_25 chrV:386336-386416 9.95e-01 80 chrIV:9269086-9269166 3.58e-01 80 chrI:14063665-14063745 2.67e-02 80 chrX:17369721-17369801 5.08e-03 80 chrIII:13019636-13019716 5.39e-01 80 chrX:13519153-13519233 2.02e-01 80 chrX:5368383-5368463 1.34e-01 80 chrX:12518112-12518192 2.16e-02 80 chrX:871159-871239 5.90e-03 80 chrIV:15938511-15938591 2.62e-01 80 chrX:9113960-9114040 5.28e-01 80 chrI:11699883-11699963 6.58e-01 80 chrX:7651281-7651361 2.31e-01 80 chrX:16133982-16134062 2.79e-01 80 chrX:1120403-1120483 7.01e-05 31_[+1(3.92e-05)]_22_[+4(3.98e-05)]_\ [+3(8.71e-05)]_3 chrIII:12993050-12993130 6.13e-01 80 chrI:7753428-7753508 5.82e-02 48_[+1(2.54e-05)]_24 chrX:6263390-6263470 1.33e-01 80 chrX:852813-852893 9.61e-01 80 chrX:14459117-14459197 4.16e-01 80 chrIV:11568519-11568599 8.94e-01 80 chrX:11257271-11257351 2.99e-01 80 chrX:10990741-10990821 9.92e-01 80 chrX:6806716-6806796 1.36e-02 80 chrV:17548749-17548829 1.00e+00 80 chrX:17181382-17181462 1.91e-02 46_[+2(6.70e-05)]_26 chrIII:9112606-9112686 8.98e-03 80 chrX:13585007-13585087 1.00e+00 80 chrX:3467559-3467639 1.67e-03 61_[+1(1.30e-05)]_11 chrII:14046665-14046745 5.82e-03 80 chrII:3964598-3964678 9.16e-01 80 chrIV:9264023-9264103 1.78e-02 80 chrV:116397-116477 1.50e-02 80 chrIV:4454973-4455053 9.22e-01 80 chrIV:4644555-4644635 1.00e+00 80 chrI:11179381-11179461 1.13e-01 33_[+3(8.71e-05)]_39 chrX:1888573-1888653 7.67e-01 80 chrIII:2559854-2559934 1.00e+00 80 chrII:15058327-15058407 5.86e-01 80 chrX:1450494-1450574 8.07e-01 80 chrX:1311067-1311147 9.28e-03 80 chrIII:2561038-2561118 7.05e-01 80 chrX:13948287-13948367 5.38e-01 80 chrX:15438934-15439014 9.02e-01 80 chrX:2793828-2793908 7.13e-01 80 chrX:13442574-13442654 7.48e-04 7_[+4(3.98e-05)]_65 chrII:6710801-6710881 7.13e-01 80 chrX:5818328-5818408 6.25e-01 80 chrX:17150197-17150277 1.45e-02 80 chrII:13924503-13924583 4.52e-01 20_[+2(9.96e-05)]_52 chrV:155357-155437 9.07e-06 60_[+4(2.57e-05)]_[+1(2.54e-05)]_4 chrX:1856352-1856432 3.44e-01 80 chrX:13444150-13444230 1.55e-02 32_[+3(2.98e-05)]_40 chrIII:11481591-11481671 3.97e-05 49_[+4(1.34e-05)]_23 chrIII:4280925-4281005 2.20e-02 80 chrI:11783338-11783418 4.93e-01 80 chrX:11248279-11248359 3.81e-01 80 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************